assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_001641305.1_ASM164130v1	NZ_CP015516	Enterococcus hirae strain R17, complete genome	1	415104-415231	1	CRISPRCasFinder	no		cas3,DEDDh,cas2,DinG,csa3,cas14j,csn2,cas1,cas9	Orphan	TGAATCACTAAGAACGAAGTGAGTAGATGATGAACAATACTTGG	44	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,cas2,DinG,csa3,cas14j,csn2,cas1,cas9	NA|327aa|up_6|NZ_CP015516.1_407049_408030_+,NA|327aa|up_5|NZ_CP015516.1_408236_409217_+,NA|78aa|down_5|NZ_CP015516.1_420170_420404_+	NA|57aa|up_9|NZ_CP015516.1_404686_404857_+	pfam00584, SecE, SecE/Sec61-gamma subunits of protein translocation complex	NA|182aa|up_8|NZ_CP015516.1_404956_405502_+	PRK05609, nusG, transcription antitermination protein NusG; Validated	NA|295aa|up_7|NZ_CP015516.1_405745_406630_+	pfam06028, DUF915, Alpha/beta hydrolase of unknown function (DUF915)	NA|327aa|up_6|NZ_CP015516.1_407049_408030_+	NA	NA|327aa|up_5|NZ_CP015516.1_408236_409217_+	NA	NA|682aa|up_4|NZ_CP015516.1_409236_411282_-	pfam14436, EndoU_bacteria, Bacterial EndoU nuclease	NA|289aa|up_3|NZ_CP015516.1_411608_412475_-	TIGR00718, Probable_L-serine_dehydratase_alpha_chain, L-serine dehydratase, iron-sulfur-dependent, alpha subunit	NA|223aa|up_2|NZ_CP015516.1_412488_413157_-	COG1760, SdaA, L-serine deaminase [Amino acid transport and metabolism]	NA|141aa|up_1|NZ_CP015516.1_413687_414110_+	PRK00140, rplK, 50S ribosomal protein L11; Validated	NA|230aa|up_0|NZ_CP015516.1_414213_414903_+	PRK05424, rplA, 50S ribosomal protein L1; Validated	NA|168aa|down_0|NZ_CP015516.1_415286_415790_+	PRK00099, rplJ, 50S ribosomal protein L10; Reviewed	NA|123aa|down_1|NZ_CP015516.1_415842_416211_+	PRK00157, rplL, 50S ribosomal protein L7/L12; Reviewed	NA|72aa|down_2|NZ_CP015516.1_416356_416572_+	COG0379, NadA, Quinolinate synthase [Coenzyme metabolism]	NA|226aa|down_3|NZ_CP015516.1_417728_418406_+	COG0398, COG0398, Uncharacterized conserved protein [Function unknown]	NA|395aa|down_4|NZ_CP015516.1_418582_419767_+	cd17324, MFS_NepI_like, Purine ribonucleoside efflux pump NepI and similar transporters of the Major Facilitator Superfamily	NA|78aa|down_5|NZ_CP015516.1_420170_420404_+	NA	NA|109aa|down_6|NZ_CP015516.1_420404_420731_+	pfam02452, PemK_toxin, PemK-like, MazF-like toxin of type II toxin-antitoxin system	NA|510aa|down_7|NZ_CP015516.1_421072_422602_-	COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]	NA|234aa|down_8|NZ_CP015516.1_423031_423733_+	cd01399, GlcN6P_deaminase, GlcN6P_deaminase: Glucosamine-6-phosphate (GlcN6P) deaminase subfamily; GlcN6P deaminase catalyzes the reversible conversion of GlcN6P to D-fructose-6-phosphate (Fru6P) and ammonium	NA|238aa|down_9|NZ_CP015516.1_423878_424592_+	COG1285, SapB, Uncharacterized membrane protein [Function unknown]
GCF_001641305.1_ASM164130v1	NZ_CP015516	Enterococcus hirae strain R17, complete genome	2	1349472-1349772	1,2,1	PILER-CR,CRISPRCasFinder,CRT	no		cas3,DEDDh,cas2,DinG,csa3,cas14j,csn2,cas1,cas9	Orphan	GTTTTAGAGCTATGTTGTTTTGAATGCTTCCAAAAC,GTTTTAGAGCTATGTTGTTTTGAATGCTTCCAAAACA,GTTTTAGAGCTATGTTGTTTTGAATGCTTCCAAAACA	36,37,37	0	0	NA	NA	II-A,II-B:II-A,II-B:II-A,II-B	3,4,4	4	Orphan	cas3,DEDDh,cas2,DinG,csa3,cas14j,csn2,cas1,cas9	NA,NA|411aa|down_3|NZ_CP015516.1_1353431_1354664_+,NA|215aa|down_8|NZ_CP015516.1_1360198_1360843_+	NA|180aa|up_9|NZ_CP015516.1_1337716_1338256_+	PRK05205, PRK05205, bifunctional pyr operon transcriptional regulator/uracil phosphoribosyltransferase PyrR	NA|428aa|up_8|NZ_CP015516.1_1338269_1339553_+	PRK10720, PRK10720, uracil transporter; Provisional	NA|309aa|up_7|NZ_CP015516.1_1339565_1340492_+	PRK00856, pyrB, aspartate carbamoyltransferase catalytic subunit	NA|427aa|up_6|NZ_CP015516.1_1340510_1341791_+	PRK09357, pyrC, dihydroorotase; Validated	NA|359aa|up_5|NZ_CP015516.1_1341796_1342873_+	PRK12564, PRK12564, carbamoyl-phosphate synthase small subunit	NA|1062aa|up_4|NZ_CP015516.1_1342875_1346061_+	PRK05294, carB, carbamoyl-phosphate synthase large subunit	NA|259aa|up_3|NZ_CP015516.1_1346239_1347016_+	cd06218, DHOD_e_trans, FAD/NAD binding domain in the electron transfer subunit of dihydroorotate dehydrogenase	NA|310aa|up_2|NZ_CP015516.1_1347012_1347942_+	PRK07259, PRK07259, dihydroorotate dehydrogenase	NA|239aa|up_1|NZ_CP015516.1_1347938_1348655_+	PRK00230, PRK00230, orotidine-5'-phosphate decarboxylase	NA|212aa|up_0|NZ_CP015516.1_1348651_1349287_+	PRK00455, pyrE, orotate phosphoribosyltransferase; Validated	NA|214aa|down_0|NZ_CP015516.1_1350010_1350652_+	pfam12917, HD_2, HD containing hydrolase-like enzyme	NA|235aa|down_1|NZ_CP015516.1_1350683_1351388_+	cd03124, alpha_CA_prokaryotic_like, Carbonic anhydrase alpha, prokaryotic-like subfamily	NA|303aa|down_2|NZ_CP015516.1_1351384_1352293_+	COG0583, LysR, Transcriptional regulator [Transcription]	NA|411aa|down_3|NZ_CP015516.1_1353431_1354664_+	NA	NA|241aa|down_4|NZ_CP015516.1_1355775_1356498_+	cd03258, ABC_MetN_methionine_transporter, ATP-binding cassette domain of methionine transporter	NA|224aa|down_5|NZ_CP015516.1_1356494_1357166_+	COG2011, AbcD, ABC-type metal ion transport system, permease component [Inorganic ion transport and metabolism]	NA|271aa|down_6|NZ_CP015516.1_1357177_1357990_+	cd13600, PBP2_lipoprotein_like_1, Putative periplasmic-binding component of ABC-type methionine uptake transporter system-like; the type 2 periplasmic binding protein fold	NA|570aa|down_7|NZ_CP015516.1_1358286_1359996_-	pfam05833, FbpA, Fibronectin-binding protein A N-terminus (FbpA)	NA|215aa|down_8|NZ_CP015516.1_1360198_1360843_+	NA	NA|347aa|down_9|NZ_CP015516.1_1361198_1362239_+	cd06325, PBP1_ABC_unchar_transporter, type 1 periplasmic ligand-binding domain of uncharacterized ABC-type transport systems predicted to be involved in uptake of amino acids, peptides, or inorganic ions
GCF_001641305.1_ASM164130v1	NZ_CP015516	Enterococcus hirae strain R17, complete genome	3	2602307-2602727	3,2,2	CRISPRCasFinder,CRT,PILER-CR	no	csn2,cas2,cas1,cas9	cas3,DEDDh,cas2,DinG,csa3,cas14j,csn2,cas1,cas9	Type II-B,Type II-C,Type II-A	TGTTTTGGAAGCATTCAAAACAACATAGCTCTAAAAC,GTTTTGGAAGCATTCAAAACAACATAGCTCTAAAAC,GTTTTAGAGCTATGTTGTTTTGAATGCTTCCAAAAC	37,36,36	0	0	NA	NA	II-A,II-B:II-A,II-B:II-A,II-B	5,4,4	5	TypeII-B,TypeII-C,TypeII-A	cas3,DEDDh,cas2,DinG,csa3,cas14j,csn2,cas1,cas9	NA,NA|43aa|down_4|NZ_CP015516.1_2609366_2609495_+,NA|282aa|down_6|NZ_CP015516.1_2611370_2612216_-	NA|151aa|up_9|NZ_CP015516.1_2588581_2589034_-	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein	NA|200aa|up_8|NZ_CP015516.1_2589129_2589729_-	cd04672, Nudix_Hydrolase_14, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X	NA|485aa|up_7|NZ_CP015516.1_2589984_2591439_+	pfam18333, ssDNA_DBD, Non-canonical single-stranded DNA-binding domain	NA|848aa|up_6|NZ_CP015516.1_2591576_2594120_-	cd02080, P-type_ATPase_cation, P-type cation-transporting ATPase similar to Exiguobacterium aurantiacum Mna, an Na(+)-ATPase, and Synechocystis sp	NA|440aa|up_5|NZ_CP015516.1_2594229_2595549_-	COG1113, AnsP, Gamma-aminobutyrate permease and related permeases [Amino acid transport and metabolism]	NA|477aa|up_4|NZ_CP015516.1_2595565_2596996_-	TIGR03813, put_Glu_GABA_T, putative glutamate/gamma-aminobutyrate antiporter	NA|611aa|up_3|NZ_CP015516.1_2597311_2599144_-	TIGR03811, tyrosine_decarboxylase, tyrosine decarboxylase, Enterococcus type	NA|477aa|up_2|NZ_CP015516.1_2599639_2601070_+	pfam08280, HTH_Mga, M protein trans-acting positive regulator (MGA) HTH domain	NA|120aa|up_1|NZ_CP015516.1_2601304_2601664_-	pfam07784, DUF1622, Protein of unknown function (DUF1622)	NA|124aa|up_0|NZ_CP015516.1_2601653_2602025_-	pfam07784, DUF1622, Protein of unknown function (DUF1622)	csn2|220aa|down_0|NZ_CP015516.1_2602843_2603503_-	cd09758, Csn2, CRISPR/Cas system-associated protein Csn2	cas2|115aa|down_1|NZ_CP015516.1_2603492_2603837_-	COG3512, COG3512, CRISPR-associated protein, Cas2 homolog [Defense mechanisms]	cas1|289aa|down_2|NZ_CP015516.1_2603833_2604700_-	cd09720, Cas1_II, CRISPR/Cas system-associated protein Cas1	cas9|1337aa|down_3|NZ_CP015516.1_2604681_2608692_-	pfam16592, Cas9_REC, REC lobe of CRISPR-associated endonuclease Cas9	NA|43aa|down_4|NZ_CP015516.1_2609366_2609495_+	NA	NA|565aa|down_5|NZ_CP015516.1_2609548_2611243_+	PRK13977, PRK13977, myosin-cross-reactive antigen; Provisional	NA|282aa|down_6|NZ_CP015516.1_2611370_2612216_-	NA	NA|378aa|down_7|NZ_CP015516.1_2612505_2613639_+	cd08283, FDH_like_1, Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1	NA|106aa|down_8|NZ_CP015516.1_2613666_2613984_+	pfam14145, YrhK, YrhK-like protein	NA|156aa|down_9|NZ_CP015516.1_2614276_2614744_-	cd04301, NAT_SF, N-Acyltransferase superfamily: Various enzymes that characteristically catalyze the transfer of an acyl group to a substrate
GCF_001641305.1_ASM164130v1	NZ_CP015517	Enterococcus hirae strain R17 plasmid, complete sequence	1	13773-13998	1,1	CRISPRCasFinder,PILER-CR	no			Orphan	TTAGGGGAAAAAGAGAAAAAGAGA,GAGAAAAAGAGAAAAAGAGAAA	24,22	0	0	NA	NA	NA:NA	3,3	3	Orphan	cas3,DEDDh,cas2,DinG,csa3,cas14j,csn2,cas1,cas9	NA|80aa|up_6|NZ_CP015517.1_9143_9383_-,NA|75aa|up_4|NZ_CP015517.1_9897_10122_-,NA|101aa|up_2|NZ_CP015517.1_10560_10863_-,NA|111aa|up_1|NZ_CP015517.1_11453_11786_-,NA|103aa|down_1|NZ_CP015517.1_15106_15415_+,NA|98aa|down_2|NZ_CP015517.1_15507_15801_-	NA|251aa|up_9|NZ_CP015517.1_5590_6343_-	cd05827, Sortase_C, Sortase domain found in class C sortases	NA|659aa|up_8|NZ_CP015517.1_6357_8334_-	pfam16569, GramPos_pilinBB, Gram-positive pilin backbone subunit 2, Cna-B-like domain	NA|224aa|up_7|NZ_CP015517.1_8386_9058_-	cd06165, Sortase_A, Sortase domain found in class A sortases	NA|80aa|up_6|NZ_CP015517.1_9143_9383_-	NA	NA|80aa|up_5|NZ_CP015517.1_9449_9689_-	cd01540, PBP1_arabinose_binding, periplasmic L-arabinose-binding protein (ABP), a member of a family of pentose/hexose sugar-binding proteins of the type 1 periplasmic binding protein superfamily	NA|75aa|up_4|NZ_CP015517.1_9897_10122_-	NA	NA|114aa|up_3|NZ_CP015517.1_10205_10547_-	pfam17400, DUF5406, Family of unknown function (DUF5406)	NA|101aa|up_2|NZ_CP015517.1_10560_10863_-	NA	NA|111aa|up_1|NZ_CP015517.1_11453_11786_-	NA	NA|349aa|up_0|NZ_CP015517.1_12621_13668_-	pfam06970, RepA_N, Replication initiator protein A (RepA) N-terminus	NA|319aa|down_0|NZ_CP015517.1_14137_15094_+	pfam13614, AAA_31, AAA domain	NA|103aa|down_1|NZ_CP015517.1_15106_15415_+	NA	NA|98aa|down_2|NZ_CP015517.1_15507_15801_-	NA	NA|232aa|down_3|NZ_CP015517.1_16089_16785_-	pfam14163, SieB, Super-infection exclusion protein B	NA|300aa|down_4|NZ_CP015517.1_16975_17875_-	pfam14253, AbiH, Bacteriophage abortive infection AbiH	NA|200aa|down_5|NZ_CP015517.1_17937_18537_-	cd01192, INT_C_like_3, Uncharacterized site-specific tyrosine recombinase, C-terminal catalytic domain	NA|553aa|down_6|NZ_CP015517.1_18739_20398_-	TIGR04141, conserved_hypothetical_protein, sporadically distributed protein, TIGR04141 family	NA|229aa|down_7|NZ_CP015517.1_20491_21178_-	COG3316, COG3316, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|334aa|down_8|NZ_CP015517.1_21974_22976_+	pfam13702, Lysozyme_like, Lysozyme-like	NA|311aa|down_9|NZ_CP015517.1_22972_23905_+	pfam12642, TpcC, Conjugative transposon protein TcpC
