assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_001636255.1_ASM163625v1	NZ_CP015379	Hafnia alvei strain HUMV-5920 chromosome, complete genome	1	1622949-1623047	1	CRISPRCasFinder	no		DinG,DEDDh,cas3,WYL,csa3	Orphan	GACCCCCTCCCAACCTCCCCCTTGACAGGGGGAGG	35	0	0	NA	NA	NA	1	1	Orphan	DinG,DEDDh,cas3,WYL,csa3	NA|102aa|up_6|NZ_CP015379.1_1617126_1617432_+,NA	NA|290aa|up_9|NZ_CP015379.1_1614300_1615170_+	NF033376, flg_lateral_LafA, lateral flagellin LafA	NA|441aa|up_8|NZ_CP015379.1_1615400_1616723_+	COG1345, FliD, Flagellar capping protein [Cell motility and secretion]	NA|132aa|up_7|NZ_CP015379.1_1616738_1617134_+	pfam02561, FliS, Flagellar protein FliS	NA|102aa|up_6|NZ_CP015379.1_1617126_1617432_+	NA	NA|373aa|up_5|NZ_CP015379.1_1617431_1618550_+	cd17470, T3SS_Flik_C, C-terminal domain of flagellar hook-length control protein FliK and similar domains	NA|157aa|up_4|NZ_CP015379.1_1618569_1619040_+	pfam03748, FliL, Flagellar basal body-associated protein FliL	NA|229aa|up_3|NZ_CP015379.1_1619070_1619757_+	PRK12427, PRK12427, FliA/WhiG family RNA polymerase sigma factor	NA|288aa|up_2|NZ_CP015379.1_1619770_1620634_+	PRK12482, PRK12482, flagellar motor stator protein MotA	NA|320aa|up_1|NZ_CP015379.1_1620633_1621593_+	PRK06778, PRK06778, hypothetical protein; Validated	NA|303aa|up_0|NZ_CP015379.1_1622031_1622940_+	PRK09432, metF, methylenetetrahydrofolate reductase	NA|107aa|down_0|NZ_CP015379.1_1623184_1623505_-	PRK05264, PRK05264, met regulon transcriptional regulator MetJ	NA|388aa|down_1|NZ_CP015379.1_1623781_1624945_+	PRK08045, PRK08045, cystathionine gamma-synthase; Provisional	NA|812aa|down_2|NZ_CP015379.1_1625001_1627437_+	PRK09466, metL, bifunctional aspartate kinase II/homoserine dehydrogenase II; Provisional	NA|153aa|down_3|NZ_CP015379.1_1628206_1628665_+	COG0590, CumB, Cytosine/adenosine deaminases [Nucleotide transport and metabolism / Translation, ribosomal structure and biogenesis]	NA|399aa|down_4|NZ_CP015379.1_1628661_1629858_+	PRK09705, cynX, putative cyanate transporter; Provisional	NA|775aa|down_5|NZ_CP015379.1_1629912_1632237_-	PRK10658, PRK10658, putative alpha-glucosidase; Provisional	NA|470aa|down_6|NZ_CP015379.1_1632223_1633633_-	PRK11462, PRK11462, putative transporter; Provisional	NA|192aa|down_7|NZ_CP015379.1_1633824_1634400_-	cd03135, GATase1_DJ-1, Type 1 glutamine amidotransferase (GATase1)-like domain found in Human DJ-1	NA|296aa|down_8|NZ_CP015379.1_1634794_1635682_+	pfam08450, SGL, SMP-30/Gluconolaconase/LRE-like region	NA|108aa|down_9|NZ_CP015379.1_1635975_1636299_+	PRK10499, PRK10499, PTS sugar transporter subunit IIB
GCF_001636255.1_ASM163625v1	NZ_CP015379	Hafnia alvei strain HUMV-5920 chromosome, complete genome	2	2130648-2130735	2	CRISPRCasFinder	no		DinG,DEDDh,cas3,WYL,csa3	Orphan	AGCAGATCGAACTCTTCATCACTAT	25	0	0	NA	NA	NA	1	1	Orphan	DinG,DEDDh,cas3,WYL,csa3	NA|228aa|up_3|NZ_CP015379.1_2124405_2125089_+,NA|140aa|down_4|NZ_CP015379.1_2137933_2138353_+	NA|508aa|up_9|NZ_CP015379.1_2116103_2117627_+	PRK03356, PRK03356, L-carnitine/gamma-butyrobetaine antiport BCCT transporter	NA|381aa|up_8|NZ_CP015379.1_2117680_2118823_+	PRK03354, PRK03354, crotonobetainyl-CoA dehydrogenase; Validated	NA|402aa|up_7|NZ_CP015379.1_2119102_2120308_+	PRK03525, PRK03525, L-carnitine CoA-transferase	NA|524aa|up_6|NZ_CP015379.1_2120335_2121907_+	PRK08008, caiC, putative crotonobetaine/carnitine-CoA ligase; Validated	NA|261aa|up_5|NZ_CP015379.1_2121921_2122704_+	PRK03580, PRK03580, crotonobetainyl-CoA hydratase	NA|345aa|up_4|NZ_CP015379.1_2123378_2124413_+	pfam06406, StbA, StbA protein	NA|228aa|up_3|NZ_CP015379.1_2124405_2125089_+	NA	NA|367aa|up_2|NZ_CP015379.1_2125821_2126922_+	pfam07759, DUF1615, Protein of unknown function (DUF1615)	NA|304aa|up_1|NZ_CP015379.1_2127058_2127970_+	PRK09685, PRK09685, DNA-binding transcriptional activator FeaR; Provisional	NA|756aa|up_0|NZ_CP015379.1_2128328_2130596_+	PRK14696, tynA, primary-amine oxidase	NA|500aa|down_0|NZ_CP015379.1_2130796_2132296_-	cd07113, ALDH_PADH_NahF, Escherichia coli NAD+-dependent phenylacetaldehyde dehydrogenase PadA-like	NA|358aa|down_1|NZ_CP015379.1_2132776_2133850_+	PRK03598, PRK03598, putative efflux pump membrane fusion protein; Provisional	NA|920aa|down_2|NZ_CP015379.1_2133846_2136606_+	COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms]	NA|375aa|down_3|NZ_CP015379.1_2136605_2137730_+	COG0842, COG0842, ABC-type multidrug transport system, permease component [Defense mechanisms]	NA|140aa|down_4|NZ_CP015379.1_2137933_2138353_+	NA	NA|296aa|down_5|NZ_CP015379.1_2138407_2139295_-	COG1741, COG1741, Pirin-related protein [General function prediction only]	NA|235aa|down_6|NZ_CP015379.1_2139390_2140095_-	COG1285, SapB, Uncharacterized membrane protein [Function unknown]	NA|419aa|down_7|NZ_CP015379.1_2140696_2141953_-	COG3069, DcuC, C4-dicarboxylate transporter [Energy production and conversion]	NA|372aa|down_8|NZ_CP015379.1_2141966_2143082_-	cd01320, ADA, Adenosine deaminase (ADA) is a monomeric zinc dependent enzyme which catalyzes the irreversible hydrolytic deamination of both adenosine, as well as desoxyadenosine, to ammonia and inosine or desoxyinosine, respectively	NA|304aa|down_9|NZ_CP015379.1_2143228_2144140_-	PRK10082, PRK10082, hypochlorite stress DNA-binding transcriptional regulator HypT
GCF_001636255.1_ASM163625v1	NZ_CP015379	Hafnia alvei strain HUMV-5920 chromosome, complete genome	3	2450141-2450230	3	CRISPRCasFinder	no		DinG,DEDDh,cas3,WYL,csa3	Orphan	GAAGGGGTAGCAGTGATGTTTATA	24	0	0	NA	NA	NA	1	1	Orphan	DinG,DEDDh,cas3,WYL,csa3	NA,NA	NA|151aa|up_9|NZ_CP015379.1_2441706_2442159_+	COG2893, ManX, Phosphotransferase system, mannose/fructose-specific component IIA [Carbohydrate transport and metabolism]	NA|155aa|up_8|NZ_CP015379.1_2442288_2442753_+	COG4807, COG4807, Uncharacterized protein conserved in bacteria [Function unknown]	NA|258aa|up_7|NZ_CP015379.1_2443233_2444007_+	COG1349, GlpR, Transcriptional regulators of sugar metabolism [Transcription / Carbohydrate transport and metabolism]	NA|439aa|up_6|NZ_CP015379.1_2444049_2445366_+	pfam08013, Tagatose_6_P_K, Tagatose 6 phosphate kinase	NA|393aa|up_5|NZ_CP015379.1_2445362_2446541_+	TIGR02815, agaS_fam, putative sugar isomerase, AgaS family	NA|161aa|up_4|NZ_CP015379.1_2446558_2447041_+	PRK11425, PRK11425, PTS N-acetylgalactosamine transporter subunit IIB	NA|264aa|up_3|NZ_CP015379.1_2447053_2447845_+	pfam03609, EII-Sor, PTS system sorbose-specific iic component	NA|298aa|up_2|NZ_CP015379.1_2447834_2448728_+	pfam03613, EIID-AGA, PTS system mannose/fructose/sorbose family IID component	NA|148aa|up_1|NZ_CP015379.1_2448737_2449181_+	COG2893, ManX, Phosphotransferase system, mannose/fructose-specific component IIA [Carbohydrate transport and metabolism]	NA|285aa|up_0|NZ_CP015379.1_2449193_2450048_+	PRK09195, gatY, tagatose-bisphosphate aldolase; Reviewed	NA|440aa|down_0|NZ_CP015379.1_2450409_2451729_+	cd10966, CE4_yadE_5s, Putative catalytic polysaccharide deacetylase domain of uncharacterized protein yadE and similar proteins	NA|127aa|down_1|NZ_CP015379.1_2451933_2452314_-	PRK05449, PRK05449, aspartate alpha-decarboxylase; Provisional	NA|287aa|down_2|NZ_CP015379.1_2452441_2453302_-	PRK00380, panC, pantoate--beta-alanine ligase; Reviewed	NA|265aa|down_3|NZ_CP015379.1_2453370_2454165_-	PRK00311, panB, 3-methyl-2-oxobutanoate hydroxymethyltransferase; Reviewed	NA|160aa|down_4|NZ_CP015379.1_2454386_2454866_-	PRK10239, PRK10239, 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase	NA|481aa|down_5|NZ_CP015379.1_2454862_2456305_-	PRK11623, pcnB, poly(A) polymerase I; Provisional	NA|292aa|down_6|NZ_CP015379.1_2456408_2457284_-	PRK05710, PRK05710, tRNA glutamyl-Q(34) synthetase GluQRS	NA|152aa|down_7|NZ_CP015379.1_2457435_2457891_-	PRK10778, dksA, RNA polymerase-binding protein DksA	NA|236aa|down_8|NZ_CP015379.1_2458083_2458791_-	PRK00347, PRK00347, DNA/RNA nuclease SfsA	NA|187aa|down_9|NZ_CP015379.1_2458846_2459407_-	PRK15124, PRK15124, RNA 2',3'-cyclic phosphodiesterase
GCF_001636255.1_ASM163625v1	NZ_CP015379	Hafnia alvei strain HUMV-5920 chromosome, complete genome	4	3132682-3133789	1,4,1,2	PILER-CR,CRISPRCasFinder,CRT,PILER-CR	no		DinG,DEDDh,cas3,WYL,csa3	Orphan	AGTTCACTGCCGTACAGGCAGCTTAGAAA,GTTCACTGCCGTACAGGCAGCTTAGAAA,GTTCACTGCCGTACAGGCAGCTTAGAAA,GTTCACTGCCGTACAGGCAGCTTAGAAA	29,28,28,28	0	0	NA	NA	I-F:I-F:I-F:I-F	15,18,18,15	18	Orphan	DinG,DEDDh,cas3,WYL,csa3	NA,NA|86aa|down_0|NZ_CP015379.1_3133878_3134136_+,NA|21aa|down_9|NZ_CP015379.1_3141849_3141912_+	NA|478aa|up_9|NZ_CP015379.1_3122545_3123979_-	cd08156, catalase_clade_3, Clade 3 of the heme-binding enzyme catalase	NA|182aa|up_8|NZ_CP015379.1_3124367_3124913_+	pfam07437, YfaZ, YfaZ precursor	NA|342aa|up_7|NZ_CP015379.1_3125131_3126157_-	PRK12282, PRK12282, tryptophanyl-tRNA synthetase II; Reviewed	NA|404aa|up_6|NZ_CP015379.1_3126336_3127548_-	PRK15132, PRK15132, tyrosine transporter TyrP; Provisional	NA|398aa|up_5|NZ_CP015379.1_3127758_3128952_+	PRK03673, PRK03673, nicotinamide mononucleotide deamidase-related protein YfaY	NA|303aa|up_4|NZ_CP015379.1_3129039_3129948_-	TIGR01826, Putative_gluconeogenesis_factor, conserved hypothetical protein, cofD-related	NA|329aa|up_3|NZ_CP015379.1_3130343_3131330_+	PRK00164, moaA, GTP 3',8-cyclase MoaA	NA|161aa|up_2|NZ_CP015379.1_3131366_3131849_+	PRK09364, moaC, cyclic pyranopterin monophosphate synthase MoaC	NA|81aa|up_1|NZ_CP015379.1_3131845_3132088_+	PRK11130, moaD, molybdopterin synthase small subunit; Provisional	NA|151aa|up_0|NZ_CP015379.1_3132090_3132543_+	PRK10678, moaE, molybdopterin synthase catalytic subunit MoaE	NA|86aa|down_0|NZ_CP015379.1_3133878_3134136_+	NA	NA|145aa|down_1|NZ_CP015379.1_3134196_3134631_-	pfam12883, DUF3828, Protein of unknown function (DUF3828)	NA|193aa|down_2|NZ_CP015379.1_3134905_3135484_+	COG0655, WrbA, Multimeric flavodoxin WrbA [General function prediction only]	NA|237aa|down_3|NZ_CP015379.1_3135746_3136457_+	cd10432, BI-1-like_bacterial, Bacterial BAX inhibitor (BI)-1/YccA-like proteins	NA|239aa|down_4|NZ_CP015379.1_3136543_3137260_-	COG1124, DppF, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]	NA|284aa|down_5|NZ_CP015379.1_3137246_3138098_-	COG0444, DppD, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]	NA|275aa|down_6|NZ_CP015379.1_3138090_3138915_-	COG1173, DppC, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism]	NA|348aa|down_7|NZ_CP015379.1_3138914_3139958_-	COG0601, DppB, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism]	NA|527aa|down_8|NZ_CP015379.1_3139994_3141575_-	cd08512, PBP2_NikA_DppA_OppA_like_7, The substrate-binding component of an uncharacterized ABC-type nickel/dipeptide/oligopeptide-like import system contains the type 2 periplasmic binding fold	NA|21aa|down_9|NZ_CP015379.1_3141849_3141912_+	NA
GCF_001636255.1_ASM163625v1	NZ_CP015379	Hafnia alvei strain HUMV-5920 chromosome, complete genome	5	3195092-3195539	3,5,2	PILER-CR,CRISPRCasFinder,CRT	no		DinG,DEDDh,cas3,WYL,csa3	Orphan	GTTCACTGCCGTACAGGCAGCTTAGAAA,GTTCACTGCCGTACAGGCAGCTTAGAAA,GTTCACTGCCGTACAGGCAGCTTAGAAA	28,28,28	0	0	NA	NA	I-F:I-F:I-F	6,7,7	7	Orphan	DinG,DEDDh,cas3,WYL,csa3	NA|112aa|up_0|NZ_CP015379.1_3194268_3194604_-,NA	NA|147aa|up_9|NZ_CP015379.1_3185229_3185670_+	cd04683, Nudix_Hydrolase_24, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X	NA|595aa|up_8|NZ_CP015379.1_3185879_3187664_-	COG3083, COG3083, Predicted hydrolase of alkaline phosphatase superfamily [General function prediction only]	NA|76aa|up_7|NZ_CP015379.1_3187693_3187921_-	PRK13689, PRK13689, hypothetical protein; Provisional	NA|336aa|up_6|NZ_CP015379.1_3188254_3189262_+	PRK00378, PRK00378, nucleoid-associated protein NdpA; Validated	NA|95aa|up_5|NZ_CP015379.1_3189370_3189655_-	PRK05943, PRK05943, 50S ribosomal protein L25; Reviewed	NA|587aa|up_4|NZ_CP015379.1_3189801_3191562_-	COG1061, SSL2, DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair]	NA|80aa|up_3|NZ_CP015379.1_3191584_3191824_-	pfam10678, DUF2492, Protein of unknown function (DUF2492)	NA|241aa|up_2|NZ_CP015379.1_3192137_3192860_+	PRK10839, PRK10839, 16S rRNA pseudouridine(516) synthase RsuA	NA|404aa|up_1|NZ_CP015379.1_3192970_3194182_+	PRK11102, PRK11102, Bcr/CflA family multidrug efflux MFS transporter	NA|112aa|up_0|NZ_CP015379.1_3194268_3194604_-	NA	NA|132aa|down_0|NZ_CP015379.1_3196160_3196556_+	PRK11835, PRK11835, hypothetical protein; Provisional	NA|536aa|down_1|NZ_CP015379.1_3196636_3198244_-	PRK15134, PRK15134, microcin C ABC transporter ATP-binding protein YejF; Provisional	NA|341aa|down_2|NZ_CP015379.1_3198245_3199268_-	COG4239, COG4239, ABC-type uncharacterized transport system, permease component [General function prediction only]	NA|366aa|down_3|NZ_CP015379.1_3199267_3200365_-	PRK15133, PRK15133, microcin C ABC transporter permease YejB; Provisional	NA|609aa|down_4|NZ_CP015379.1_3200376_3202203_-	cd08497, PBP2_NikA_DppA_OppA_like_14, The substrate-binding component of an uncharacterized ABC-type nickel/dipeptide/oligopeptide-like import system contains the type 2 periplasmic binding fold	NA|525aa|down_5|NZ_CP015379.1_3202445_3204020_-	PRK10551, PRK10551, cyclic di-GMP phosphodiesterase	NA|212aa|down_6|NZ_CP015379.1_3204315_3204951_-	COG1853, COG1853, Conserved protein/domain typically associated with flavoprotein oxygenases, DIM6/NTAB family [General function prediction only]	NA|316aa|down_7|NZ_CP015379.1_3205190_3206138_+	PRK11727, PRK11727, 23S rRNA (adenine(1618)-N(6))-methyltransferase RlmF	NA|741aa|down_8|NZ_CP015379.1_3206188_3208411_-	PRK11465, PRK11465, putative mechanosensitive channel protein; Provisional	NA|241aa|down_9|NZ_CP015379.1_3208663_3209386_-	PRK09493, glnQ, glutamine ABC transporter ATP-binding protein GlnQ
