assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_001644725.1_ASM164472v1	NZ_CP015240	Escherichia coli strain 2011C-3911 chromosome, complete genome	1	132061-132194	1	CRISPRCasFinder	no		DEDDh,cas3,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,c2c9_V-U4,DinG	Orphan	TGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACA	38	0	0	NA	NA	NA	1	1	Orphan	DEDDh,cas3,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,c2c9_V-U4,DinG	NA,NA	NA|314aa|up_9|NZ_CP015240.1_120993_121935_-	cd00761, Glyco_tranf_GTA_type, Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold	NA|372aa|up_8|NZ_CP015240.1_121974_123090_-	pfam14897, EpsG, EpsG family	NA|182aa|up_7|NZ_CP015240.1_123186_123732_-	pfam00908, dTDP_sugar_isom, dTDP-4-dehydrorhamnose 3,5-epimerase	NA|293aa|up_6|NZ_CP015240.1_123736_124615_-	PRK15480, PRK15480, glucose-1-phosphate thymidylyltransferase RfbA; Provisional	NA|300aa|up_5|NZ_CP015240.1_124672_125572_-	PRK09987, PRK09987, dTDP-4-dehydrorhamnose reductase; Provisional	NA|362aa|up_4|NZ_CP015240.1_125571_126657_-	PRK10084, PRK10084, dTDP-glucose 4,6 dehydratase; Provisional	NA|298aa|up_3|NZ_CP015240.1_127029_127923_-	PRK10122, PRK10122, UTP--glucose-1-phosphate uridylyltransferase GalF	NA|465aa|up_2|NZ_CP015240.1_128097_129492_-	PRK10123, wcaM, putative colanic acid biosynthesis protein; Provisional	NA|407aa|up_1|NZ_CP015240.1_129502_130723_-	TIGR04005, wcaL, colanic acid biosynthesis glycosyltransferase WcaL	NA|427aa|up_0|NZ_CP015240.1_130719_132000_-	TIGR04006, wcaK, colanic acid biosynthesis pyruvyl transferase WcaK	NA|493aa|down_0|NZ_CP015240.1_132275_133754_-	PRK10459, PRK10459, MOP flippase family protein	NA|465aa|down_1|NZ_CP015240.1_133755_135150_-	PRK10124, PRK10124, putative UDP-glucose lipid carrier transferase; Provisional	NA|457aa|down_2|NZ_CP015240.1_135204_136575_-	PRK15414, PRK15414, phosphomannomutase	NA|479aa|down_3|NZ_CP015240.1_136767_138204_-	PRK15460, cpsB, mannose-1-phosphate guanyltransferase; Provisional	NA|408aa|down_4|NZ_CP015240.1_138206_139430_-	TIGR04007, wcaI, colanic acid biosynthesis glycosyl transferase WcaI	NA|160aa|down_5|NZ_CP015240.1_139426_139906_-	PRK15434, PRK15434, GDP-mannose mannosyl hydrolase	NA|322aa|down_6|NZ_CP015240.1_139908_140874_-	cd05239, GDP_FS_SDR_e, GDP-fucose synthetase, extended (e) SDRs	NA|374aa|down_7|NZ_CP015240.1_140876_141998_-	COG1089, Gmd, GDP-D-mannose dehydratase [Cell envelope biogenesis, outer membrane]	NA|183aa|down_8|NZ_CP015240.1_142023_142572_-	TIGR04008, WcaF, colanic acid biosynthesis acetyltransferase WcaF	NA|249aa|down_9|NZ_CP015240.1_142587_143334_-	PRK10063, PRK10063, colanic acid biosynthesis glycosyltransferase WcaE
GCF_001644725.1_ASM164472v1	NZ_CP015240	Escherichia coli strain 2011C-3911 chromosome, complete genome	2	869016-870080	2,1,1	CRISPRCasFinder,CRT,PILER-CR	no	cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3	DEDDh,cas3,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,c2c9_V-U4,DinG	Type I-E	CGGTTTATCCCCGCTGGCGCGGGGAACAC,CGGTTTATCCCCGCTGGCGCGGGGAACAC,CGGTTTATCCCCGCTGGCGCGGGGAACAC	29,29,29	0	0	NA	NA	I-E:I-E:I-E	17,17,16	17	TypeI-E	DEDDh,cas3,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,c2c9_V-U4,DinG	NA,NA	NA|254aa|up_9|NZ_CP015240.1_860828_861590_-	PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional	NA|350aa|up_8|NZ_CP015240.1_861570_862620_-	PRK00984, truD, tRNA pseudouridine synthase D; Reviewed	NA|160aa|up_7|NZ_CP015240.1_862616_863096_-	PRK00084, ispF, 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Reviewed	NA|237aa|up_6|NZ_CP015240.1_863095_863806_-	PRK00155, ispD, D-ribitol-5-phosphate cytidylyltransferase	NA|104aa|up_5|NZ_CP015240.1_863824_864136_-	PRK00888, ftsB, cell division protein FtsB; Reviewed	NA|108aa|up_4|NZ_CP015240.1_864329_864653_-	pfam12084, DUF3561, Protein of unknown function (DUF3561)	NA|202aa|up_3|NZ_CP015240.1_864702_865308_-	PRK03846, PRK03846, adenylylsulfate kinase; Provisional	NA|476aa|up_2|NZ_CP015240.1_865307_866735_-	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional	NA|303aa|up_1|NZ_CP015240.1_866736_867645_-	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD	NA|346aa|up_0|NZ_CP015240.1_867896_868934_+	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional	cas2|98aa|down_0|NZ_CP015240.1_870176_870470_-	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional	cas1|308aa|down_1|NZ_CP015240.1_870466_871390_-	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI	cas6e|217aa|down_2|NZ_CP015240.1_871386_872037_-	TIGR01907, CRISPR_system_Cascade_subunit_CasE, CRISPR-associated protein Cas6/Cse3/CasE, subtype I-E/ECOLI	cas5|249aa|down_3|NZ_CP015240.1_872018_872765_-	cd09645, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5	cas7|352aa|down_4|NZ_CP015240.1_872775_873831_-	TIGR01869, CRISPR_system_Cascade_subunit_CasC, CRISPR-associated protein Cas7/Cse4/CasC, subtype I-E/ECOLI	cse2gr11|179aa|down_5|NZ_CP015240.1_873842_874379_-	TIGR02548, CRISPR_system_Cascade_subunit_CasB, CRISPR type I-E/ECOLI-associated protein CasB/Cse2	cas8e|521aa|down_6|NZ_CP015240.1_874375_875938_-	TIGR02547, CRISPR_system_Cascade_subunit_CasA, CRISPR type I-E/ECOLI-associated protein CasA/Cse1	cas3|900aa|down_7|NZ_CP015240.1_876035_878735_-	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms]	NA|51aa|down_8|NZ_CP015240.1_878927_879080_-	pfam01848, HOK_GEF, Hok/gef family	NA|245aa|down_9|NZ_CP015240.1_879344_880079_-	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase
GCF_001644725.1_ASM164472v1	NZ_CP015240	Escherichia coli strain 2011C-3911 chromosome, complete genome	3	895779-896661	3,2,2	CRISPRCasFinder,CRT,PILER-CR	no	cas3	DEDDh,cas3,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,c2c9_V-U4,DinG	Unclear	CGGTTTATCCCCGCTGGCGCGGGGAACTC,CGGTTTATCCCCGCTGGCGCGGGGAACTC,CGGTTTATCCCCGCTGGCGCGGGGAACTC	29,29,29	0	0	NA	NA	I-E:I-E:I-E	14,14,14	14	Unclear	DEDDh,cas3,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,c2c9_V-U4,DinG	NA,NA|47aa|down_1|NZ_CP015240.1_897810_897951_+	NA|424aa|up_9|NZ_CP015240.1_884422_885694_+	PRK10015, PRK10015, oxidoreductase; Provisional	NA|87aa|up_8|NZ_CP015240.1_885684_885945_+	COG2440, FixX, Ferredoxin-like protein [Energy production and conversion]	NA|192aa|up_7|NZ_CP015240.1_885961_886537_+	COG1954, GlpP, Glycerol-3-phosphate responsive antiterminator (mRNA-binding) [Transcription]	NA|287aa|up_6|NZ_CP015240.1_886684_887545_-	COG2025, FixB, Electron transfer flavoprotein, alpha subunit [Energy production and conversion]	NA|260aa|up_5|NZ_CP015240.1_887541_888321_-	COG2086, FixA, Electron transfer flavoprotein, beta subunit [Energy production and conversion]	NA|470aa|up_4|NZ_CP015240.1_888298_889708_-	cd17371, MFS_MucK, Cis,cis-muconate transport protein and similar proteins of the Major Facilitator Superfamily	NA|485aa|up_3|NZ_CP015240.1_889729_891184_-	COG0277, GlcD, FAD/FMN-containing dehydrogenases [Energy production and conversion]	NA|262aa|up_2|NZ_CP015240.1_891253_892039_-	cd05347, Ga5DH-like_SDR_c, gluconate 5-dehydrogenase (Ga5DH)-like, classical (c) SDRs	NA|426aa|up_1|NZ_CP015240.1_892357_893635_+	cd06174, MFS, Major Facilitator Superfamily	NA|493aa|up_0|NZ_CP015240.1_893661_895140_+	cd07779, FGGY_ygcE_like, uncharacterized ygcE-like proteins	NA|224aa|down_0|NZ_CP015240.1_897000_897672_-	TIGR04322, organic_radical_activating_enzyme, putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE	NA|47aa|down_1|NZ_CP015240.1_897810_897951_+	NA	NA|433aa|down_2|NZ_CP015240.1_898896_900195_-	PRK00077, eno, enolase; Provisional	NA|546aa|down_3|NZ_CP015240.1_900282_901920_-	PRK05380, pyrG, CTP synthetase; Validated	NA|264aa|down_4|NZ_CP015240.1_902147_902939_-	PRK09562, mazG, nucleoside triphosphate pyrophosphohydrolase; Reviewed	NA|112aa|down_5|NZ_CP015240.1_903009_903345_-	PRK09907, PRK09907, endoribonuclease MazF	NA|83aa|down_6|NZ_CP015240.1_903344_903593_-	PRK09798, PRK09798, MazF-MazE toxin-antitoxin system antitoxin MazE	NA|745aa|down_7|NZ_CP015240.1_903670_905905_-	PRK10872, relA, (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional	NA|434aa|down_8|NZ_CP015240.1_905952_907254_-	PRK13168, rumA, 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD	NA|919aa|down_9|NZ_CP015240.1_907310_910067_+	PRK11107, PRK11107, hybrid sensory histidine kinase BarA; Provisional
GCF_001644725.1_ASM164472v1	NZ_CP015240	Escherichia coli strain 2011C-3911 chromosome, complete genome	4	3312053-3312149	4	CRISPRCasFinder	no		DEDDh,cas3,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,c2c9_V-U4,DinG	Orphan	GCTTGACGCGTCTTATCAGGCCTACAA	27	0	0	NA	NA	NA	1	1	Orphan	DEDDh,cas3,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,c2c9_V-U4,DinG	NA,NA	NA|454aa|up_9|NZ_CP015240.1_3299922_3301284_+	PRK08044, PRK08044, allantoinase AllB	NA|434aa|up_8|NZ_CP015240.1_3301340_3302642_+	PRK11412, PRK11412, uracil/xanthine transporter	NA|382aa|up_7|NZ_CP015240.1_3302663_3303809_+	PRK09932, PRK09932, glycerate 3-kinase	NA|262aa|up_6|NZ_CP015240.1_3303937_3304723_-	COG3257, GlxB, Uncharacterized protein, possibly involved in glyoxylate utilization [General function prediction only]	NA|412aa|up_5|NZ_CP015240.1_3304733_3305969_-	TIGR03176, AllC, allantoate amidohydrolase	NA|350aa|up_4|NZ_CP015240.1_3305990_3307040_-	PRK15025, PRK15025, ureidoglycolate dehydrogenase; Provisional	NA|556aa|up_3|NZ_CP015240.1_3307356_3309024_+	PRK06091, PRK06091, membrane protein FdrA; Validated	NA|420aa|up_2|NZ_CP015240.1_3309033_3310293_+	pfam06545, DUF1116, Protein of unknown function (DUF1116)	NA|272aa|up_1|NZ_CP015240.1_3310303_3311119_+	pfam11392, DUF2877, Protein of unknown function (DUF2877)	NA|298aa|up_0|NZ_CP015240.1_3311115_3312009_+	PRK09411, PRK09411, carbamate kinase; Reviewed	NA|356aa|down_0|NZ_CP015240.1_3312213_3313281_-	PRK06019, PRK06019, phosphoribosylaminoimidazole carboxylase ATPase subunit; Reviewed	NA|170aa|down_1|NZ_CP015240.1_3313277_3313787_-	COG0041, PurE, Phosphoribosylcarboxyaminoimidazole (NCAIR) mutase [Nucleotide transport and metabolism]	NA|241aa|down_2|NZ_CP015240.1_3313904_3314627_-	PRK05340, PRK05340, UDP-2,3-diacylglucosamine hydrolase; Provisional	NA|165aa|down_3|NZ_CP015240.1_3314629_3315124_-	PRK10791, PRK10791, peptidylprolyl isomerase B	NA|462aa|down_4|NZ_CP015240.1_3315297_3316683_+	PRK00260, cysS, cysteinyl-tRNA synthetase; Validated	NA|174aa|down_5|NZ_CP015240.1_3316718_3317240_-	COG1988, COG1988, Predicted membrane-bound metal-dependent hydrolases [General function prediction only]	NA|71aa|down_6|NZ_CP015240.1_3317347_3317560_-	PRK11507, PRK11507, ribosome-associated protein YbcJ	NA|289aa|down_7|NZ_CP015240.1_3317561_3318428_-	PRK10792, PRK10792, bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD	NA|181aa|down_8|NZ_CP015240.1_3318908_3319451_+	PRK15194, PRK15194, type 1 fimbrial protein subunit FimA	NA|231aa|down_9|NZ_CP015240.1_3319670_3320363_+	PRK15195, PRK15195, molecular chaperone FimC
GCF_001644725.1_ASM164472v1	NZ_CP015240	Escherichia coli strain 2011C-3911 chromosome, complete genome	5	4466714-4466916	3	PILER-CR	no		DEDDh,cas3,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,c2c9_V-U4,DinG	Orphan	TCTCCCCACTTTTACTCCCCACTTTTT	27	0	0	NA	NA	NA	2	2	Orphan	DEDDh,cas3,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,c2c9_V-U4,DinG	NA|61aa|up_8|NZ_CP015240.1_4461916_4462099_-,NA|94aa|up_7|NZ_CP015240.1_4462305_4462587_-,NA|138aa|up_5|NZ_CP015240.1_4463590_4464004_-,NA|69aa|up_2|NZ_CP015240.1_4465418_4465625_-,NA|84aa|up_0|NZ_CP015240.1_4466461_4466713_-,NA|76aa|down_1|NZ_CP015240.1_4468625_4468853_-,NA|77aa|down_2|NZ_CP015240.1_4468845_4469076_-,NA|71aa|down_3|NZ_CP015240.1_4469065_4469278_-,NA|66aa|down_4|NZ_CP015240.1_4469270_4469468_-,NA|60aa|down_5|NZ_CP015240.1_4469662_4469842_+,NA|76aa|down_6|NZ_CP015240.1_4469899_4470127_+,NA|60aa|down_7|NZ_CP015240.1_4470347_4470527_+,NA|68aa|down_8|NZ_CP015240.1_4470584_4470788_+	NA|122aa|up_9|NZ_CP015240.1_4460690_4461056_-	PRK10452, PRK10452, multidrug/spermidine efflux SMR transporter subunit MdtJ	NA|61aa|up_8|NZ_CP015240.1_4461916_4462099_-	NA	NA|94aa|up_7|NZ_CP015240.1_4462305_4462587_-	NA	NA|181aa|up_6|NZ_CP015240.1_4462842_4463385_-	COG4220, COG4220, Phage DNA packaging protein, Nu1 subunit of terminase [DNA replication, recombination, and repair]	NA|138aa|up_5|NZ_CP015240.1_4463590_4464004_-	NA	NA|112aa|up_4|NZ_CP015240.1_4464016_4464352_-	pfam02924, HDPD, Bacteriophage lambda head decoration protein D	NA|352aa|up_3|NZ_CP015240.1_4464363_4465419_-	pfam03864, Phage_cap_E, Phage major capsid protein E	NA|69aa|up_2|NZ_CP015240.1_4465418_4465625_-	NA	NA|141aa|up_1|NZ_CP015240.1_4466042_4466465_-	cd04496, SSB_OBF, SSB_OBF: A subfamily of OB folds similar to the OB fold of ssDNA-binding protein (SSB)	NA|84aa|up_0|NZ_CP015240.1_4466461_4466713_-	NA	NA|100aa|down_0|NZ_CP015240.1_4468320_4468620_-	pfam13973, DUF4222, Domain of unknown function (DUF4222)	NA|76aa|down_1|NZ_CP015240.1_4468625_4468853_-	NA	NA|77aa|down_2|NZ_CP015240.1_4468845_4469076_-	NA	NA|71aa|down_3|NZ_CP015240.1_4469065_4469278_-	NA	NA|66aa|down_4|NZ_CP015240.1_4469270_4469468_-	NA	NA|60aa|down_5|NZ_CP015240.1_4469662_4469842_+	NA	NA|76aa|down_6|NZ_CP015240.1_4469899_4470127_+	NA	NA|60aa|down_7|NZ_CP015240.1_4470347_4470527_+	NA	NA|68aa|down_8|NZ_CP015240.1_4470584_4470788_+	NA	NA|63aa|down_9|NZ_CP015240.1_4471031_4471220_-	COG3311, AlpA, Predicted transcriptional regulator [Transcription]
