The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP011281	Enterococcus faecium strain E39, complete genome	2790106	78985	225934	2790106	transposase,tRNA,holin	Streptococcus_phage(13.51%)	124	NA	NA
WP_002298563.1|78985_79732_+|tRNA	tRNA pseudouridine(38-40) synthase TruA	tRNA	NA	NA	NA	NA
WP_002301399.1|80404_81364_+|transposase	IS30 family transposase	transposase	H7BW61	unidentified_phage	26.8	2.2e-10
WP_002326711.1|81573_82752_+|transposase	IS256-like element ISEf1 family transposase	transposase	NA	NA	NA	NA
WP_002317041.1|83096_83435_-	arsenic metallochaperone ArsD family protein	NA	NA	NA	NA	NA
WP_002348801.1|83569_83971_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002317547.1|84082_84703_+	AAA family ATPase	NA	NA	NA	NA	NA
WP_002294300.1|84793_87463_-	YfhO family protein	NA	NA	NA	NA	NA
WP_002290463.1|87700_87889_-	50S ribosomal protein L28	NA	NA	NA	NA	NA
WP_002294298.1|88158_88521_+	Asp23/Gls24 family envelope stress response protein	NA	NA	NA	NA	NA
WP_002301169.1|88572_90255_+	DAK2 domain-containing protein	NA	NA	NA	NA	NA
WP_002301167.1|90371_92408_+	ATP-dependent DNA helicase RecG	NA	A0A2H4JBQ0	uncultured_Caudovirales_phage	22.9	5.3e-06
WP_002289721.1|92456_93458_+	phosphate acyltransferase PlsX	NA	NA	NA	NA	NA
WP_002294295.1|93579_93822_+	acyl carrier protein	NA	NA	NA	NA	NA
WP_002287889.1|94089_95094_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	32.2	5.1e-18
WP_002287891.1|95094_96039_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	35.1	3.9e-20
WP_002287892.1|96038_97001_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_002287893.1|97027_97942_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_002287894.1|97967_99749_+	oligopeptide ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_002287896.1|100096_100783_+	ribonuclease III	NA	K7YH73	Megavirus	32.3	9.1e-27
WP_002301166.1|100802_104384_+	chromosome segregation protein SMC	NA	NA	NA	NA	NA
WP_002348798.1|104392_105202_+	Cof-type HAD-IIB family hydrolase	NA	NA	NA	NA	NA
WP_002301165.1|105213_106212_+	signal recognition particle-docking protein FtsY	NA	NA	NA	NA	NA
WP_002294288.1|106398_108666_+	bifunctional glutamate--cysteine ligase GshA/glutathione synthetase GshB	NA	NA	NA	NA	NA
WP_002326066.1|108849_109803_+|transposase	IS30 family transposase	transposase	NA	NA	NA	NA
WP_002294287.1|109820_110273_-	YueI family protein	NA	NA	NA	NA	NA
WP_002294286.1|110422_111373_+	iron chelate uptake ABC transporter family permease subunit	NA	A0A2H4IY97	uncultured_Caudovirales_phage	40.5	1.6e-66
WP_002301163.1|111365_112325_+	iron chelate uptake ABC transporter family permease subunit	NA	NA	NA	NA	NA
WP_002301162.1|112321_113077_+	ATP-binding cassette domain-containing protein	NA	A0A2R8FG22	Brazilian_cedratvirus	28.1	2.2e-13
WP_002301160.1|113099_114053_+	siderophore ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_002287909.1|114696_114993_-|tRNA	phenylalanyl-tRNA synthetase subunit alpha	tRNA	NA	NA	NA	NA
WP_002287910.1|115348_115705_+	iron-sulfur cluster biosynthesis family protein	NA	NA	NA	NA	NA
WP_002348747.1|115714_116614_+	metallophosphoesterase	NA	NA	NA	NA	NA
WP_010782507.1|116846_117806_-|transposase	IS30 family transposase	transposase	H7BW61	unidentified_phage	26.8	2.2e-10
WP_010782508.1|118063_119509_+|transposase	IS1182-like element ISEfa7 family transposase	transposase	A0A1X9I5T2	Streptococcus_phage	47.8	2.2e-123
WP_002348590.1|119554_120289_-	aquaporin family protein	NA	NA	NA	NA	NA
WP_002301190.1|120614_121025_+	CidA/LrgA family protein	NA	NA	NA	NA	NA
WP_002294273.1|121017_121719_+	LrgB family protein	NA	NA	NA	NA	NA
WP_002348592.1|121718_123332_+	M protein trans-acting positive regulator	NA	NA	NA	NA	NA
WP_002290506.1|123321_123543_+	DUF2829 domain-containing protein	NA	A0A0S2MV93	Bacillus_phage	33.3	1.1e-05
WP_002297929.1|123539_124301_+	3-oxoacyl-ACP reductase	NA	F2NZ40	Diadromus_pulchellus_ascovirus	31.7	1.2e-16
WP_002294268.1|124681_125191_+	QueT transporter family protein	NA	E7DN70	Pneumococcus_phage	31.8	7.5e-10
WP_002294267.1|125260_125800_-	biotin transporter BioY	NA	NA	NA	NA	NA
WP_002294265.1|125939_126551_-	30S ribosomal protein S4	NA	NA	NA	NA	NA
WP_002324284.1|126866_127664_+	formate/nitrite transporter	NA	NA	NA	NA	NA
WP_002294262.1|127691_128327_+	DNA alkylation repair protein	NA	NA	NA	NA	NA
WP_002294261.1|128346_129120_+	Cof-type HAD-IIB family hydrolase	NA	NA	NA	NA	NA
WP_002348595.1|129527_130325_+	TIGR00282 family metallophosphoesterase	NA	NA	NA	NA	NA
WP_002297923.1|130302_130716_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002294258.1|130699_133345_+	DNA mismatch repair protein MutS	NA	A0A1V0SC35	Catovirus	26.1	3.6e-39
WP_002301736.1|133362_135471_+	DNA mismatch repair endonuclease MutL	NA	A0A1B2LRQ5	Wolbachia_phage	41.1	1.8e-57
WP_002348596.1|135492_136053_+	septum formation inhibitor Maf	NA	NA	NA	NA	NA
WP_002297218.1|136191_137487_-|transposase	ISL3-like element ISEfa11 family transposase	transposase	A0A2D1GQC1	Lysinibacillus_phage	20.9	2.1e-08
WP_002285758.1|137746_137941_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002287659.1|137930_138284_+	IS66 family insertion sequence element accessory protein TnpB	NA	NA	NA	NA	NA
WP_002303202.1|138385_139933_+|transposase	IS66 family transposase	transposase	NA	NA	NA	NA
WP_002348864.1|140012_142001_-	PTS system trehalose-specific EIIBC component	NA	NA	NA	NA	NA
WP_002294254.1|142223_142937_+	trehalose operon repressor	NA	A0A291LID1	Streptomyces_phage	39.7	1.2e-05
WP_002294252.1|143013_143460_+	peptide-methionine (R)-S-oxide reductase MsrB	NA	NA	NA	NA	NA
WP_002290528.1|143629_144232_+	Holliday junction branch migration protein RuvA	NA	NA	NA	NA	NA
WP_002289812.1|144244_145246_+	Holliday junction branch migration DNA helicase RuvB	NA	A0A127AWE7	Bacillus_phage	25.8	2.3e-07
WP_002341570.1|145274_145853_+	TetR family transcriptional regulator	NA	NA	NA	NA	NA
WP_002294249.1|145904_146387_+	low molecular weight phosphotyrosine protein phosphatase	NA	NA	NA	NA	NA
WP_002289815.1|146503_146878_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002294246.1|147677_149030_-	branched-chain amino acid transport system II carrier protein	NA	NA	NA	NA	NA
WP_002297079.1|149176_149767_+	DUF1211 domain-containing protein	NA	NA	NA	NA	NA
WP_002294242.1|149894_151244_-	amino acid permease	NA	NA	NA	NA	NA
WP_002294240.1|151411_152152_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	39.7	5.5e-30
WP_002297081.1|152164_153757_-	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_002293448.1|154324_154621_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002294236.1|154796_155522_+	NAD-dependent protein deacylase	NA	NA	NA	NA	NA
WP_002301156.1|155514_156357_+	chorismate mutase	NA	NA	NA	NA	NA
WP_002294232.1|156359_156881_+	transcription repressor NadR	NA	NA	NA	NA	NA
WP_002289284.1|157133_157697_-	peptide deformylase	NA	E3SLL2	Synechococcus_phage	37.1	2.3e-12
WP_002289282.1|157947_158217_+	30S ribosomal protein S15	NA	NA	NA	NA	NA
WP_002297086.1|158404_160531_+	polyribonucleotide nucleotidyltransferase	NA	NA	NA	NA	NA
WP_002289280.1|161040_161307_+	GlsB/YeaQ/YmgE family stress response membrane protein	NA	NA	NA	NA	NA
WP_002289279.1|161450_163442_+	potassium transporter Kup	NA	M1HZV6	Acanthocystis_turfacea_Chlorella_virus	33.9	8.4e-65
WP_002294228.1|163795_165097_+	HlyC/CorC family transporter	NA	NA	NA	NA	NA
WP_002326809.1|165472_166768_-|transposase	ISL3-like element ISEfa5 family transposase	transposase	A0A2D1GQC1	Lysinibacillus_phage	21.4	5.0e-10
WP_010782510.1|166835_168014_-|transposase	IS110 family transposase	transposase	A0A1X9I5Z0	Streptococcus_phage	39.9	3.8e-65
WP_002289277.1|168360_169731_-	MATE family efflux transporter	NA	NA	NA	NA	NA
WP_002289744.1|169912_170236_-	DUF960 domain-containing protein	NA	NA	NA	NA	NA
WP_002299254.1|170560_171169_-	50S ribosomal protein L25/general stress protein Ctc	NA	NA	NA	NA	NA
WP_002348768.1|171498_172215_+	pseudouridine synthase	NA	NA	NA	NA	NA
WP_002289749.1|172227_172923_+	noncanonical pyrimidine nucleotidase, YjjG family	NA	NA	NA	NA	NA
WP_002289751.1|173006_173636_+	uridine kinase	NA	A0A1V0SAA3	Catovirus	40.2	3.1e-34
WP_086953915.1|174150_175489_+|transposase	IS3-like element ISEnfa3 family transposase	transposase	A0A1B1P773	Bacillus_phage	52.7	2.6e-78
WP_002294220.1|175558_176161_+	TVP38/TMEM64 family protein	NA	M1Q152	Streptococcus_phage	30.6	3.6e-19
WP_002296548.1|176182_176671_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_002294217.1|176991_178365_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002294214.1|178348_178816_+	YaiI/YqxD family protein	NA	NA	NA	NA	NA
WP_002329999.1|179064_180810_-	AarF/ABC1/UbiB kinase family protein	NA	M4R0M8	Ostreococcus_lucimarinus_virus	28.1	1.3e-40
WP_002293424.1|181005_182082_+	D-alanine--D-alanine ligase	NA	NA	NA	NA	NA
WP_002317074.1|182234_183587_+	UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase	NA	NA	NA	NA	NA
WP_086272912.1|183902_185420_+	DEAD/DEAH box helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	36.2	1.3e-62
WP_002294209.1|185549_185900_+	holo-ACP synthase	NA	NA	NA	NA	NA
WP_002294207.1|185915_187037_+	alanine racemase	NA	NA	NA	NA	NA
WP_002289874.1|187047_187410_+	type II toxin-antitoxin system PemK/MazF family toxin	NA	A0A291I9M9	Lactobacillus_phage	37.8	7.6e-09
WP_002293413.1|187585_187855_-	30S ribosomal protein S14	NA	NA	NA	NA	NA
WP_002294206.1|188044_188992_+	NADP-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_016171130.1|189137_190433_-|transposase	ISL3-like element ISEfa5 family transposase	transposase	A0A2D1GQC1	Lysinibacillus_phage	21.2	1.1e-09
WP_002301399.1|190699_191659_+|transposase	IS30 family transposase	transposase	H7BW61	unidentified_phage	26.8	2.2e-10
WP_002294203.1|191884_194590_+	YhgE/Pip domain-containing protein	NA	NA	NA	NA	NA
WP_002294202.1|195186_197010_+	APC family permease	NA	NA	NA	NA	NA
WP_002348885.1|197151_197337_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002294199.1|197811_198075_+	type II toxin-antitoxin system Phd/YefM family antitoxin	NA	NA	NA	NA	NA
WP_002301121.1|198074_198341_+	Txe/YoeB family addiction module toxin	NA	NA	NA	NA	NA
WP_002301116.1|199571_200243_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_002301114.1|200239_201157_-	osmoprotectant ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_002293405.1|201153_201795_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_002348889.1|201798_202974_-|holin	betaine/proline/choline family ABC transporter ATP-binding protein	holin	Q6GZ03	Mycoplasma_phage	32.9	1.0e-17
WP_002350806.1|203166_204198_+|tRNA	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	tRNA	NA	NA	NA	NA
WP_002341590.1|205874_206828_+|transposase	IS30 family transposase	transposase	NA	NA	NA	NA
WP_002319878.1|206918_208214_+|transposase	ISL3 family transposase	transposase	A0A1S5SBP9	Streptococcus_phage	37.2	1.5e-54
WP_002326809.1|208375_209671_+|transposase	ISL3-like element ISEfa5 family transposase	transposase	A0A2D1GQC1	Lysinibacillus_phage	21.4	5.0e-10
WP_002289743.1|210380_213020_+	cation-translocating P-type ATPase	NA	A0A1J0FA34	Only_Syngen_Nebraska_virus	31.2	1.6e-84
WP_002294185.1|213187_213886_-	DUF975 family protein	NA	NA	NA	NA	NA
WP_002341590.1|213988_214942_-|transposase	IS30 family transposase	transposase	NA	NA	NA	NA
WP_002294183.1|215170_216316_+|tRNA	tRNA guanosine(34) transglycosylase Tgt	tRNA	A0A1B1IVQ4	uncultured_Mediterranean_phage	40.9	2.5e-82
WP_002300794.1|216412_216793_+	preprotein translocase subunit YajC	NA	NA	NA	NA	NA
WP_010782512.1|217097_219695_+	bifunctional acetaldehyde-CoA/alcohol dehydrogenase	NA	NA	NA	NA	NA
WP_010782513.1|219602_221213_-|transposase	IS1182 family transposase	transposase	A0A1X9I5T2	Streptococcus_phage	48.0	8.4e-124
WP_002300788.1|223490_223970_+	TRAP transporter small permease	NA	NA	NA	NA	NA
WP_086953915.1|224595_225934_+|transposase	IS3-like element ISEnfa3 family transposase	transposase	A0A1B1P773	Bacillus_phage	52.7	2.6e-78
>prophage 2
NZ_CP011281	Enterococcus faecium strain E39, complete genome	2790106	257279	265016	2790106		Streptococcus_phage(66.67%)	6	NA	NA
WP_002297361.1|257279_259139_+	group II intron reverse transcriptase/maturase	NA	A0A0U4J920	Pseudomonas_phage	26.0	2.8e-30
WP_000398284.1|259695_260901_+	XRE family transcriptional regulator	NA	A0A1S5SEX3	Streptococcus_phage	100.0	2.8e-233
WP_002286940.1|261684_263595_+	group II intron reverse transcriptase/maturase	NA	A0A0U4J920	Pseudomonas_phage	29.8	7.1e-37
WP_032509114.1|263698_263923_+	hypothetical protein	NA	A0A1S5SEY0	Streptococcus_phage	97.1	8.5e-27
WP_002345010.1|264039_264537_+	antirestriction protein ArdA	NA	A0A1S5SF25	Streptococcus_phage	97.6	1.3e-88
WP_002345009.1|264623_265016_+	conjugal transfer protein	NA	A0A1S5SEX7	Streptococcus_phage	99.2	4.6e-68
>prophage 3
NZ_CP011281	Enterococcus faecium strain E39, complete genome	2790106	748499	756971	2790106		Streptococcus_phage(66.67%)	9	NA	NA
WP_002294039.1|748499_749144_+	dTMP kinase	NA	M1PSC7	Streptococcus_phage	52.6	4.2e-58
WP_002292340.1|749158_749488_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002288071.1|749501_750440_+	DNA polymerase III subunit delta'	NA	M1NSC1	Streptococcus_phage	34.4	3.3e-35
WP_002288073.1|750475_751300_+	stage 0 sporulation family protein	NA	NA	NA	NA	NA
WP_002288076.1|751292_751640_+	DNA replication initiation control protein YabA	NA	M1PFV3	Streptococcus_phage	41.1	5.1e-18
WP_002288078.1|751708_752581_+	16S rRNA (cytidine(1402)-2'-O)-methyltransferase	NA	M1PLC5	Streptococcus_phage	60.4	3.1e-88
WP_002294035.1|752689_753811_+	DNA polymerase IV	NA	NA	NA	NA	NA
WP_002288081.1|753864_754467_-	anaerobic ribonucleoside-triphosphate reductase activating protein	NA	A0A288TZV3	Enterococcus_phage	58.6	1.7e-53
WP_002288083.1|754781_756971_-	anaerobic ribonucleoside-triphosphate reductase	NA	A0A0C5KKX3	Enterococcus_phage	66.6	1.8e-286
>prophage 4
NZ_CP011281	Enterococcus faecium strain E39, complete genome	2790106	811488	886913	2790106	tRNA,protease,head,holin,terminase,integrase,transposase,tail,portal,capsid	Enterococcus_phage(25.64%)	91	867050:867065	870403:870418
WP_002286621.1|811488_814287_+|tRNA	isoleucine--tRNA ligase	tRNA	A0A2H4UVG0	Bodo_saltans_virus	26.4	1.6e-74
WP_002286618.1|814335_815862_-	glucose-6-phosphate dehydrogenase	NA	H6WFS4	Cyanophage	35.3	8.9e-75
WP_002286616.1|815876_816524_-	metal-dependent transcriptional regulator	NA	NA	NA	NA	NA
WP_002286678.1|816707_817037_-	DUF4828 domain-containing protein	NA	NA	NA	NA	NA
WP_002286614.1|817213_817942_+	DNA/RNA nuclease SfsA	NA	NA	NA	NA	NA
WP_002286612.1|817957_818971_+	Gfo/Idh/MocA family oxidoreductase	NA	NA	NA	NA	NA
WP_002286608.1|818970_820248_+	DEAD/DEAH box helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	28.8	5.8e-35
WP_002286607.1|820310_823013_+	sigma-54-dependent transcriptional regulator	NA	NA	NA	NA	NA
WP_002286606.1|823164_823482_+	PTS sugar transporter subunit IIB	NA	NA	NA	NA	NA
WP_002286604.1|823511_823832_+	PTS lactose/cellobiose transporter subunit IIA	NA	NA	NA	NA	NA
WP_002286601.1|823917_825378_+	PTS sugar transporter subunit IIC	NA	NA	NA	NA	NA
WP_002286598.1|825445_825667_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002286596.1|825697_825880_+	DUF3188 domain-containing protein	NA	NA	NA	NA	NA
WP_002286592.1|825879_826293_+	DUF3284 domain-containing protein	NA	NA	NA	NA	NA
WP_002286589.1|826415_827597_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_002286587.1|828127_829267_-|integrase	site-specific integrase	integrase	Q9AZR0	Lactococcus_phage	47.1	2.6e-95
WP_002296617.1|829565_830201_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002296616.1|830313_830949_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002303013.1|830982_831444_-	DUF4429 domain-containing protein	NA	A0A0F6N4L7	Staphylococcus_phage	34.8	4.5e-06
WP_002348715.1|831573_832005_-	ImmA/IrrE family metallo-endopeptidase	NA	NA	NA	NA	NA
WP_002296612.1|832022_832343_-	helix-turn-helix transcriptional regulator	NA	A0A1S5SDR1	Streptococcus_phage	40.2	2.0e-13
WP_002290310.1|832641_833418_+	phage antirepressor protein	NA	A0A1Q1PVU2	Staphylococcus_phage	53.8	1.1e-73
WP_002296611.1|833432_833636_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_002286573.1|833651_833990_+	DUF771 domain-containing protein	NA	NA	NA	NA	NA
WP_002296610.1|833976_834156_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002286568.1|834198_834669_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002286562.1|834755_835454_+	phage regulatory protein	NA	D2IYT0	Enterococcus_phage	34.6	1.7e-25
WP_002286559.1|835631_835973_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002286557.1|835965_836637_+	DUF1071 domain-containing protein	NA	A0A1B1P7F0	Bacillus_phage	47.4	4.2e-29
WP_002286553.1|836642_837329_+	hypothetical protein	NA	C9E2N1	Enterococcus_phage	69.1	3.2e-88
WP_002286552.1|837331_838081_+	helix-turn-helix domain-containing protein	NA	A0A1L2BY83	Clostridium_phage	54.0	1.7e-31
WP_002286696.1|838092_838362_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002286695.1|838523_838826_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002296606.1|838822_838984_+	antitoxin	NA	NA	NA	NA	NA
WP_002286694.1|838980_839286_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002286550.1|839285_839642_+	DUF1140 family protein	NA	A0A2H4JAZ4	uncultured_Caudovirales_phage	37.4	3.1e-10
WP_002296604.1|839601_839847_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002286547.1|839843_840263_+	hypothetical protein	NA	D2IZL0	Enterococcus_phage	54.3	4.1e-30
WP_002286545.1|840259_840817_+	DUF1642 domain-containing protein	NA	A0A0C5KKV2	Enterococcus_phage	36.2	2.8e-10
WP_002286693.1|840813_841110_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002286542.1|841186_841600_+	autolysin	NA	C9E2P5	Enterococcus_phage	81.0	1.5e-56
WP_002300143.1|842057_842333_-	hypothetical protein	NA	A0A2H4JEH2	uncultured_Caudovirales_phage	45.7	9.9e-17
WP_002311723.1|842786_842993_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002296600.1|843188_843356_+	thymidylate synthase	NA	NA	NA	NA	NA
WP_002286540.1|843381_843726_+	HNH endonuclease	NA	A0A1B1P757	Bacillus_phage	57.1	3.8e-26
WP_002296599.1|843730_844012_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002286538.1|844114_844429_+|terminase	terminase	terminase	A0A1S7FYW6	Listeria_phage	37.9	3.3e-08
WP_002286533.1|844406_846101_+|terminase	terminase large subunit	terminase	A0A1B1P766	Bacillus_phage	49.6	3.0e-148
WP_002286530.1|846120_847299_+|portal	phage portal protein	portal	A0A1B1P754	Bacillus_phage	40.4	5.4e-80
WP_002286527.1|847261_847948_+|protease	Clp protease ClpP	protease	A0A2I6PDD0	Staphylococcus_phage	39.7	1.0e-30
WP_002286525.1|847947_849108_+|capsid	phage major capsid protein	capsid	A0A1B1P752	Bacillus_phage	50.1	1.8e-99
WP_002286524.1|849117_849993_+	hypothetical protein	NA	D2IYX3	Enterococcus_phage	74.2	5.6e-130
WP_002286523.1|849989_850301_+	hypothetical protein	NA	A0A1B1P751	Bacillus_phage	42.1	6.3e-12
WP_002286522.1|850290_850644_+|head	phage head closure protein	head	NA	NA	NA	NA
WP_002296598.1|850633_851035_+	hypothetical protein	NA	A0A1B1P759	Bacillus_phage	33.3	1.1e-13
WP_002286516.1|851027_851432_+	hypothetical protein	NA	R4IBU7	Listeria_phage	29.5	6.1e-07
WP_002286512.1|851443_852052_+	hypothetical protein	NA	Q8W5Z9	Listeria_phage	41.1	3.0e-34
WP_002286510.1|852071_852434_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002305377.1|852436_852619_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002348716.1|852635_856067_+|tail	phage tail tape measure protein	tail	A0A1D3SNL5	Enterococcus_phage	44.4	3.1e-67
WP_002286500.1|856117_856855_+|tail	phage tail protein	tail	NA	NA	NA	NA
WP_002286497.1|856864_859156_+	hypothetical protein	NA	A0A1D3SNL1	Enterococcus_phage	30.0	9.6e-89
WP_002286495.1|859179_861306_+	hypothetical protein	NA	A0A060AI60	Enterococcus_phage	40.1	1.4e-62
WP_002286491.1|861468_861915_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002296594.1|861916_862054_+	XkdX family protein	NA	NA	NA	NA	NA
WP_002286686.1|862091_862385_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002286683.1|862381_862606_+|holin	holin	holin	NA	NA	NA	NA
WP_002349643.1|862602_863628_+	N-acetylmuramoyl-L-alanine amidase	NA	A0A139ZVY1	Enterococcus_phage	61.3	2.8e-64
WP_087046766.1|864567_865729_+|transposase	IS3 family transposase	transposase	A0A2I7SC85	Paenibacillus_phage	54.2	4.1e-80
WP_002286474.1|866652_867060_+	hypothetical protein	NA	NA	NA	NA	NA
867050:867065	attL	AAAAAAATTAAGGAGA	NA	NA	NA	NA
WP_002296902.1|867073_867475_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002286473.1|867476_867848_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002286680.1|867883_868186_-	hypothetical protein	NA	NA	NA	NA	NA
WP_076005172.1|868434_868635_-|integrase	tyrosine-type recombinase/integrase	integrase	Q9AZR0	Lactococcus_phage	75.7	4.6e-08
WP_002348827.1|868939_870172_-	aminopeptidase	NA	NA	NA	NA	NA
WP_002286467.1|870428_870998_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
870403:870418	attR	AAAAAAATTAAGGAGA	NA	NA	NA	NA
WP_002297963.1|871175_871616_-	flavodoxin	NA	NA	NA	NA	NA
WP_002294533.1|871773_872538_+	type I methionyl aminopeptidase	NA	NA	NA	NA	NA
WP_002286461.1|872569_873493_+	YihY/virulence factor BrkB family protein	NA	NA	NA	NA	NA
WP_002286457.1|873568_874708_+	undecaprenyl/decaprenyl-phosphate alpha-N-acetylglucosaminyl 1-phosphate transferase	NA	NA	NA	NA	NA
WP_002286455.1|874700_875501_+	glycosyltransferase	NA	NA	NA	NA	NA
WP_002286453.1|875500_876328_+	glycosyltransferase	NA	NA	NA	NA	NA
WP_002321540.1|876305_877040_+	glycosyltransferase family 2 protein	NA	NA	NA	NA	NA
WP_002286449.1|877139_878006_+	glucose-1-phosphate thymidylyltransferase RfbA	NA	I7I009	Enterobacteria_phage	62.5	3.7e-102
WP_002286442.1|878019_878592_+	dTDP-4-dehydrorhamnose 3,5-epimerase	NA	A0A291LA62	Escherichia_phage	49.2	8.3e-42
WP_002294532.1|878613_879642_+	dTDP-glucose 4,6-dehydratase	NA	A0A1D7XFE8	Escherichia_phage	42.9	6.4e-69
WP_002286428.1|879739_880591_+	dTDP-4-dehydrorhamnose reductase	NA	A0A291LA50	Escherichia_phage	39.0	1.7e-38
WP_002348826.1|880624_882658_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002348825.1|882701_883982_+	EpaQ family protein	NA	NA	NA	NA	NA
WP_002297185.1|884078_885374_-|transposase	ISL3-like element ISEfa5 family transposase	transposase	A0A2D1GQC1	Lysinibacillus_phage	21.4	3.8e-10
WP_010782578.1|885638_886913_-|transposase	ISL3-like element IS1476 family transposase	transposase	A0A1S5SBP9	Streptococcus_phage	36.1	8.6e-55
>prophage 5
NZ_CP011281	Enterococcus faecium strain E39, complete genome	2790106	1058676	1114848	2790106	protease,transposase,tRNA	Lysinibacillus_phage(20.0%)	54	NA	NA
WP_000122610.1|1058676_1059969_-|transposase	ISL3 family transposase	transposase	A0A1S5SBP9	Streptococcus_phage	38.9	3.2e-57
WP_002297218.1|1060248_1061544_-|transposase	ISL3-like element ISEfa11 family transposase	transposase	A0A2D1GQC1	Lysinibacillus_phage	20.9	2.1e-08
WP_002321398.1|1061779_1063879_+	TFIIB-type zinc ribbon-containing protein	NA	NA	NA	NA	NA
WP_002290060.1|1064074_1064938_+	S1 RNA-binding protein	NA	NA	NA	NA	NA
WP_002322512.1|1065042_1065516_+	transcriptional repressor	NA	NA	NA	NA	NA
WP_002297218.1|1065582_1066878_-|transposase	ISL3-like element ISEfa11 family transposase	transposase	A0A2D1GQC1	Lysinibacillus_phage	20.9	2.1e-08
WP_002294386.1|1067133_1068021_+	site-specific tyrosine recombinase XerD	NA	A0A0K2CP59	Brevibacillus_phage	29.7	1.2e-31
WP_002294387.1|1068039_1068411_+	protein RibT	NA	NA	NA	NA	NA
WP_002305297.1|1068380_1069178_+	segregation/condensation protein A	NA	A0A1B1IVW1	uncultured_Mediterranean_phage	25.0	6.4e-08
WP_002296975.1|1069161_1069731_+	SMC-Scp complex subunit ScpB	NA	A0A1B1IVT7	uncultured_Mediterranean_phage	32.7	1.5e-14
WP_002294391.1|1069736_1070453_+	rRNA pseudouridine synthase	NA	NA	NA	NA	NA
WP_002296977.1|1070782_1071394_+	ECF transporter S component	NA	NA	NA	NA	NA
WP_002290168.1|1071771_1073295_+	YfcC family protein	NA	NA	NA	NA	NA
WP_002294399.1|1073531_1074872_+	Sapep family Mn(2+)-dependent dipeptidase	NA	NA	NA	NA	NA
WP_002294400.1|1075024_1075762_+	thioesterase	NA	NA	NA	NA	NA
WP_002294401.1|1075926_1076148_-	ferredoxin	NA	NA	NA	NA	NA
WP_002305295.1|1076178_1077210_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002303122.1|1077196_1078600_+	ATP-dependent DNA helicase RecQ	NA	A0A0G2Y8K9	Acanthamoeba_polyphaga_mimivirus	35.4	6.5e-64
WP_002294404.1|1078665_1079301_+	LysM peptidoglycan-binding domain-containing protein	NA	NA	NA	NA	NA
WP_002303123.1|1079349_1080030_+	(d)CMP kinase	NA	NA	NA	NA	NA
WP_002294406.1|1080164_1081394_+	30S ribosomal protein S1	NA	NA	NA	NA	NA
WP_002296982.1|1081575_1082886_+	ribosome biogenesis GTPase Der	NA	NA	NA	NA	NA
WP_002290178.1|1083128_1083404_+	HU family DNA-binding protein	NA	A0A0H3UZA0	Geobacillus_virus	69.7	1.8e-26
WP_002297185.1|1083629_1084925_-|transposase	ISL3-like element ISEfa5 family transposase	transposase	A0A2D1GQC1	Lysinibacillus_phage	21.4	3.8e-10
WP_002294410.1|1085160_1086207_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002289879.1|1086208_1087468_+	tetratricopeptide repeat protein	NA	NA	NA	NA	NA
WP_002289878.1|1087473_1088055_+	IDEAL domain-containing protein	NA	NA	NA	NA	NA
WP_002294412.1|1088136_1089012_-	YitT family protein	NA	M1Q1P6	Streptococcus_phage	45.3	5.9e-63
WP_002290045.1|1089159_1089492_+	nucleotide pyrophosphohydrolase	NA	NA	NA	NA	NA
WP_002294414.1|1089603_1090812_+|tRNA	CCA tRNA nucleotidyltransferase	tRNA	H7BUW3	unidentified_phage	51.7	1.5e-45
WP_002290187.1|1090965_1091421_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002297185.1|1091614_1092910_-|transposase	ISL3-like element ISEfa5 family transposase	transposase	A0A2D1GQC1	Lysinibacillus_phage	21.4	3.8e-10
WP_002290188.1|1093304_1093580_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002288388.1|1093592_1095671_+	sodium:proton antiporter	NA	NA	NA	NA	NA
WP_002288390.1|1095830_1097717_+	ABC-F family ATP-binding cassette domain-containing protein	NA	A0A2K9L3Z8	Tupanvirus	29.8	2.6e-52
WP_002294416.1|1097728_1098676_+	thymidylate synthase	NA	A0A0N9SH48	Staphylococcus_phage	64.6	7.1e-123
WP_002288392.1|1098695_1099223_+	dihydrofolate reductase	NA	A0A1D6X864	Bacillus_phage	37.1	6.7e-22
WP_002288393.1|1099285_1099939_-	hemolysin III family protein	NA	NA	NA	NA	NA
WP_002288394.1|1100070_1100913_+	DegV family protein	NA	A0A0N9SI50	Staphylococcus_phage	40.2	6.5e-19
WP_002288395.1|1101070_1101967_+	SGNH/GDSL hydrolase family protein	NA	NA	NA	NA	NA
WP_002288396.1|1101969_1102683_+	YpmS family protein	NA	NA	NA	NA	NA
WP_002288397.1|1102702_1103221_+	peptide-methionine (S)-S-oxide reductase MsrA	NA	NA	NA	NA	NA
WP_002288398.1|1103217_1103445_+	YozE family protein	NA	NA	NA	NA	NA
WP_002294418.1|1103596_1104148_+	signal peptidase I	NA	NA	NA	NA	NA
WP_002288403.1|1104230_1104773_-	folate family ECF transporter S component	NA	NA	NA	NA	NA
WP_002288405.1|1105009_1105408_-	glyoxalase	NA	NA	NA	NA	NA
WP_002296988.1|1105667_1106528_+	ribosome biogenesis GTPase YlqF	NA	NA	NA	NA	NA
WP_002296990.1|1106520_1107288_+	ribonuclease HII	NA	D2TEQ2	Emiliania_huxleyi_virus	39.5	2.7e-27
WP_002303743.1|1107343_1108201_+	DNA-protecting protein DprA	NA	NA	NA	NA	NA
WP_002288411.1|1108322_1110401_+	type I DNA topoisomerase	NA	A0A167R9A0	Powai_lake_megavirus	38.5	1.2e-101
WP_002320953.1|1110369_1111746_+|tRNA	FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO	tRNA	NA	NA	NA	NA
WP_002288415.1|1111943_1112849_+	tyrosine recombinase XerC	NA	A0A0K2CP59	Brevibacillus_phage	29.4	9.4e-32
WP_002288419.1|1112885_1113434_+	HslU--HslV peptidase proteolytic subunit	NA	NA	NA	NA	NA
WP_002288421.1|1113447_1114848_+|protease	ATP-dependent protease ATPase subunit HslU	protease	A0A173GFL6	Erwinia_phage	28.8	1.7e-43
>prophage 6
NZ_CP011281	Enterococcus faecium strain E39, complete genome	2790106	1178137	1187198	2790106		Gordonia_phage(16.67%)	9	NA	NA
WP_002288023.1|1178137_1179433_+	adenylosuccinate lyase	NA	A0A1B3B081	Gordonia_phage	33.1	4.5e-19
WP_002297115.1|1179612_1179990_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002288021.1|1180245_1180974_+	phosphoribosylaminoimidazolesuccinocarboxamide synthase	NA	E3SPA9	Prochlorococcus_phage	41.4	4.6e-45
WP_002295474.1|1180973_1181228_+	phosphoribosylformylglycinamidine synthase subunit PurS	NA	NA	NA	NA	NA
WP_002288017.1|1181229_1181901_+	phosphoribosylformylglycinamidine synthase subunit PurQ	NA	NA	NA	NA	NA
WP_002288015.1|1181901_1184124_+	phosphoribosylformylglycinamidine synthase subunit PurL	NA	A6N228	Microbacterium_phage	41.3	1.9e-150
WP_002288013.1|1184108_1185548_+	amidophosphoribosyltransferase	NA	A0A0M3SGR2	Mollivirus	33.1	5.3e-53
WP_002321731.1|1185579_1186623_+	phosphoribosylformylglycinamidine cyclo-ligase	NA	A0A1D7SE90	Cyanophage	43.7	2.7e-62
WP_002288010.1|1186619_1187198_+	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	37.4	1.3e-26
>prophage 7
NZ_CP011281	Enterococcus faecium strain E39, complete genome	2790106	1460303	1510382	2790106	transposase,protease	Streptococcus_phage(23.08%)	57	NA	NA
WP_002297185.1|1460303_1461599_+|transposase	ISL3-like element ISEfa5 family transposase	transposase	A0A2D1GQC1	Lysinibacillus_phage	21.4	3.8e-10
WP_002303421.1|1461994_1462525_-	dihydrofolate reductase	NA	NA	NA	NA	NA
WP_002303420.1|1462706_1463363_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002303419.1|1463489_1463963_-	trimethoprim-resistant dihydrofolate reductase DfrF	NA	F8SJN4	Pseudomonas_phage	45.1	3.0e-21
WP_002296683.1|1464630_1465845_-	ammonium transporter	NA	NA	NA	NA	NA
WP_002290686.1|1466185_1466428_-	GlsB/YeaQ/YmgE family stress response membrane protein	NA	NA	NA	NA	NA
WP_002295944.1|1466459_1467017_-	Asp23/Gls24 family envelope stress response protein	NA	NA	NA	NA	NA
WP_002295945.1|1467029_1467218_-	DUF2273 domain-containing protein	NA	NA	NA	NA	NA
WP_002295947.1|1467230_1467797_-	alkaline shock response membrane anchor protein AmaP	NA	NA	NA	NA	NA
WP_002295138.1|1469026_1469500_+	DUF2975 domain-containing protein	NA	NA	NA	NA	NA
WP_002295139.1|1469508_1469736_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_002324322.1|1470309_1471488_+|transposase	IS256-like element ISEfm2 family transposase	transposase	NA	NA	NA	NA
WP_063526624.1|1471526_1473038_-|transposase	IS1182-like element ISEfa7 family transposase	transposase	A0A1X9I5T2	Streptococcus_phage	47.8	1.3e-123
WP_002295142.1|1473261_1473633_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002291278.1|1473888_1474131_-	GlsB/YeaQ/YmgE family stress response membrane protein	NA	NA	NA	NA	NA
WP_002296679.1|1474162_1475065_-	Asp23/Gls24 family envelope stress response protein	NA	NA	NA	NA	NA
WP_002291274.1|1475077_1475266_-	DUF2273 domain-containing protein	NA	NA	NA	NA	NA
WP_002296677.1|1475279_1475843_-	alkaline shock response membrane anchor protein AmaP	NA	NA	NA	NA	NA
WP_002300977.1|1475880_1476774_-	SDR family oxidoreductase	NA	A0A2N9QUX2	Trichoplusia_ni_ascovirus	46.0	5.2e-59
WP_002296674.1|1476851_1477790_-	magnesium transporter CorA family protein	NA	NA	NA	NA	NA
WP_002296672.1|1477823_1478174_-	iron-sulfur cluster biosynthesis family protein	NA	NA	NA	NA	NA
WP_002296671.1|1478206_1479109_-	glycosyltransferase family 8 protein	NA	NA	NA	NA	NA
WP_002296670.1|1479101_1479959_-	glycosyltransferase family 8 protein	NA	A0ZYL4	Archaeal_BJ1_virus	27.1	1.3e-19
WP_002348903.1|1480292_1481102_+	Cof-type HAD-IIB family hydrolase	NA	NA	NA	NA	NA
WP_002296667.1|1481141_1481639_+	cysteine hydrolase	NA	NA	NA	NA	NA
WP_002321681.1|1482283_1482607_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002296665.1|1482770_1483025_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002296663.1|1483094_1483340_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_002348902.1|1483436_1483781_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002293303.1|1484971_1485172_-	cold-shock protein	NA	Q9AZD3	Lactococcus_phage	77.3	3.9e-23
WP_002302440.1|1485794_1487096_-|transposase	ISL3 family transposase	transposase	A0A1S5SBP9	Streptococcus_phage	33.6	1.6e-48
WP_002296656.1|1487424_1488138_-	HAD family phosphatase	NA	A0A1D8KPI1	Synechococcus_phage	23.0	5.4e-06
WP_002296654.1|1488130_1489216_-	mannonate dehydratase	NA	NA	NA	NA	NA
WP_002296653.1|1489232_1489676_-	PTS fructose transporter subunit IIA	NA	NA	NA	NA	NA
WP_002321678.1|1489709_1490063_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002296650.1|1490174_1490576_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002296648.1|1490612_1491122_-	PTS sugar transporter subunit IIB	NA	NA	NA	NA	NA
WP_002303107.1|1491143_1492001_-	PTS system mannose/fructose/sorbose family transporter subunit IID	NA	NA	NA	NA	NA
WP_002296646.1|1492018_1492852_-	PTS sugar transporter subunit IIC	NA	NA	NA	NA	NA
WP_002303106.1|1492865_1493663_-	iron-containing alcohol dehydrogenase family protein	NA	NA	NA	NA	NA
WP_002321677.1|1493695_1493980_-	alcohol dehydrogenase	NA	NA	NA	NA	NA
WP_002296641.1|1493976_1494978_-	2-hydroxyacid dehydrogenase	NA	M1H9J0	Paramecium_bursaria_Chlorella_virus	29.0	2.8e-24
WP_002296640.1|1494979_1495882_-	decarboxylating 6-phosphogluconate dehydrogenase	NA	A0A1D8KGX1	Synechococcus_phage	35.3	3.3e-53
WP_002296639.1|1496045_1496894_+	MurR/RpiR family transcriptional regulator	NA	NA	NA	NA	NA
WP_002296638.1|1497539_1497746_+	DUF3955 domain-containing protein	NA	NA	NA	NA	NA
WP_002296637.1|1497947_1498949_-	alpha/beta hydrolase	NA	M1PGN2	Moumouvirus	31.8	2.5e-09
WP_002311095.1|1498953_1500867_-	prolyl oligopeptidase family serine peptidase	NA	NA	NA	NA	NA
WP_002296634.1|1501034_1501541_-	cysteine hydrolase	NA	NA	NA	NA	NA
WP_002296633.1|1501700_1502141_+	Spx/MgsR family RNA polymerase-binding regulatory protein	NA	NA	NA	NA	NA
WP_002296632.1|1502166_1503324_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002296631.1|1503326_1503683_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002296629.1|1503980_1504955_-	LPXTG-anchored fibrinogen/nidogen-binding adhesin SgrA	NA	NA	NA	NA	NA
WP_002296628.1|1505150_1505990_-|protease	CPBP family intramembrane metalloprotease	protease	NA	NA	NA	NA
WP_002296627.1|1506174_1507062_+	rotamase	NA	NA	NA	NA	NA
WP_002311093.1|1507645_1508341_-	fructose-6-phosphate aldolase	NA	E3SKN5	Synechococcus_phage	31.5	1.0e-22
WP_002296624.1|1508324_1508723_-	PTS glucitol/sorbitol transporter subunit IIA	NA	NA	NA	NA	NA
WP_002287107.1|1509131_1510382_+|transposase	IS110 family transposase	transposase	M1NSC9	Streptococcus_phage	63.3	4.0e-113
>prophage 8
NZ_CP011281	Enterococcus faecium strain E39, complete genome	2790106	1660589	1849109	2790106	transposase,tRNA,protease,integrase	Streptococcus_phage(24.49%)	171	1782773:1782788	1835836:1835851
WP_002294137.1|1660589_1662299_-|tRNA	proline--tRNA ligase	tRNA	NA	NA	NA	NA
WP_002294136.1|1662366_1663635_-|protease	RIP metalloprotease RseP	protease	NA	NA	NA	NA
WP_002294135.1|1663795_1664596_-	phosphatidate cytidylyltransferase	NA	NA	NA	NA	NA
WP_002294134.1|1664592_1665405_-	isoprenyl transferase	NA	R9W0U9	Flavobacterium_phage	46.8	2.0e-25
WP_002287107.1|1665813_1667064_+|transposase	IS110 family transposase	transposase	M1NSC9	Streptococcus_phage	63.3	4.0e-113
WP_002293875.1|1667382_1667940_-	ribosome recycling factor	NA	NA	NA	NA	NA
WP_002293877.1|1667942_1668665_-	UMP kinase	NA	NA	NA	NA	NA
WP_002293878.1|1668800_1669682_-	elongation factor Ts	NA	NA	NA	NA	NA
WP_002293880.1|1669780_1670563_-	30S ribosomal protein S2	NA	NA	NA	NA	NA
WP_002293881.1|1670921_1671401_+	ArgR family transcriptional regulator	NA	NA	NA	NA	NA
WP_002326698.1|1671617_1672709_+	2-aminoethylphosphonate--pyruvate transaminase	NA	NA	NA	NA	NA
WP_002326699.1|1672701_1672830_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002288430.1|1672833_1673379_+	phosphonoacetaldehyde hydrolase	NA	NA	NA	NA	NA
WP_002288432.1|1673831_1675523_-|tRNA	arginine--tRNA ligase	tRNA	A0A2I2L3K1	Orpheovirus	32.6	2.9e-74
WP_002288434.1|1675942_1676890_-	carbamate kinase	NA	NA	NA	NA	NA
WP_002288437.1|1677004_1678024_-	ornithine carbamoyltransferase	NA	NA	NA	NA	NA
WP_002288439.1|1678114_1679344_-	arginine deiminase	NA	NA	NA	NA	NA
WP_002288442.1|1679804_1680506_+	Crp/Fnr family transcriptional regulator	NA	NA	NA	NA	NA
WP_002326809.1|1680677_1681973_+|transposase	ISL3-like element ISEfa5 family transposase	transposase	A0A2D1GQC1	Lysinibacillus_phage	21.4	5.0e-10
WP_002301319.1|1682636_1683653_-|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD	tRNA	A0A0R6PI74	Moraxella_phage	41.0	5.4e-60
WP_002288445.1|1683649_1684114_-	ribosomal-protein-alanine N-acetyltransferase	NA	NA	NA	NA	NA
WP_002348676.1|1684120_1684663_-	ribosomal-protein-alanine N-acetyltransferase	NA	NA	NA	NA	NA
WP_002288447.1|1684646_1685471_-|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex dimerization subunit type 1 TsaB	tRNA	NA	NA	NA	NA
WP_002288449.1|1685559_1686540_-	LacI family DNA-binding transcriptional regulator	NA	C6ZCU4	Enterobacteria_phage	28.9	5.8e-19
WP_002288451.1|1686563_1688048_-	UDP-glucose--hexose-1-phosphate uridylyltransferase	NA	NA	NA	NA	NA
WP_002288452.1|1688059_1689049_-	UDP-glucose 4-epimerase GalE	NA	A0A1V0SG19	Hokovirus	36.8	2.1e-48
WP_002288457.1|1689296_1689464_+	DUF3042 family protein	NA	NA	NA	NA	NA
WP_002288458.1|1689525_1691337_-	FAD/NAD(P)-binding protein	NA	NA	NA	NA	NA
WP_002288459.1|1691333_1691699_-	DUF488 family protein	NA	NA	NA	NA	NA
WP_002288461.1|1691861_1692257_-	rhodanese-like domain-containing protein	NA	NA	NA	NA	NA
WP_002288462.1|1692274_1693237_-	ROK family glucokinase	NA	NA	NA	NA	NA
WP_002293902.1|1693236_1693449_-	YqgQ family protein	NA	NA	NA	NA	NA
WP_002289885.1|1693469_1694168_-|protease	rhomboid family intramembrane serine protease	protease	NA	NA	NA	NA
WP_002289886.1|1694187_1694730_-	5-formyltetrahydrofolate cyclo-ligase	NA	NA	NA	NA	NA
WP_002301321.1|1694861_1695866_-	iron ABC transporter permease	NA	NA	NA	NA	NA
WP_002293904.1|1695862_1696852_-	iron ABC transporter permease	NA	NA	NA	NA	NA
WP_002293905.1|1696848_1697655_-	ABC transporter ATP-binding protein	NA	A0A1V0SJ29	Klosneuvirus	32.1	1.0e-13
WP_010782564.1|1697820_1698777_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_002296121.1|1698853_1699372_-	dihydrofolate reductase	NA	G3MBI7	Bacillus_virus	39.1	7.1e-24
WP_002296119.1|1699459_1699609_-	50S ribosomal protein L33	NA	NA	NA	NA	NA
WP_002288531.1|1699836_1700283_+	DUF2188 domain-containing protein	NA	NA	NA	NA	NA
WP_002288533.1|1700477_1702373_-	asparagine synthase (glutamine-hydrolyzing)	NA	F2Y2L7	Organic_Lake_phycodnavirus	26.2	6.0e-20
WP_002303934.1|1702697_1703672_-	choloylglycine hydrolase family protein	NA	M1H001	Paramecium_bursaria_Chlorella_virus	29.7	3.0e-23
WP_002296332.1|1704237_1704804_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_002348678.1|1705059_1706391_+	DUF1576 domain-containing protein	NA	NA	NA	NA	NA
WP_002296335.1|1706356_1706707_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002296337.1|1707218_1707563_-	carboxymuconolactone decarboxylase family protein	NA	NA	NA	NA	NA
WP_002301399.1|1707828_1708788_+|transposase	IS30 family transposase	transposase	H7BW61	unidentified_phage	26.8	2.2e-10
WP_002287776.1|1708977_1709574_+	TVP38/TMEM64 family protein	NA	M1Q152	Streptococcus_phage	41.7	8.7e-34
WP_002287775.1|1709697_1711497_+	glycerophosphoryl diester phosphodiesterase	NA	I6XE30	Staphylococcus_phage	26.5	5.3e-10
WP_002297633.1|1711774_1711987_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002311774.1|1712850_1713810_-|transposase	IS30 family transposase	transposase	H7BW61	unidentified_phage	27.2	7.5e-11
WP_002326704.1|1714022_1714931_+|transposase	IS982-like element ISEfm1 family transposase	transposase	NA	NA	NA	NA
WP_002288573.1|1714979_1715366_+	YxeA family protein	NA	NA	NA	NA	NA
WP_000122610.1|1715669_1716962_+|transposase	ISL3 family transposase	transposase	A0A1S5SBP9	Streptococcus_phage	38.9	3.2e-57
WP_002288574.1|1717180_1718527_-	glucose-6-phosphate isomerase	NA	NA	NA	NA	NA
WP_002288575.1|1718638_1719988_-	NADP-specific glutamate dehydrogenase	NA	NA	NA	NA	NA
WP_002288576.1|1720104_1721358_+	NAD(P)/FAD-dependent oxidoreductase	NA	A0A2H4PQX1	Staphylococcus_phage	55.3	7.7e-24
WP_002288577.1|1721428_1721914_-|tRNA	Cys-tRNA(Pro) deacylase	tRNA	NA	NA	NA	NA
WP_002288579.1|1721936_1722695_-	type I 3-dehydroquinate dehydratase	NA	W6LP76	Streptococcus_phage	36.4	1.9e-25
WP_002288581.1|1722710_1723889_-	class I SAM-dependent rRNA methyltransferase	NA	W6LLI2	Streptococcus_phage	48.9	3.9e-102
WP_002303943.1|1724118_1726239_+	LTA synthase family protein	NA	W6LM83	Streptococcus_phage	58.0	8.2e-220
WP_002296838.1|1726461_1727187_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002288586.1|1727176_1727686_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002288588.1|1727755_1729204_-	HAMP domain-containing histidine kinase	NA	A0A1V0SGX0	Hokovirus	29.3	1.7e-19
WP_002288590.1|1729203_1729920_-	response regulator transcription factor	NA	W8CYM9	Bacillus_phage	35.7	1.0e-33
WP_002288595.1|1729900_1730251_-	SdpI family protein	NA	NA	NA	NA	NA
WP_002288592.1|1730394_1731168_+	Cof-type HAD-IIB family hydrolase	NA	NA	NA	NA	NA
WP_002302293.1|1731924_1732227_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000997695.1|1732665_1733844_+|transposase	IS256-like element ISEf1 family transposase	transposase	NA	NA	NA	NA
WP_002321266.1|1734180_1734420_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002289617.1|1734781_1735042_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002289618.1|1735226_1735724_-	GAF domain-containing protein	NA	NA	NA	NA	NA
WP_002289619.1|1735853_1736564_-	acetolactate decarboxylase	NA	NA	NA	NA	NA
WP_002289620.1|1736576_1738241_-	acetolactate synthase AlsS	NA	NA	NA	NA	NA
WP_002300930.1|1738445_1739108_-	DUF624 domain-containing protein	NA	NA	NA	NA	NA
WP_002303949.1|1739117_1739933_-	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
WP_002288989.1|1740194_1740638_-	LysR family transcriptional regulator substrate-binding protein	NA	NA	NA	NA	NA
WP_002321036.1|1740771_1741110_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_002302962.1|1741097_1741475_-	MerR family transcriptional regulator	NA	NA	NA	NA	NA
WP_002322902.1|1741698_1742892_+	MFS transporter	NA	NA	NA	NA	NA
WP_002288984.1|1743057_1743480_-	HTH domain-containing protein	NA	NA	NA	NA	NA
WP_002303955.1|1744068_1744524_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002288982.1|1744685_1745858_-	class C sortase	NA	NA	NA	NA	NA
WP_002303963.1|1748988_1751316_-	LPXTG cell wall anchor domain-containing protein	NA	NA	NA	NA	NA
WP_002296840.1|1751587_1752775_-|transposase	IS256-like element IS16 family transposase	transposase	A0A0K2CZ57	Paenibacillus_phage	46.3	8.2e-92
WP_002288970.1|1753632_1753926_-	DUF2087 domain-containing protein	NA	NA	NA	NA	NA
WP_002286913.1|1754183_1754531_-	50S ribosomal protein L19	NA	NA	NA	NA	NA
WP_002293717.1|1754666_1755428_-|tRNA	tRNA (guanosine(37)-N1)-methyltransferase TrmD	tRNA	NA	NA	NA	NA
WP_002293716.1|1755417_1755939_-	ribosome maturation factor RimM	NA	NA	NA	NA	NA
WP_002297190.1|1756108_1756900_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002290277.1|1757024_1757276_-	KH domain-containing protein	NA	NA	NA	NA	NA
WP_002290274.1|1757287_1757563_-	30S ribosomal protein S16	NA	NA	NA	NA	NA
WP_002293714.1|1757815_1758370_+	NAD(P)H-dependent oxidoreductase	NA	A0A2P0ZL77	Lactobacillus_phage	29.3	2.3e-12
WP_002297192.1|1758448_1758970_-	dihydrofolate reductase	NA	NA	NA	NA	NA
WP_002293710.1|1758973_1759552_-	DNA-3-methyladenine glycosylase I	NA	NA	NA	NA	NA
WP_002293709.1|1759663_1761082_-	signal recognition particle protein	NA	NA	NA	NA	NA
WP_002293708.1|1761102_1761441_-	putative DNA-binding protein	NA	NA	NA	NA	NA
WP_002297194.1|1761400_1761904_-	DUF523 domain-containing protein	NA	NA	NA	NA	NA
WP_002293705.1|1762034_1762739_+	response regulator transcription factor	NA	W8CYM9	Bacillus_phage	36.2	1.4e-38
WP_002303966.1|1762735_1764472_+	two-component sensor histidine kinase	NA	W8CYF6	Bacillus_phage	34.1	1.2e-27
WP_002297196.1|1764574_1767046_-	cation-translocating P-type ATPase	NA	M1HBF8	Paramecium_bursaria_Chlorella_virus	28.8	7.0e-45
WP_002326707.1|1767318_1768593_+|transposase	ISL3 family transposase	transposase	A0A1S5SBP9	Streptococcus_phage	35.9	9.5e-54
WP_002289807.1|1768879_1769770_-	phosphate ABC transporter substrate-binding protein PstS family protein	NA	NA	NA	NA	NA
WP_002300070.1|1769966_1770449_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002289810.1|1770656_1771022_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002326708.1|1771112_1771430_-	SdpI family protein	NA	NA	NA	NA	NA
WP_002301399.1|1772171_1773131_+|transposase	IS30 family transposase	transposase	H7BW61	unidentified_phage	26.8	2.2e-10
WP_002301623.1|1773253_1774228_-	choloylglycine hydrolase family protein	NA	M1HVK5	Paramecium_bursaria_Chlorella_virus	31.8	7.1e-25
WP_002297404.1|1774637_1775888_+|transposase	IS110 family transposase	transposase	M1NSC9	Streptococcus_phage	63.3	4.0e-113
WP_002295273.1|1776173_1776431_+	hypothetical protein	NA	NA	NA	NA	NA
WP_008266934.1|1776662_1777076_-	DUF4231 domain-containing protein	NA	NA	NA	NA	NA
WP_002326711.1|1777332_1778511_+|transposase	IS256-like element ISEf1 family transposase	transposase	NA	NA	NA	NA
WP_002295743.1|1778671_1779581_-|transposase	IS982-like element ISEfm1 family transposase	transposase	NA	NA	NA	NA
WP_099098442.1|1779882_1781045_-|transposase	IS3-like element ISEfa8 family transposase	transposase	A0A2I7SC85	Paenibacillus_phage	54.2	1.8e-80
WP_099745852.1|1781149_1782488_+|transposase	IS3-like element ISEnfa3 family transposase	transposase	A0A1B1P773	Bacillus_phage	52.7	3.4e-78
WP_002301695.1|1782528_1783221_-	hypothetical protein	NA	Q9MCC6	Lactobacillus_phage	43.4	4.0e-30
1782773:1782788	attL	ATAATGAAAATATACT	NA	NA	NA	NA
WP_002296536.1|1783215_1783482_+|integrase	tyrosine-type recombinase/integrase	integrase	A0A0P0I3D2	Lactobacillus_phage	56.5	1.4e-07
WP_002294835.1|1783657_1784227_-	prevent-host-death protein	NA	NA	NA	NA	NA
WP_002304701.1|1784300_1784624_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002294839.1|1784777_1785590_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002304700.1|1785943_1786792_+	MoxR family ATPase	NA	NA	NA	NA	NA
WP_002304699.1|1786936_1787878_+	DUF58 domain-containing protein	NA	NA	NA	NA	NA
WP_002299539.1|1791672_1793844_-	copper/silver-translocating P-type ATPase CopB	NA	A0A218MNH6	uncultured_virus	32.3	5.0e-71
WP_002312937.1|1793863_1796050_-	copper-translocating P-type ATPase	NA	A0A218MNH6	uncultured_virus	38.6	5.3e-121
WP_002289040.1|1796049_1796259_-	copper chaperone CopZ	NA	NA	NA	NA	NA
WP_002294855.1|1796271_1796712_-	CopY/TcrY family copper transport repressor	NA	NA	NA	NA	NA
WP_002304690.1|1796785_1797325_-	topology modulation protein	NA	A0A097BYE2	Leuconostoc_phage	34.5	3.8e-20
WP_002288779.1|1797939_1799406_-	amino acid permease	NA	NA	NA	NA	NA
WP_002304688.1|1799716_1801798_-	cadmium-translocating P-type ATPase	NA	E4ZFI9	Streptococcus_phage	35.6	2.4e-115
WP_002288776.1|1802321_1802681_-	YccF domain-containing protein	NA	NA	NA	NA	NA
WP_002326717.1|1802710_1803052_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002304684.1|1803048_1803723_-	SGNH/GDSL hydrolase family protein	NA	NA	NA	NA	NA
WP_002288767.1|1804775_1806074_-|tRNA	asparagine--tRNA ligase	tRNA	A0A2P1EMB4	Moumouvirus	30.3	1.2e-59
WP_002304682.1|1806113_1807304_-	pyridoxal phosphate-dependent aminotransferase	NA	NA	NA	NA	NA
WP_063526626.1|1807324_1807852_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002304681.1|1807898_1810688_-	DNA polymerase III subunit epsilon	NA	A0A1X9I5C8	Streptococcus_phage	30.9	1.1e-89
WP_002288762.1|1810834_1811035_-	cold-shock protein	NA	Q9AZD3	Lactococcus_phage	74.2	2.5e-22
WP_002323868.1|1811486_1811807_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002297185.1|1812084_1813380_+|transposase	ISL3-like element ISEfa5 family transposase	transposase	A0A2D1GQC1	Lysinibacillus_phage	21.4	3.8e-10
WP_002288760.1|1813831_1814950_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002304680.1|1815420_1816728_+	D-alanyl-D-alanine carboxypeptidase	NA	NA	NA	NA	NA
WP_002340453.1|1816846_1818046_+	YdcF family protein	NA	NA	NA	NA	NA
WP_002289547.1|1818072_1819341_-	voltage-gated chloride channel family protein	NA	A0A1X9I5Z9	Streptococcus_phage	31.1	2.2e-42
WP_002348853.1|1820557_1821061_-	HD domain-containing protein	NA	NA	NA	NA	NA
WP_002294889.1|1821183_1821948_-	RNA methyltransferase	NA	A0A2D1A6G0	Rhodococcus_phage	26.1	1.7e-05
WP_002289551.1|1822055_1822331_+	acylphosphatase	NA	NA	NA	NA	NA
WP_002312285.1|1822768_1823719_+	membrane protein insertase YidC	NA	NA	NA	NA	NA
WP_002312284.1|1823897_1824098_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010782560.1|1824902_1825862_+|transposase	IS30-like element IS6770 family transposase	transposase	NA	NA	NA	NA
WP_002312282.1|1826727_1827258_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002312281.1|1827254_1827872_-	VanZ family protein	NA	NA	NA	NA	NA
WP_002312280.1|1828453_1828675_-	transferase	NA	NA	NA	NA	NA
WP_002348669.1|1828852_1830385_-	polysaccharide biosynthesis protein	NA	NA	NA	NA	NA
WP_002312276.1|1830520_1831606_-	glycosyltransferase family 4 protein	NA	NA	NA	NA	NA
WP_002312275.1|1831620_1832340_-	glycosyl transferase	NA	A0A2K9L639	Tupanvirus	25.0	2.6e-08
WP_002312274.1|1832336_1833647_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002348666.1|1833673_1834264_-	poly-gamma-glutamate biosynthesis protein	NA	NA	NA	NA	NA
WP_002312270.1|1834581_1835643_-	glycosyltransferase family 2 protein	NA	A0A1V0SAH6	Catovirus	36.5	1.5e-12
WP_002312264.1|1836210_1837278_-	glycosyltransferase family 4 protein	NA	NA	NA	NA	NA
1835836:1835851	attR	ATAATGAAAATATACT	NA	NA	NA	NA
WP_002291721.1|1837297_1837777_-	EpsH	NA	NA	NA	NA	NA
WP_002325817.1|1837793_1838255_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002312259.1|1838268_1839519_-	nucleotide sugar dehydrogenase	NA	M1IB49	Acanthocystis_turfacea_Chlorella_virus	50.4	8.9e-105
WP_002312258.1|1839896_1841348_-	sugar transferase	NA	NA	NA	NA	NA
WP_002312256.1|1841668_1842433_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002348664.1|1842460_1843159_-	CpsD/CapB family tyrosine-protein kinase	NA	A0A1X9I5D6	Streptococcus_phage	37.1	6.0e-26
WP_002348663.1|1843170_1843950_-	tyrosine protein kinase	NA	NA	NA	NA	NA
WP_002296209.1|1843965_1844910_-	transcriptional regulator	NA	NA	NA	NA	NA
WP_002348662.1|1844955_1845735_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002348661.1|1846114_1848190_-|tRNA	glycine--tRNA ligase subunit beta	tRNA	NA	NA	NA	NA
WP_002305598.1|1848191_1849109_-|tRNA	glycine--tRNA ligase subunit alpha	tRNA	NA	NA	NA	NA
>prophage 9
NZ_CP011281	Enterococcus faecium strain E39, complete genome	2790106	2024099	2050121	2790106	tRNA,holin,transposase,plate,tail	Bacillus_phage(33.33%)	29	NA	NA
WP_000222572.1|2024099_2025053_+|transposase	IS30 family transposase	transposase	NA	NA	NA	NA
WP_002289406.1|2025086_2026316_-	GTPase HflX	NA	NA	NA	NA	NA
WP_002289405.1|2026317_2027235_-|tRNA	tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA	tRNA	NA	NA	NA	NA
WP_002289404.1|2027238_2027976_-	glycerophosphodiester phosphodiesterase	NA	A0A0S2MYI4	Enterococcus_phage	40.0	2.3e-12
WP_002289403.1|2028066_2028594_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002289402.1|2028773_2029367_+	ATP-dependent Clp endopeptidase proteolytic subunit ClpP	NA	A0A223W000	Agrobacterium_phage	55.6	8.9e-55
WP_002289401.1|2029470_2029956_-	gamma carbonic anhydrase family protein	NA	NA	NA	NA	NA
WP_002296291.1|2030108_2030306_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002289400.1|2030400_2032161_-	multidrug efflux ABC transporter subunit EfrB	NA	W8CYL7	Bacillus_phage	28.6	2.5e-52
WP_002296290.1|2032157_2033888_-	multidrug efflux ABC transporter subunit EfrA	NA	W8CYL7	Bacillus_phage	27.6	2.1e-43
WP_002287947.1|2034280_2034493_+	DNA-dependent RNA polymerase auxiliary subunit epsilon family protein	NA	NA	NA	NA	NA
WP_002287948.1|2034494_2036174_+	ribonuclease J	NA	NA	NA	NA	NA
WP_002294067.1|2036427_2036628_-	cold-shock protein	NA	Q9AZD3	Lactococcus_phage	71.2	3.7e-21
WP_002347086.1|2037703_2038102_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002305550.1|2038094_2038547_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002318238.1|2038533_2039040_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002324322.1|2039144_2040323_+|transposase	IS256-like element ISEfm2 family transposase	transposase	NA	NA	NA	NA
WP_086953915.1|2040551_2041891_-|transposase	IS3-like element ISEnfa3 family transposase	transposase	A0A1B1P773	Bacillus_phage	52.7	2.6e-78
WP_002312527.1|2041960_2042986_-	N-acetylmuramoyl-L-alanine amidase	NA	A0A139ZVY1	Enterococcus_phage	61.3	3.6e-64
WP_002286683.1|2042982_2043207_-|holin	holin	holin	NA	NA	NA	NA
WP_002286686.1|2043203_2043497_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002298029.1|2043534_2043672_-	XkdX family protein	NA	NA	NA	NA	NA
WP_002350774.1|2043671_2044079_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002342973.1|2044106_2044631_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002350775.1|2044630_2045080_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002301866.1|2045083_2045701_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002350776.1|2045700_2046609_-|plate	phage baseplate upper protein	plate	A0A1P8BLW0	Lactococcus_phage	25.2	7.8e-10
WP_002347081.1|2046621_2049384_-	CHAP domain-containing protein	NA	Q9AZX5	Lactococcus_phage	39.1	6.0e-138
WP_002303299.1|2049380_2050121_-|tail	tail protein	tail	NA	NA	NA	NA
>prophage 10
NZ_CP011281	Enterococcus faecium strain E39, complete genome	2790106	2060299	2076152	2790106	terminase	Enterococcus_phage(33.33%)	25	NA	NA
WP_002304486.1|2060299_2061718_-|terminase	phage terminase large subunit	terminase	A0A090EUA8	Clostridium_phage	51.5	2.5e-124
WP_002304484.1|2061695_2062124_-	hypothetical protein	NA	A0A1P8BMH5	Lactococcus_phage	63.1	2.6e-40
WP_002311618.1|2062141_2062366_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002304480.1|2062916_2063303_-	hypothetical protein	NA	O34053	Streptococcus_phage	55.2	1.9e-29
WP_002322045.1|2063315_2063729_-	autolysin	NA	C9E2P5	Enterococcus_phage	80.3	2.5e-56
WP_002286693.1|2063805_2064102_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002304475.1|2064098_2064302_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002304474.1|2064308_2064539_-	hypothetical protein	NA	A0A0S2MYD2	Enterococcus_phage	50.7	8.8e-11
WP_002304473.1|2064535_2064847_-	hypothetical protein	NA	A0A0D3MVS9	Staphylococcus_phage	58.0	5.3e-27
WP_002304472.1|2064985_2065801_-	prohibitin family protein	NA	A0A288TXV9	Enterococcus_phage	69.4	1.8e-82
WP_002350868.1|2065797_2066124_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002292988.1|2066120_2066282_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002304469.1|2066296_2066656_-	DUF1064 domain-containing protein	NA	A0A1P8BKR1	Lactococcus_phage	47.5	6.8e-18
WP_002304468.1|2066652_2067504_-	AAA family ATPase	NA	A0A0P0I3L9	Lactobacillus_phage	30.2	3.0e-27
WP_002303278.1|2067518_2068319_-	hypothetical protein	NA	B4XYS6	Lactobacillus_phage	54.5	8.9e-58
WP_002303277.1|2068361_2069252_-	hypothetical protein	NA	D2IYT9	Enterococcus_phage	84.5	6.2e-137
WP_002303275.1|2069253_2070195_-	endonuclease	NA	D2IZK1	Enterococcus_phage	78.9	2.7e-146
WP_002303273.1|2070427_2070763_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002304466.1|2071014_2071254_+	DUF2188 domain-containing protein	NA	E8ZD70	Streptococcus_phage	81.1	1.8e-27
WP_002299038.1|2071562_2071718_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002304464.1|2071789_2072020_+	DUF2188 domain-containing protein	NA	E8ZD70	Streptococcus_phage	49.3	4.4e-10
WP_002303266.1|2072187_2072454_-	helix-turn-helix transcriptional regulator	NA	A0A1W6JP54	Staphylococcus_phage	52.7	5.4e-12
WP_002303265.1|2072653_2073358_+	LexA family transcriptional regulator	NA	D7RWF2	Brochothrix_phage	42.4	6.2e-39
WP_002303264.1|2073444_2074734_+	DUF4041 domain-containing protein	NA	M1NRY5	Streptococcus_phage	74.0	5.6e-46
WP_002303263.1|2074799_2076152_+	recombinase family protein	NA	D2IZV7	Enterococcus_phage	55.3	1.7e-133
>prophage 11
NZ_CP011281	Enterococcus faecium strain E39, complete genome	2790106	2410092	2543225	2790106	protease,transposase,tRNA,holin	Bacillus_phage(19.35%)	99	NA	NA
WP_002297218.1|2410092_2411388_+|transposase	ISL3-like element ISEfa11 family transposase	transposase	A0A2D1GQC1	Lysinibacillus_phage	20.9	2.1e-08
WP_002294493.1|2411542_2412226_+	rhamnogalacturonan acetylesterase	NA	NA	NA	NA	NA
WP_002285996.1|2412227_2413064_+	sugar phosphate isomerase/epimerase	NA	NA	NA	NA	NA
WP_002302556.1|2413074_2414829_+	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	26.9	4.1e-39
WP_002285994.1|2415104_2415446_-	YlbF family regulator	NA	A0A1X9I5Y8	Streptococcus_phage	34.9	1.3e-10
WP_002294492.1|2415513_2417685_-	PBP1A family penicillin-binding protein	NA	NA	NA	NA	NA
WP_002285989.1|2417895_2418753_+	RluA family pseudouridine synthase	NA	NA	NA	NA	NA
WP_002285988.1|2418823_2419681_-	ROK family protein	NA	NA	NA	NA	NA
WP_002285985.1|2419665_2422368_-	alpha-mannosidase	NA	NA	NA	NA	NA
WP_002294491.1|2422380_2423670_-	glycoside hydrolase family 125 protein	NA	NA	NA	NA	NA
WP_002302559.1|2423819_2424866_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_002285980.1|2424867_2427021_+	alpha-1,2-mannosidase	NA	NA	NA	NA	NA
WP_002304851.1|2427493_2428945_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_002285976.1|2428941_2430666_-	sensor histidine kinase	NA	NA	NA	NA	NA
WP_010782528.1|2430658_2431273_-	DUF624 domain-containing protein	NA	NA	NA	NA	NA
WP_002285974.1|2431617_2433075_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_002285972.1|2433115_2434036_-	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
WP_002285971.1|2434047_2434995_-	sugar ABC transporter permease	NA	NA	NA	NA	NA
WP_002285969.1|2435473_2436193_-	rRNA pseudouridine synthase	NA	NA	NA	NA	NA
WP_002304848.1|2436241_2437888_-	polysaccharide biosynthesis protein	NA	NA	NA	NA	NA
WP_002285964.1|2438066_2438657_+	transporter	NA	NA	NA	NA	NA
WP_002285962.1|2438748_2440254_+	UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L- lysine ligase	NA	NA	NA	NA	NA
WP_002285961.1|2440337_2441690_-	PTS cellobiose transporter subunit IIC	NA	NA	NA	NA	NA
WP_002285960.1|2441689_2442208_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002285954.1|2442223_2442550_-	PTS cellobiose transporter subunit IIA	NA	NA	NA	NA	NA
WP_002285949.1|2442562_2444542_-	BglG family transcription antiterminator	NA	NA	NA	NA	NA
WP_002285948.1|2444562_2444877_-	PTS cellobiose transporter subunit IIB	NA	NA	NA	NA	NA
WP_002285944.1|2445044_2445338_+	antibiotic biosynthesis monooxygenase	NA	NA	NA	NA	NA
WP_002321621.1|2445415_2446528_-	FUSC family protein	NA	NA	NA	NA	NA
WP_002297280.1|2446680_2446905_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002285932.1|2446914_2447094_+|transposase	transposase	transposase	NA	NA	NA	NA
WP_104674935.1|2447287_2447458_+	hypothetical protein	NA	NA	NA	NA	NA
WP_099704171.1|2447881_2448622_-	LPXTG cell wall anchor domain-containing protein	NA	NA	NA	NA	NA
WP_002285924.1|2449047_2452119_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002348774.1|2453680_2455000_+|transposase	IS1380-like element IS1678 family transposase	transposase	A0A1X9I6F6	Streptococcus_phage	82.7	6.3e-210
WP_002303189.1|2455709_2456471_-	MerR family transcriptional regulator	NA	NA	NA	NA	NA
WP_002285920.1|2456570_2458292_+	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	28.0	1.7e-37
WP_002285918.1|2458306_2460091_+	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	28.2	2.7e-46
WP_002285917.1|2460471_2462025_-	glycosyl hydrolase	NA	NA	NA	NA	NA
WP_002285916.1|2462372_2464787_-|tRNA	leucine--tRNA ligase	tRNA	A0A2H4PQS0	Staphylococcus_phage	72.8	0.0e+00
WP_002301403.1|2465213_2467232_-	LysM peptidoglycan-binding domain-containing protein	NA	Q9ZXE4	Bacillus_phage	39.6	5.8e-13
WP_002285911.1|2467601_2468258_+	phosphatase PAP2 family protein	NA	NA	NA	NA	NA
WP_002285909.1|2468257_2469214_+	TIGR01212 family radical SAM protein	NA	A0A2H4PQV5	Staphylococcus_phage	57.4	3.3e-43
WP_002285906.1|2469213_2469780_+	methyltransferase domain-containing protein	NA	A0A2H4PQV0	Staphylococcus_phage	42.8	2.2e-34
WP_000997695.1|2470398_2471577_-|transposase	IS256-like element ISEf1 family transposase	transposase	NA	NA	NA	NA
WP_076005178.1|2471600_2471792_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002296840.1|2471984_2473172_-|transposase	IS256-like element IS16 family transposase	transposase	A0A0K2CZ57	Paenibacillus_phage	46.3	8.2e-92
WP_025479400.1|2473268_2473571_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002303477.1|2474345_2475365_-	N-acetylmuramoyl-L-alanine amidase	NA	A0A1G5SA77	Enterococcus_phage	66.1	2.4e-60
WP_002301818.1|2475375_2475582_-|holin	holin	holin	NA	NA	NA	NA
WP_002301399.1|2475714_2476674_-|transposase	IS30 family transposase	transposase	H7BW61	unidentified_phage	26.8	2.2e-10
WP_002304713.1|2476876_2477809_+	DUF4041 domain-containing protein	NA	M1NRY5	Streptococcus_phage	53.8	1.8e-57
WP_002341521.1|2477880_2478237_+	hypothetical protein	NA	U4KJ82	Streptococcus_phage	42.2	9.2e-15
WP_000997695.1|2478334_2479513_+|transposase	IS256-like element ISEf1 family transposase	transposase	NA	NA	NA	NA
WP_086953915.1|2480383_2481723_-|transposase	IS3-like element ISEnfa3 family transposase	transposase	A0A1B1P773	Bacillus_phage	52.7	2.6e-78
WP_002301355.1|2481848_2483621_-	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	29.4	1.2e-54
WP_002285883.1|2483623_2485336_-	ABC transporter ATP-binding protein	NA	F2Y302	Organic_Lake_phycodnavirus	25.4	1.2e-14
WP_002285876.1|2485450_2486119_+	TetR family transcriptional regulator	NA	NA	NA	NA	NA
WP_002295567.1|2486185_2486974_-	esterase family protein	NA	NA	NA	NA	NA
WP_002295566.1|2487056_2488529_-	MFS transporter	NA	NA	NA	NA	NA
WP_002289731.1|2488658_2489852_-	methionine adenosyltransferase	NA	A0A2H4PQS6	Staphylococcus_phage	72.0	1.3e-150
WP_002297218.1|2490206_2491502_+|transposase	ISL3-like element ISEfa11 family transposase	transposase	A0A2D1GQC1	Lysinibacillus_phage	20.9	2.1e-08
WP_002296055.1|2499683_2501180_-|tRNA	lysine--tRNA ligase	tRNA	A0A2K9KZX5	Tupanvirus	40.9	8.7e-91
WP_002290055.1|2501290_2502295_-|tRNA	tRNA dihydrouridine synthase DusB	tRNA	NA	NA	NA	NA
WP_002296053.1|2502295_2503183_-	Hsp33 family molecular chaperone HslO	NA	NA	NA	NA	NA
WP_002287418.1|2503399_2505511_-|protease	ATP-dependent zinc metalloprotease FtsH	protease	C7U047	Ostreococcus_tauri_virus	50.3	9.1e-110
WP_002287415.1|2505600_2506146_-	hypoxanthine phosphoribosyltransferase	NA	A0A1V0SEQ1	Hokovirus	25.3	4.1e-06
WP_002287414.1|2506145_2507591_-|tRNA	tRNA lysidine(34) synthetase TilS	tRNA	E3T4I1	Cafeteria_roenbergensis_virus	24.5	6.8e-08
WP_002287412.1|2507710_2508181_-	RNA-binding protein S1	NA	NA	NA	NA	NA
WP_002287409.1|2508226_2508652_-	septum formation initiator family protein	NA	NA	NA	NA	NA
WP_002287407.1|2508718_2508988_-	RNA-binding S4 domain-containing protein	NA	NA	NA	NA	NA
WP_002287405.1|2508998_2510594_-	polysaccharide biosynthesis protein	NA	NA	NA	NA	NA
WP_002287403.1|2510608_2514130_-	transcription-repair coupling factor	NA	NA	NA	NA	NA
WP_002287401.1|2514146_2514707_-|tRNA	aminoacyl-tRNA hydrolase	tRNA	NA	NA	NA	NA
WP_002287399.1|2515059_2516034_+	L-lactate dehydrogenase	NA	NA	NA	NA	NA
WP_002287397.1|2516203_2517604_+	L,D-transpeptidase family protein	NA	NA	NA	NA	NA
WP_002287391.1|2517681_2518404_-	YebC/PmpR family DNA-binding transcriptional regulator	NA	NA	NA	NA	NA
WP_002287389.1|2518482_2518989_-	membrane protein	NA	NA	NA	NA	NA
WP_002322796.1|2519111_2520911_+	M3 family oligoendopeptidase	NA	NA	NA	NA	NA
WP_002297218.1|2521072_2522368_+|transposase	ISL3-like element ISEfa11 family transposase	transposase	A0A2D1GQC1	Lysinibacillus_phage	20.9	2.1e-08
WP_002322795.1|2522500_2524039_-	hypothetical protein	NA	B5LJD6	Mycobacterium_phage	50.5	2.3e-17
WP_002287385.1|2524293_2524803_-	rod shape-determining protein MreD	NA	NA	NA	NA	NA
WP_002296044.1|2524806_2525661_-	rod shape-determining protein MreC	NA	NA	NA	NA	NA
WP_002287382.1|2525815_2526454_-	thiamine diphosphokinase	NA	NA	NA	NA	NA
WP_002287380.1|2526454_2527105_-	ribulose-phosphate 3-epimerase	NA	NA	NA	NA	NA
WP_002287379.1|2527117_2528017_-	ribosome small subunit-dependent GTPase A	NA	NA	NA	NA	NA
WP_002287377.1|2528181_2530251_-	Stk1 family PASTA domain-containing Ser/Thr kinase	NA	A0A1V0SDC3	Indivirus	30.3	3.5e-21
WP_002287376.1|2530247_2530988_-	Stp1/IreP family PP2C-type Ser/Thr phosphatase	NA	NA	NA	NA	NA
WP_002287374.1|2531000_2532359_-	16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB	NA	NA	NA	NA	NA
WP_002287372.1|2532358_2533297_-|tRNA	methionyl-tRNA formyltransferase	tRNA	E3SNR5	Prochlorococcus_phage	29.7	5.2e-09
WP_002287369.1|2533289_2533781_-	peptide deformylase	NA	E3SLL2	Synechococcus_phage	43.2	7.9e-17
WP_002287367.1|2533795_2536204_-	primosomal protein N'	NA	NA	NA	NA	NA
WP_002287365.1|2536456_2536762_-	DNA-directed RNA polymerase subunit omega	NA	NA	NA	NA	NA
WP_002287358.1|2536766_2537381_-	guanylate kinase	NA	A0A143DIC6	Abalone_herpesvirus	34.6	2.2e-24
WP_002287356.1|2537867_2538152_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002287354.1|2538169_2539060_-	YicC family protein	NA	NA	NA	NA	NA
WP_002287352.1|2539079_2539298_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002287350.1|2539267_2540968_-	patatin-like phospholipase family protein	NA	NA	NA	NA	NA
WP_000122610.1|2541932_2543225_-|transposase	ISL3 family transposase	transposase	A0A1S5SBP9	Streptococcus_phage	38.9	3.2e-57
>prophage 12
NZ_CP011281	Enterococcus faecium strain E39, complete genome	2790106	2617334	2630449	2790106		Streptococcus_phage(83.33%)	16	NA	NA
WP_002297366.1|2617334_2617649_+	YdcP family protein	NA	A0A1S5SF38	Streptococcus_phage	53.4	1.0e-25
WP_002297365.1|2617661_2618036_+	YdcP family protein	NA	A0A1S5SF96	Streptococcus_phage	66.1	2.4e-34
WP_002311649.1|2618036_2618381_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002343904.1|2618463_2619609_+	DUF87 domain-containing protein	NA	A0A1S5SFB5	Streptococcus_phage	62.8	6.0e-132
WP_002297361.1|2620323_2622183_+	group II intron reverse transcriptase/maturase	NA	A0A0U4J920	Pseudomonas_phage	26.0	2.8e-30
WP_002297360.1|2622276_2622516_+	hypothetical protein	NA	A0A1S5SFB5	Streptococcus_phage	80.3	2.1e-23
WP_002297358.1|2622593_2623268_+	AAA family ATPase	NA	NA	NA	NA	NA
WP_002321810.1|2623500_2623935_+	DNA (cytosine-5-)-methyltransferase	NA	A0A1S5SDW2	Streptococcus_phage	77.1	6.5e-63
WP_002297356.1|2623935_2624643_+	DNA methylase	NA	A0A1S5SEK0	Streptococcus_phage	50.4	5.8e-53
WP_002297354.1|2624632_2624923_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002297353.1|2625181_2626366_+	XRE family transcriptional regulator	NA	A0A1S5SEX3	Streptococcus_phage	61.6	2.9e-142
WP_002317225.1|2626362_2626500_+	DUF3789 domain-containing protein	NA	NA	NA	NA	NA
WP_002286940.1|2627245_2629156_+	group II intron reverse transcriptase/maturase	NA	A0A0U4J920	Pseudomonas_phage	29.8	7.1e-37
WP_033658092.1|2629259_2629484_+	hypothetical protein	NA	A0A1S5SEY0	Streptococcus_phage	83.8	1.2e-23
WP_002297350.1|2629496_2630000_+	antirestriction protein ArdA	NA	A0A1S5SF25	Streptococcus_phage	59.9	9.2e-53
WP_002297349.1|2630059_2630449_+	conjugal transfer protein	NA	A0A1S5SEX7	Streptococcus_phage	68.3	3.9e-43
>prophage 13
NZ_CP011281	Enterococcus faecium strain E39, complete genome	2790106	2657627	2690900	2790106	transposase,integrase	Bacillus_phage(37.5%)	36	2674556:2674571	2684801:2684816
WP_002297332.1|2657627_2657822_+|transposase	IS3 family transposase	transposase	NA	NA	NA	NA
WP_077828743.1|2658013_2658169_+|integrase,transposase	DDE-type integrase/transposase/recombinase	integrase,transposase	NA	NA	NA	NA
WP_002297326.1|2660025_2661642_-	cobalamin biosynthesis protein	NA	NA	NA	NA	NA
WP_002317220.1|2661759_2661978_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_106913778.1|2662109_2662634_+|transposase	IS30 family transposase	transposase	W5R8L2	Staphylococcus_phage	36.1	8.8e-14
WP_002304820.1|2662826_2663066_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002297324.1|2663089_2664613_-	zinc ABC transporter substrate-binding protein AdcA	NA	NA	NA	NA	NA
WP_002322279.1|2664630_2664753_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002304819.1|2664782_2665766_-	GTP-binding protein	NA	NA	NA	NA	NA
WP_002297320.1|2665789_2665939_-	50S ribosomal protein L33	NA	NA	NA	NA	NA
WP_002297319.1|2665959_2666337_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002297318.1|2666368_2666548_-	50S ribosomal protein L32	NA	NA	NA	NA	NA
WP_002297316.1|2666562_2666832_-	30S ribosomal protein S14	NA	NA	NA	NA	NA
WP_002297310.1|2667354_2669097_-	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	29.1	3.4e-30
WP_002297309.1|2669080_2670835_-	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	24.8	1.3e-24
WP_002297308.1|2670944_2671514_-	MptD family putative ECF transporter S component	NA	NA	NA	NA	NA
WP_002311663.1|2671531_2672956_-	energy-coupling factor ABC transporter ATP-binding protein	NA	A0A1V0SGN0	Hokovirus	26.4	5.9e-20
WP_002297304.1|2672957_2673626_-	cobalt transporter	NA	NA	NA	NA	NA
WP_071858995.1|2673756_2674341_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
2674556:2674571	attL	ACCTTTTCTAAAATAA	NA	NA	NA	NA
WP_002297302.1|2674671_2674905_-	iron-dependent repressor	NA	NA	NA	NA	NA
WP_002297295.1|2674919_2675870_-	metal ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_002297294.1|2675866_2676709_-	metal ABC transporter permease	NA	NA	NA	NA	NA
WP_002297293.1|2677030_2678218_+|transposase	IS110 family transposase	transposase	A0A0U3ULR1	Bacillus_phage	28.7	4.6e-26
WP_002297292.1|2678309_2679050_-	metal ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	33.2	5.7e-19
WP_002320809.1|2679737_2679896_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_002297291.1|2679967_2681194_+|integrase	site-specific integrase	integrase	NA	NA	NA	NA
WP_002348684.1|2681523_2682144_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002364278.1|2682224_2682635_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002298782.1|2684184_2684961_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
2684801:2684816	attR	TTATTTTAGAAAAGGT	NA	NA	NA	NA
WP_002322873.1|2685058_2685706_-	HAD family phosphatase	NA	M1I5S4	Acanthocystis_turfacea_Chlorella_virus	27.4	4.5e-12
WP_002298780.1|2685705_2686536_-	PTS system mannose/fructose/sorbose family transporter subunit IID	NA	NA	NA	NA	NA
WP_002298779.1|2686535_2687285_-	PTS sugar transporter subunit IIC	NA	NA	NA	NA	NA
WP_002298777.1|2687298_2687763_-	PTS sugar transporter subunit IIB	NA	NA	NA	NA	NA
WP_002312606.1|2687812_2688274_-	PTS fructose transporter subunit IIA	NA	NA	NA	NA	NA
WP_002298774.1|2688255_2689230_-	SIS domain-containing protein	NA	NA	NA	NA	NA
WP_076005180.1|2689436_2690900_+|transposase	IS1182-like element ISEfa7 family transposase	transposase	A0A1X9I5T2	Streptococcus_phage	47.8	2.2e-123
>prophage 1
NZ_CP011282	Enterococcus faecium strain E39 plasmid p1, complete sequence	152440	3393	110026	152440	holin,bacteriocin,transposase,integrase	Streptococcus_phage(16.67%)	99	91807:91821	109150:109164
WP_002297404.1|3393_4644_-|transposase	IS110 family transposase	transposase	M1NSC9	Streptococcus_phage	63.3	4.0e-113
WP_002305801.1|5053_7426_+	hypothetical protein	NA	B5SP25	Lactococcus_phage	29.7	3.4e-12
WP_002353594.1|7486_8956_+	DUF3991 domain-containing protein	NA	NA	NA	NA	NA
WP_002303486.1|8966_10976_+	DNA topoisomerase III	NA	A0A1X9I6W8	Streptococcus_phage	52.6	1.6e-111
WP_002303484.1|11321_11918_+	transcriptional regulator	NA	NA	NA	NA	NA
WP_002303483.1|11930_12830_+	nucleotidyl transferase AbiEii/AbiGii toxin family protein	NA	NA	NA	NA	NA
WP_002301801.1|12832_12964_+	single-stranded DNA-binding protein	NA	A8ATZ7	Listeria_phage	83.3	1.3e-11
WP_002305808.1|12985_13318_+	single-stranded DNA-binding protein	NA	W6LM61	Streptococcus_phage	53.2	6.1e-21
WP_002303482.1|13362_13596_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002295624.1|13754_13877_-|holin	putative holin-like toxin	holin	NA	NA	NA	NA
WP_002305809.1|14066_14291_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002305810.1|14733_14940_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002300797.1|14939_15191_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002300801.1|15371_15644_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002300804.1|16088_16268_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002311569.1|16326_16683_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000222572.1|17651_18605_-|transposase	IS30 family transposase	transposase	W5R8L2	Staphylococcus_phage	35.8	3.7e-34
WP_002300807.1|18725_18989_+|bacteriocin	circular bacteriocin, circularin A/uberolysin family	bacteriocin	NA	NA	NA	NA
WP_000997695.1|19360_20539_+|transposase	IS256-like element ISEf1 family transposase	transposase	A0A220NQR7	Corynebacterium_phage	25.6	3.0e-30
WP_002332708.1|21070_21979_+|transposase	IS982-like element ISEfm1 family transposase	transposase	NA	NA	NA	NA
WP_002300835.1|23923_24379_+	PTS sugar transporter subunit IIA	NA	NA	NA	NA	NA
WP_002300836.1|24392_25721_+	PTS galactitol transporter subunit IIC	NA	NA	NA	NA	NA
WP_002300838.1|25754_26039_+	PTS sugar transporter subunit IIB	NA	NA	NA	NA	NA
WP_002300840.1|26040_26556_+	YjbQ family protein	NA	NA	NA	NA	NA
WP_002300841.1|26571_27234_+	ribulose-phosphate 3-epimerase	NA	NA	NA	NA	NA
WP_002300842.1|27240_27813_+	SIS domain-containing protein	NA	NA	NA	NA	NA
WP_002303202.1|27984_29532_-|transposase	IS66 family transposase	transposase	S5VTD3	Leptospira_phage	28.9	2.8e-44
WP_002287659.1|29633_29987_-	IS66 family insertion sequence element accessory protein TnpB	NA	S5VXZ8	Leptospira_phage	38.7	5.7e-17
WP_002285758.1|29976_30171_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002300843.1|30352_31873_-|transposase	IS66 family transposase	transposase	S5VTD3	Leptospira_phage	31.6	1.1e-48
WP_002305884.1|32115_32301_-	IS66 family insertion sequence hypothetical protein	NA	NA	NA	NA	NA
WP_002300846.1|32284_32467_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002301839.1|33420_34020_+|integrase	tyrosine-type recombinase/integrase	integrase	D2XR58	Bacillus_phage	36.1	1.3e-29
WP_002322465.1|34083_34683_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002305879.1|35698_36571_-	ROK family protein	NA	NA	NA	NA	NA
WP_002324322.1|36747_37926_-|transposase	IS256-like element ISEfm2 family transposase	transposase	A0A220NQR7	Corynebacterium_phage	24.9	2.6e-29
WP_002303302.1|38167_40114_-	PTS beta-glucoside transporter subunit IIBCA	NA	NA	NA	NA	NA
WP_002302078.1|40298_41738_+	sucrose-6-phosphate hydrolase	NA	S6ATV4	Bacillus_phage	25.1	1.4e-16
WP_002302077.1|41739_42702_+	LacI family transcriptional regulator	NA	C6ZCU4	Enterobacteria_phage	25.8	2.3e-20
WP_086953894.1|42871_44298_-|transposase	IS3-like element ISEfa10 family transposase	transposase	A0A1B1P773	Bacillus_phage	40.2	2.3e-48
WP_002301718.1|44540_44996_+|transposase	IS200/IS605 family transposase	transposase	I4AZI8	Saccharomonospora_phage	31.6	1.3e-13
WP_002289255.1|45581_45812_-	resolvase	NA	NA	NA	NA	NA
WP_002289254.1|46041_46860_-	MurR/RpiR family transcriptional regulator	NA	NA	NA	NA	NA
WP_002289253.1|47020_47710_+	N-acetylmannosamine-6-phosphate 2-epimerase	NA	NA	NA	NA	NA
WP_002289252.1|47723_49226_+	PTS glucose transporter subunit IIBC	NA	NA	NA	NA	NA
WP_002300328.1|49238_49715_+	PTS glucose transporter subunit IIA	NA	NA	NA	NA	NA
WP_086956687.1|50212_51375_-|transposase	IS3 family transposase	transposase	A0A2I7SC85	Paenibacillus_phage	51.3	1.6e-79
WP_002287870.1|52492_53011_+	ClbS/DfsB family four-helix bundle protein	NA	NA	NA	NA	NA
WP_002301591.1|55086_56172_+	tyrosine recombinase XerS	NA	NA	NA	NA	NA
WP_000222572.1|56279_57233_-|transposase	IS30 family transposase	transposase	W5R8L2	Staphylococcus_phage	35.8	3.7e-34
WP_002301126.1|57363_58614_-	PTS sugar transporter subunit IIC	NA	NA	NA	NA	NA
WP_002298736.1|58632_59559_-	PEP phosphonomutase	NA	NA	NA	NA	NA
WP_002301128.1|59637_60633_-	tagatose-bisphosphate aldolase	NA	NA	NA	NA	NA
WP_002301130.1|60648_61818_-	SIS domain-containing protein	NA	NA	NA	NA	NA
WP_002301131.1|61833_62568_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_087043335.1|63338_64501_-|transposase	IS3 family transposase	transposase	A0A2I7SC85	Paenibacillus_phage	51.3	1.2e-79
WP_002301811.1|65069_66362_-|transposase	IS256 family transposase	transposase	A0A218MNI5	uncultured_virus	41.0	6.1e-32
WP_002313174.1|66635_66896_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002324322.1|67133_68312_+|transposase	IS256-like element ISEfm2 family transposase	transposase	A0A220NQR7	Corynebacterium_phage	24.9	2.6e-29
WP_002303110.1|68798_69836_-|transposase	IS3 family transposase	transposase	A0A1P8CWQ3	Bacillus_phage	28.5	7.1e-07
WP_002304895.1|69832_70354_-|transposase	transposase	transposase	NA	NA	NA	NA
WP_002304894.1|70402_70669_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002303113.1|71344_71896_-	DUF334 domain-containing protein	NA	NA	NA	NA	NA
WP_002319817.1|72440_73121_+|transposase	IS6-like element ISS1N family transposase	transposase	A0A1X9I6C6	Streptococcus_phage	84.1	2.5e-109
WP_002304893.1|73148_73712_+	recombinase family protein	NA	A0A1V0E035	Clostridioides_phage	34.9	2.2e-18
WP_000824191.1|73756_73924_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000366408.1|73957_74257_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001224538.1|74297_74915_-	recombinase family protein	NA	Q1MVP4	Enterobacteria_phage	33.1	5.1e-13
WP_002304891.1|75239_75635_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000344083.1|75714_78066_-	DUF1906 domain-containing protein	NA	NA	NA	NA	NA
WP_000718009.1|78190_78880_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000751236.1|78893_79346_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001015311.1|79476_80157_+|transposase	IS6-like element IS1216 family transposase	transposase	A0A1X9I6C6	Streptococcus_phage	99.6	1.5e-127
WP_002300494.1|80258_81578_-	HAMP domain-containing histidine kinase	NA	NA	NA	NA	NA
WP_002285815.1|81574_82228_-	response regulator transcription factor	NA	W8CYM9	Bacillus_phage	33.2	4.0e-24
WP_002348630.1|82937_83654_-	aminotransferase class V-fold PLP-dependent enzyme	NA	Q2XUY6	environmental_halophage	50.0	4.5e-45
WP_016922460.1|83777_83963_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002302261.1|85569_86601_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	34.6	1.8e-26
WP_002313180.1|86607_87438_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_002302265.1|87434_88241_-	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_002302267.1|88246_89071_-	type I phosphodiesterase/nucleotide pyrophosphatase	NA	NA	NA	NA	NA
WP_002347701.1|89060_90161_-	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_002302270.1|90338_91124_+	histidinol phosphate phosphatase	NA	NA	NA	NA	NA
WP_002330694.1|91156_91540_+	hypothetical protein	NA	NA	NA	NA	NA
WP_077828694.1|91615_91747_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002322470.1|91715_91952_+	peptidylprolyl isomerase	NA	NA	NA	NA	NA
91807:91821	attL	ATGAGGGCTTTTTCG	NA	NA	NA	NA
WP_002302275.1|92029_93001_-	radical SAM protein	NA	NA	NA	NA	NA
WP_063526629.1|93652_95275_+|transposase	IS1182 family transposase	transposase	A0A1X9I5T2	Streptococcus_phage	48.0	8.5e-124
WP_002301195.1|95560_96937_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_002298083.1|96936_97593_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	32.1	1.3e-22
WP_002301194.1|97602_98880_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_099745858.1|99129_100291_+|transposase	IS3 family transposase	transposase	A0A2I7SC85	Paenibacillus_phage	53.8	1.2e-79
WP_063526631.1|100723_101902_-|transposase	IS256-like element ISEfm2 family transposase	transposase	A0A220NQR7	Corynebacterium_phage	25.1	1.2e-29
WP_063526633.1|101972_102224_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002326839.1|102248_103157_-|transposase	IS982-like element ISEfm1 family transposase	transposase	NA	NA	NA	NA
WP_002301108.1|103832_104387_-|integrase	tyrosine-type recombinase/integrase	integrase	W8CYP1	Bacillus_phage	46.1	8.6e-36
WP_000997695.1|104875_106054_-|transposase	IS256-like element ISEf1 family transposase	transposase	A0A220NQR7	Corynebacterium_phage	25.6	3.0e-30
WP_002307497.1|107367_108180_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002316137.1|108853_110026_+|transposase	IS256 family transposase	transposase	A0A0N9STL0	Staphylococcus_phage	98.4	1.1e-133
109150:109164	attR	CGAAAAAGCCCTCAT	NA	NA	NA	NA
>prophage 1
NZ_CP015123	Enterococcus faecium strain E39 plasmid p3, complete sequence	56285	44538	52178	56285	transposase	Temperate_phage(16.67%)	14	NA	NA
WP_002321302.1|44538_45012_+	single-stranded DNA-binding protein	NA	Q938M7	Temperate_phage	62.0	5.6e-44
WP_002321303.1|45377_45638_+	hypothetical protein	NA	A0A0S2MYI8	Enterococcus_phage	51.4	3.4e-11
WP_002296239.1|46082_46289_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002305766.1|46288_46540_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002305764.1|46555_46972_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002348912.1|46953_47226_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002305759.1|47392_47794_+|transposase	IS200/IS605 family transposase	transposase	A0A1P8BMC0	Lactococcus_phage	43.1	1.4e-24
WP_002305757.1|47805_48951_+|transposase	IS200/IS605 family element transposase accessory protein TnpB	transposase	D9J0Y9	Brochothrix_phage	74.6	7.7e-164
WP_002287514.1|49188_49452_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002321032.1|49445_49796_+	type II toxin-antitoxin system PemK/MazF family toxin	NA	NA	NA	NA	NA
WP_002318230.1|49819_50434_-	recombinase family protein	NA	M9Q1K0	Clostridium_phage	31.9	2.6e-17
WP_002288787.1|50747_51170_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002299573.1|51179_51383_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002299575.1|51593_52178_+	recombinase family protein	NA	A0A0A7NPV4	Enterobacteria_phage	51.7	5.9e-43
>prophage 1
NZ_CP011284	Enterococcus faecium strain E39 plasmid p4, complete sequence	37865	1656	10501	37865	transposase	Streptococcus_phage(100.0%)	11	NA	NA
WP_011117477.1|1656_2343_-|transposase	IS6-like element IS1216 family transposase	transposase	A0A1X9I6C6	Streptococcus_phage	98.7	6.5e-126
WP_001814874.1|2482_2566_+	23S rRNA methyltransferase attenuation leader peptide	NA	NA	NA	NA	NA
WP_001038792.1|2690_3428_+	23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(B)	NA	E4ZFQ0	Streptococcus_phage	99.2	7.0e-134
WP_000085862.1|3432_3564_+	hypothetical protein	NA	E4ZFP9	Streptococcus_phage	100.0	7.9e-17
WP_000567888.1|4721_4967_+	single-stranded DNA-binding protein	NA	NA	NA	NA	NA
WP_000228166.1|5069_5939_+	hypothetical protein	NA	A0A1X9I6C9	Streptococcus_phage	95.8	4.3e-159
WP_000662263.1|5919_6654_+	class I SAM-dependent methyltransferase	NA	A0A1X9I6N4	Streptococcus_phage	100.0	1.5e-141
WP_000627290.1|7595_8138_+	streptothricin N-acetyltransferase Sat4	NA	A0A1B0RXL7	Streptococcus_phage	100.0	8.9e-94
WP_001096887.1|8230_9025_+	aminoglycoside O-phosphotransferase APH(3')-IIIa	NA	E4ZFP6	Streptococcus_phage	100.0	2.3e-154
WP_063526669.1|9300_9792_+	HTH domain-containing protein	NA	A0A1B0RXM1	Streptococcus_phage	99.3	9.5e-79
WP_002354485.1|9814_10501_-|transposase	IS6-like element IS1216 family transposase	transposase	A0A1X9I6C6	Streptococcus_phage	99.6	2.0e-127
