assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_001644665.1_ASM164466v1	NZ_CP011393	Fervidobacterium pennivorans strain DYC, complete genome	1	145286-153064	1,1,1,2,3,4,5	PILER-CR,CRISPRCasFinder,CRT,PILER-CR,PILER-CR,PILER-CR,PILER-CR	no	cmr6gr7,cmr5gr11,cmr4gr7,cmr3gr5,cas10,cmr1gr7,csx1,cas2,cas6,csm5gr7,csm4gr5	cmr6gr7,cmr5gr11,cmr4gr7,cmr3gr5,cas10,cmr1gr7,csx1,cas2,cas6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas1,cas14k,cas3HD,cas3,csa3,DEDDh	Type III-D,Type III-C,Type III-A,Type III-B	AGTTTCCATCCCTCATAGTCACTTCTAAAAC,GTTTCCATCCCTCATAGTCACTTCTAAAAC,GTTTCCATCCCTCATAGTCACTTCTAAAAC,GTTTCCATCCCTCATAGTCACTTCTAAAAC,GTTTCCATCCCTCATAGTCACTTCTAAAAC,GTTTCCATCCCTCATAGTCACTTCTAAAAC,GTTTCCATCCCTCATAGTCACTTCTAAAAC	31,30,30,30,30,30,30	0	0	NA	NA	NA:NA:NA:NA:NA:NA:NA	98,110,110,98,98,98,98	110	TypeIII-D,TypeIII-C,TypeIII-A,TypeIII-B	cmr6gr7,cmr5gr11,cmr4gr7,cmr3gr5,cas10,cmr1gr7,csx1,cas2,cas6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas1,cas14k,cas3HD,cas3,csa3,DEDDh	NA|353aa|up_1|NZ_CP011393.1_142344_143403_-,NA|330aa|up_0|NZ_CP011393.1_144259_145249_-,NA|280aa|down_6|NZ_CP011393.1_161419_162259_-,NA|185aa|down_7|NZ_CP011393.1_162328_162883_-,NA|264aa|down_9|NZ_CP011393.1_166164_166956_-	NA|292aa|up_9|NZ_CP011393.1_129758_130634_+	cd07010, cupin_PMI_type_I_N_bac, Phosphomannose isomerase in bacteria and archaea, N-terminal cupin domain	NA|84aa|up_8|NZ_CP011393.1_130711_130963_-	PRK00982, acpP, acyl carrier protein; Provisional	NA|579aa|up_7|NZ_CP011393.1_131112_132849_-	cd09610, M3B_PepF, Peptidase family M3B, oligopeptidase F (PepF)	NA|605aa|up_6|NZ_CP011393.1_132904_134719_-	PRK05433, PRK05433, GTP-binding protein LepA; Provisional	NA|261aa|up_5|NZ_CP011393.1_134754_135537_-	pfam00924, MS_channel, Mechanosensitive ion channel	NA|328aa|up_4|NZ_CP011393.1_135561_136545_-	PRK00927, PRK00927, tryptophanyl-tRNA synthetase; Reviewed	NA|1147aa|up_3|NZ_CP011393.1_137240_140681_-	PRK09401, PRK09401, reverse gyrase; Reviewed	NA|343aa|up_2|NZ_CP011393.1_140689_141718_-	PRK00064, recF, recombination protein F; Reviewed	NA|353aa|up_1|NZ_CP011393.1_142344_143403_-	NA	NA|330aa|up_0|NZ_CP011393.1_144259_145249_-	NA	cmr6gr7|266aa|down_0|NZ_CP011393.1_154067_154865_-	cd09661, Cmr6_III-B, CRISPR/Cas system-associated RAMP superfamily protein Cmr6	cmr5gr11|119aa|down_1|NZ_CP011393.1_154857_155214_-	pfam09701, Cas_Cmr5, CRISPR-associated protein (Cas_Cmr5)	cmr4gr7|296aa|down_2|NZ_CP011393.1_155210_156098_-	COG1336, COG1336, CRISPR system related protein, RAMP superfamily [Defense mechanisms]	cmr3gr5|360aa|down_3|NZ_CP011393.1_156118_157198_-	COG1769, COG1769, CRISPR system related protein, RAMP superfamily [Defense    mechanisms]	cas10|832aa|down_4|NZ_CP011393.1_157197_159693_-	cd09679, Cas10_III, CRISPR/Cas system-associated protein Cas10	cmr1gr7|458aa|down_5|NZ_CP011393.1_159714_161088_-	COG1367, COG1367, CRISPR system related protein, RAMP superfamily [Defense mechanisms]	NA|280aa|down_6|NZ_CP011393.1_161419_162259_-	NA	NA|185aa|down_7|NZ_CP011393.1_162328_162883_-	NA	csx1|532aa|down_8|NZ_CP011393.1_163569_165165_-	cd09732, Csx1_III-U, CRISPR/Cas system-associated protein Csx1	NA|264aa|down_9|NZ_CP011393.1_166164_166956_-	NA
GCF_001644665.1_ASM164466v1	NZ_CP011393	Fervidobacterium pennivorans strain DYC, complete genome	2	165380-165622	2,2	CRISPRCasFinder,CRT	no	cmr6gr7,cmr5gr11,cmr4gr7,cmr3gr5,cas10,cmr1gr7,csx1,cas2,cas6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas1	cmr6gr7,cmr5gr11,cmr4gr7,cmr3gr5,cas10,cmr1gr7,csx1,cas2,cas6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas1,cas14k,cas3HD,cas3,csa3,DEDDh	Type III-B, Type III-A?,Type III-A,Type III-C,Type III-D	TTCCAACCCTCATAGTCACTTCTAAAACT,TTCCATCCCTCATAGTCACTTCTAAAACT	29,29	0	0	NA	NA	NA:NA	3,3	3	TypeIII-B,TypeIII-A?,TypeIII-A,TypeIII-C,TypeIII-D	cmr6gr7,cmr5gr11,cmr4gr7,cmr3gr5,cas10,cmr1gr7,csx1,cas2,cas6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas1,cas14k,cas3HD,cas3,csa3,DEDDh	NA|330aa|up_9|NZ_CP011393.1_144259_145249_-,NA|280aa|up_2|NZ_CP011393.1_161419_162259_-,NA|185aa|up_1|NZ_CP011393.1_162328_162883_-,NA|264aa|down_0|NZ_CP011393.1_166164_166956_-,NA|136aa|down_2|NZ_CP011393.1_167688_168096_-,NA|79aa|down_5|NZ_CP011393.1_168959_169196_+,cas6|205aa|down_7|NZ_CP011393.1_169977_170592_-	NA|330aa|up_9|NZ_CP011393.1_144259_145249_-	NA	cmr6gr7|266aa|up_8|NZ_CP011393.1_154067_154865_-	cd09661, Cmr6_III-B, CRISPR/Cas system-associated RAMP superfamily protein Cmr6	cmr5gr11|119aa|up_7|NZ_CP011393.1_154857_155214_-	pfam09701, Cas_Cmr5, CRISPR-associated protein (Cas_Cmr5)	cmr4gr7|296aa|up_6|NZ_CP011393.1_155210_156098_-	COG1336, COG1336, CRISPR system related protein, RAMP superfamily [Defense mechanisms]	cmr3gr5|360aa|up_5|NZ_CP011393.1_156118_157198_-	COG1769, COG1769, CRISPR system related protein, RAMP superfamily [Defense    mechanisms]	cas10|832aa|up_4|NZ_CP011393.1_157197_159693_-	cd09679, Cas10_III, CRISPR/Cas system-associated protein Cas10	cmr1gr7|458aa|up_3|NZ_CP011393.1_159714_161088_-	COG1367, COG1367, CRISPR system related protein, RAMP superfamily [Defense mechanisms]	NA|280aa|up_2|NZ_CP011393.1_161419_162259_-	NA	NA|185aa|up_1|NZ_CP011393.1_162328_162883_-	NA	csx1|532aa|up_0|NZ_CP011393.1_163569_165165_-	cd09732, Csx1_III-U, CRISPR/Cas system-associated protein Csx1	NA|264aa|down_0|NZ_CP011393.1_166164_166956_-	NA	NA|232aa|down_1|NZ_CP011393.1_167009_167705_-	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms]	NA|136aa|down_2|NZ_CP011393.1_167688_168096_-	NA	cas2|88aa|down_3|NZ_CP011393.1_168230_168494_+	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2	cas2|93aa|down_4|NZ_CP011393.1_168499_168778_-	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2	NA|79aa|down_5|NZ_CP011393.1_168959_169196_+	NA	cas6|247aa|down_6|NZ_CP011393.1_169253_169994_-	COG1583, COG1583, CRISPR system related protein, RAMP superfamily [Defense    mechanisms]	cas6|205aa|down_7|NZ_CP011393.1_169977_170592_-	NA	csm5gr7|382aa|down_8|NZ_CP011393.1_170641_171787_-	TIGR01899, cas_TM1807_csm5, CRISPR type III-A/MTUBE-associated RAMP protein Csm5	csm4gr5|327aa|down_9|NZ_CP011393.1_171783_172764_-	TIGR01903, Hypothetical_protein
GCF_001644665.1_ASM164466v1	NZ_CP011393	Fervidobacterium pennivorans strain DYC, complete genome	3	179852-186394	6,3,3,7,8	PILER-CR,CRISPRCasFinder,CRT,PILER-CR,PILER-CR	no	csx1,cas2,cas6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas1	cmr6gr7,cmr5gr11,cmr4gr7,cmr3gr5,cas10,cmr1gr7,csx1,cas2,cas6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas1,cas14k,cas3HD,cas3,csa3,DEDDh	Type III-D,Type III-C,Type III-A,Type III-B	GTTTCCATCCCTCATAGTCACTTCTAAAAC,GTTTTAGAAGTGACTATGAGGGATGGAAAC,NNNNNNNNGTTTTAGAAGTGACTATGAGGGATGGAAAC,GGTTTCCATCCCTCATAGTCACTTCTAAAAC,GTTTCCATCCCTCATAGTCACTTCTAAAAC	30,30,38,31,30	0	0	NA	NA	NA:NA:NA:NA:NA	86,93,93,86,86	93	TypeIII-D,TypeIII-C,TypeIII-A,TypeIII-B	cmr6gr7,cmr5gr11,cmr4gr7,cmr3gr5,cas10,cmr1gr7,csx1,cas2,cas6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas1,cas14k,cas3HD,cas3,csa3,DEDDh	NA|79aa|up_9|NZ_CP011393.1_168959_169196_+,cas6|205aa|up_7|NZ_CP011393.1_169977_170592_-,NA|90aa|down_2|NZ_CP011393.1_189327_189597_+	NA|79aa|up_9|NZ_CP011393.1_168959_169196_+	NA	cas6|247aa|up_8|NZ_CP011393.1_169253_169994_-	COG1583, COG1583, CRISPR system related protein, RAMP superfamily [Defense    mechanisms]	cas6|205aa|up_7|NZ_CP011393.1_169977_170592_-	NA	csm5gr7|382aa|up_6|NZ_CP011393.1_170641_171787_-	TIGR01899, cas_TM1807_csm5, CRISPR type III-A/MTUBE-associated RAMP protein Csm5	csm4gr5|327aa|up_5|NZ_CP011393.1_171783_172764_-	TIGR01903, Hypothetical_protein	csm3gr7|242aa|up_4|NZ_CP011393.1_172828_173554_-	cd09684, Csm3_III-A, CRISPR/Cas system-associated RAMP superfamily protein Csm3	csm2gr11|157aa|up_3|NZ_CP011393.1_173568_174039_-	pfam03750, Csm2_III-A, Csm2 Type III-A	cas10|827aa|up_2|NZ_CP011393.1_174068_176549_-	cd09680, Cas10_III, CRISPR/Cas system-associated protein Cas10	cas1|330aa|up_1|NZ_CP011393.1_176563_177553_-	cd09722, Cas1_I-B, CRISPR/Cas system-associated protein Cas1	NA|534aa|up_0|NZ_CP011393.1_177641_179243_-	pfam18145, SAVED, SMODS-associated and fused to various effectors sensor domain	NA|598aa|down_0|NZ_CP011393.1_186571_188365_-	PRK00290, dnaK, molecular chaperone DnaK; Provisional	NA|254aa|down_1|NZ_CP011393.1_188518_189280_-	pfam05838, Glyco_hydro_108, Glycosyl hydrolase 108	NA|90aa|down_2|NZ_CP011393.1_189327_189597_+	NA	NA|400aa|down_3|NZ_CP011393.1_189683_190883_-	PRK07568, PRK07568, pyridoxal phosphate-dependent aminotransferase	NA|201aa|down_4|NZ_CP011393.1_190904_191507_-	pfam01205, UPF0029, Uncharacterized protein family UPF0029	NA|201aa|down_5|NZ_CP011393.1_191467_192070_-	PRK09453, PRK09453, phosphodiesterase; Provisional	NA|305aa|down_6|NZ_CP011393.1_192074_192989_-	TIGR02395, RNA_polymerase_sigma-54_factor, RNA polymerase sigma-54 factor	NA|303aa|down_7|NZ_CP011393.1_192943_193852_-	pfam04227, Indigoidine_A, Indigoidine synthase A like protein	NA|277aa|down_8|NZ_CP011393.1_194033_194864_-	pfam14343, PrcB_C, PrcB C-terminal	NA|509aa|down_9|NZ_CP011393.1_194900_196427_-	cd01949, GGDEF, Diguanylate-cyclase (DGC) or GGDEF domain
GCF_001644665.1_ASM164466v1	NZ_CP011393	Fervidobacterium pennivorans strain DYC, complete genome	4	1250555-1251644	9,4,4	PILER-CR,CRISPRCasFinder,CRT	no		cmr6gr7,cmr5gr11,cmr4gr7,cmr3gr5,cas10,cmr1gr7,csx1,cas2,cas6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas1,cas14k,cas3HD,cas3,csa3,DEDDh	Orphan	GTTTCCATCCCTCATAGTCACTTCTAAAG,CTTTAGAAGTGACTATGAGGGATGGAAAC,CTTTAGAAGTGACTATGAGGGATGGAAAC	29,29,29	0	0	NA	NA	NA:NA:NA	10,15,12	15	Orphan	cmr6gr7,cmr5gr11,cmr4gr7,cmr3gr5,cas10,cmr1gr7,csx1,cas2,cas6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas1,cas14k,cas3HD,cas3,csa3,DEDDh	NA,NA|260aa|down_3|NZ_CP011393.1_1260063_1260843_+,NA|328aa|down_5|NZ_CP011393.1_1261423_1262407_+	NA|250aa|up_9|NZ_CP011393.1_1238054_1238804_+	pfam02654, CobS, Cobalamin-5-phosphate synthase	NA|280aa|up_8|NZ_CP011393.1_1238808_1239648_+	PRK00784, PRK00784, cobyric acid synthase	NA|306aa|up_7|NZ_CP011393.1_1239654_1240572_+	pfam03186, CobD_Cbib, CobD/Cbib protein	NA|350aa|up_6|NZ_CP011393.1_1240573_1241623_+	PRK08354, PRK08354, putative aminotransferase; Provisional	NA|179aa|up_5|NZ_CP011393.1_1241619_1242156_+	pfam02572, CobA_CobO_BtuR, ATP:corrinoid adenosyltransferase BtuR/CobO/CobP	NA|56aa|up_4|NZ_CP011393.1_1242168_1242336_-	COG0619, CbiQ, ABC-type cobalt transport system, permease component CbiQ and related transporters [Inorganic ion transport and metabolism]	NA|327aa|up_3|NZ_CP011393.1_1242584_1243565_+	TIGR00571, DNA_adenine_methylase, DNA adenine methylase (dam)	NA|313aa|up_2|NZ_CP011393.1_1243557_1244496_+	pfam04556, DpnII, DpnII restriction endonuclease	NA|279aa|up_1|NZ_CP011393.1_1244483_1245320_+	TIGR01177, tRNA_guanine10-N2-dimethyltransferase, putative methyltransferase, TIGR01177 family	NA|1562aa|up_0|NZ_CP011393.1_1245396_1250082_+	COG1413, COG1413, FOG: HEAT repeat [Energy production and conversion]	NA|309aa|down_0|NZ_CP011393.1_1251766_1252693_-	cd19092, AKR_BsYcsN_EcYdhF-like, Bacillus subtilis YcsN, Escherichia coli YdhF and similar proteins	NA|1223aa|down_1|NZ_CP011393.1_1252970_1256639_+	COG1074, RecB, ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains) [DNA replication, recombination, and repair]	NA|1128aa|down_2|NZ_CP011393.1_1256635_1260019_+	pfam12705, PDDEXK_1, PD-(D/E)XK nuclease superfamily	NA|260aa|down_3|NZ_CP011393.1_1260063_1260843_+	NA	NA|175aa|down_4|NZ_CP011393.1_1260870_1261395_+	cd03427, MTH1, MutT homolog-1 (MTH1) is a member of the Nudix hydrolase superfamily	NA|328aa|down_5|NZ_CP011393.1_1261423_1262407_+	NA	NA|327aa|down_6|NZ_CP011393.1_1262357_1263338_+	pfam01555, N6_N4_Mtase, DNA methylase	NA|217aa|down_7|NZ_CP011393.1_1263374_1264025_-	cd01994, Alpha_ANH_like_IV, This is a subfamily of Adenine nucleotide alpha hydrolases superfamily	NA|274aa|down_8|NZ_CP011393.1_1264060_1264882_-	TIGR00078, Probable_nicotinate-nucleotide_pyrophosphorylase, nicotinate-nucleotide pyrophosphorylase	NA|314aa|down_9|NZ_CP011393.1_1264888_1265830_-	PRK09375, PRK09375, quinolinate synthase NadA
GCF_001644665.1_ASM164466v1	NZ_CP011393	Fervidobacterium pennivorans strain DYC, complete genome	5	1836473-1836567	5	CRISPRCasFinder	no		cmr6gr7,cmr5gr11,cmr4gr7,cmr3gr5,cas10,cmr1gr7,csx1,cas2,cas6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas1,cas14k,cas3HD,cas3,csa3,DEDDh	Orphan	GTTTTAATGCTTCAACATCACTC	23	0	0	NA	NA	NA	1	1	Orphan	cmr6gr7,cmr5gr11,cmr4gr7,cmr3gr5,cas10,cmr1gr7,csx1,cas2,cas6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas1,cas14k,cas3HD,cas3,csa3,DEDDh	NA,NA|178aa|down_7|NZ_CP011393.1_1843844_1844378_+	NA|284aa|up_9|NZ_CP011393.1_1825017_1825869_-	TIGR00950, Uncharacterized_inner_membrane_transporter_YicL, Carboxylate/Amino Acid/Amine Transporter	NA|89aa|up_8|NZ_CP011393.1_1825901_1826168_-	cd02227, cupin_TM1112-like, Thermotoga maritima TM1112 and related proteins, cupin domain	NA|215aa|up_7|NZ_CP011393.1_1826413_1827058_+	cd00501, Peptidase_C15, Pyroglutamyl peptidase (PGP) type I, also known as pyrrolidone carboxyl peptidase (pcp) type I:  Enzymes responsible for cleaving pyroglutamate (pGlu) from the N-terminal end of specialized proteins	NA|453aa|up_6|NZ_CP011393.1_1827069_1828428_-	pfam07228, SpoIIE, Stage II sporulation protein E (SpoIIE)	NA|470aa|up_5|NZ_CP011393.1_1828550_1829960_+	cd05297, GH4_alpha_glucosidase_galactosidase, Glycoside Hydrolases Family 4; Alpha-glucosidases and alpha-galactosidases	NA|511aa|up_4|NZ_CP011393.1_1830007_1831540_-	COG0497, RecN, ATPase involved in DNA repair [DNA replication, recombination, and repair]	NA|144aa|up_3|NZ_CP011393.1_1831584_1832016_-	COG0295, Cdd, Cytidine deaminase [Nucleotide transport and metabolism]	NA|442aa|up_2|NZ_CP011393.1_1831981_1833307_-	COG1253, TlyC, Hemolysins and related proteins containing CBS domains [General function prediction only]	NA|530aa|up_1|NZ_CP011393.1_1833479_1835069_+	cd01949, GGDEF, Diguanylate-cyclase (DGC) or GGDEF domain	NA|359aa|up_0|NZ_CP011393.1_1835079_1836156_-	cd08181, PPD-like, 1,3-propanediol dehydrogenase-like (PPD)	NA|346aa|down_0|NZ_CP011393.1_1837811_1838849_-	PRK00742, PRK00742, chemotaxis-specific protein-glutamate methyltransferase CheB	NA|159aa|down_1|NZ_CP011393.1_1838830_1839307_-	cd14265, UDPK_IM_like, Integral membrane undecaprenol kinase and similar enzymes	NA|201aa|down_2|NZ_CP011393.1_1839269_1839872_-	PRK08537, PRK08537, 2-oxoacid:ferredoxin oxidoreductase subunit gamma	NA|275aa|down_3|NZ_CP011393.1_1839868_1840693_-	PRK05778, PRK05778, 2-oxoglutarate ferredoxin oxidoreductase subunit beta; Validated	NA|169aa|down_4|NZ_CP011393.1_1840679_1841186_-	COG2131, ComEB, Deoxycytidylate deaminase [Nucleotide transport and metabolism]	NA|153aa|down_5|NZ_CP011393.1_1841310_1841769_+	COG0350, Ada, Methylated DNA-protein cysteine methyltransferase [DNA replication, recombination, and repair]	NA|686aa|down_6|NZ_CP011393.1_1841765_1843823_+	COG0744, MrcB, Membrane carboxypeptidase (penicillin-binding protein) [Cell envelope biogenesis, outer membrane]	NA|178aa|down_7|NZ_CP011393.1_1843844_1844378_+	NA	NA|148aa|down_8|NZ_CP011393.1_1844359_1844803_+	PRK00668, ndk, mulitfunctional nucleoside diphosphate kinase/apyrimidinic endonuclease/3'-; Validated	NA|538aa|down_9|NZ_CP011393.1_1844870_1846484_-	COG1757, NhaC, Na+/H+ antiporter [Energy production and conversion]
