The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP013953	Staphylococcus aureus strain NCCP14558 isolate sequencing chromosome, complete genome	2955147	12792	73960	2955147	integrase,tRNA,transposase	Bacillus_phage(30.77%)	49	11032:11048	75694:75710
11032:11048	attL	ATTATTGAAAATGAGGA	NA	NA	NA	NA
WP_000884332.1|12792_14079_+|tRNA	serine--tRNA ligase	tRNA	A0A1B1IVT2	uncultured_Mediterranean_phage	50.9	4.5e-88
WP_000190726.1|14729_15425_+	AzlC family ABC transporter permease	NA	NA	NA	NA	NA
WP_000628051.1|15421_15751_+	AzlD domain-containing protein	NA	NA	NA	NA	NA
WP_000186490.1|16113_17082_+	alpha/beta fold hydrolase	NA	NA	NA	NA	NA
WP_001800884.1|17374_18313_+	YybS family protein	NA	NA	NA	NA	NA
WP_001081640.1|18327_20295_+	cyclic-di-AMP phosphodiesterase GdpP	NA	NA	NA	NA	NA
WP_000864305.1|20291_20738_+	50S ribosomal protein L9	NA	NA	NA	NA	NA
WP_000375647.1|20769_22170_+	replicative DNA helicase	NA	A0A1P8VVQ6	Streptococcus_phage	48.1	5.4e-111
WP_000095328.1|22447_23731_+	adenylosuccinate synthase	NA	L7Y4J5	Megavirus	34.6	1.8e-68
WP_000101976.1|24933_25635_+	response regulator transcription factor	NA	W8CYM9	Bacillus_phage	39.2	3.5e-42
WP_063663379.1|25647_27474_+	cell wall metabolism sensor histidine kinase WalK	NA	W8CYF6	Bacillus_phage	30.9	1.0e-29
WP_001060140.1|27466_28801_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001104165.1|28801_29590_+	two-component system regulatory protein YycI	NA	NA	NA	NA	NA
WP_000088649.1|29978_30779_+	MBL fold metallo-hydrolase	NA	A0A0C5AJ83	Bacteriophage	35.9	1.0e-37
WP_000645787.1|31005_33324_+	LPXTG-anchored adenosine synthase AdsA	NA	NA	NA	NA	NA
WP_000704775.1|33691_34171_+	23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH	NA	NA	NA	NA	NA
WP_000566670.1|34492_35749_+	DUF3578 domain-containing protein	NA	NA	NA	NA	NA
WP_001282728.1|36163_36403_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001106057.1|36434_37109_-|transposase	IS6-like element IS257 family transposase	transposase	A0A0N9RU54	Staphylococcus_phage	99.1	2.6e-127
WP_000119405.1|38427_39690_-	plasmid recombination protein	NA	NA	NA	NA	NA
WP_001242578.1|40196_40601_-	bleomycin binding protein	NA	NA	NA	NA	NA
WP_001795128.1|40817_41588_-	aminoglycoside O-nucleotidyltransferase ANT(4')-Ia	NA	NA	NA	NA	NA
WP_001106057.1|41780_42455_-|transposase	IS6-like element IS257 family transposase	transposase	A0A0N9RU54	Staphylococcus_phage	99.1	2.6e-127
WP_000958858.1|43596_44340_+	glycerophosphoryl diester phosphodiesterase	NA	NA	NA	NA	NA
WP_000872606.1|44436_44865_+	MaoC family dehydratase	NA	NA	NA	NA	NA
WP_001801873.1|44910_46920_-	PBP2a family beta-lactam-resistant peptidoglycan transpeptidase MecA	NA	NA	NA	NA	NA
WP_000952923.1|47016_48774_+	beta-lactam sensor/signal transducer MecR1	NA	NA	NA	NA	NA
WP_000369214.1|48773_49145_+	mecA-type methicillin resistance repressor MecI	NA	NA	NA	NA	NA
WP_014532405.1|49229_49298_-	phenol-soluble modulin PSM-mec	NA	NA	NA	NA	NA
WP_010922808.1|49631_50762_+	ROK family transcriptional regulator	NA	NA	NA	NA	NA
WP_000438836.1|52242_53307_-	DsrE/DsrF/DrsH-like family protein	NA	NA	NA	NA	NA
WP_000220507.1|53442_53703_+	persulfide-sensing transcriptional repressor CstR	NA	NA	NA	NA	NA
WP_000350222.1|53702_54347_+	sulfite exporter TauE/SafE family protein	NA	NA	NA	NA	NA
WP_001092058.1|54685_55348_-	methyltransferase domain-containing protein	NA	NA	NA	NA	NA
WP_001072201.1|55778_56510_+	23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(A)	NA	E4ZFQ0	Streptococcus_phage	47.5	1.9e-51
WP_000067268.1|56635_57418_-	aminoglycoside nucleotidyltransferase ANT(9)-Ia	NA	NA	NA	NA	NA
WP_000361059.1|57568_57946_-|transposase	transposase	transposase	NA	NA	NA	NA
WP_001557544.1|57952_59845_-|integrase	tyrosine-type recombinase/integrase	integrase	NA	NA	NA	NA
WP_000868132.1|59841_60927_-|integrase	tyrosine-type recombinase/integrase	integrase	A0A0A8WIF9	Clostridium_phage	28.3	4.5e-12
WP_000659050.1|61045_61363_-	RadC family protein	NA	NA	NA	NA	NA
WP_001092169.1|61383_61890_-	DUF1643 domain-containing protein	NA	NA	NA	NA	NA
WP_000700853.1|61907_62219_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000859155.1|62305_62656_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001186602.1|63173_64802_-	recombinase family protein	NA	A0A0S2SXR4	Bacillus_phage	31.4	2.4e-46
WP_000815646.1|64823_66173_-	recombinase family protein	NA	Q9T200	Bacillus_phage	25.1	1.4e-18
WP_000195100.1|66406_68200_-	DUF927 domain-containing protein	NA	NA	NA	NA	NA
WP_000273824.1|68199_68496_-	single-stranded DNA-binding protein	NA	NA	NA	NA	NA
WP_001060127.1|68688_69735_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000195429.1|72787_73960_-|transposase	IS256-like element IS256 family transposase	transposase	A0A0N9STL0	Staphylococcus_phage	100.0	3.5e-135
75694:75710	attR	TCCTCATTTTCAATAAT	NA	NA	NA	NA
>prophage 2
NZ_CP013953	Staphylococcus aureus strain NCCP14558 isolate sequencing chromosome, complete genome	2955147	425508	480626	2955147	integrase,transposase	Streptococcus_phage(64.0%)	55	421087:421102	470200:470215
421087:421102	attL	AATTGCTAAAACAAGT	NA	NA	NA	NA
WP_001557163.1|425508_426828_+|transposase	ISL3-like element IS1181 family transposase	transposase	NA	NA	NA	NA
WP_000956137.1|427159_428116_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000394698.1|428233_428896_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000763767.1|429038_429446_-	general stress protein	NA	NA	NA	NA	NA
WP_000421410.1|429958_430537_+	xanthine phosphoribosyltransferase	NA	NA	NA	NA	NA
WP_000793018.1|430536_431805_+	purine permease	NA	NA	NA	NA	NA
WP_000264071.1|431842_433309_+	IMP dehydrogenase	NA	A0A1V0SHK8	Klosneuvirus	40.5	5.2e-96
WP_000424963.1|433333_434875_+	glutamine-hydrolyzing GMP synthase	NA	A0A1V0SH76	Hokovirus	32.6	1.2e-23
WP_000237797.1|434942_436136_-|integrase	site-specific integrase	integrase	A0A0S2MV79	Bacillus_phage	34.2	8.3e-44
WP_000633907.1|436162_436363_-	DUF3173 domain-containing protein	NA	NA	NA	NA	NA
WP_000845143.1|436860_437091_-	helix-turn-helix domain-containing protein	NA	A0A1S5SEX1	Streptococcus_phage	78.9	1.0e-27
WP_000804879.1|437087_437510_-	sigma-70 family RNA polymerase sigma factor	NA	A0A1S5SEW0	Streptococcus_phage	68.6	7.5e-48
WP_001227350.1|438040_438394_+	helix-turn-helix domain-containing protein	NA	A0A1S5SFA6	Streptococcus_phage	89.7	2.2e-53
WP_032506803.1|438451_438640_-	cysteine-rich KTR domain-containing protein	NA	D0R0F6	Streptococcus_phage	61.4	7.4e-16
WP_000691737.1|438737_440657_-	tetracycline resistance ribosomal protection protein Tet(M)	NA	A0A1S5SF82	Streptococcus_phage	97.2	0.0e+00
WP_001791010.1|440672_440789_-	tetracycline resistance determinant leader peptide	NA	NA	NA	NA	NA
WP_000584387.1|441033_441963_-	conjugal transfer protein	NA	A0A1S5SF22	Streptococcus_phage	56.6	1.1e-83
WP_000768373.1|441979_443002_-	lysozyme family protein	NA	A0A1S5SEZ8	Streptococcus_phage	75.5	2.4e-132
WP_000192393.1|442998_445026_-	membrane protein	NA	A0A1S5SF30	Streptococcus_phage	65.3	5.1e-195
WP_000331165.1|445022_447476_-	ATP-binding protein	NA	A0A1S5SF64	Streptococcus_phage	78.9	0.0e+00
WP_000723887.1|447459_447855_-	conjugal transfer protein	NA	A0A1S5SEX7	Streptococcus_phage	72.6	5.9e-47
WP_000248477.1|447926_448565_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000870467.1|448620_449115_-	antirestriction protein ArdA	NA	A0A1S5SF25	Streptococcus_phage	63.4	2.8e-54
WP_000675717.1|449181_449961_-	abortive infection family protein	NA	NA	NA	NA	NA
WP_001009054.1|450002_450224_-	hypothetical protein	NA	A0A1S5SEY0	Streptococcus_phage	93.2	3.1e-29
WP_000055376.1|450220_450511_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000426689.1|450507_451692_-	replication initiation factor domain-containing protein	NA	A0A1S5SEX3	Streptococcus_phage	68.1	6.3e-161
WP_001130244.1|451873_453277_-	DUF87 domain-containing protein	NA	A0A1S5SFB5	Streptococcus_phage	66.5	2.2e-176
WP_000185761.1|453298_454072_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001234191.1|454081_454459_-	YdcP family protein	NA	A0A1S5SF96	Streptococcus_phage	76.4	9.6e-47
WP_000421279.1|454479_454794_-	YdcP family protein	NA	A0A1S5SF38	Streptococcus_phage	77.7	1.2e-42
WP_002303350.1|455094_456054_+|transposase	IS30 family transposase	transposase	NA	NA	NA	NA
WP_063663398.1|456017_457853_-	ATP-dependent helicase	NA	E3T5J8	Cafeteria_roenbergensis_virus	23.8	7.1e-26
WP_000470931.1|457849_460039_-	AAA family ATPase	NA	NA	NA	NA	NA
WP_000997694.1|460172_461363_-|transposase	IS256-like element ISLgar5 family transposase	transposase	NA	NA	NA	NA
WP_000551643.1|461856_462393_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000041880.1|462784_463489_-	type II toxin-antitoxin system PemK/MazF family toxin	NA	U5U4R0	Staphylococcus_phage	37.1	5.8e-29
WP_000159787.1|463887_464160_-|transposase	transposase	transposase	A0A0C5AJ30	Paenibacillus_phage	50.6	1.3e-13
WP_000248844.1|464420_464573_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001021623.1|465104_465464_-	DUF1304 domain-containing protein	NA	NA	NA	NA	NA
WP_001024371.1|465482_466328_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_000669014.1|466799_467480_+	superantigen-like protein SSL1	NA	NA	NA	NA	NA
WP_000782622.1|467765_468461_+	superantigen-like protein SSL2	NA	NA	NA	NA	NA
WP_001056483.1|468751_469822_+	superantigen-like protein SSL3	NA	NA	NA	NA	NA
WP_001792090.1|469939_470077_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000705657.1|470185_471064_+	superantigen-like protein SSL4	NA	NA	NA	NA	NA
470200:470215	attR	AATTGCTAAAACAAGT	NA	NA	NA	NA
WP_000781349.1|471427_472132_+	superantigen-like protein SSL5	NA	NA	NA	NA	NA
WP_000769820.1|472577_473273_+	superantigen-like protein SSL7	NA	NA	NA	NA	NA
WP_000673034.1|473611_474310_+	superantigen-like protein SSL8	NA	NA	NA	NA	NA
WP_000778500.1|474686_475385_+	superantigen-like protein SSL9	NA	NA	NA	NA	NA
WP_000673051.1|475750_476434_+	superantigen-like protein SSL10	NA	NA	NA	NA	NA
WP_031762269.1|476518_476620_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000028663.1|476697_478254_+	type I restriction-modification system subunit M	NA	A0A2H4PQP4	Staphylococcus_phage	99.2	1.2e-287
WP_063663401.1|478246_479368_+	restriction endonuclease subunit S	NA	A0A2H4PQP5	Staphylococcus_phage	44.7	2.9e-38
WP_000195429.1|479453_480626_+|transposase	IS256-like element IS256 family transposase	transposase	A0A0N9STL0	Staphylococcus_phage	100.0	3.5e-135
>prophage 3
NZ_CP013953	Staphylococcus aureus strain NCCP14558 isolate sequencing chromosome, complete genome	2955147	786059	793880	2955147		Hokovirus(16.67%)	10	NA	NA
WP_000244415.1|786059_787115_-	two-component system sensor histidine kinase SaeS	NA	A0A1V0SGX0	Hokovirus	29.8	3.6e-14
WP_000149344.1|787114_787801_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_001037807.1|787775_788249_-	DoxX family protein	NA	NA	NA	NA	NA
WP_001093562.1|788591_789032_-	DM13 domain-containing protein	NA	NA	NA	NA	NA
WP_000604990.1|789311_789896_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001062972.1|789994_790708_-	7-carboxy-7-deazaguanine synthase QueE	NA	A0A1U9WRB6	Streptococcus_virus	43.5	6.5e-52
WP_000941336.1|790711_791131_-	6-carboxytetrahydropterin synthase QueD	NA	S4U060	uncultured_phage	28.7	6.3e-07
WP_000446724.1|791132_791801_-	7-cyano-7-deazaguanine synthase QueC	NA	A0A2H4J8Q7	uncultured_Caudovirales_phage	57.5	9.6e-66
WP_000604514.1|792151_792745_+	aminodeoxychorismate/anthranilate synthase component II	NA	A0A0P0IKJ1	Acinetobacter_phage	42.9	4.4e-38
WP_001217796.1|792728_793880_+	anthranilate synthase component I family protein	NA	S4VNU7	Pandoravirus	35.7	6.0e-23
>prophage 4
NZ_CP013953	Staphylococcus aureus strain NCCP14558 isolate sequencing chromosome, complete genome	2955147	807371	822013	2955147		uncultured_Caudovirales_phage(50.0%)	14	NA	NA
WP_000663030.1|807371_808430_+	histidinol-phosphate transaminase	NA	A0A1X6WGT4	Pacmanvirus	26.7	7.9e-22
WP_000197262.1|808768_809311_+	5'-3'-deoxyribonucleotidase	NA	NA	NA	NA	NA
WP_000429006.1|810189_811107_-	diacylglycerol kinase family lipid kinase	NA	A0A1V0SBJ0	Catovirus	22.0	2.1e-07
WP_031760357.1|811197_811299_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000193751.1|811376_812882_-	peptide MFS transporter	NA	A0A0P0IY73	Acinetobacter_phage	32.2	2.0e-58
WP_000930014.1|813223_813724_-	NADPH-dependent 7-cyano-7-deazaguanine reductase QueF	NA	E7DN65	Pneumococcus_phage	71.5	5.9e-52
WP_001068501.1|813743_814610_-	DMT family transporter	NA	NA	NA	NA	NA
WP_000692521.1|815410_815809_+	class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI	NA	A0A2H4J545	uncultured_Caudovirales_phage	72.0	1.2e-52
WP_000855514.1|815771_817877_+	class 1b ribonucleoside-diphosphate reductase subunit alpha	NA	A0A2H4J2N6	uncultured_Caudovirales_phage	91.7	0.0e+00
WP_000562498.1|817994_818966_+	class 1b ribonucleoside-diphosphate reductase subunit beta	NA	A0A2H4J4P3	uncultured_Caudovirales_phage	91.3	4.2e-171
WP_000499195.1|819146_819302_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000876318.1|819340_820312_+	ABC transporter permease	NA	A0A2H4IY97	uncultured_Caudovirales_phage	78.9	4.3e-139
WP_001245577.1|820298_821255_+	iron chelate uptake ABC transporter family permease subunit	NA	A0A2H4J116	uncultured_Caudovirales_phage	57.8	1.2e-05
WP_000616840.1|821251_822013_+	ABC transporter ATP-binding protein	NA	Q9EMR9	Amsacta_moorei_entomopoxvirus	31.6	6.5e-18
>prophage 5
NZ_CP013953	Staphylococcus aureus strain NCCP14558 isolate sequencing chromosome, complete genome	2955147	872805	905561	2955147	coat,terminase,transposase,capsid,integrase	Staphylococcus_phage(68.18%)	37	872473:872488	878895:878910
872473:872488	attL	ATTGATAATGAAATGG	NA	NA	NA	NA
WP_001050048.1|872805_875178_+	ribonuclease R	NA	Q0GXV6	Lactococcus_phage	38.8	4.3e-92
WP_001085183.1|875199_875664_+	SsrA-binding protein SmpB	NA	W5RAM5	Staphylococcus_phage	98.7	1.6e-80
WP_000121223.1|876226_877333_-|integrase	site-specific integrase	integrase	H0UST3	Bacillus_phage	44.2	5.9e-76
WP_072474260.1|877338_877986_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_001060953.1|878143_878350_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000164237.1|878385_878613_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_000784893.1|878609_878756_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001058487.1|878748_878958_+	hypothetical protein	NA	Q4ZE76	Staphylococcus_phage	92.8	2.2e-29
878895:878910	attR	ATTGATAATGAAATGG	NA	NA	NA	NA
WP_001103933.1|878960_879278_+	DUF1474 family protein	NA	Q4ZE75	Staphylococcus_phage	48.1	1.2e-18
WP_001002695.1|879344_880214_+	primase C-terminal domain-containing protein	NA	A0A1W6JQL5	Staphylococcus_phage	96.9	3.2e-162
WP_001668899.1|880230_881700_+	hypothetical protein	NA	A0A1W6JQD6	Staphylococcus_phage	99.6	3.4e-289
WP_001039169.1|881985_882348_+	hypothetical protein	NA	A0A1W6JQD5	Staphylococcus_phage	98.3	5.8e-65
WP_000998179.1|882349_882634_+	hypothetical protein	NA	A0A1W6JQE4	Staphylococcus_phage	100.0	1.2e-49
WP_063663413.1|882630_883272_+	pathogenicity island protein	NA	Q4ZE67	Staphylococcus_phage	87.3	6.5e-104
WP_001190615.1|883721_884063_+	hypothetical protein	NA	Q4ZE66	Staphylococcus_phage	99.1	1.4e-57
WP_000846280.1|884074_884653_+	hypothetical protein	NA	A0A2H4JBG0	uncultured_Caudovirales_phage	38.9	4.8e-29
WP_000448770.1|884670_884889_+|capsid	capsid morphogenesis B protein	capsid	NA	NA	NA	NA
WP_000771368.1|884939_885467_+|coat	spore coat protein	coat	A0A1W6JQH7	Staphylococcus_phage	97.1	3.5e-87
WP_000358774.1|885469_885811_+	hypothetical protein	NA	A0A1W6JQM3	Staphylococcus_phage	99.1	1.4e-57
WP_001293076.1|885807_886377_+|terminase	terminase small subunit	terminase	Q4ZE85	Staphylococcus_phage	98.9	9.3e-102
WP_000801979.1|886653_887622_+	Abi family protein	NA	A0A0H4U080	Erysipelothrix_phage	27.3	5.9e-24
WP_106901598.1|887763_887862_+	hypothetical protein	NA	A0A2H4JAH5	uncultured_Caudovirales_phage	90.6	5.4e-10
WP_047211745.1|887891_888041_+	hypothetical protein	NA	A0A2H4JAH5	uncultured_Caudovirales_phage	52.1	3.5e-08
WP_000825515.1|888585_889500_+	iron-hydroxamate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_000824908.1|889557_890406_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_001058299.1|891470_891794_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000757397.1|892147_892876_-	DUF5067 domain-containing protein	NA	H9A0X8	Staphylococcus_phage	37.5	1.3e-18
WP_000195429.1|892999_894172_-|transposase	IS256-like element IS256 family transposase	transposase	A0A0N9STL0	Staphylococcus_phage	100.0	3.5e-135
WP_001790158.1|894647_894803_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000608192.1|894810_895332_+	hypothetical protein	NA	NA	NA	NA	NA
WP_063663416.1|895470_896001_+	N-acetyltransferase	NA	NA	NA	NA	NA
WP_001056195.1|896263_899233_+	MSCRAMM family adhesin clumping factor ClfA	NA	NA	NA	NA	NA
WP_000791700.1|899453_900956_+	von Willebrand factor binding protein Vwb	NA	NA	NA	NA	NA
WP_000728068.1|901308_902331_+	extracellular matrix protein-binding adhesin Emp	NA	NA	NA	NA	NA
WP_000824482.1|902665_903187_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000141557.1|903527_904214_+	thermonuclease family protein	NA	A0A1P8CWK6	Bacillus_phage	54.2	1.7e-33
WP_000195429.1|904388_905561_-|transposase	IS256-like element IS256 family transposase	transposase	A0A0N9STL0	Staphylococcus_phage	100.0	3.5e-135
>prophage 6
NZ_CP013953	Staphylococcus aureus strain NCCP14558 isolate sequencing chromosome, complete genome	2955147	994134	1052358	2955147	protease,bacteriocin,tRNA,transposase	Planktothrix_phage(30.0%)	54	NA	NA
WP_000195429.1|994134_995307_+|transposase	IS256-like element IS256 family transposase	transposase	A0A0N9STL0	Staphylococcus_phage	100.0	3.5e-135
WP_001037440.1|995786_996908_+	membrane protein	NA	NA	NA	NA	NA
WP_000700882.1|996885_997401_+	YbhB/YbcL family Raf kinase inhibitor-like protein	NA	NA	NA	NA	NA
WP_000769694.1|997711_998146_+	MAP domain-containing protein	NA	NA	NA	NA	NA
WP_000682089.1|998402_998588_-	YjzD family protein	NA	NA	NA	NA	NA
WP_001100526.1|998882_999824_+	ketoacyl-ACP synthase III	NA	NA	NA	NA	NA
WP_000081231.1|999835_1001080_+	beta-ketoacyl-ACP synthase II	NA	NA	NA	NA	NA
WP_000915157.1|1001134_1001506_-	DUF3899 domain-containing protein	NA	NA	NA	NA	NA
WP_000521533.1|1001748_1002675_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_042108581.1|1002674_1003745_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_000140050.1|1003760_1004843_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	28.8	8.4e-19
WP_000786734.1|1004832_1005774_+	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	32.9	8.3e-23
WP_000197018.1|1005792_1007448_+	peptide ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_000517183.1|1007659_1009375_+	oligopeptide ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_001067052.1|1009425_1010412_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	29.6	1.4e-15
WP_000427767.1|1010414_1011395_+	dipeptide ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	31.6	4.6e-16
WP_000915997.1|1011387_1012350_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_001180280.1|1012361_1013243_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_000448934.1|1013284_1014274_-|tRNA	tryptophan--tRNA ligase	tRNA	NA	NA	NA	NA
WP_000258003.1|1014567_1014963_+	transcriptional regulator Spx	NA	NA	NA	NA	NA
WP_001217728.1|1015333_1016053_+	adaptor protein MecA	NA	NA	NA	NA	NA
WP_000959282.1|1016173_1017160_+	competence protein CoiA	NA	NA	NA	NA	NA
WP_000082725.1|1017207_1019016_+	oligoendopeptidase F	NA	A0A1X9I5X5	Streptococcus_phage	24.5	5.5e-47
WP_000896697.1|1019475_1020282_-|protease	protease adaptor protein YjbH	protease	NA	NA	NA	NA
WP_000214070.1|1020304_1020670_-	truncated hemoglobin	NA	NA	NA	NA	NA
WP_000224619.1|1020773_1021367_-	CYTH domain-containing protein	NA	NA	NA	NA	NA
WP_001242103.1|1021552_1021900_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001077683.1|1021916_1022552_+	GTP pyrophosphokinase family protein	NA	NA	NA	NA	NA
WP_001270834.1|1022568_1023378_+	NAD kinase	NA	NA	NA	NA	NA
WP_042108604.1|1023374_1024229_+	RluA family pseudouridine synthase	NA	NA	NA	NA	NA
WP_000062407.1|1024249_1025635_+	magnesium transporter	NA	NA	NA	NA	NA
WP_000395153.1|1025644_1027489_+	monovalent cation:proton antiporter family protein	NA	NA	NA	NA	NA
WP_000933195.1|1027766_1028537_+	enoyl-ACP reductase FabI	NA	NA	NA	NA	NA
WP_000933105.1|1028733_1029819_-	AI-2E family transporter	NA	NA	NA	NA	NA
WP_000570687.1|1030160_1031729_+	alanine:cation symporter family protein	NA	NA	NA	NA	NA
WP_001288675.1|1031873_1032632_+	esterase family protein	NA	NA	NA	NA	NA
WP_000600387.1|1032825_1033335_+	YjcG family protein	NA	NA	NA	NA	NA
WP_001154223.1|1033447_1034638_-	MFS transporter	NA	NA	NA	NA	NA
WP_000258645.1|1034615_1035791_-	diglucosyl diacylglycerol synthase	NA	NA	NA	NA	NA
WP_000340119.1|1036223_1037708_+	UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L- lysine ligase	NA	NA	NA	NA	NA
WP_001795833.1|1037688_1037949_+	YueH family protein	NA	NA	NA	NA	NA
WP_001049950.1|1037948_1039511_+	peptide chain release factor 3	NA	A0A1S5SF82	Streptococcus_phage	28.2	1.7e-36
WP_000928413.1|1039812_1040616_+	TerC family protein	NA	S5MAL1	Bacillus_phage	40.5	1.6e-30
WP_001795272.1|1040834_1043159_+|protease	serine protease	protease	W5SAB9	Pithovirus	27.4	2.8e-11
WP_000021865.1|1043175_1044534_+	TrkH family potassium uptake protein	NA	NA	NA	NA	NA
WP_000414165.1|1044672_1046184_+	bifunctional metallophosphatase/5'-nucleotidase	NA	NA	NA	NA	NA
WP_000287265.1|1046670_1047240_-	competence protein ComK	NA	NA	NA	NA	NA
WP_000876826.1|1047449_1047668_+	IDEAL domain-containing protein	NA	NA	NA	NA	NA
WP_000668818.1|1047748_1048735_-	lipoate--protein ligase	NA	NA	NA	NA	NA
WP_000214898.1|1048933_1049110_+	YkvS family protein	NA	NA	NA	NA	NA
WP_001033865.1|1049124_1049727_+|protease	CPBP family intramembrane metalloprotease	protease	NA	NA	NA	NA
WP_001792055.1|1050642_1050744_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000195429.1|1050802_1051975_-|transposase	IS256-like element IS256 family transposase	transposase	A0A0N9STL0	Staphylococcus_phage	100.0	3.5e-135
WP_063663434.1|1052037_1052358_+|bacteriocin	lactococcin 972 family bacteriocin	bacteriocin	NA	NA	NA	NA
>prophage 7
NZ_CP013953	Staphylococcus aureus strain NCCP14558 isolate sequencing chromosome, complete genome	2955147	1086668	1095141	2955147		Synechococcus_phage(33.33%)	9	NA	NA
WP_000861572.1|1086668_1087151_+	5-(carboxyamino)imidazole ribonucleotide mutase	NA	A0A2P0VNU7	Tetraselmis_virus	44.7	6.2e-22
WP_001010413.1|1087137_1088262_+	5-(carboxyamino)imidazole ribonucleotide synthase	NA	NA	NA	NA	NA
WP_000174053.1|1088265_1088970_+	phosphoribosylaminoimidazolesuccinocarboxamide synthase	NA	M4R1E8	Synechococcus_phage	42.1	7.3e-48
WP_000848350.1|1088969_1089233_+	phosphoribosylformylglycinamidine synthase subunit PurS	NA	NA	NA	NA	NA
WP_000666806.1|1089234_1089906_+	phosphoribosylformylglycinamidine synthase I	NA	NA	NA	NA	NA
WP_000032740.1|1089898_1092088_+	phosphoribosylformylglycinamidine synthase subunit PurL	NA	A6N228	Microbacterium_phage	39.8	3.5e-141
WP_000483720.1|1092066_1093551_+	amidophosphoribosyltransferase	NA	A0A0M3SGR2	Mollivirus	31.7	1.9e-45
WP_000030811.1|1093543_1094572_+	phosphoribosylformylglycinamidine cyclo-ligase	NA	Q58MH8	Prochlorococcus_phage	41.7	3.4e-62
WP_000238669.1|1094574_1095141_+	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	40.1	6.1e-29
>prophage 8
NZ_CP013953	Staphylococcus aureus strain NCCP14558 isolate sequencing chromosome, complete genome	2955147	1146874	1229631	2955147	tRNA,terminase,tail,portal,holin,transposase,plate,capsid,head	Staphylococcus_phage(94.03%)	99	NA	NA
WP_000401377.1|1146874_1147357_+	pantetheine-phosphate adenylyltransferase	NA	A0A1B1IVQ3	uncultured_Mediterranean_phage	46.2	2.6e-28
WP_000843611.1|1147418_1148558_-	nucleotidyltransferase	NA	NA	NA	NA	NA
WP_000872158.1|1148684_1149242_+	DUF177 domain-containing protein	NA	NA	NA	NA	NA
WP_000290472.1|1149321_1149495_+	50S ribosomal protein L32	NA	NA	NA	NA	NA
WP_000861313.1|1149611_1150997_-	recombinase family protein	NA	I1W625	Staphylococcus_phage	100.0	2.5e-265
WP_000392109.1|1151203_1151884_-	type II toxin-antitoxin system PemK/MazF family toxin	NA	A0A2H4PQQ5	Staphylococcus_phage	100.0	5.1e-123
WP_000358220.1|1151919_1152639_-	helix-turn-helix transcriptional regulator	NA	Q8SDX2	Staphylococcus_phage	100.0	9.8e-133
WP_001198673.1|1152780_1152999_+	helix-turn-helix transcriptional regulator	NA	Q8SDX1	Staphylococcus_phage	100.0	2.9e-35
WP_001153965.1|1153013_1153322_+	hypothetical protein	NA	S4V9P0	Staphylococcus_phage	100.0	1.3e-49
WP_001148569.1|1153478_1154270_+	phage antirepressor KilAC domain-containing protein	NA	Q8SDX0	Staphylococcus_phage	100.0	1.5e-145
WP_000187184.1|1154270_1154495_+	hypothetical protein	NA	A0A0F6N4M2	Staphylococcus_phage	100.0	3.2e-34
WP_000939498.1|1154534_1154678_+	hypothetical protein	NA	W5R8I6	Staphylococcus_phage	100.0	2.5e-16
WP_001838167.1|1154699_1155347_-	hypothetical protein	NA	S4V9K2	Staphylococcus_phage	100.0	2.0e-113
WP_001285957.1|1155526_1155694_+	DUF1270 domain-containing protein	NA	S4V7J2	Staphylococcus_phage	100.0	9.5e-23
WP_000219666.1|1155694_1156015_+	hypothetical protein	NA	S4V968	Staphylococcus_phage	100.0	4.8e-55
WP_000291075.1|1156108_1156369_+	DUF1108 family protein	NA	A0A059T5A3	Staphylococcus_phage	100.0	1.2e-43
WP_001205732.1|1156377_1156641_+	hypothetical protein	NA	A0A2I6PDG2	Staphylococcus_phage	100.0	7.7e-43
WP_000700555.1|1156649_1158593_+	AAA family ATPase	NA	S4V9K6	Staphylococcus_phage	100.0	0.0e+00
WP_000138475.1|1158594_1159515_+	recombinase RecT	NA	A0A2I6PDH5	Staphylococcus_phage	100.0	2.3e-166
WP_071890040.1|1159595_1160213_+	MBL fold metallo-hydrolase	NA	S4V971	Staphylococcus_phage	100.0	9.1e-87
WP_000934768.1|1160213_1160684_+	single-stranded DNA-binding protein	NA	S4V682	Staphylococcus_phage	100.0	2.6e-81
WP_000148306.1|1160713_1161601_+	DnaD domain protein	NA	S4V6D4	Staphylococcus_phage	100.0	8.4e-142
WP_000338528.1|1161607_1161826_+	hypothetical protein	NA	A0A1P8L6E4	Staphylococcus_phage	100.0	1.4e-37
WP_000401973.1|1161834_1162239_+	RusA family crossover junction endodeoxyribonuclease	NA	S4V7J7	Staphylococcus_phage	100.0	3.8e-73
WP_031875644.1|1162251_1162629_+	phage protein	NA	S4V974	Staphylococcus_phage	100.0	1.6e-54
WP_015980409.1|1162629_1162878_+	hypothetical protein	NA	S4V683	Staphylococcus_phage	100.0	3.2e-43
WP_015978402.1|1162890_1163292_+	hypothetical protein	NA	S4V6D5	Staphylococcus_phage	100.0	6.6e-70
WP_001105618.1|1163288_1163573_+	hypothetical protein	NA	S4V9L1	Staphylococcus_phage	100.0	3.2e-47
WP_001065026.1|1163565_1163814_+	DUF1024 family protein	NA	S4V7K0	Staphylococcus_phage	100.0	4.1e-38
WP_031789556.1|1163806_1164343_+	dUTP diphosphatase	NA	S4V978	Staphylococcus_phage	100.0	9.4e-96
WP_000195810.1|1164379_1164586_+	DUF1381 domain-containing protein	NA	S4V684	Staphylococcus_phage	100.0	7.6e-30
WP_000595257.1|1164582_1164756_+	transcriptional activator RinB	NA	Q4ZBK0	Staphylococcus_phage	100.0	6.4e-22
WP_000990001.1|1164756_1164903_+	hypothetical protein	NA	S4V9L4	Staphylococcus_phage	100.0	1.7e-15
WP_000162696.1|1164926_1165349_+	RinA family phage transcriptional activator	NA	S4V7K2	Staphylococcus_phage	100.0	1.6e-74
WP_001003272.1|1165535_1165976_+|terminase	terminase small subunit	terminase	Q8SDV0	Staphylococcus_phage	100.0	2.8e-74
WP_000169945.1|1165962_1167240_+|terminase	PBSX family phage terminase large subunit	terminase	S4V685	Staphylococcus_phage	100.0	1.3e-249
WP_001568999.1|1167250_1168789_+|portal	phage portal protein	portal	S4V6D8	Staphylococcus_phage	100.0	5.3e-293
WP_031794387.1|1168795_1169791_+|capsid	minor capsid protein	capsid	S4V9L8	Staphylococcus_phage	100.0	1.2e-184
WP_000072208.1|1169863_1170034_+	hypothetical protein	NA	A0A0F6N3E9	Staphylococcus_phage	100.0	1.5e-23
WP_063663447.1|1170142_1170763_+	DUF4355 domain-containing protein	NA	S4V984	Staphylococcus_phage	100.0	3.5e-70
WP_000438512.1|1170776_1171751_+|capsid	phage major capsid protein	capsid	S4SVE6	Staphylococcus_phage	100.0	2.2e-183
WP_031771475.1|1171772_1172060_+	hypothetical protein	NA	S4SVF0	Staphylococcus_phage	100.0	3.6e-46
WP_000208960.1|1172068_1172401_+|head,tail	phage head-tail connector protein	head,tail	A0A0F6N3F4	Staphylococcus_phage	100.0	5.5e-54
WP_009560319.1|1172397_1172700_+	hypothetical protein	NA	S4SUQ1	Staphylococcus_phage	100.0	8.8e-51
WP_001017811.1|1172699_1173047_+	HK97 gp10 family phage protein	NA	I1W643	Staphylococcus_phage	100.0	5.3e-60
WP_000188653.1|1173058_1173442_+	hypothetical protein	NA	Q8SDU1	Staphylococcus_phage	100.0	2.6e-68
WP_000002583.1|1173460_1174042_+|tail	phage major tail protein, TP901-1 family	tail	Q8SDU0	Staphylococcus_phage	100.0	4.9e-106
WP_001100163.1|1174103_1174469_+|tail	tail assembly chaperone	tail	Q8SDT9	Staphylococcus_phage	100.0	2.8e-59
WP_000105584.1|1174498_1174843_+	hypothetical protein	NA	A0A0F6N3F7	Staphylococcus_phage	100.0	2.5e-57
WP_031881830.1|1174859_1178324_+	membrane protein	NA	S4SWD3	Staphylococcus_phage	100.0	2.5e-258
WP_031881831.1|1178336_1179284_+|tail	phage tail family protein	tail	S4SVF4	Staphylococcus_phage	100.0	6.1e-183
WP_031783966.1|1179292_1181194_+|tail	phage tail protein	tail	S4SVF9	Staphylococcus_phage	100.0	0.0e+00
WP_031898410.1|1181208_1183119_+	hypothetical protein	NA	S4V9M9	Staphylococcus_phage	100.0	0.0e+00
WP_000259596.1|1183118_1184942_+|plate	phage baseplate upper protein	plate	S4V7L3	Staphylococcus_phage	100.0	0.0e+00
WP_000705902.1|1184941_1185319_+	DUF2977 domain-containing protein	NA	S4V993	Staphylococcus_phage	100.0	6.9e-61
WP_001800921.1|1185322_1185496_+	XkdX family protein	NA	A0A059T7K6	Staphylococcus_phage	100.0	1.3e-27
WP_000466767.1|1185536_1185836_+	DUF2951 domain-containing protein	NA	S4V6E4	Staphylococcus_phage	100.0	1.3e-46
WP_063663450.1|1185972_1187871_+	glucosaminidase domain-containing protein	NA	S4V9N2	Staphylococcus_phage	99.7	0.0e+00
WP_063663453.1|1187883_1189056_+|plate	BppU family phage baseplate upper protein	plate	I1W629	Staphylococcus_phage	98.2	8.6e-195
WP_000398882.1|1189061_1189457_+	hypothetical protein	NA	S4V997	Staphylococcus_phage	100.0	1.6e-68
WP_000354135.1|1189514_1189952_+|holin	phage holin	holin	S4V690	Staphylococcus_phage	100.0	1.2e-72
WP_001148142.1|1189932_1191378_+	SH3 domain-containing protein	NA	S4V6E6	Staphylococcus_phage	100.0	1.8e-295
WP_001788502.1|1191620_1191773_+	hypothetical protein	NA	A0A0F6N3H2	Staphylococcus_phage	100.0	3.1e-20
WP_000139423.1|1191843_1191954_+	hypothetical protein	NA	W5R8J7	Staphylococcus_phage	100.0	1.7e-12
WP_001286805.1|1191955_1192141_+	hypothetical protein	NA	A0A0F6N3H3	Staphylococcus_phage	100.0	2.7e-26
WP_063663456.1|1192551_1194489_-	heme uptake protein IsdB	NA	NA	NA	NA	NA
WP_000160859.1|1194691_1195744_-	LPXTG-anchored heme-scavenging protein IsdA	NA	NA	NA	NA	NA
WP_000789821.1|1195952_1196636_+	heme uptake protein IsdC	NA	NA	NA	NA	NA
WP_001246685.1|1196635_1197712_+	iron-regulated surface determinant protein IsdD	NA	NA	NA	NA	NA
WP_001220199.1|1197708_1198587_+	heme ABC transporter substrate-binding protein IsdE	NA	NA	NA	NA	NA
WP_000594530.1|1198599_1199565_+	hemin ABC transporter permease protein IsdF	NA	NA	NA	NA	NA
WP_001242427.1|1199626_1200361_+	class B sortase	NA	NA	NA	NA	NA
WP_000670950.1|1200379_1200703_+	staphylobilin-forming heme oxygenase IsdG	NA	NA	NA	NA	NA
WP_001788617.1|1200739_1200847_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000435374.1|1201086_1201827_+	RNA methyltransferase	NA	NA	NA	NA	NA
WP_000003566.1|1202206_1203265_+|tRNA	phenylalanine--tRNA ligase subunit alpha	tRNA	A0A2I2L4E3	Orpheovirus	35.5	1.9e-31
WP_000046704.1|1207408_1207675_+	cell division protein ZapA	NA	NA	NA	NA	NA
WP_000234068.1|1207675_1208197_+	CvpA family protein	NA	NA	NA	NA	NA
WP_000161938.1|1208269_1209982_+	DNA polymerase/3'-5' exonuclease PolX	NA	A0A2H4UV14	Bodo_saltans_virus	24.0	6.8e-15
WP_001249275.1|1209991_1212340_+	endonuclease MutS2	NA	F2QAF8	Phaeocystis_pouchetii_virus	25.4	3.2e-15
WP_001018928.1|1212512_1212827_+	thioredoxin	NA	A0A1X9I9P5	Staphylococcus_phage	46.6	6.6e-25
WP_001788625.1|1212889_1212985_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000390524.1|1213150_1214932_+	excinuclease ABC subunit UvrC	NA	NA	NA	NA	NA
WP_000079317.1|1215255_1215870_+	succinate dehydrogenase cytochrome b558 subunit	NA	NA	NA	NA	NA
WP_000818278.1|1215921_1217688_+	succinate dehydrogenase flavoprotein subunit	NA	NA	NA	NA	NA
WP_000139712.1|1217687_1218503_+	succinate dehydrogenase iron-sulfur subunit	NA	NA	NA	NA	NA
WP_001039659.1|1218738_1219539_+	glutamate racemase	NA	NA	NA	NA	NA
WP_000659319.1|1219550_1220138_+	XTP/dITP diphosphatase	NA	NA	NA	NA	NA
WP_000049484.1|1220130_1220634_+	metallophosphoesterase	NA	NA	NA	NA	NA
WP_001791787.1|1220761_1220929_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000739210.1|1221122_1221452_+	complement convertase inhibitor Ecb	NA	NA	NA	NA	NA
WP_000739564.1|1221820_1222222_-	formyl peptide receptor-like 1 inhibitory protein	NA	NA	NA	NA	NA
WP_000195429.1|1222636_1223809_-|transposase	IS256-like element IS256 family transposase	transposase	A0A0N9STL0	Staphylococcus_phage	100.0	3.5e-135
WP_000584398.1|1224223_1224730_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000791581.1|1224989_1225487_+	complement convertase inhibitor Efb	NA	NA	NA	NA	NA
WP_000669537.1|1225636_1225987_+	complement inhibitor SCIN-B	NA	NA	NA	NA	NA
WP_001032817.1|1226752_1226938_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000231632.1|1227559_1227793_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001557163.1|1228311_1229631_+|transposase	ISL3-like element IS1181 family transposase	transposase	NA	NA	NA	NA
>prophage 9
NZ_CP013953	Staphylococcus aureus strain NCCP14558 isolate sequencing chromosome, complete genome	2955147	1582090	1669214	2955147	protease,tRNA,portal,tail,terminase,holin,plate,capsid,integrase,head	Staphylococcus_phage(83.33%)	105	1618368:1618396	1663608:1663636
WP_000858779.1|1582090_1583383_-|tRNA	asparagine--tRNA ligase	tRNA	M1PB22	Moumouvirus	31.3	8.7e-55
WP_000525078.1|1583704_1586398_-	ATP-dependent helicase DinG	NA	A0A1X9I5C8	Streptococcus_phage	34.4	8.2e-47
WP_000049921.1|1586421_1587393_-	biotin--[acetyl-CoA-carboxylase] ligase	NA	NA	NA	NA	NA
WP_000361540.1|1587379_1588582_-|tRNA	CCA tRNA nucleotidyltransferase	tRNA	H7BUW3	unidentified_phage	43.3	4.2e-35
WP_000690025.1|1588586_1589729_-	N-acetyl-alpha-D-glucosaminyl L-malate synthase BshA	NA	NA	NA	NA	NA
WP_000839926.1|1589972_1590290_-	nucleotide pyrophosphohydrolase	NA	NA	NA	NA	NA
WP_001827022.1|1590625_1591306_-	zinc metallopeptidase	NA	NA	NA	NA	NA
WP_000154683.1|1591377_1591965_-	DUF1405 domain-containing protein	NA	NA	NA	NA	NA
WP_000005212.1|1591954_1592530_-	YpiB family protein	NA	G3MAV7	Bacillus_virus	27.2	2.1e-08
WP_000389524.1|1592543_1593788_-	hypothetical protein	NA	NA	NA	NA	NA
WP_063663490.1|1593794_1595093_-	3-phosphoshikimate 1-carboxyvinyltransferase	NA	NA	NA	NA	NA
WP_000776312.1|1595102_1596167_-	3-dehydroquinate synthase	NA	NA	NA	NA	NA
WP_001269921.1|1596192_1597359_-	chorismate synthase	NA	A0A291AU41	Pandoravirus	31.8	5.8e-34
WP_000789522.1|1597744_1597945_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000442480.1|1598153_1598603_-	nucleoside-diphosphate kinase	NA	D2E8E1	Anguillid_herpesvirus	43.8	2.4e-28
WP_001096471.1|1598694_1599654_-	polyprenyl synthetase family protein	NA	A0A1V0SE37	Indivirus	24.4	1.3e-10
WP_000774684.1|1599655_1600381_-	demethylmenaquinone methyltransferase	NA	NA	NA	NA	NA
WP_000450555.1|1600383_1600956_-	heptaprenyl diphosphate synthase component 1	NA	NA	NA	NA	NA
WP_001043863.1|1601386_1601659_-	HU family DNA-binding protein	NA	A7KV42	Bacillus_phage	73.3	4.2e-28
WP_000161745.1|1601829_1602828_-	NAD(P)H-dependent glycerol-3-phosphate dehydrogenase	NA	NA	NA	NA	NA
WP_000165530.1|1602844_1604155_-	ribosome biogenesis GTPase Der	NA	NA	NA	NA	NA
WP_000133961.1|1604376_1605552_-	30S ribosomal protein S1	NA	NA	NA	NA	NA
WP_001800578.1|1605808_1606000_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001795818.1|1606080_1606233_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000644391.1|1606263_1606923_-	(d)CMP kinase	NA	NA	NA	NA	NA
WP_000681757.1|1606999_1607968_+	asparaginase	NA	NA	NA	NA	NA
WP_001174258.1|1608082_1609069_-	YpdA family putative bacillithiol disulfide reductase	NA	NA	NA	NA	NA
WP_001792205.1|1609229_1609346_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000069289.1|1609471_1610932_-	elastin-binding protein EbpS	NA	NA	NA	NA	NA
WP_042109065.1|1611084_1612464_-	ATP-dependent DNA helicase RecQ	NA	A0A2P1EM61	Moumouvirus	33.3	5.4e-55
WP_001163801.1|1612453_1613407_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_001151997.1|1613514_1613763_+	ferredoxin	NA	A0A127AYY7	Bacillus_phage	48.0	8.3e-15
WP_001186912.1|1613868_1614414_-	ECF transporter S component	NA	NA	NA	NA	NA
WP_000913243.1|1614815_1615772_-	DUF1672 domain-containing protein	NA	NA	NA	NA	NA
WP_000476346.1|1616242_1617139_-	DUF1672 domain-containing protein	NA	NA	NA	NA	NA
WP_063663493.1|1617196_1618102_-	DUF1672 domain-containing protein	NA	NA	NA	NA	NA
WP_000126130.1|1618191_1618407_-	hypothetical protein	NA	A0ZS61	Staphylococcus_virus	100.0	2.0e-25
1618368:1618396	attL	AAATAAACATATCATCATAATGTGATGGT	NA	NA	NA	NA
WP_000909213.1|1619128_1620583_-	N-acetylmuramoyl-L-alanine amidase	NA	U5U7D2	Staphylococcus_phage	100.0	2.6e-289
WP_000339146.1|1620593_1620896_-|holin	phage holin	holin	A0A2I6PET6	Staphylococcus_phage	100.0	7.0e-48
WP_000466784.1|1621031_1621331_-	DUF2951 domain-containing protein	NA	A0A2I6PER2	Staphylococcus_phage	100.0	2.0e-31
WP_000916020.1|1621376_1621541_-	XkdX family protein	NA	A0A2I6PES4	Staphylococcus_phage	100.0	4.9e-24
WP_001166599.1|1621533_1621923_-	DUF2977 domain-containing protein	NA	A0A2I6PER1	Staphylococcus_phage	100.0	2.2e-62
WP_031775920.1|1621922_1623389_-|plate	phage baseplate upper protein	plate	M1TB09	Staphylococcus_phage	99.8	1.0e-253
WP_044425964.1|1623388_1625299_-	hypothetical protein	NA	U5U4Q1	Staphylococcus_phage	100.0	0.0e+00
WP_000179858.1|1625314_1625605_-	hypothetical protein	NA	U5U457	Staphylococcus_phage	100.0	2.1e-49
WP_000384474.1|1625604_1627188_-|tail	phage tail protein	tail	A0A2I6PEQ5	Staphylococcus_phage	100.0	9.3e-309
WP_001190533.1|1627196_1628021_-|tail	phage tail family protein	tail	A0A2I6PER3	Staphylococcus_phage	100.0	4.1e-159
WP_031860857.1|1628020_1634221_-|tail	phage tail tape measure protein	tail	U5U762	Staphylococcus_phage	99.8	0.0e+00
WP_000438833.1|1634234_1634393_-	hypothetical protein	NA	A0A2I6PES8	Staphylococcus_phage	100.0	1.2e-19
WP_000589166.1|1634443_1634785_-	hypothetical protein	NA	A0A2I6PEQ2	Staphylococcus_phage	100.0	1.5e-54
WP_000169128.1|1634842_1635298_-	Ig domain-containing protein	NA	A0A2I6PF45	Staphylococcus_phage	100.0	1.3e-77
WP_000807536.1|1635389_1636031_-|tail	tail protein	tail	A0A2I6PEP6	Staphylococcus_phage	100.0	5.9e-121
WP_001023806.1|1636065_1636461_-	DUF3168 domain-containing protein	NA	A0A2I6PEQ4	Staphylococcus_phage	100.0	8.8e-67
WP_000110023.1|1636461_1636863_-	hypothetical protein	NA	A0A2I6PF54	Staphylococcus_phage	100.0	8.1e-68
WP_000395498.1|1636859_1637192_-	hypothetical protein	NA	A0A2I6PES3	Staphylococcus_phage	100.0	4.1e-57
WP_000050973.1|1637203_1637482_-|head,tail	phage gp6-like head-tail connector protein	head,tail	A0A2I6PEQ1	Staphylococcus_phage	100.0	2.1e-46
WP_001142734.1|1637550_1638714_-|capsid	phage major capsid protein	capsid	A0A2I6PEQ3	Staphylococcus_phage	100.0	1.2e-217
WP_000061866.1|1638725_1639499_-|protease	Clp protease ClpP	protease	A0A2I6PEQ7	Staphylococcus_phage	100.0	2.4e-137
WP_001100669.1|1639482_1640721_-|portal	phage portal protein	portal	A0A2K9VBP0	Staphylococcus_phage	100.0	6.9e-235
WP_000152858.1|1640725_1642417_-|terminase	terminase large subunit	terminase	A0A2K9VBQ1	Staphylococcus_phage	100.0	0.0e+00
WP_000778935.1|1642406_1642712_-|terminase	P27 family phage terminase small subunit	terminase	U5U414	Staphylococcus_phage	100.0	2.9e-49
WP_000596031.1|1642836_1643157_-	HNH endonuclease	NA	A0A2K9VBV6	Staphylococcus_phage	100.0	3.0e-57
WP_000513704.1|1643313_1643751_-	transcriptional regulator	NA	A0A2K9VBV2	Staphylococcus_phage	100.0	6.1e-77
WP_001793488.1|1643763_1645131_-	DEAD/DEAH box helicase	NA	A0A2I6PE95	Staphylococcus_phage	100.0	1.7e-263
WP_000665205.1|1645111_1645402_-	VRR-NUC domain-containing protein	NA	U5U7A3	Staphylococcus_phage	100.0	4.9e-51
WP_001801650.1|1645535_1645634_+	hypothetical protein	NA	A0A2I6PDP6	Staphylococcus_phage	100.0	3.7e-11
WP_000884870.1|1645742_1648190_-	virulence-associated E family protein	NA	A0A2I6PEP4	Staphylococcus_phage	100.0	0.0e+00
WP_000265252.1|1648477_1648678_-	DUF1514 family protein	NA	A0A2I6PEP5	Staphylococcus_phage	100.0	4.9e-26
WP_000595263.1|1648745_1648898_-	transcriptional activator RinB	NA	A0A2I6PEM5	Staphylococcus_phage	100.0	2.0e-19
WP_000195810.1|1648894_1649101_-	DUF1381 domain-containing protein	NA	S4V684	Staphylococcus_phage	100.0	7.6e-30
WP_063653166.1|1649137_1649671_-	dUTP diphosphatase	NA	U5U798	Staphylococcus_phage	98.3	1.5e-93
WP_000889684.1|1649685_1649847_-	hypothetical protein	NA	M9NTB4	Staphylococcus_phage	100.0	4.9e-24
WP_000028424.1|1649847_1650021_-	hypothetical protein	NA	A0A2H4PQJ2	Staphylococcus_phage	100.0	1.8e-24
WP_031267622.1|1650010_1650262_-	DUF1024 family protein	NA	M9NRI5	Staphylococcus_phage	100.0	1.1e-38
WP_000979209.1|1650558_1650906_-	hypothetical protein	NA	D2JGL4	Staphylococcus_phage	100.0	5.9e-59
WP_001668982.1|1650902_1651283_-	hypothetical protein	NA	A0A2K9VBT5	Staphylococcus_phage	100.0	8.4e-67
WP_000693989.1|1651285_1651492_-	hypothetical protein	NA	A0A2K9VBT9	Staphylococcus_phage	100.0	3.0e-34
WP_060474161.1|1651505_1651754_-	hypothetical protein	NA	A0A2K9VBX5	Staphylococcus_phage	100.0	1.2e-40
WP_000022722.1|1651753_1652008_-	DUF3310 domain-containing protein	NA	A0A2K9VBW1	Staphylococcus_phage	100.0	1.6e-42
WP_044426014.1|1652004_1652409_-	phage DNA polymerase	NA	A0A2K9VBY6	Staphylococcus_phage	100.0	3.3e-69
WP_001164629.1|1652408_1652594_-	DUF3113 family protein	NA	A0A2I6PEM8	Staphylococcus_phage	100.0	7.0e-27
WP_078064460.1|1652606_1654559_-	DNA polymerase	NA	A0A2K9VBT3	Staphylococcus_phage	100.0	0.0e+00
WP_000645045.1|1654626_1655184_-	DUF2815 family protein	NA	A0A2K9VBT2	Staphylococcus_phage	100.0	1.8e-97
WP_000762525.1|1655209_1656376_-	DUF2800 domain-containing protein	NA	A0A2K9VBU5	Staphylococcus_phage	100.0	7.0e-221
WP_000279445.1|1656372_1656735_-	hypothetical protein	NA	A0A2K9VBV1	Staphylococcus_phage	100.0	6.4e-56
WP_000174995.1|1656749_1657073_-	hypothetical protein	NA	A7TWG2	Staphylococcus_phage	100.0	5.0e-52
WP_015986189.1|1657151_1657313_-	DUF1270 family protein	NA	A7TWG1	Staphylococcus_phage	100.0	6.6e-21
WP_044426023.1|1657324_1657588_-	helix-turn-helix domain-containing protein	NA	A0A2K9VBS9	Staphylococcus_phage	100.0	5.7e-46
WP_001097552.1|1657612_1657828_-	hypothetical protein	NA	A0A2I6PF01	Staphylococcus_phage	100.0	1.9e-31
WP_001128433.1|1657882_1658248_+	hypothetical protein	NA	A0A2I6PF07	Staphylococcus_phage	100.0	2.4e-63
WP_001025401.1|1658216_1658462_-	DUF2829 domain-containing protein	NA	A0A2I6PF15	Staphylococcus_phage	100.0	5.1e-41
WP_000642492.1|1658517_1658727_+	hypothetical protein	NA	W5R9J5	Staphylococcus_phage	100.0	1.2e-30
WP_000939498.1|1658716_1658860_-	hypothetical protein	NA	W5R8I6	Staphylococcus_phage	100.0	2.5e-16
WP_000435360.1|1658874_1659318_-	hypothetical protein	NA	W5R971	Staphylococcus_phage	100.0	1.5e-75
WP_063653167.1|1659335_1659560_-	DUF739 family protein	NA	A0A2I6PE94	Staphylococcus_phage	98.6	2.9e-35
WP_001089477.1|1659721_1660102_+	helix-turn-helix domain-containing protein	NA	A0A2I6PE55	Staphylococcus_phage	99.2	1.5e-63
WP_001558059.1|1660123_1660582_+	hypothetical protein	NA	B2ZYU2	Staphylococcus_phage	99.3	3.5e-83
WP_000449655.1|1660949_1661345_+	hypothetical protein	NA	A0A2I6PEJ7	Staphylococcus_phage	100.0	3.8e-70
WP_001795334.1|1661435_1661582_+	hypothetical protein	NA	A0A2I6PEK8	Staphylococcus_phage	100.0	1.2e-16
WP_063663496.1|1661578_1662193_-	hypothetical protein	NA	M9QRQ8	Staphylococcus_phage	99.0	7.4e-105
WP_031864865.1|1662318_1663524_+|integrase	site-specific integrase	integrase	A0A2I6PEN0	Staphylococcus_phage	99.8	1.7e-222
WP_001558502.1|1663566_1665594_-	hypothetical protein	NA	B5WZK7	Staphylococcus_phage	100.0	1.6e-116
1663608:1663636	attR	AAATAAACATATCATCATAATGTGATGGT	NA	NA	NA	NA
WP_001557355.1|1665586_1666513_-	DUF1672 domain-containing protein	NA	NA	NA	NA	NA
WP_000987774.1|1666756_1668508_-	two-component system sensor histidine kinase SrrB	NA	A0A1V0SGX0	Hokovirus	33.2	2.2e-21
WP_000064078.1|1668488_1669214_-	two-component system response regulator SrrA	NA	W8CYM9	Bacillus_phage	43.0	3.5e-45
>prophage 10
NZ_CP013953	Staphylococcus aureus strain NCCP14558 isolate sequencing chromosome, complete genome	2955147	1808121	1817164	2955147	tRNA	uncultured_Mediterranean_phage(50.0%)	7	NA	NA
WP_000364542.1|1808121_1808640_-	adenine phosphoribosyltransferase	NA	A0A1V0SKE5	Klosneuvirus	46.5	5.6e-29
WP_000595011.1|1808661_1810935_-	single-stranded-DNA-specific exonuclease RecJ	NA	A7KV88	Bacillus_phage	29.3	8.1e-64
WP_000749795.1|1811137_1813417_-	protein translocase subunit SecDF	NA	A0A1B1IVP7	uncultured_Mediterranean_phage	35.8	1.8e-31
WP_001160682.1|1813691_1813952_-	preprotein translocase subunit YajC	NA	A0A1B1IVR5	uncultured_Mediterranean_phage	35.3	8.2e-05
WP_001112045.1|1813970_1815110_-|tRNA	tRNA guanosine(34) transglycosylase Tgt	tRNA	A0A1B1IVQ4	uncultured_Mediterranean_phage	44.7	5.4e-85
WP_001019178.1|1815132_1816158_-|tRNA	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	tRNA	NA	NA	NA	NA
WP_001005768.1|1816159_1817164_-	Holliday junction branch migration DNA helicase RuvB	NA	B3GAM6	uncultured_virus	29.1	1.7e-05
>prophage 11
NZ_CP013953	Staphylococcus aureus strain NCCP14558 isolate sequencing chromosome, complete genome	2955147	1948803	2006505	2955147	protease,tRNA	Staphylococcus_phage(95.35%)	54	NA	NA
WP_001050566.1|1948803_1955364_-	LPXTG-anchored repetitive surface protein SasC	NA	A0A2H4PQU6	Staphylococcus_phage	98.3	6.1e-306
WP_000836461.1|1955689_1956001_-	rhodanese-like domain-containing protein	NA	A0A2H4PQR9	Staphylococcus_phage	99.0	4.8e-52
WP_001557386.1|1956022_1958440_-|tRNA	leucine--tRNA ligase	tRNA	A0A2H4PQS0	Staphylococcus_phage	99.5	0.0e+00
WP_001025067.1|1958727_1959909_-	MFS transporter	NA	A0A2H4PQR6	Staphylococcus_phage	99.7	7.3e-218
WP_000526539.1|1960018_1960972_+	TIGR01212 family radical SAM protein	NA	A0A2H4PQV5	Staphylococcus_phage	100.0	2.2e-79
WP_000764419.1|1960968_1961532_+	class I SAM-dependent methyltransferase	NA	A0A2H4PQV0	Staphylococcus_phage	99.5	8.3e-103
WP_000757543.1|1961654_1962056_-	MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_000266096.1|1962626_1963454_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_001790712.1|1963456_1963576_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001196362.1|1963687_1964689_+	proline dehydrogenase	NA	A0A2H4PQT6	Staphylococcus_phage	99.4	2.6e-184
WP_001008549.1|1964810_1965275_-	6,7-dimethyl-8-ribityllumazine synthase	NA	A0A2H4PQS3	Staphylococcus_phage	100.0	4.5e-70
WP_001159037.1|1965287_1966469_-	3,4-dihydroxy-2-butanone-4-phosphate synthase	NA	A0A2H4PQS2	Staphylococcus_phage	99.5	5.6e-226
WP_000493887.1|1966479_1967112_-	riboflavin synthase	NA	A0A2H4PQS5	Staphylococcus_phage	98.6	5.5e-111
WP_000077358.1|1967118_1968162_-	bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD	NA	A0A2H4PQS8	Staphylococcus_phage	98.8	5.3e-196
WP_001261668.1|1968642_1970145_-	FAD/NAD(P)-binding protein	NA	A0A2H4PQX2	Staphylococcus_phage	98.6	1.9e-29
WP_000221177.1|1970667_1970982_+	winged helix-turn-helix transcriptional regulator	NA	A0A2H4PQT4	Staphylococcus_phage	98.1	9.8e-53
WP_000989121.1|1970981_1972274_+	arsenite efflux transporter membrane subunit ArsB	NA	A0A2H4PQU3	Staphylococcus_phage	99.5	5.0e-228
WP_001032833.1|1972360_1973215_-	glucosaminidase domain-containing protein	NA	Q4ZCC7	Staphylococcus_virus	38.6	9.8e-39
WP_000384171.1|1973490_1973715_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000671057.1|1973913_1974384_+	RNA polymerase sigma factor SigS	NA	A0A2H4PQT5	Staphylococcus_phage	98.1	8.8e-82
WP_001153742.1|1974496_1974940_+	competence protein ComK	NA	NA	NA	NA	NA
WP_001030469.1|1974926_1975370_-	hypothetical protein	NA	A0A2H4PQT8	Staphylococcus_phage	98.6	2.4e-57
WP_001168903.1|1975665_1976301_+|protease	CPBP family intramembrane metalloprotease SdpA	protease	NA	NA	NA	NA
WP_001096495.1|1976740_1977454_-	transaldolase	NA	M1PR54	Cyanophage	35.3	9.4e-19
WP_000091442.1|1977713_1978016_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001200542.1|1978271_1978637_+	fluoride efflux transporter CrcB	NA	A0A2H4PQR0	Staphylococcus_phage	100.0	3.6e-59
WP_000623470.1|1978633_1978987_+	CrcB family protein	NA	A0A2H4PQQ7	Staphylococcus_phage	94.0	3.8e-21
WP_000453306.1|1980983_1981817_-	aldo/keto reductase	NA	A0A2H4PQR8	Staphylococcus_phage	99.3	7.8e-158
WP_000366163.1|1982028_1982937_-	NERD domain-containing protein	NA	A0A2H4PQQ8	Staphylococcus_phage	100.0	3.4e-138
WP_000933820.1|1983058_1984255_-	methionine adenosyltransferase	NA	A0A2H4PQS6	Staphylococcus_phage	99.5	4.3e-218
WP_000109906.1|1984626_1986219_+	phosphoenolpyruvate carboxykinase (ATP)	NA	A0A2H4PQN1	Staphylococcus_phage	100.0	0.0e+00
WP_001822900.1|1986596_1987343_-	S9 family peptidase	NA	A0A2H4PQM6	Staphylococcus_phage	98.8	1.4e-142
WP_000672013.1|1987347_1987821_-	nucleoside triphosphatase YtkD	NA	A0A2H4PQM4	Staphylococcus_phage	98.7	7.2e-84
WP_000718107.1|1987886_1988144_+	membrane protein insertion efficiency factor YidD	NA	A0A2H4PQM5	Staphylococcus_phage	100.0	7.2e-46
WP_000778528.1|1988140_1989142_-	o-succinylbenzoate synthase	NA	A0A2H4PQM0	Staphylococcus_phage	97.3	5.3e-185
WP_000348364.1|1989146_1990625_-	o-succinylbenzoate--CoA ligase	NA	A0A2H4PQM9	Staphylococcus_phage	97.6	2.8e-283
WP_012840523.1|1990783_1991239_-	DUF4909 domain-containing protein	NA	A0A2H4PQN7	Staphylococcus_phage	99.3	3.6e-80
WP_001795210.1|1991541_1992192_+	excalibur calcium-binding domain-containing protein	NA	A0A2H4PQM8	Staphylococcus_phage	94.0	2.9e-51
WP_000070642.1|1992272_1993268_+	DUF4352 domain-containing protein	NA	A0A2H4PQN2	Staphylococcus_phage	97.9	2.6e-67
WP_000669024.1|1993342_1993969_+	hypothetical protein	NA	A0A2H4PQM7	Staphylococcus_phage	79.8	3.1e-74
WP_000627540.1|1994009_1994351_+	DUF3969 family protein	NA	A0A2H4PQN6	Staphylococcus_phage	94.7	1.1e-54
WP_000414216.1|1994451_1995024_+	hypothetical protein	NA	A0A2H4PQN4	Staphylococcus_phage	93.1	2.3e-23
WP_001801861.1|1996378_1996474_+	type I toxin-antitoxin system Fst family toxin PepA1	NA	NA	NA	NA	NA
WP_001792025.1|1996596_1996698_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000072627.1|1997773_1999003_-	restriction endonuclease subunit S	NA	A0A2H4PQP5	Staphylococcus_phage	64.7	4.0e-134
WP_000028669.1|1998995_2000552_-	type I restriction-modification system subunit M	NA	A0A2H4PQP4	Staphylococcus_phage	100.0	1.6e-289
WP_001791797.1|2000715_2000850_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001038752.1|2000912_2001632_-|protease	serine protease SplF	protease	A0A2H4PQP1	Staphylococcus_phage	99.6	1.9e-131
WP_011447030.1|2001733_2001841_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001038704.1|2001789_2002509_-|protease	serine protease SplD	protease	A0A2H4PQP9	Staphylococcus_phage	99.6	4.6e-130
WP_001038872.1|2002629_2003349_-|protease	serine protease SplC	protease	A0A2H4PQP7	Staphylococcus_phage	98.7	1.3e-129
WP_001039454.1|2003406_2004129_-|protease	serine protease SplB	protease	A0A2H4PQN0	Staphylococcus_phage	98.3	3.5e-130
WP_001039427.1|2004253_2004961_-|protease	serine protease SplA	protease	A0A2H4PQN3	Staphylococcus_phage	97.0	7.9e-127
WP_001092780.1|2005923_2006505_+	DUF4888 domain-containing protein	NA	A0A2H4PQH6	Staphylococcus_phage	64.8	9.6e-54
>prophage 12
NZ_CP013953	Staphylococcus aureus strain NCCP14558 isolate sequencing chromosome, complete genome	2955147	2051222	2127127	2955147	tRNA,terminase,tail,portal,holin,transposase,plate,capsid,integrase,head	Staphylococcus_phage(80.95%)	85	2097010:2097027	2130591:2130608
WP_000181394.1|2051222_2051693_-|tRNA	tRNA (uridine(34)/cytosine(34)/5- carboxymethylaminomethyluridine(34)-2'-O)- methyltransferase TrmL	tRNA	NA	NA	NA	NA
WP_000379980.1|2051697_2052825_-|tRNA	tRNA epoxyqueuosine(34) reductase QueG	tRNA	NA	NA	NA	NA
WP_000590809.1|2052975_2053698_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	42.7	1.3e-36
WP_000649908.1|2053690_2055148_-	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_000063580.1|2055405_2056467_-	PTS transporter subunit IIC	NA	NA	NA	NA	NA
WP_001557163.1|2057050_2058370_+|transposase	ISL3-like element IS1181 family transposase	transposase	NA	NA	NA	NA
WP_000110007.1|2066868_2067315_-	peroxide-responsive transcriptional repressor PerR	NA	NA	NA	NA	NA
WP_000869446.1|2067411_2068362_-	phosphoglycerate dehydrogenase	NA	NA	NA	NA	NA
WP_000939521.1|2068367_2068823_-	thioredoxin-dependent thiol peroxidase	NA	NA	NA	NA	NA
WP_001011595.1|2068903_2070193_+	glutamate-1-semialdehyde 2,1-aminomutase	NA	NA	NA	NA	NA
WP_001236371.1|2070485_2071580_+	aromatic acid exporter family protein	NA	NA	NA	NA	NA
WP_000597238.1|2071769_2073506_-	SAV1866 family putative multidrug efflux ABC transporter	NA	W8CYL7	Bacillus_phage	30.4	1.7e-53
WP_000251253.1|2073796_2074339_-	DUF402 domain-containing protein	NA	NA	NA	NA	NA
WP_000284765.1|2074641_2075679_-	A/G-specific adenine glycosylase	NA	NA	NA	NA	NA
WP_000379098.1|2075830_2076808_+	metal-dependent hydrolase	NA	NA	NA	NA	NA
WP_000886462.1|2077068_2077905_-	membrane protein	NA	NA	NA	NA	NA
WP_000535834.1|2077913_2079431_-	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
WP_000435806.1|2079445_2079760_-	YfhH family protein	NA	NA	NA	NA	NA
WP_001124422.1|2079737_2080556_-	recombination regulator RecX	NA	NA	NA	NA	NA
WP_042109405.1|2080815_2081625_-	monofunctional peptidoglycan glycosyltransferase SgtB	NA	NA	NA	NA	NA
WP_000163283.1|2081964_2082480_-	type 1 glutamine amidotransferase	NA	NA	NA	NA	NA
WP_001005407.1|2082610_2082772_-	hypothetical protein	NA	NA	NA	NA	NA
WP_106875183.1|2083118_2083199_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000180532.1|2083411_2083927_-	restriction endonuclease	NA	A0A0A7S0U2	Clostridium_phage	27.5	6.4e-09
WP_000990948.1|2083923_2084106_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001148121.1|2085869_2087315_-	SH3 domain-containing protein	NA	S4SVG5	Staphylococcus_phage	100.0	6.3e-296
WP_000354133.1|2087295_2087733_-|holin	phage holin	holin	S4SVG2	Staphylococcus_phage	100.0	2.4e-73
WP_031895303.1|2087788_2088184_-	hypothetical protein	NA	A0A0H4IPB8	Staphylococcus_phage	99.2	6.1e-68
WP_063663516.1|2088188_2089361_-|plate	BppU family phage baseplate upper protein	plate	S4SUQ8	Staphylococcus_phage	99.0	1.6e-196
WP_000355823.1|2091253_2091874_-	AP2 domain-containing protein	NA	A0A2H4J2S8	uncultured_Caudovirales_phage	43.4	4.3e-36
WP_001817316.1|2092366_2092666_-	DUF2951 domain-containing protein	NA	A0A0H4ITZ0	Staphylococcus_phage	99.0	9.9e-47
WP_000782199.1|2092705_2092879_-	XkdX family protein	NA	A0A0F6N3L7	Staphylococcus_phage	98.2	1.9e-26
WP_000705897.1|2092882_2093260_-	DUF2977 domain-containing protein	NA	A0A0F6N3G4	Staphylococcus_phage	99.2	7.6e-60
WP_000634521.1|2093259_2095083_-|plate	phage baseplate upper protein	plate	A0A0F6N3G2	Staphylococcus_phage	100.0	0.0e+00
WP_031874266.1|2095082_2096981_-	hypothetical protein	NA	Q4ZBQ2	Staphylococcus_phage	99.2	0.0e+00
WP_063663519.1|2096993_2098880_-|tail	phage tail protein	tail	A0A2I6PCV9	Staphylococcus_phage	99.2	0.0e+00
2097010:2097027	attL	TAATAATCCTTGATTAAC	NA	NA	NA	NA
WP_000560198.1|2098890_2099826_-|tail	phage tail family protein	tail	A7YGW1	Staphylococcus_virus	100.0	3.7e-180
WP_063663521.1|2099840_2102810_-|terminase	terminase	terminase	R4IG82	Staphylococcus_phage	99.8	1.2e-280
WP_001580347.1|2102812_2103154_-	hypothetical protein	NA	A0A2H4PQL5	Staphylococcus_phage	100.0	3.5e-56
WP_000141082.1|2103174_2103669_-	hypothetical protein	NA	R4IFM1	Staphylococcus_phage	100.0	4.3e-87
WP_000046067.1|2103730_2104291_-	hypothetical protein	NA	A0A0H4ITY2	Staphylococcus_phage	100.0	5.9e-101
WP_000270196.1|2104277_2104715_-	DUF3168 domain-containing protein	NA	A0A0E3T9M9	Staphylococcus_phage	100.0	2.1e-77
WP_001151335.1|2104727_2105141_-	HK97 gp10 family phage protein	NA	R4IG77	Staphylococcus_phage	100.0	2.0e-77
WP_000482986.1|2105127_2105463_-|head	phage head closure protein	head	A0A2H4PQL0	Staphylococcus_phage	100.0	3.0e-60
WP_000338935.1|2105455_2105770_-|head,tail	phage head-tail connector protein	head,tail	R4IFL8	Staphylococcus_phage	100.0	4.0e-54
WP_000278799.1|2105769_2106096_-	Rho termination factor N-terminal domain-containing protein	NA	A0A0E3TAL3	Staphylococcus_phage	100.0	4.3e-51
WP_001135558.1|2106112_2106937_-|capsid	N4-gp56 family major capsid protein	capsid	R4IH32	Staphylococcus_phage	100.0	5.6e-148
WP_000366932.1|2106957_2107554_-	phage scaffolding protein	NA	R4IG73	Staphylococcus_phage	100.0	5.6e-73
WP_000346033.1|2107658_2107865_-	hypothetical protein	NA	A0A0N9BB04	Staphylococcus_phage	100.0	3.2e-28
WP_049883866.1|2107866_2108850_-|capsid	minor capsid protein	capsid	A0A0N7E0U6	Staphylococcus_phage	96.2	2.0e-168
WP_001159668.1|2108788_2110267_-|portal	phage portal protein	portal	Q4ZB45	Staphylococcus_virus	99.6	3.3e-284
WP_001606760.1|2110220_2111429_-|terminase	PBSX family phage terminase large subunit	terminase	R4IG95	Staphylococcus_phage	100.0	6.1e-236
WP_000594082.1|2111421_2111916_-|terminase	terminase	terminase	R4IH30	Staphylococcus_phage	100.0	1.1e-74
WP_000162702.1|2112243_2112666_-	RinA family phage transcriptional activator	NA	Q4ZBJ7	Staphylococcus_phage	100.0	1.2e-74
WP_000989960.1|2112689_2112836_-	hypothetical protein	NA	Q4ZBJ8	Staphylococcus_phage	100.0	7.5e-16
WP_000989954.1|2112836_2113202_-	hypothetical protein	NA	Q4ZBJ9	Staphylococcus_phage	100.0	3.6e-59
WP_001606759.1|2113202_2113376_-	transcriptional activator RinB	NA	R4IFL3	Staphylococcus_phage	100.0	2.9e-22
WP_000483477.1|2113368_2113605_-	hypothetical protein	NA	A7TWB3	Staphylococcus_phage	100.0	1.9e-37
WP_000195796.1|2113629_2113866_-	DUF1381 domain-containing protein	NA	R4IH26	Staphylococcus_phage	98.7	3.1e-35
WP_000185669.1|2113902_2114439_-	dUTP diphosphatase	NA	R4IG63	Staphylococcus_phage	100.0	9.4e-96
WP_001065026.1|2114431_2114680_-	DUF1024 family protein	NA	S4V7K0	Staphylococcus_phage	100.0	4.1e-38
WP_001105618.1|2114672_2114957_-	hypothetical protein	NA	S4V9L1	Staphylococcus_phage	100.0	3.2e-47
WP_063663523.1|2114953_2115355_-	hypothetical protein	NA	Q4ZAC1	Staphylococcus_virus	99.2	9.5e-69
WP_063663525.1|2115367_2115610_-	hypothetical protein	NA	D2JGL2	Staphylococcus_phage	98.8	8.6e-41
WP_000101289.1|2115613_2115982_-	hypothetical protein	NA	W5RAK8	Staphylococcus_phage	98.4	2.0e-49
WP_063663526.1|2115994_2116399_-	RusA family crossover junction endodeoxyribonuclease	NA	D2JGK8	Staphylococcus_phage	98.5	6.4e-73
WP_001123684.1|2116408_2116630_-	DUF3269 family protein	NA	Q4ZBL4	Staphylococcus_phage	100.0	1.7e-35
WP_000237153.1|2116642_2116804_-	hypothetical protein	NA	D2JGK6	Staphylococcus_phage	100.0	4.5e-22
WP_063663528.1|2116797_2117577_-	ATP-binding protein	NA	Q9G022	Staphylococcus_virus	98.8	3.5e-144
WP_000190224.1|2117586_2118357_-	conserved phage C-terminal domain-containing protein	NA	W5R8N2	Staphylococcus_phage	100.0	1.4e-116
WP_016028252.1|2118402_2119062_+	hypothetical protein	NA	E0Y3Q0	Staphylococcus_virus	100.0	1.4e-120
WP_063663530.1|2119171_2119846_-	hypothetical protein	NA	R4IH15	Staphylococcus_phage	100.0	1.6e-129
WP_000934780.1|2119859_2120285_-	single-stranded DNA-binding protein	NA	R4IG44	Staphylococcus_phage	100.0	3.0e-73
WP_001043065.1|2120284_2120923_-	ERF family protein	NA	R4II59	Staphylococcus_phage	100.0	1.7e-115
WP_000291092.1|2121417_2121678_-	DUF1108 family protein	NA	R4IG75	Staphylococcus_phage	100.0	8.9e-44
WP_063663534.1|2121774_2121936_-	DUF1270 family protein	NA	R4IH12	Staphylococcus_phage	100.0	3.3e-20
WP_063663537.1|2121928_2122150_-	hypothetical protein	NA	B2ZYU8	Staphylococcus_phage	98.6	5.6e-31
WP_015978329.1|2122220_2122874_+	hypothetical protein	NA	A0A0H4IPV1	Staphylococcus_phage	100.0	4.5e-116
WP_063663540.1|2122883_2123027_-	hypothetical protein	NA	W5R8I6	Staphylococcus_phage	97.9	7.4e-16
WP_001148861.1|2123057_2123255_-	hypothetical protein	NA	A0A1W6JPV3	Staphylococcus_phage	100.0	1.2e-24
WP_001148566.1|2123271_2124060_-	phage antirepressor KilAC domain-containing protein	NA	A0EWP1	Staphylococcus_virus	100.0	4.2e-145
WP_001106626.1|2124075_2124330_-	helix-turn-helix transcriptional regulator	NA	C5I625	Staphylococcus_phage	98.8	1.4e-41
WP_000874708.1|2124519_2125158_+	LexA family transcriptional regulator	NA	A0EWH5	Staphylococcus_virus	100.0	1.1e-116
WP_000392109.1|2125189_2125870_+	type II toxin-antitoxin system PemK/MazF family toxin	NA	A0A2H4PQQ5	Staphylococcus_phage	100.0	5.1e-123
WP_001145722.1|2126080_2127127_+|integrase	site-specific integrase	integrase	Q4ZB10	Staphylococcus_virus	100.0	5.5e-201
2130591:2130608	attR	TAATAATCCTTGATTAAC	NA	NA	NA	NA
>prophage 13
NZ_CP013953	Staphylococcus aureus strain NCCP14558 isolate sequencing chromosome, complete genome	2955147	2150023	2220659	2955147	protease,coat,tRNA,terminase,transposase,capsid,integrase	Staphylococcus_phage(58.82%)	72	2149359:2149383	2223774:2223798
2149359:2149383	attL	ACCCCAACTTGCATTGTCTGTAGAA	NA	NA	NA	NA
WP_000545370.1|2150023_2151451_-|tRNA	Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatB	tRNA	NA	NA	NA	NA
WP_000027919.1|2151463_2152921_-|tRNA	Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatA	tRNA	NA	NA	NA	NA
WP_000170162.1|2152922_2153225_-|tRNA	Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatC	tRNA	NA	NA	NA	NA
WP_000957020.1|2153591_2155130_+	sodium/proline symporter PutP	NA	NA	NA	NA	NA
WP_000831700.1|2155218_2156418_-	CamS family sex pheromone protein	NA	NA	NA	NA	NA
WP_000774556.1|2156430_2158434_-	NAD-dependent DNA ligase LigA	NA	A0A0K2QQN8	Ralstonia_phage	36.2	1.2e-114
WP_000992924.1|2158437_2160630_-	DNA helicase PcrA	NA	A7KV33	Bacillus_phage	42.2	1.0e-135
WP_000272056.1|2160626_2161319_-	heptaprenylglyceryl phosphate synthase	NA	NA	NA	NA	NA
WP_001165363.1|2161490_2161793_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000572878.1|2161901_2163197_-	adenylosuccinate lyase	NA	A0A1B3B081	Gordonia_phage	32.9	1.6e-16
WP_000195429.1|2164044_2165217_-|transposase	IS256-like element IS256 family transposase	transposase	A0A0N9STL0	Staphylococcus_phage	100.0	3.5e-135
WP_000827746.1|2165388_2166555_+|protease	cysteine protease staphopain A	protease	NA	NA	NA	NA
WP_000434933.1|2166585_2166912_+	staphostatin A	NA	NA	NA	NA	NA
WP_000669862.1|2167203_2167377_-	NETI motif-containing protein	NA	NA	NA	NA	NA
WP_000011542.1|2167357_2167960_-	DUF2179 domain-containing protein	NA	NA	NA	NA	NA
WP_000040866.1|2168230_2169052_-	ammonia-dependent NAD(+) synthetase	NA	G3MA24	Bacillus_virus	52.7	2.3e-69
WP_000284436.1|2169044_2170514_-	nicotinate phosphoribosyltransferase	NA	G3MA18	Bacillus_virus	45.1	5.9e-108
WP_000897635.1|2170697_2171774_+	nitric oxide synthase oxygenase	NA	NA	NA	NA	NA
WP_001177828.1|2171793_2172588_+	prephenate dehydratase	NA	NA	NA	NA	NA
WP_001802312.1|2172659_2172767_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000323161.1|2172777_2174340_-	SLC13 family permease	NA	NA	NA	NA	NA
WP_000275727.1|2174544_2175642_-	pectate lyase	NA	U5PWM6	Bacillus_phage	34.6	3.3e-47
WP_000149686.1|2176010_2176571_+	cysteine hydrolase	NA	G3MA16	Bacillus_virus	41.2	2.0e-32
WP_001140871.1|2176623_2177553_+	manganese-dependent inorganic pyrophosphatase	NA	NA	NA	NA	NA
WP_001792184.1|2177745_2177919_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001021210.1|2177970_2179350_+	aldehyde dehydrogenase	NA	NA	NA	NA	NA
WP_000181315.1|2179469_2180498_-	lactonase family protein	NA	NA	NA	NA	NA
WP_000205106.1|2180767_2181169_+	YolD-like family protein	NA	U3PG23	Staphylococcus_phage	42.9	6.0e-23
WP_000267034.1|2181741_2181915_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001188043.1|2182365_2183406_+	linear amide C-N hydrolase	NA	NA	NA	NA	NA
WP_000713072.1|2183462_2184305_-	DUF4097 family beta strand repeat protein	NA	NA	NA	NA	NA
WP_001033971.1|2184301_2184859_-	DUF1700 domain-containing protein	NA	NA	NA	NA	NA
WP_000966288.1|2184918_2185443_-	membrane protein	NA	NA	NA	NA	NA
WP_000182842.1|2185563_2186127_+	thioredoxin family protein	NA	NA	NA	NA	NA
WP_001221651.1|2186192_2186933_-	phenol-soluble modulin export ABC transporter permease subunit PmtD	NA	NA	NA	NA	NA
WP_000645727.1|2187802_2188483_-	phenol-soluble modulin export ABC transporter permease subunit PmtB	NA	NA	NA	NA	NA
WP_000991306.1|2188483_2189380_-	phenol-soluble modulin export ABC transporter ATP-binding protein PmtA	NA	A0A2H4PQG7	Staphylococcus_phage	30.2	5.0e-17
WP_000691584.1|2189376_2189757_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_000681968.1|2190014_2190191_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000990056.1|2190433_2190532_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001068542.1|2190731_2192018_+	aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme	NA	NA	NA	NA	NA
WP_063663554.1|2192296_2192587_-	MAP domain-containing protein	NA	NA	NA	NA	NA
WP_001558588.1|2192597_2194031_-	extracellular adherence protein Eap/Map	NA	NA	NA	NA	NA
WP_078242670.1|2194376_2195411_+	sphingomyelin phosphodiesterase	NA	A0A1P8L6H7	Staphylococcus_phage	99.6	2.5e-161
WP_000595392.1|2195648_2196665_-	bi-component leukocidin LukGH subunit G	NA	A0A1X9IGW5	Staphylococcus_phage	30.2	6.7e-26
WP_000791411.1|2196686_2197742_-	bi-component leukocidin LukGH subunit H	NA	A0A1X9IGW5	Staphylococcus_phage	34.3	2.8e-35
WP_000206625.1|2198177_2199401_+	ArgE/DapE family deacylase	NA	NA	NA	NA	NA
WP_001045079.1|2199844_2201152_+	TrkH family potassium uptake protein	NA	NA	NA	NA	NA
WP_000746599.1|2202168_2202891_+	staphylococcal enterotoxin type L	NA	A0A1X9H080	Staphylococcus_phage	34.9	2.1e-26
WP_000278088.1|2203059_2203860_-	staphylococcal enterotoxin type C3	NA	A0A097PAT7	Streptococcus_pyogenes_phage	47.5	6.1e-51
WP_000195429.1|2204185_2205358_+|transposase	IS256-like element IS256 family transposase	transposase	A0A0N9STL0	Staphylococcus_phage	100.0	3.5e-135
WP_001035616.1|2205979_2206540_+	DUF4888 domain-containing protein	NA	Q4ZBG8	Staphylococcus_virus	68.1	5.4e-62
WP_001035599.1|2207417_2208122_+	toxic shock syndrome toxin TSST-1	NA	NA	NA	NA	NA
WP_001293088.1|2208276_2208846_-|terminase	terminase small subunit	terminase	Q4ZE85	Staphylococcus_phage	97.4	7.9e-101
WP_000358774.1|2208842_2209184_-	hypothetical protein	NA	A0A1W6JQM3	Staphylococcus_phage	99.1	1.4e-57
WP_000771368.1|2209186_2209714_-|coat	spore coat protein	coat	A0A1W6JQH7	Staphylococcus_phage	97.1	3.5e-87
WP_000448770.1|2209764_2209983_-|capsid	capsid morphogenesis B protein	capsid	NA	NA	NA	NA
WP_000846280.1|2210000_2210579_-	hypothetical protein	NA	A0A2H4JBG0	uncultured_Caudovirales_phage	38.9	4.8e-29
WP_001190615.1|2210590_2210932_-	hypothetical protein	NA	Q4ZE66	Staphylococcus_phage	99.1	1.4e-57
WP_063663566.1|2211381_2212023_-	pathogenicity island protein	NA	Q4ZE67	Staphylococcus_phage	92.5	2.1e-110
WP_000356942.1|2212019_2212400_-	hypothetical protein	NA	Q4ZE71	Staphylococcus_phage	96.8	1.7e-67
WP_000447473.1|2212709_2214419_-	DUF927 domain-containing protein	NA	Q4ZE73	Staphylococcus_phage	92.8	1.4e-302
WP_001002689.1|2214432_2215302_-	primase C-terminal domain-containing protein	NA	Q4ZE74	Staphylococcus_phage	96.2	1.5e-164
WP_001078344.1|2215366_2215693_-	DUF1474 family protein	NA	Q4ZE75	Staphylococcus_phage	89.8	1.5e-48
WP_025175789.1|2215695_2215845_-	hypothetical protein	NA	Q4ZE76	Staphylococcus_phage	93.9	2.5e-19
WP_000784885.1|2215897_2216044_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000481967.1|2216040_2216358_-	helix-turn-helix domain-containing protein	NA	A0A1W6JQE0	Staphylococcus_phage	98.1	9.2e-51
WP_000153640.1|2216362_2216581_-	helix-turn-helix transcriptional regulator	NA	A0A2H4JB11	uncultured_Caudovirales_phage	66.7	1.3e-19
WP_000620857.1|2216753_2217428_+	helix-turn-helix transcriptional regulator	NA	A0A2H4JGT9	uncultured_Caudovirales_phage	45.8	1.6e-39
WP_000179343.1|2217441_2218614_+|integrase	tyrosine-type recombinase/integrase	integrase	A0A1W6JQD3	Staphylococcus_phage	96.2	5.8e-215
WP_000240642.1|2218682_2220299_-	chaperonin GroEL	NA	A0A240F779	uncultured_virus	54.7	3.4e-157
WP_000917289.1|2220374_2220659_-	co-chaperone GroES	NA	A0A221S386	uncultured_virus	46.2	4.7e-14
2223774:2223798	attR	ACCCCAACTTGCATTGTCTGTAGAA	NA	NA	NA	NA
