assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_001640905.1_ASM164090v1	NZ_CP013953	Staphylococcus aureus strain NCCP14558 isolate sequencing chromosome, complete genome	1	190795-190879	1	CRISPRCasFinder	no		cas3,DEDDh,DinG,csa3,RT,WYL	Orphan	TTCTACAGGCAATGCAAGTTGGGGTG	26	1	2	190821-190853|190821-190853	NZ_CP013953.1_1440026-1440058|NZ_CP013953.1_1528407-1528375	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,RT,WYL	NA|402aa|up_9|NZ_CP013953.1_179940_181146_+,NA|68aa|down_0|NZ_CP013953.1_190940_191144_-	NA|402aa|up_9|NZ_CP013953.1_179940_181146_+	NA	NA|402aa|up_8|NZ_CP013953.1_181146_182352_+	cd03794, GT4_WbuB-like, Escherichia coli WbuB and similar proteins	NA|186aa|up_7|NZ_CP013953.1_182362_182920_+	COG2148, WcaJ, Sugar transferases involved in lipopolysaccharide synthesis [Cell envelope biogenesis, outer membrane]	NA|296aa|up_6|NZ_CP013953.1_182919_183807_+	cd05232, UDP_G4E_4_SDR_e, UDP-glucose 4 epimerase, subgroup 4, extended (e) SDRs	NA|421aa|up_5|NZ_CP013953.1_183860_185123_+	COG0677, WecC, UDP-N-acetyl-D-mannosaminuronate dehydrogenase [Cell envelope biogenesis, outer membrane]	NA|382aa|up_4|NZ_CP013953.1_185199_186345_+	COG0381, WecB, UDP-N-acetylglucosamine 2-epimerase [Cell envelope biogenesis, outer membrane]	NA|109aa|up_3|NZ_CP013953.1_186409_186736_-	PRK13313, PRK13313, staphylobilin-forming heme oxygenase IsdI	NA|128aa|up_2|NZ_CP013953.1_186742_187126_-	pfam04304, DUF454, Protein of unknown function (DUF454)	NA|496aa|up_1|NZ_CP013953.1_187552_189040_+	cd07117, ALDH_StaphAldA1, Uncharacterized Staphylococcus aureus AldA1 (SACOL0154) aldehyde dehydrogenase-like	NA|320aa|up_0|NZ_CP013953.1_189686_190646_+	COG1230, CzcD, Co/Zn/Cd efflux system component [Inorganic ion transport and metabolism]	NA|68aa|down_0|NZ_CP013953.1_190940_191144_-	NA	NA|171aa|down_1|NZ_CP013953.1_191322_191835_+	pfam14026, DUF4242, Protein of unknown function (DUF4242)	NA|247aa|down_2|NZ_CP013953.1_192176_192917_+	COG1116, TauB, ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]	NA|324aa|down_3|NZ_CP013953.1_192930_193902_+	cd13553, PBP2_NrtA_CpmA_like, Substrate binding domain of ABC-type nitrate/bicarbonate transporters, a member of the type 2 periplasmic binding fold superfamily	NA|254aa|down_4|NZ_CP013953.1_193898_194660_+	COG0600, TauC, ABC-type nitrate/sulfonate/bicarbonate transport system, permease component [Inorganic ion transport and metabolism]	NA|344aa|down_5|NZ_CP013953.1_194672_195704_+	COG1960, CaiA, Acyl-CoA dehydrogenases [Lipid metabolism]	NA|120aa|down_6|NZ_CP013953.1_195920_196280_+	COG5609, COG5609, Uncharacterized conserved protein [Function unknown]	NA|342aa|down_7|NZ_CP013953.1_196453_197479_+	PRK07574, PRK07574, NAD-dependent formate dehydrogenase	NA|417aa|down_8|NZ_CP013953.1_197864_199115_+	cd17329, MFS_MdtH_MDR_like, Multidrug resistance protein MdtH and similar multidrug resistance (MDR) transporters of the Major Facilitator Superfamily	NA|2392aa|down_9|NZ_CP013953.1_199561_206737_+	PRK12467, PRK12467, peptide synthase; Provisional
GCF_001640905.1_ASM164090v1	NZ_CP013953	Staphylococcus aureus strain NCCP14558 isolate sequencing chromosome, complete genome	2	427042-427143	2	CRISPRCasFinder	no		cas3,DEDDh,DinG,csa3,RT,WYL	Orphan	TTATGAATTGAGTATTAAATTTG	23	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,RT,WYL	NA|70aa|up_9|NZ_CP013953.1_417081_417291_-,NA|128aa|up_7|NZ_CP013953.1_418115_418499_-,NA|33aa|up_1|NZ_CP013953.1_424746_424845_+,NA|221aa|down_1|NZ_CP013953.1_428233_428896_-	NA|70aa|up_9|NZ_CP013953.1_417081_417291_-	NA	NA|194aa|up_8|NZ_CP013953.1_417468_418050_+	COG0406, phoE, Broad specificity phosphatase PhoE and related phosphatases [General function prediction only]	NA|128aa|up_7|NZ_CP013953.1_418115_418499_-	NA	NA|209aa|up_6|NZ_CP013953.1_418768_419395_-	NF033193, lipo_NDxxF, NDxxF motif lipoprotein	NA|508aa|up_5|NZ_CP013953.1_419838_421362_-	PRK15317, PRK15317, alkyl hydroperoxide reductase subunit F; Provisional	NA|190aa|up_4|NZ_CP013953.1_421377_421947_-	TIGR03137, AhpC, peroxiredoxin	NA|252aa|up_3|NZ_CP013953.1_422438_423194_+	cd02146, NfsA-like, nitroreductase similar to Escherichia coli NfsA	NA|463aa|up_2|NZ_CP013953.1_423273_424662_-	COG1823, COG1823, Predicted Na+/dicarboxylate symporter [General function prediction only]	NA|33aa|up_1|NZ_CP013953.1_424746_424845_+	NA	NA|440aa|up_0|NZ_CP013953.1_425508_426828_+	COG3464, COG3464, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|319aa|down_0|NZ_CP013953.1_427159_428116_-	TIGR02168, Chromosome_partition_protein_Smc, chromosome segregation protein SMC, common bacterial type	NA|221aa|down_1|NZ_CP013953.1_428233_428896_-	NA	NA|136aa|down_2|NZ_CP013953.1_429038_429446_-	pfam11181, YflT, Heat induced stress protein YflT	NA|193aa|down_3|NZ_CP013953.1_429958_430537_+	PRK09219, PRK09219, xanthine phosphoribosyltransferase; Validated	NA|423aa|down_4|NZ_CP013953.1_430536_431805_+	TIGR03173, pbuX, xanthine permease	NA|489aa|down_5|NZ_CP013953.1_431842_433309_+	PRK05567, PRK05567, inosine 5'-monophosphate dehydrogenase; Reviewed	NA|514aa|down_6|NZ_CP013953.1_433333_434875_+	PRK00074, guaA, GMP synthase; Reviewed	NA|398aa|down_7|NZ_CP013953.1_434942_436136_-	cd01189, INT_ICEBs1_C_like, C-terminal catalytic domain of integrases from bacterial phages and conjugate transposons	NA|67aa|down_8|NZ_CP013953.1_436162_436363_-	pfam11372, DUF3173, Domain of unknown function (DUF3173)	NA|77aa|down_9|NZ_CP013953.1_436860_437091_-	pfam12645, HTH_16, Helix-turn-helix domain
GCF_001640905.1_ASM164090v1	NZ_CP013953	Staphylococcus aureus strain NCCP14558 isolate sequencing chromosome, complete genome	3	809460-809542	3	CRISPRCasFinder	no		cas3,DEDDh,DinG,csa3,RT,WYL	Orphan	CCAATTTCTACAGACAATGCAAGTTGG	27	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,RT,WYL	NA,NA|34aa|down_1|NZ_CP013953.1_811197_811299_+,NA|52aa|down_8|NZ_CP013953.1_819146_819302_+	NA|237aa|up_9|NZ_CP013953.1_794847_795558_+	COG2049, DUR1, Allophanate hydrolase subunit 1 [Amino acid transport and metabolism]	NA|335aa|up_8|NZ_CP013953.1_795541_796546_+	COG1984, DUR1, Allophanate hydrolase subunit 2 [Amino acid transport and metabolism]	NA|647aa|up_7|NZ_CP013953.1_797019_798960_+	COG1368, MdoB, Phosphoglycerol transferase and related proteins, alkaline phosphatase superfamily [Cell envelope biogenesis, outer membrane]	NA|440aa|up_6|NZ_CP013953.1_799178_800498_-	COG3464, COG3464, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|628aa|up_5|NZ_CP013953.1_800749_802633_+	COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]	NA|594aa|up_4|NZ_CP013953.1_802644_804426_+	TIGR01389, recQ, ATP-dependent DNA helicase RecQ	NA|326aa|up_3|NZ_CP013953.1_804647_805625_+	COG1125, OpuBA, ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]	NA|505aa|up_2|NZ_CP013953.1_805617_807132_+	cd13610, PBP2_ChoS, Substrate-binding domain ChoS of an osmoregulated ABC-type transporter and related proteins; type 2 periplasmic-binding protein fold	NA|353aa|up_1|NZ_CP013953.1_807371_808430_+	PRK03158, PRK03158, histidinol-phosphate aminotransferase; Provisional	NA|181aa|up_0|NZ_CP013953.1_808768_809311_+	COG4502, COG4502, 5'(3')-deoxyribonucleotidase [Nucleotide transport and metabolism]	NA|306aa|down_0|NZ_CP013953.1_810189_811107_-	COG1597, LCB5, Sphingosine kinase and enzymes related to eukaryotic diacylglycerol kinase [Lipid metabolism / General function prediction only]	NA|34aa|down_1|NZ_CP013953.1_811197_811299_+	NA	NA|502aa|down_2|NZ_CP013953.1_811376_812882_-	COG3104, PTR2, Dipeptide/tripeptide permease [Amino acid transport and metabolism]	NA|167aa|down_3|NZ_CP013953.1_813223_813724_-	COG0780, COG0780, Enzyme related to GTP cyclohydrolase I [General function prediction only]	NA|289aa|down_4|NZ_CP013953.1_813743_814610_-	COG0697, RhaT, Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]	NA|133aa|down_5|NZ_CP013953.1_815410_815809_+	COG1780, NrdI, Protein involved in ribonucleotide reduction [Nucleotide transport and metabolism]	NA|702aa|down_6|NZ_CP013953.1_815771_817877_+	PRK07632, PRK07632, ribonucleotide-diphosphate reductase subunit alpha; Validated	NA|324aa|down_7|NZ_CP013953.1_817994_818966_+	TIGR04171, ribonucleotide-diphosphate_reductase_subunit_beta, ribonucleoside-diphosphate reductase, class 1b, beta subunit	NA|52aa|down_8|NZ_CP013953.1_819146_819302_+	NA	NA|324aa|down_9|NZ_CP013953.1_819340_820312_+	COG4606, CeuB, ABC-type enterochelin transport system, permease component [Inorganic ion transport and metabolism]
GCF_001640905.1_ASM164090v1	NZ_CP013953	Staphylococcus aureus strain NCCP14558 isolate sequencing chromosome, complete genome	4	850409-850487	4	CRISPRCasFinder	no	cas3	cas3,DEDDh,DinG,csa3,RT,WYL	Unclear	TGTAGAATTTCTTTTCGAAATTCT	24	1	3	850433-850463|850433-850463|850433-850463	NZ_CP013953.1_310482-310452|NZ_CP013953.1_310427-310397|NZ_CP013953.1_1792934-1792964	NA	1	1	Unclear	cas3,DEDDh,DinG,csa3,RT,WYL	NA|35aa|up_7|NZ_CP013953.1_841284_841389_+,NA|36aa|up_5|NZ_CP013953.1_842821_842929_+,NA	NA|191aa|up_9|NZ_CP013953.1_837725_838298_+	COG1544, COG1544, Ribosome-associated protein Y (PSrp-1) [Translation, ribosomal structure and biogenesis]	NA|844aa|up_8|NZ_CP013953.1_838711_841243_+	PRK12904, PRK12904, preprotein translocase subunit SecA; Reviewed	NA|35aa|up_7|NZ_CP013953.1_841284_841389_+	NA	NA|370aa|up_6|NZ_CP013953.1_841557_842668_+	PRK00578, prfB, peptide chain release factor 2; Validated	NA|36aa|up_5|NZ_CP013953.1_842821_842929_+	NA	NA|274aa|up_4|NZ_CP013953.1_843095_843917_+	COG3942, COG3942, Surface antigen [General function prediction only]	NA|217aa|up_3|NZ_CP013953.1_844090_844741_+	pfam12917, HD_2, HD containing hydrolase-like enzyme	NA|79aa|up_2|NZ_CP013953.1_844737_844974_+	COG4897, CsbA, Uncharacterized protein conserved in bacteria [Function unknown]	NA|662aa|up_1|NZ_CP013953.1_845242_847228_+	PRK05298, PRK05298, excinuclease ABC subunit UvrB	NA|949aa|up_0|NZ_CP013953.1_847235_850082_+	PRK00349, uvrA, excinuclease ABC subunit UvrA	NA|311aa|down_0|NZ_CP013953.1_850745_851678_+	PRK05428, PRK05428, HPr kinase/phosphorylase; Provisional	NA|280aa|down_1|NZ_CP013953.1_851683_852523_+	PRK12437, PRK12437, prolipoprotein diacylglyceryl transferase; Reviewed	NA|162aa|down_2|NZ_CP013953.1_852530_853016_+	cd04647, LbH_MAT_like, Maltose O-acyltransferase (MAT)-like: This family is composed of maltose O-acetyltransferase, galactoside O-acetyltransferase (GAT), xenobiotic acyltransferase (XAT) and similar proteins	NA|480aa|down_3|NZ_CP013953.1_853023_854463_+	sd00008, TPR_YbbN, C-terminal Tetratricopeptide repeat (TPR) region of YbbN and similar motifs	NA|312aa|down_4|NZ_CP013953.1_854529_855465_+	TIGR01292, Thioredoxin_reductase, thioredoxin-disulfide reductase	NA|304aa|down_5|NZ_CP013953.1_856233_857145_+	COG1660, COG1660, Predicted P-loop-containing kinase [General function prediction only]	NA|332aa|down_6|NZ_CP013953.1_857141_858137_+	TIGR01826, Putative_gluconeogenesis_factor, conserved hypothetical protein, cofD-related	NA|315aa|down_7|NZ_CP013953.1_858247_859192_+	TIGR00647, DNA_bind_WhiA, DNA-binding protein WhiA	NA|196aa|down_8|NZ_CP013953.1_859755_860343_+	PRK00277, clpP, ATP-dependent Clp protease proteolytic subunit; Reviewed	NA|301aa|down_9|NZ_CP013953.1_860585_861488_-	COG1090, COG1090, Predicted nucleoside-diphosphate sugar epimerase [General function prediction only]
GCF_001640905.1_ASM164090v1	NZ_CP013953	Staphylococcus aureus strain NCCP14558 isolate sequencing chromosome, complete genome	5	855867-855957	5	CRISPRCasFinder	no	cas3	cas3,DEDDh,DinG,csa3,RT,WYL	Unclear	TCTGTGTTGGGGCCCACACCCCAACTCGCATTG	33	1	14	855900-855924|855900-855924|855900-855924|855900-855924|855900-855924|855900-855924|855900-855924|855900-855924|855900-855924|855900-855924|855900-855924|855900-855924|855900-855924|855900-855924	NZ_CP013953.1_190803-190779|NZ_CP013953.1_310398-310374|NZ_CP013953.1_310508-310484|NZ_CP013953.1_678498-678474|NZ_CP013953.1_808501-808525|NZ_CP013953.1_916453-916477|NZ_CP013953.1_1439950-1439926|NZ_CP013953.1_1755850-1755874|NZ_CP013953.1_1771750-1771726|NZ_CP013953.1_2140024-2140048|NZ_CP013953.1_310453-310429|NZ_CP013953.1_986496-986520|NZ_CP013953.1_1792789-1792813|NZ_CP013953.1_1793022-1793046	NA	1	1	Unclear	cas3,DEDDh,DinG,csa3,RT,WYL	NA,NA	NA|274aa|up_9|NZ_CP013953.1_843095_843917_+	COG3942, COG3942, Surface antigen [General function prediction only]	NA|217aa|up_8|NZ_CP013953.1_844090_844741_+	pfam12917, HD_2, HD containing hydrolase-like enzyme	NA|79aa|up_7|NZ_CP013953.1_844737_844974_+	COG4897, CsbA, Uncharacterized protein conserved in bacteria [Function unknown]	NA|662aa|up_6|NZ_CP013953.1_845242_847228_+	PRK05298, PRK05298, excinuclease ABC subunit UvrB	NA|949aa|up_5|NZ_CP013953.1_847235_850082_+	PRK00349, uvrA, excinuclease ABC subunit UvrA	NA|311aa|up_4|NZ_CP013953.1_850745_851678_+	PRK05428, PRK05428, HPr kinase/phosphorylase; Provisional	NA|280aa|up_3|NZ_CP013953.1_851683_852523_+	PRK12437, PRK12437, prolipoprotein diacylglyceryl transferase; Reviewed	NA|162aa|up_2|NZ_CP013953.1_852530_853016_+	cd04647, LbH_MAT_like, Maltose O-acyltransferase (MAT)-like: This family is composed of maltose O-acetyltransferase, galactoside O-acetyltransferase (GAT), xenobiotic acyltransferase (XAT) and similar proteins	NA|480aa|up_1|NZ_CP013953.1_853023_854463_+	sd00008, TPR_YbbN, C-terminal Tetratricopeptide repeat (TPR) region of YbbN and similar motifs	NA|312aa|up_0|NZ_CP013953.1_854529_855465_+	TIGR01292, Thioredoxin_reductase, thioredoxin-disulfide reductase	NA|304aa|down_0|NZ_CP013953.1_856233_857145_+	COG1660, COG1660, Predicted P-loop-containing kinase [General function prediction only]	NA|332aa|down_1|NZ_CP013953.1_857141_858137_+	TIGR01826, Putative_gluconeogenesis_factor, conserved hypothetical protein, cofD-related	NA|315aa|down_2|NZ_CP013953.1_858247_859192_+	TIGR00647, DNA_bind_WhiA, DNA-binding protein WhiA	NA|196aa|down_3|NZ_CP013953.1_859755_860343_+	PRK00277, clpP, ATP-dependent Clp protease proteolytic subunit; Reviewed	NA|301aa|down_4|NZ_CP013953.1_860585_861488_-	COG1090, COG1090, Predicted nucleoside-diphosphate sugar epimerase [General function prediction only]	NA|210aa|down_5|NZ_CP013953.1_862190_862820_+	PRK00409, PRK00409, recombination and DNA strand exchange inhibitor protein; Reviewed	NA|338aa|down_6|NZ_CP013953.1_863576_864590_+	COG2390, DeoR, Transcriptional regulator, contains sigma factor-related N-terminal domain [Transcription]	NA|337aa|down_7|NZ_CP013953.1_864642_865653_+	TIGR01534, Glyceraldehyde-3-phosphate_dehydrogenase, glyceraldehyde-3-phosphate dehydrogenase, type I	NA|397aa|down_8|NZ_CP013953.1_865791_866982_+	PRK00073, pgk, phosphoglycerate kinase; Provisional	NA|254aa|down_9|NZ_CP013953.1_867103_867865_+	PRK00042, tpiA, triosephosphate isomerase; Provisional
GCF_001640905.1_ASM164090v1	NZ_CP013953	Staphylococcus aureus strain NCCP14558 isolate sequencing chromosome, complete genome	6	863061-863140	6	CRISPRCasFinder	no		cas3,DEDDh,DinG,csa3,RT,WYL	Orphan	CAGCTTCTGTGTTGGGGCCCCGCC	24	1	6	863085-863116|863085-863116|863085-863116|863085-863116|863085-863116|863085-863116	NZ_CP013953.1_91043-91074|NZ_CP013953.1_916710-916741|NZ_CP013953.1_1771819-1771788|NZ_CP013953.1_2241697-2241666|NZ_CP013953.1_2639123-2639154|NZ_CP013953.1_1440134-1440103	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,RT,WYL	NA,NA|153aa|down_6|NZ_CP013953.1_871157_871616_+	NA|280aa|up_9|NZ_CP013953.1_851683_852523_+	PRK12437, PRK12437, prolipoprotein diacylglyceryl transferase; Reviewed	NA|162aa|up_8|NZ_CP013953.1_852530_853016_+	cd04647, LbH_MAT_like, Maltose O-acyltransferase (MAT)-like: This family is composed of maltose O-acetyltransferase, galactoside O-acetyltransferase (GAT), xenobiotic acyltransferase (XAT) and similar proteins	NA|480aa|up_7|NZ_CP013953.1_853023_854463_+	sd00008, TPR_YbbN, C-terminal Tetratricopeptide repeat (TPR) region of YbbN and similar motifs	NA|312aa|up_6|NZ_CP013953.1_854529_855465_+	TIGR01292, Thioredoxin_reductase, thioredoxin-disulfide reductase	NA|304aa|up_5|NZ_CP013953.1_856233_857145_+	COG1660, COG1660, Predicted P-loop-containing kinase [General function prediction only]	NA|332aa|up_4|NZ_CP013953.1_857141_858137_+	TIGR01826, Putative_gluconeogenesis_factor, conserved hypothetical protein, cofD-related	NA|315aa|up_3|NZ_CP013953.1_858247_859192_+	TIGR00647, DNA_bind_WhiA, DNA-binding protein WhiA	NA|196aa|up_2|NZ_CP013953.1_859755_860343_+	PRK00277, clpP, ATP-dependent Clp protease proteolytic subunit; Reviewed	NA|301aa|up_1|NZ_CP013953.1_860585_861488_-	COG1090, COG1090, Predicted nucleoside-diphosphate sugar epimerase [General function prediction only]	NA|210aa|up_0|NZ_CP013953.1_862190_862820_+	PRK00409, PRK00409, recombination and DNA strand exchange inhibitor protein; Reviewed	NA|338aa|down_0|NZ_CP013953.1_863576_864590_+	COG2390, DeoR, Transcriptional regulator, contains sigma factor-related N-terminal domain [Transcription]	NA|337aa|down_1|NZ_CP013953.1_864642_865653_+	TIGR01534, Glyceraldehyde-3-phosphate_dehydrogenase, glyceraldehyde-3-phosphate dehydrogenase, type I	NA|397aa|down_2|NZ_CP013953.1_865791_866982_+	PRK00073, pgk, phosphoglycerate kinase; Provisional	NA|254aa|down_3|NZ_CP013953.1_867103_867865_+	PRK00042, tpiA, triosephosphate isomerase; Provisional	NA|506aa|down_4|NZ_CP013953.1_867867_869385_+	PRK05434, PRK05434, 2,3-bisphosphoglycerate-independent phosphoglycerate mutase	NA|435aa|down_5|NZ_CP013953.1_869514_870819_+	PRK00077, eno, enolase; Provisional	NA|153aa|down_6|NZ_CP013953.1_871157_871616_+	NA	NA|78aa|down_7|NZ_CP013953.1_871682_871916_+	COG1314, SecG, Preprotein translocase subunit SecG [Intracellular trafficking and secretion]	NA|247aa|down_8|NZ_CP013953.1_872031_872772_+	COG1647, COG1647, Esterase/lipase [General function prediction only]	NA|791aa|down_9|NZ_CP013953.1_872805_875178_+	TIGR02063, Ribonuclease_R, ribonuclease R
GCF_001640905.1_ASM164090v1	NZ_CP013953	Staphylococcus aureus strain NCCP14558 isolate sequencing chromosome, complete genome	7	916380-916461	7	CRISPRCasFinder	no		cas3,DEDDh,DinG,csa3,RT,WYL	Orphan	CCCCAACTTGCATTGTCTGTAGAA	24	1	1	916404-916437	NZ_CP013953.1_1440058-1440025	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,RT,WYL	NA,NA	NA|194aa|up_9|NZ_CP013953.1_909482_910064_+	COG0406, phoE, Broad specificity phosphatase PhoE and related phosphatases [General function prediction only]	NA|206aa|up_8|NZ_CP013953.1_910136_910754_-	COG1279, COG1279, Lysine efflux permease [General function prediction only]	NA|165aa|up_7|NZ_CP013953.1_910908_911403_-	pfam13420, Acetyltransf_4, Acetyltransferase (GNAT) domain	NA|141aa|up_6|NZ_CP013953.1_911801_912224_-	TIGR03561, organ_hyd_perox, peroxiredoxin, Ohr subfamily	NA|239aa|up_5|NZ_CP013953.1_912371_913088_+	PRK13575, PRK13575, type I 3-dehydroquinate dehydratase	NA|180aa|up_4|NZ_CP013953.1_913170_913710_+	cd02135, YdjA-like, nitroreductase family protein similar to Escherichia coli YdjA	NA|107aa|up_3|NZ_CP013953.1_913860_914181_-	cd02947, TRX_family, TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains	NA|119aa|up_2|NZ_CP013953.1_914324_914681_+	cd03036, ArsC_like, Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC	NA|127aa|up_1|NZ_CP013953.1_914838_915219_+	PRK01202, PRK01202, glycine cleavage system protein GcvH	NA|293aa|up_0|NZ_CP013953.1_915397_916276_+	COG3878, COG3878, Uncharacterized protein conserved in bacteria [Function unknown]	NA|129aa|down_0|NZ_CP013953.1_917072_917459_+	COG1658, COG1658, Small primase-like proteins (Toprim domain) [DNA replication, recombination, and repair]	NA|99aa|down_1|NZ_CP013953.1_917451_917748_+	cd02947, TRX_family, TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains	NA|342aa|down_2|NZ_CP013953.1_917997_919023_+	COG1135, AbcC, ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]	NA|232aa|down_3|NZ_CP013953.1_919015_919711_+	COG2011, AbcD, ABC-type metal ion transport system, permease component [Inorganic ion transport and metabolism]	NA|274aa|down_4|NZ_CP013953.1_919728_920550_+	COG1464, NlpA, ABC-type metal ion transport system, periplasmic component/surface antigen [Inorganic ion transport and metabolism]	NA|65aa|down_5|NZ_CP013953.1_920903_921098_+	COG3237, COG3237, Uncharacterized protein conserved in bacteria [Function unknown]	NA|284aa|down_6|NZ_CP013953.1_921331_922183_-	COG2035, COG2035, Predicted membrane protein [Function unknown]	NA|254aa|down_7|NZ_CP013953.1_922510_923272_+	COG0396, sufC, Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]	NA|436aa|down_8|NZ_CP013953.1_923369_924677_+	COG0719, SufB, Cysteine desulfurase activator SufB [Posttranslational modification, protein turnover, chaperones]	NA|417aa|down_9|NZ_CP013953.1_924782_926033_+	TIGR01979, Probable_cysteine_desulfurase, cysteine desulfurases, SufSfamily
GCF_001640905.1_ASM164090v1	NZ_CP013953	Staphylococcus aureus strain NCCP14558 isolate sequencing chromosome, complete genome	8	2199622-2199703	8	CRISPRCasFinder	no		cas3,DEDDh,DinG,csa3,RT,WYL	Orphan	GGCCCCCACCCCAACTTACATTGT	24	1	5	2199646-2199679|2199646-2199679|2199646-2199679|2199646-2199679|2199646-2199679	NZ_CP013953.1_850408-850441|NZ_CP013953.1_1226345-1226312|NZ_CP013953.1_1885196-1885163|NZ_CP013953.1_1444399-1444432|NZ_CP013953.1_2914436-2914469	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,RT,WYL	NA|59aa|up_8|NZ_CP013953.1_2190014_2190191_-,NA|33aa|up_7|NZ_CP013953.1_2190433_2190532_-,NA|114aa|down_7|NZ_CP013953.1_2208842_2209184_-	NA|127aa|up_9|NZ_CP013953.1_2189376_2189757_-	COG1725, COG1725, Predicted transcriptional regulators [Transcription]	NA|59aa|up_8|NZ_CP013953.1_2190014_2190191_-	NA	NA|33aa|up_7|NZ_CP013953.1_2190433_2190532_-	NA	NA|429aa|up_6|NZ_CP013953.1_2190731_2192018_+	PRK08637, PRK08637, hypothetical protein; Provisional	NA|97aa|up_5|NZ_CP013953.1_2192296_2192587_-	pfam03642, MAP, MAP domain	NA|478aa|up_4|NZ_CP013953.1_2192597_2194031_-	pfam03642, MAP, MAP domain	NA|345aa|up_3|NZ_CP013953.1_2194376_2195411_+	TIGR03395, Sphingomyelinase_C, sphingomyelin phosphodiesterase	NA|339aa|up_2|NZ_CP013953.1_2195648_2196665_-	pfam07968, Leukocidin, Leukocidin/Hemolysin toxin family	NA|352aa|up_1|NZ_CP013953.1_2196686_2197742_-	pfam07968, Leukocidin, Leukocidin/Hemolysin toxin family	NA|408aa|up_0|NZ_CP013953.1_2198177_2199401_+	PRK08588, PRK08588, succinyl-diaminopimelate desuccinylase; Reviewed	NA|436aa|down_0|NZ_CP013953.1_2199844_2201152_+	TIGR00933, Trk_system_potassium_uptake_protein_trkH	NA|241aa|down_1|NZ_CP013953.1_2202168_2202891_+	pfam02876, Stap_Strp_tox_C, Staphylococcal/Streptococcal toxin, beta-grasp domain	NA|267aa|down_2|NZ_CP013953.1_2203059_2203860_-	pfam02876, Stap_Strp_tox_C, Staphylococcal/Streptococcal toxin, beta-grasp domain	NA|391aa|down_3|NZ_CP013953.1_2204185_2205358_+	pfam00872, Transposase_mut, Transposase, Mutator family	NA|187aa|down_4|NZ_CP013953.1_2205979_2206540_+	cd15783, SA1633_like, Uncharacterized protein family conserved in Staphylococci	NA|235aa|down_5|NZ_CP013953.1_2207417_2208122_+	PRK13038, PRK13038, superantigen-like protein; Reviewed	NA|190aa|down_6|NZ_CP013953.1_2208276_2208846_-	COG3728, XtmA, Phage terminase, small subunit [DNA replication, recombination, and repair]	NA|114aa|down_7|NZ_CP013953.1_2208842_2209184_-	NA	NA|176aa|down_8|NZ_CP013953.1_2209186_2209714_-	COG5577, COG5577, Spore coat protein [Cell envelope biogenesis, outer membrane]	NA|73aa|down_9|NZ_CP013953.1_2209764_2209983_-	pfam16722, SAPIS-gp6, Pathogenicity island protein gp6 in Staphylococcus
GCF_001640905.1_ASM164090v1	NZ_CP013953	Staphylococcus aureus strain NCCP14558 isolate sequencing chromosome, complete genome	9	2216599-2216687	9	CRISPRCasFinder	no		cas3,DEDDh,DinG,csa3,RT,WYL	Orphan	GTTTTTGACTGACTTCTCAATCA	23	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,RT,WYL	NA|114aa|up_9|NZ_CP013953.1_2210590_2210932_-,NA|127aa|up_7|NZ_CP013953.1_2212019_2212400_-,NA|50aa|up_3|NZ_CP013953.1_2215695_2215845_-,NA|49aa|up_2|NZ_CP013953.1_2215897_2216044_-,NA	NA|114aa|up_9|NZ_CP013953.1_2210590_2210932_-	NA	NA|214aa|up_8|NZ_CP013953.1_2211381_2212023_-	pfam16560, SAPI, Putative mobile pathogenicity island	NA|127aa|up_7|NZ_CP013953.1_2212019_2212400_-	NA	NA|570aa|up_6|NZ_CP013953.1_2212709_2214419_-	COG5519, COG5519, Superfamily II helicase and inactivated derivatives [DNA replication, recombination, and repair]	NA|290aa|up_5|NZ_CP013953.1_2214432_2215302_-	smart00942, PriCT_1, Primase C terminal 1 (PriCT-1)	NA|109aa|up_4|NZ_CP013953.1_2215366_2215693_-	pfam07342, DUF1474, Protein of unknown function (DUF1474)	NA|50aa|up_3|NZ_CP013953.1_2215695_2215845_-	NA	NA|49aa|up_2|NZ_CP013953.1_2215897_2216044_-	NA	NA|106aa|up_1|NZ_CP013953.1_2216040_2216358_-	TIGR01764, Probable_excisionase, DNA binding domain, excisionase family	NA|73aa|up_0|NZ_CP013953.1_2216362_2216581_-	smart00530, HTH_XRE, Helix-turn-helix XRE-family like proteins	NA|225aa|down_0|NZ_CP013953.1_2216753_2217428_+	pfam13443, HTH_26, Cro/C1-type HTH DNA-binding domain	NA|391aa|down_1|NZ_CP013953.1_2217441_2218614_+	cd01189, INT_ICEBs1_C_like, C-terminal catalytic domain of integrases from bacterial phages and conjugate transposons	NA|539aa|down_2|NZ_CP013953.1_2218682_2220299_-	PRK00013, groEL, chaperonin GroEL; Reviewed	NA|95aa|down_3|NZ_CP013953.1_2220374_2220659_-	PRK00364, groES, co-chaperonin GroES; Reviewed	NA|248aa|down_4|NZ_CP013953.1_2220833_2221577_+	pfam02517, Abi, CAAX protease self-immunity	NA|390aa|down_5|NZ_CP013953.1_2221601_2222771_-	PHA03247, PHA03247, large tegument protein UL36; Provisional	NA|262aa|down_6|NZ_CP013953.1_2223955_2224741_+	cd07583, nitrilase_5, Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases)	NA|45aa|down_7|NZ_CP013953.1_2225340_2225475_-	PRK14752, PRK14752, delta-lysin family phenol-soluble modulin	NA|188aa|down_8|NZ_CP013953.1_2225710_2226274_+	COG4512, AgrB, Membrane protein putatively involved in post-translational modification of the autoinducing quorum-sensing peptide [Posttranslational modification, protein turnover, chaperones / Signal transduction mechanisms / Transcription]	NA|48aa|down_9|NZ_CP013953.1_2226276_2226420_+	smart00794, AgrD, Staphylococcal AgrD protein
GCF_001640905.1_ASM164090v1	NZ_CP013953	Staphylococcus aureus strain NCCP14558 isolate sequencing chromosome, complete genome	10	2346847-2346927	10	CRISPRCasFinder	no	csa3	cas3,DEDDh,DinG,csa3,RT,WYL	Type I-A	CAACTTTAGTTGTTAGGGGCTCTT	24	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,RT,WYL	NA|77aa|up_5|NZ_CP013953.1_2341721_2341952_-,NA|364aa|up_0|NZ_CP013953.1_2345738_2346830_+,NA|35aa|down_0|NZ_CP013953.1_2347262_2347367_-,NA|53aa|down_1|NZ_CP013953.1_2348046_2348205_+	NA|237aa|up_9|NZ_CP013953.1_2337332_2338043_+	PRK05819, deoD, DeoD-type purine-nucleoside phosphorylase	NA|148aa|up_8|NZ_CP013953.1_2338163_2338607_-	COG0783, Dps, DNA-binding ferritin-like protein (oxidative damage protectant) [Inorganic ion transport and metabolism]	NA|138aa|up_7|NZ_CP013953.1_2338806_2339220_-	COG3011, COG3011, Predicted thiol-disulfide oxidoreductase [General function    prediction only]	NA|458aa|up_6|NZ_CP013953.1_2339676_2341050_-	pfam01878, EVE, EVE domain	NA|77aa|up_5|NZ_CP013953.1_2341721_2341952_-	NA	NA|313aa|up_4|NZ_CP013953.1_2341982_2342921_-	COG1482, ManA, Phosphomannose isomerase [Carbohydrate transport and metabolism]	NA|222aa|up_3|NZ_CP013953.1_2343356_2344022_-	cd05243, SDR_a5, atypical (a) SDRs, subgroup 5	csa3|107aa|up_2|NZ_CP013953.1_2344173_2344494_+	cd00090, HTH_ARSR, Arsenical Resistance Operon Repressor and similar prokaryotic, metal regulated homodimeric repressors	NA|326aa|up_1|NZ_CP013953.1_2344495_2345473_+	COG1230, CzcD, Co/Zn/Cd efflux system component [Inorganic ion transport and metabolism]	NA|364aa|up_0|NZ_CP013953.1_2345738_2346830_+	NA	NA|35aa|down_0|NZ_CP013953.1_2347262_2347367_-	NA	NA|53aa|down_1|NZ_CP013953.1_2348046_2348205_+	NA	NA|286aa|down_2|NZ_CP013953.1_2348862_2349720_-	COG0561, Cof, Predicted hydrolases of the HAD superfamily [General function prediction only]	NA|261aa|down_3|NZ_CP013953.1_2349787_2350570_-	COG1119, ModF, ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]	NA|602aa|down_4|NZ_CP013953.1_2350801_2352607_-	PRK00331, PRK00331, isomerizing glutamine--fructose-6-phosphate transaminase	NA|513aa|down_5|NZ_CP013953.1_2353287_2354826_+	COG2213, MtlA, Phosphotransferase system, mannitol-specific IIBC component [Carbohydrate transport and metabolism]	NA|711aa|down_6|NZ_CP013953.1_2354860_2356993_+	COG3711, BglG, Transcriptional antiterminator [Transcription]	NA|145aa|down_7|NZ_CP013953.1_2357004_2357439_+	COG4668, MtlA, Mannitol/fructose-specific phosphotransferase system, IIA domain [Carbohydrate transport and metabolism]	NA|369aa|down_8|NZ_CP013953.1_2357438_2358545_+	PRK02318, PRK02318, mannitol-1-phosphate 5-dehydrogenase; Provisional	NA|2482aa|down_9|NZ_CP013953.1_2358863_2366309_-	TIGR04263, cell_wall_surface_anchor_family_protein, SasC/Mrp/FmtB intercellular aggregation domain
GCF_001640905.1_ASM164090v1	NZ_CP013953	Staphylococcus aureus strain NCCP14558 isolate sequencing chromosome, complete genome	11	2359168-2359253	11	CRISPRCasFinder	no	csa3	cas3,DEDDh,DinG,csa3,RT,WYL	Type I-A	CCAACTGATTTTTGCGTATCATTAGT	26	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,RT,WYL	NA|364aa|up_9|NZ_CP013953.1_2345738_2346830_+,NA|35aa|up_8|NZ_CP013953.1_2347262_2347367_-,NA|53aa|up_7|NZ_CP013953.1_2348046_2348205_+,NA	NA|364aa|up_9|NZ_CP013953.1_2345738_2346830_+	NA	NA|35aa|up_8|NZ_CP013953.1_2347262_2347367_-	NA	NA|53aa|up_7|NZ_CP013953.1_2348046_2348205_+	NA	NA|286aa|up_6|NZ_CP013953.1_2348862_2349720_-	COG0561, Cof, Predicted hydrolases of the HAD superfamily [General function prediction only]	NA|261aa|up_5|NZ_CP013953.1_2349787_2350570_-	COG1119, ModF, ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]	NA|602aa|up_4|NZ_CP013953.1_2350801_2352607_-	PRK00331, PRK00331, isomerizing glutamine--fructose-6-phosphate transaminase	NA|513aa|up_3|NZ_CP013953.1_2353287_2354826_+	COG2213, MtlA, Phosphotransferase system, mannitol-specific IIBC component [Carbohydrate transport and metabolism]	NA|711aa|up_2|NZ_CP013953.1_2354860_2356993_+	COG3711, BglG, Transcriptional antiterminator [Transcription]	NA|145aa|up_1|NZ_CP013953.1_2357004_2357439_+	COG4668, MtlA, Mannitol/fructose-specific phosphotransferase system, IIA domain [Carbohydrate transport and metabolism]	NA|369aa|up_0|NZ_CP013953.1_2357438_2358545_+	PRK02318, PRK02318, mannitol-1-phosphate 5-dehydrogenase; Provisional	NA|452aa|down_0|NZ_CP013953.1_2366586_2367942_-	PRK14316, glmM, phosphoglucosamine mutase; Provisional	NA|311aa|down_1|NZ_CP013953.1_2367968_2368901_-	COG4856, COG4856, Uncharacterized protein conserved in bacteria [Function unknown]	NA|270aa|down_2|NZ_CP013953.1_2368902_2369712_-	COG1624, COG1624, Uncharacterized conserved protein [Function unknown]	NA|303aa|down_3|NZ_CP013953.1_2369900_2370809_-	cd09989, Arginase, Arginase family	NA|355aa|down_4|NZ_CP013953.1_2377049_2378114_-	pfam10609, ParA, NUBPL iron-transfer P-loop NTPase	NA|481aa|down_5|NZ_CP013953.1_2378261_2379704_-	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily	NA|158aa|down_6|NZ_CP013953.1_2380026_2380500_-	pfam17080, SepA, Multidrug Resistance efflux pump	NA|448aa|down_7|NZ_CP013953.1_2380598_2381942_-	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily	NA|228aa|down_8|NZ_CP013953.1_2382118_2382802_-	COG1272, COG1272, Predicted membrane protein, hemolysin III homolog [General function prediction only]	NA|396aa|down_9|NZ_CP013953.1_2382820_2384008_-	cd04193, UDPGlcNAc_PPase, UDPGlcNAc pyrophosphorylase catalayzes the synthesis of UDPGlcNAc
GCF_001640905.1_ASM164090v1	NZ_CP013953	Staphylococcus aureus strain NCCP14558 isolate sequencing chromosome, complete genome	12	2471144-2471224	12	CRISPRCasFinder	no		cas3,DEDDh,DinG,csa3,RT,WYL	Orphan	TCTATGTTGGGGCCCCGCCAACTTG	25	1	13	2471169-2471199|2471169-2471199|2471169-2471199|2471169-2471199|2471169-2471199|2471169-2471199|2471169-2471199|2471169-2471199|2471169-2471199|2471169-2471199|2471169-2471199|2471169-2471199|2471169-2471199	NZ_CP013953.1_863035-863065|NZ_CP013953.1_91049-91079|NZ_CP013953.1_386814-386784|NZ_CP013953.1_678562-678532|NZ_CP013953.1_916716-916746|NZ_CP013953.1_1085158-1085188|NZ_CP013953.1_1231943-1231913|NZ_CP013953.1_1440014-1439984|NZ_CP013953.1_1528419-1528449|NZ_CP013953.1_1771813-1771783|NZ_CP013953.1_2137156-2137186|NZ_CP013953.1_2460368-2460398|NZ_CP013953.1_2639129-2639159	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,RT,WYL	NA|55aa|up_9|NZ_CP013953.1_2461677_2461842_+,NA|106aa|up_8|NZ_CP013953.1_2462086_2462404_+,NA|84aa|up_5|NZ_CP013953.1_2467525_2467777_+,NA|62aa|up_0|NZ_CP013953.1_2470916_2471102_+,NA	NA|55aa|up_9|NZ_CP013953.1_2461677_2461842_+	NA	NA|106aa|up_8|NZ_CP013953.1_2462086_2462404_+	NA	NA|1056aa|up_7|NZ_CP013953.1_2462587_2465755_-	COG0841, AcrB, Cation/multidrug efflux pump [Defense mechanisms]	NA|422aa|up_6|NZ_CP013953.1_2465871_2467137_-	COG2348, COG2348, Peptidoglycan interpeptide bridge formation enzyme [Cell wall/membrane/envelope biogenesis]	NA|84aa|up_5|NZ_CP013953.1_2467525_2467777_+	NA	NA|255aa|up_4|NZ_CP013953.1_2467768_2468533_-	pfam13468, Glyoxalase_3, Glyoxalase-like domain	NA|147aa|up_3|NZ_CP013953.1_2468694_2469135_+	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein	NA|404aa|up_2|NZ_CP013953.1_2469127_2470339_+	cd17489, MFS_YfcJ_like, Escherichia coli YfcJ, YhhS, and similar transporters of the Major Facilitator Superfamily	NA|117aa|up_1|NZ_CP013953.1_2470440_2470791_-	TIGR01889, Pleiotropic_Regulator_Of_Virulence, staphylococcal accessory regulator family	NA|62aa|up_0|NZ_CP013953.1_2470916_2471102_+	NA	NA|341aa|down_0|NZ_CP013953.1_2471367_2472390_-	TIGR02666, Cyclic_pyranopterin_monophosphate_synthase, molybdenum cofactor biosynthesis protein A, bacterial	NA|200aa|down_1|NZ_CP013953.1_2472409_2473009_-	PRK00317, mobA, molybdopterin-guanine dinucleotide biosynthesis protein MobA; Reviewed	NA|78aa|down_2|NZ_CP013953.1_2473015_2473249_-	cd00754, Ubl_MoaD, ubiquitin-like (Ubl) domain found in molybdenum cofactor biosynthesis protein D (MoaD) and similar proteins	NA|149aa|down_3|NZ_CP013953.1_2473254_2473701_-	COG0314, MoaE, Molybdopterin converting factor, large subunit [Coenzyme metabolism]	NA|162aa|down_4|NZ_CP013953.1_2473714_2474200_-	COG1763, MobB, Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism]	NA|420aa|down_5|NZ_CP013953.1_2474196_2475456_-	cd00887, MoeA, MoeA family	NA|165aa|down_6|NZ_CP013953.1_2475518_2476013_+	PRK09364, moaC, cyclic pyranopterin monophosphate synthase MoaC	NA|169aa|down_7|NZ_CP013953.1_2476014_2476521_-	COG0521, MoaB, Molybdopterin biosynthesis enzymes [Coenzyme metabolism]	NA|335aa|down_8|NZ_CP013953.1_2476551_2477556_-	PRK07688, PRK07688, thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated	NA|202aa|down_9|NZ_CP013953.1_2477726_2478332_-	COG4148, ModC, ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]
