The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP011255	Bordetella pertussis strain I344 chromosome, complete genome	4111065	27282	70036	4111065	tRNA,transposase	Synechococcus_phage(50.0%)	41	NA	NA
WP_010930363.1|27282_28233_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023995007.1|28314_28650_-	CoA transferase	NA	NA	NA	NA	NA
WP_010929578.1|28674_29109_-	OB-fold domain-containing protein	NA	NA	NA	NA	NA
WP_019247164.1|29141_30359_-	thiolase family protein	NA	NA	NA	NA	NA
WP_010929580.1|30364_30862_-	MaoC family dehydratase	NA	NA	NA	NA	NA
WP_019247165.1|31069_32005_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929582.1|32214_33006_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010929583.1|33048_34470_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_005012808.1|34625_35576_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814398.1|35572_36763_-	MFS transporter	NA	NA	NA	NA	NA
WP_010929585.1|37012_37924_+|tRNA	glycine--tRNA ligase subunit alpha	tRNA	NA	NA	NA	NA
WP_010929586.1|37925_40064_+|tRNA	glycine--tRNA ligase subunit beta	tRNA	NA	NA	NA	NA
WP_003814404.1|40060_40600_+	D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase	NA	NA	NA	NA	NA
WP_003814405.1|40603_41332_+	1-acyl-sn-glycerol-3-phosphate acyltransferase	NA	NA	NA	NA	NA
WP_010929587.1|41318_42212_+	M48 family metallopeptidase	NA	NA	NA	NA	NA
WP_019247766.1|42282_42678_+	lactoylglutathione lyase	NA	NA	NA	NA	NA
WP_003814412.1|42687_43218_+	peptide deformylase	NA	E3SLL2	Synechococcus_phage	35.4	3.7e-12
WP_010929588.1|43663_44614_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929589.1|45200_45749_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815265.1|45720_45957_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003815255.1|46084_46978_+	AEC family transporter	NA	NA	NA	NA	NA
WP_010929590.1|48147_49395_+	homoserine O-acetyltransferase	NA	NA	NA	NA	NA
WP_003817748.1|49391_50006_+	methionine biosynthesis protein MetW	NA	NA	NA	NA	NA
WP_010929591.1|50141_51092_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_029443813.1|51134_52391_+	muropeptide transporter	NA	NA	NA	NA	NA
WP_010929592.1|53622_54357_-	aspartate/glutamate racemase family protein	NA	NA	NA	NA	NA
WP_019247224.1|54362_54953_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.6	3.2e-20
WP_003817737.1|54977_55667_-	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_023852650.1|55663_56425_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010929594.1|56504_57404_-	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929584.1|57497_58448_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929595.1|59248_60475_-	type II toxin-antitoxin system HipA family toxin	NA	NA	NA	NA	NA
WP_047122776.1|60474_60888_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010929597.1|61077_62019_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019248755.1|62442_63417_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929599.1|63473_64055_-	DJ-1/PfpI family protein	NA	NA	NA	NA	NA
WP_010929600.1|64067_64370_-	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA	NA
WP_029443770.1|64488_65547_-	2Fe-2S iron-sulfur cluster binding domain-containing protein	NA	NA	NA	NA	NA
WP_019247832.1|65581_66853_-	TRAP transporter large permease	NA	NA	NA	NA	NA
WP_010929603.1|67482_68664_-	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_005012808.1|69085_70036_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 2
NZ_CP011255	Bordetella pertussis strain I344 chromosome, complete genome	4111065	77634	123121	4111065	tRNA,transposase	Planktothrix_phage(25.0%)	44	NA	NA
WP_005012067.1|77634_78585_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_041166334.1|78659_79604_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929608.1|79600_81475_-	O-antigen biosynthesis protein WlbL	NA	A0A2P1ELS8	Moumouvirus	26.9	2.0e-23
WP_003807102.1|82822_83527_-	O-antigen biosynthesis protein WlbI	NA	NA	NA	NA	NA
WP_010929609.1|83523_84696_-	O-antigen biosynthesis protein WlbH	NA	NA	NA	NA	NA
WP_010929610.1|84891_85485_-	O-antigen biosynthesis protein WlbG	NA	NA	NA	NA	NA
WP_010929611.1|85481_86714_-	O-antigen biosynthesis protein WlbF	NA	NA	NA	NA	NA
WP_010929612.1|86731_87991_-	O-antigen biosynthesis protein WlbE	NA	NA	NA	NA	NA
WP_010929613.1|88014_89103_-	O-antigen biosynthesis protein WlbD	NA	A0A0N9R0B2	Chrysochromulina_ericina_virus	36.3	4.8e-46
WP_010929614.1|89110_90211_-	O-antigen biosynthesis protein WlbC	NA	A0A2K9L0G1	Tupanvirus	29.7	3.3e-31
WP_003807114.1|90214_90790_-	O-antigen biosynthesis protein WlbB	NA	NA	NA	NA	NA
WP_003807115.1|90793_91846_-	O-antigen biosynthesis protein WlbA	NA	NA	NA	NA	NA
WP_010929615.1|91976_92984_+	lipopolysaccharide heptosyltransferase I	NA	NA	NA	NA	NA
WP_010929616.1|92985_94272_+	3-deoxy-D-manno-octulosonic acid transferase	NA	NA	NA	NA	NA
WP_003807124.1|94288_94444_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929617.1|94468_95272_-	type III pantothenate kinase	NA	NA	NA	NA	NA
WP_010929618.1|95268_96135_-	biotin--[acetyl-CoA-carboxylase] ligase	NA	NA	NA	NA	NA
WP_010929619.1|96209_97340_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_003807131.1|97339_98179_+	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	32.4	9.1e-21
WP_010929620.1|99111_99714_+	membrane integrity-associated transporter subunit PqiC	NA	NA	NA	NA	NA
WP_010929621.1|99743_100397_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003807138.1|100529_101786_+	D-alanyl-D-alanine carboxypeptidase	NA	B6DZZ7	Stx2-converting_phage	40.5	6.2e-66
WP_010929622.1|101833_102733_+	D-amino acid aminotransferase	NA	NA	NA	NA	NA
WP_003818417.1|102808_103084_+	YbeD family protein	NA	NA	NA	NA	NA
WP_010929623.1|103091_103754_+	lipoyl(octanoyl) transferase LipB	NA	NA	NA	NA	NA
WP_003807146.1|103815_104817_+	lipoyl synthase	NA	NA	NA	NA	NA
WP_003807148.1|104831_105380_-	dTDP-4-dehydrorhamnose 3,5-epimerase	NA	A0A291LA62	Escherichia_phage	53.4	3.7e-47
WP_010929624.1|105437_106334_-	dTDP-4-dehydrorhamnose reductase	NA	NA	NA	NA	NA
WP_010929625.1|106330_107392_-	dTDP-glucose 4,6-dehydratase	NA	A0A1D7XFE8	Escherichia_phage	44.8	1.6e-78
WP_010929626.1|107427_108378_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929627.1|109277_110471_+	cystathionine beta-lyase	NA	NA	NA	NA	NA
WP_010929628.1|110552_111182_-	thiol:disulfide interchange protein DsbA/DsbL	NA	NA	NA	NA	NA
WP_010927242.1|111243_111927_-	SPOR domain-containing protein	NA	NA	NA	NA	NA
WP_023853376.1|111936_113619_-|tRNA	arginine--tRNA ligase	tRNA	NA	NA	NA	NA
WP_003815933.1|113906_114254_+	DUF1840 domain-containing protein	NA	NA	NA	NA	NA
WP_003815930.1|114344_114662_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931363.1|114944_115961_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003815929.1|116035_116836_-	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
WP_003815927.1|116832_117708_-	sugar ABC transporter permease	NA	NA	NA	NA	NA
WP_010929633.1|117718_119011_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929634.1|119053_120094_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.7	6.0e-22
WP_010929635.1|120199_121021_-	phosphodiesterase	NA	NA	NA	NA	NA
WP_005012067.1|121121_122072_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929853.1|122170_123121_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 3
NZ_CP011255	Bordetella pertussis strain I344 chromosome, complete genome	4111065	165938	304608	4111065	protease,tRNA,transposase	Klosneuvirus(10.53%)	116	NA	NA
WP_005015810.1|165938_166889_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929659.1|168332_169235_-	YgcG family protein	NA	NA	NA	NA	NA
WP_003815889.1|169212_169842_-	LemA family protein	NA	NA	NA	NA	NA
WP_010929660.1|170124_171555_+	DEAD/DEAH box helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	29.8	5.8e-44
WP_010929661.1|171588_172218_+	LysE family transporter	NA	NA	NA	NA	NA
WP_003815895.1|172266_173874_+	peptide chain release factor 3	NA	A0A2K9L6L3	Tupanvirus	37.8	9.3e-14
WP_010929663.1|173898_174582_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815898.1|174663_175140_-	bacterioferritin	NA	NA	NA	NA	NA
WP_010929765.1|175346_176297_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929664.1|177412_177940_+	META domain-containing protein	NA	NA	NA	NA	NA
WP_010929665.1|178031_178847_+	META and DUF4377 domain-containing protein	NA	NA	NA	NA	NA
WP_003808370.1|178907_179642_+	sulfurtransferase	NA	NA	NA	NA	NA
WP_010929666.1|179679_181758_-|tRNA	methionine--tRNA ligase	tRNA	A0A1V0SHR2	Klosneuvirus	23.6	1.5e-27
WP_003808374.1|182007_182280_-	hypothetical protein	NA	NA	NA	NA	NA
WP_033446322.1|182381_183467_+	iron-sulfur cluster carrier protein ApbC	NA	NA	NA	NA	NA
WP_010929668.1|183470_185375_+	BamA/TamA family outer membrane protein	NA	NA	NA	NA	NA
WP_024000654.1|185371_189010_+	translocation/assembly module TamB domain-containing protein	NA	NA	NA	NA	NA
WP_010929670.1|189070_189634_+	dCTP deaminase	NA	S5VM63	Pseudomonas_phage	75.3	2.6e-72
WP_003808385.1|189641_190064_-	VOC family protein	NA	NA	NA	NA	NA
WP_010929671.1|190091_190511_-	VOC family protein	NA	NA	NA	NA	NA
WP_076879599.1|190539_191013_-	GNAT family N-acetyltransferase	NA	Q9AZG4	Lactococcus_phage	31.1	2.2e-11
WP_003808391.1|191112_191610_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003808393.1|191764_194035_+	arginine/lysine/ornithine decarboxylase	NA	NA	NA	NA	NA
WP_010929672.1|194083_195316_+	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010929673.1|196468_197104_+	superoxide dismutase	NA	Q56AR7	Bacillus_thuringiensis_phage	73.8	2.8e-83
WP_010929674.1|197100_197994_+	ZIP family metal transporter	NA	NA	NA	NA	NA
WP_010929675.1|198388_199489_+	glycine cleavage system aminomethyltransferase GcvT	NA	NA	NA	NA	NA
WP_010929676.1|199570_199945_+	glycine cleavage system protein GcvH	NA	NA	NA	NA	NA
WP_010929677.1|200004_202869_+	aminomethyl-transferring glycine dehydrogenase	NA	E3SN07	Prochlorococcus_phage	51.4	1.2e-261
WP_010929678.1|203013_203754_-	FadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929679.1|203823_205035_+	CoA transferase	NA	NA	NA	NA	NA
WP_010929680.1|205063_206032_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931070.1|206645_207596_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929699.1|207752_208076_+	phosphate starvation-inducible protein	NA	NA	NA	NA	NA
WP_023853200.1|208180_209221_-	cyclase family protein	NA	NA	NA	NA	NA
WP_010929697.1|209226_210006_-	3-oxoadipate enol-lactonase	NA	NA	NA	NA	NA
WP_003807672.1|210051_210348_-	YciI family protein	NA	NA	NA	NA	NA
WP_003807674.1|210373_210649_-	muconolactone Delta-isomerase	NA	NA	NA	NA	NA
WP_003819086.1|210705_211350_-	CoA transferase subunit B	NA	NA	NA	NA	NA
WP_010929696.1|211349_212036_-	3-oxoacid CoA-transferase subunit A	NA	NA	NA	NA	NA
WP_010929695.1|212165_213017_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929694.1|213067_213793_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010929693.1|213824_215174_-	short-chain fatty acid transporter	NA	NA	NA	NA	NA
WP_010929692.1|215285_216218_-	3-hydroxyacyl-CoA dehydrogenase family protein	NA	NA	NA	NA	NA
WP_033446404.1|216675_219471_-|protease	serine protease autotransporter SphB1	protease	NA	NA	NA	NA
WP_010929690.1|220064_223007_-	phosphoenolpyruvate carboxylase	NA	NA	NA	NA	NA
WP_010929689.1|223078_223798_+	7-cyano-7-deazaguanine synthase QueC	NA	A0A0A0RPC6	Escherichia_phage	43.9	8.0e-50
WP_010929688.1|223836_224385_-	N-acetyltransferase	NA	A0A2H4J136	uncultured_Caudovirales_phage	41.7	1.2e-21
WP_010929687.1|224539_225439_+	virginiamycin B lyase	NA	NA	NA	NA	NA
WP_005012808.1|225463_226414_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003818947.1|226632_227328_+	FadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247308.1|227344_228757_+	FAD-binding oxidoreductase	NA	NA	NA	NA	NA
WP_010929684.1|228869_230300_+	aldehyde dehydrogenase family protein	NA	NA	NA	NA	NA
WP_010929683.1|230341_232255_-	phosphomethylpyrimidine synthase ThiC	NA	NA	NA	NA	NA
WP_010929682.1|232573_233140_+	preprotein translocase subunit SecD	NA	NA	NA	NA	NA
WP_010929681.1|233230_234232_+	HindIII family type II restriction endonuclease	NA	NA	NA	NA	NA
WP_005012067.1|234346_235297_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010927663.1|235383_236334_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930742.1|236330_237281_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929700.1|237379_238177_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_003814363.1|239126_239537_+	carboxymuconolactone decarboxylase family protein	NA	NA	NA	NA	NA
WP_003814358.1|240558_241302_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814356.1|241345_242389_-	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003814355.1|242559_244662_+	TRAP transporter large permease subunit	NA	NA	NA	NA	NA
WP_003814351.1|246072_247029_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929701.1|247047_247539_-	2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase	NA	NA	NA	NA	NA
WP_010929702.1|247535_248891_-	polynucleotide adenylyltransferase PcnB	NA	A0A1B1IVF3	uncultured_Mediterranean_phage	36.8	3.4e-25
WP_010929703.1|248891_249590_-	HAD-IB family hydrolase	NA	NA	NA	NA	NA
WP_010929704.1|249586_250288_-	DnaA regulatory inactivator Hda	NA	NA	NA	NA	NA
WP_003814339.1|250540_251590_+	phosphoribosylformylglycinamidine cyclo-ligase	NA	Q58MH8	Prochlorococcus_phage	43.6	5.6e-68
WP_003814337.1|251695_252637_-|tRNA	tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA	tRNA	NA	NA	NA	NA
WP_023997118.1|252633_254523_-	DNA mismatch repair endonuclease MutL	NA	A0A1B2LRQ5	Wolbachia_phage	33.1	1.3e-78
WP_003814332.1|254609_255248_+	VTT domain-containing protein	NA	NA	NA	NA	NA
WP_019247543.1|255390_256776_-	N-acetylmuramoyl-L-alanine amidase	NA	A0A2H4JCM7	uncultured_Caudovirales_phage	30.3	4.5e-17
WP_010929706.1|256706_257243_-|tRNA	bifunctional alanine racemase/tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE	tRNA	NA	NA	NA	NA
WP_010929707.1|257394_258786_+	class II fumarate hydratase	NA	NA	NA	NA	NA
WP_010929708.1|258802_259783_-	AEC family transporter	NA	NA	NA	NA	NA
WP_003814324.1|259918_260902_+	tripartite tricarboxylate transporter substrate binding protein BugE	NA	NA	NA	NA	NA
WP_010929709.1|260966_261866_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814321.1|261972_263727_+	gamma-glutamyltransferase	NA	NA	NA	NA	NA
WP_010929710.1|263734_264859_-	CoA transferase	NA	NA	NA	NA	NA
WP_050818140.1|264872_265850_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_005012067.1|266580_267531_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929712.1|268090_268636_+	GbsR/MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929713.1|268719_270339_+	cytochrome d ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
WP_004567834.1|270354_271509_+	cytochrome d ubiquinol oxidase subunit II	NA	NA	NA	NA	NA
WP_003817696.1|271522_271648_+	cytochrome bd-I oxidase subunit CydX	NA	NA	NA	NA	NA
WP_010929714.1|271644_273396_+	thiol reductant ABC exporter subunit CydD	NA	W8CYL7	Bacillus_phage	23.8	3.4e-09
WP_010929715.1|273392_275072_+	thiol reductant ABC exporter subunit CydC	NA	W8CYL7	Bacillus_phage	27.6	3.6e-16
WP_005013747.1|275179_276130_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929716.1|276183_276732_+	adenine phosphoribosyltransferase	NA	A0A1V0SKE5	Klosneuvirus	43.1	1.3e-28
WP_010929717.1|277874_278153_+	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|279196_280147_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929718.1|280424_280586_+	DUF4224 domain-containing protein	NA	NA	NA	NA	NA
WP_010929719.1|280593_280734_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815821.1|281252_281702_-|protease	ClpXP protease specificity-enhancing factor	protease	NA	NA	NA	NA
WP_003815819.1|281711_282323_-	glutathione S-transferase N-terminal domain-containing protein	NA	NA	NA	NA	NA
WP_019247426.1|282481_283336_-	cytochrome c1	NA	NA	NA	NA	NA
WP_005013747.1|283485_284436_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003815815.1|285851_286493_-	ubiquinol-cytochrome c reductase iron-sulfur subunit	NA	NA	NA	NA	NA
WP_010929721.1|286632_287091_+	large conductance mechanosensitive channel protein MscL	NA	NA	NA	NA	NA
WP_010927226.1|287115_287892_-	Nif3-like dinuclear metal center hexameric protein	NA	NA	NA	NA	NA
WP_014906092.1|287945_289082_+	trypsin-like peptidase domain-containing protein	NA	W5SAB9	Pithovirus	31.2	1.2e-07
WP_005015810.1|289078_290029_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003807705.1|290127_290754_-	FMN-binding negative transcriptional regulator	NA	NA	NA	NA	NA
WP_003807706.1|290776_291703_-	glyoxylate/hydroxypyruvate reductase A	NA	NA	NA	NA	NA
WP_003819100.1|291711_293298_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929723.1|293294_294299_-	alpha/beta hydrolase	NA	A0A2L2DMU8	Acanthamoeba_polyphaga_mimivirus	31.5	7.5e-30
WP_003807710.1|294498_295359_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010929724.1|295390_296392_-	2-isopropylmalate synthase	NA	NA	NA	NA	NA
WP_003819104.1|296462_297272_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003819105.1|297349_299209_+	dihydroxy-acid dehydratase	NA	NA	NA	NA	NA
WP_010929725.1|299337_300540_-	MFS transporter	NA	NA	NA	NA	NA
WP_004566082.1|300653_301535_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_004566083.1|303037_303598_-	5'-3'-deoxyribonucleotidase	NA	A0A1E1EUN3	Acanthamoeba_castellanii_mimivirus	30.8	3.2e-14
WP_005013747.1|303657_304608_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 4
NZ_CP011255	Bordetella pertussis strain I344 chromosome, complete genome	4111065	393952	451461	4111065	transposase	Orpheovirus(14.29%)	50	NA	NA
WP_005012067.1|393952_394903_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010927231.1|395039_395957_+	reductase	NA	NA	NA	NA	NA
WP_003815842.1|395953_396202_+	glutaredoxin family protein	NA	NA	NA	NA	NA
WP_003815840.1|396198_397404_+	CoA transferase	NA	NA	NA	NA	NA
WP_014486045.1|397476_398472_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_014486046.1|398494_399715_-	CoA transferase	NA	NA	NA	NA	NA
WP_014486047.1|399711_400356_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929483.1|402086_402896_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_014486048.1|403200_404154_+	thioredoxin-disulfide reductase	NA	A0A2I2L5E1	Orpheovirus	42.5	5.6e-59
WP_014486049.1|404252_405236_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014486050.1|405162_405864_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_014486051.1|405912_406683_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_019247259.1|406679_407858_-	CoA transferase	NA	NA	NA	NA	NA
WP_014486052.1|408025_409732_-	thiamine pyrophosphate-requiring protein	NA	NA	NA	NA	NA
WP_014486053.1|409728_410625_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_014486054.1|410665_412255_-	rhodanese homology domain-containing protein	NA	NA	NA	NA	NA
WP_003807867.1|412304_413297_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003807865.1|413365_413965_-	hypothetical protein	NA	NA	NA	NA	NA
WP_014486055.1|414425_415406_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929577.1|415481_416432_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_047122777.1|416520_417435_+	DMT family transporter	NA	NA	NA	NA	NA
WP_010929782.1|417431_418091_+	LysE family translocator	NA	NA	NA	NA	NA
WP_003814709.1|418180_419104_+	alpha/beta fold hydrolase	NA	A0A1C9C5K3	Heterosigma_akashiwo_virus	27.2	4.8e-07
WP_010929783.1|419109_419565_-	multidrug/biocide efflux PACE transporter	NA	NA	NA	NA	NA
WP_010929784.1|419561_420665_-	ChbG/HpnK family deacetylase	NA	NA	NA	NA	NA
WP_157734656.1|420623_420893_+	GtrA family protein	NA	NA	NA	NA	NA
WP_010927086.1|420852_422472_-	glycosyltransferase family 39 protein	NA	NA	NA	NA	NA
WP_003814720.1|422468_423527_-	glycosyltransferase family 2 protein	NA	I1TED8	Salmonella_phage	40.5	2.8e-59
WP_033446199.1|423656_424151_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_022997984.1|424243_425221_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929785.1|425416_426622_+	sodium/glutamate symporter	NA	NA	NA	NA	NA
WP_010929786.1|426618_428130_+	TAXI family TRAP transporter solute-binding subunit	NA	NA	NA	NA	NA
WP_003814726.1|428145_429459_-	short-chain fatty acid transporter	NA	NA	NA	NA	NA
WP_003814728.1|429649_429829_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003814730.1|430238_430973_-	DNA polymerase III subunit epsilon	NA	A0A1X9SH08	Bradyrhizobium_phage	43.8	1.4e-41
WP_010929577.1|433417_434368_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247421.1|434499_434898_-	GTP-binding protein	NA	E4ZFJ7	Streptococcus_phage	44.3	9.0e-19
WP_003814701.1|435308_435779_-	universal stress protein	NA	NA	NA	NA	NA
WP_003820700.1|435867_436212_-	TIGR01244 family phosphatase	NA	NA	NA	NA	NA
WP_010929788.1|436311_437712_-	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
WP_010929789.1|439500_440019_-	MgtC/SapB family protein	NA	G3MA03	Bacillus_virus	38.9	2.1e-12
WP_003814694.1|440129_440885_+	TerC family protein	NA	A0A0R6PEZ3	Moraxella_phage	40.8	2.9e-42
WP_003814691.1|441080_442313_+	CoA transferase	NA	NA	NA	NA	NA
WP_010929791.1|442305_443091_+	crotonase/enoyl-CoA hydratase family protein	NA	NA	NA	NA	NA
WP_003814685.1|443157_444129_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003814681.1|444139_445117_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247419.1|445242_446415_+	acyl-CoA dehydrogenase family protein	NA	NA	NA	NA	NA
WP_010929793.1|446441_447470_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_003814674.1|447535_448729_+	acetyl-CoA C-acyltransferase	NA	NA	NA	NA	NA
WP_005012067.1|450510_451461_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 5
NZ_CP011255	Bordetella pertussis strain I344 chromosome, complete genome	4111065	593515	654703	4111065	protease,transposase	uncultured_Mediterranean_phage(40.0%)	55	NA	NA
WP_005013747.1|593515_594466_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023998122.1|594962_595832_+	phosphonate ABC transporter, permease protein PhnE	NA	NA	NA	NA	NA
WP_010931496.1|595828_596650_+	phosphonate ABC transporter, permease protein PhnE	NA	NA	NA	NA	NA
WP_019247235.1|596846_597338_+	CYTH domain-containing protein	NA	NA	NA	NA	NA
WP_019247236.1|597356_598430_+	CHAD domain-containing protein	NA	NA	NA	NA	NA
WP_023853086.1|598476_599580_-	signal recognition particle-docking protein FtsY	NA	NA	NA	NA	NA
WP_003808577.1|599655_600276_+	16S rRNA (guanine(966)-N(2))-methyltransferase RsmD	NA	NA	NA	NA	NA
WP_003808574.1|600296_600806_+	pantetheine-phosphate adenylyltransferase	NA	A0A1B1IVQ3	uncultured_Mediterranean_phage	42.1	1.2e-28
WP_003808570.1|600860_601112_+	YfhL family 4Fe-4S dicluster ferredoxin	NA	A0A1B1IWY9	uncultured_Mediterranean_phage	53.4	1.6e-18
WP_010931494.1|601175_602309_+	benzoate/H(+) symporter BenE family transporter	NA	NA	NA	NA	NA
WP_003808567.1|602316_602703_-	MOSC N-terminal beta barrel domain-containing protein	NA	NA	NA	NA	NA
WP_010931493.1|602699_605219_-	AsmA family protein	NA	NA	NA	NA	NA
WP_003808563.1|605647_605986_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003808562.1|605982_606489_+	SRPBCC family protein	NA	NA	NA	NA	NA
WP_010931492.1|606550_607351_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931491.1|607461_608403_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931490.1|608496_610032_-	M81 family metallopeptidase	NA	NA	NA	NA	NA
WP_010931489.1|611711_613562_-	dipeptide ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	29.2	1.6e-17
WP_003808549.1|613565_614399_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931488.1|614398_615340_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931487.1|615591_616563_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931486.1|616704_618993_+	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
WP_003808542.1|619299_620208_+	TauD/TfdA family dioxygenase	NA	NA	NA	NA	NA
WP_010931485.1|620262_621228_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931484.1|621302_622964_+	thiamine pyrophosphate-binding protein	NA	NA	NA	NA	NA
WP_010931483.1|623035_623746_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|623894_624845_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814152.1|625543_625927_+	membrane protein	NA	NA	NA	NA	NA
WP_010927005.1|625984_626587_+	DUF2946 family protein	NA	NA	NA	NA	NA
WP_003820995.1|626604_627006_-	DoxX family protein	NA	NA	NA	NA	NA
WP_003814158.1|627139_628033_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931481.1|628029_628611_+	NUDIX hydrolase	NA	NA	NA	NA	NA
WP_003814165.1|629405_630140_+	arginyltransferase	NA	NA	NA	NA	NA
WP_010931480.1|630180_631230_+	quinone-dependent dihydroorotate dehydrogenase	NA	NA	NA	NA	NA
WP_003814172.1|631377_631956_-	TIGR01841 family phasin	NA	NA	NA	NA	NA
WP_010931479.1|632342_633320_+	tripartite tricarboxylate transporter substrate binding protein BugD	NA	NA	NA	NA	NA
WP_010931478.1|633413_637808_-	dermonecrotic toxin	NA	NA	NA	NA	NA
WP_003814178.1|638008_638857_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931477.1|639015_639828_-	competence/damage-inducible protein A	NA	NA	NA	NA	NA
WP_005015810.1|639883_640834_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931453.1|640932_641733_-	EI24 domain-containing protein	NA	NA	NA	NA	NA
WP_003814185.1|641794_642178_+	thioredoxin family protein	NA	NA	NA	NA	NA
WP_010931454.1|642189_643623_-	DEAD/DEAH box helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	34.4	1.5e-52
WP_003814188.1|643829_644159_-	AzlD domain-containing protein	NA	NA	NA	NA	NA
WP_010931455.1|644161_644911_-	AzlC family ABC transporter permease	NA	NA	NA	NA	NA
WP_010931456.1|645093_646014_+	branched-chain amino acid transaminase	NA	NA	NA	NA	NA
WP_003814195.1|646060_646273_+	zinc-finger domain-containing protein	NA	NA	NA	NA	NA
WP_010931457.1|646295_646718_+	nuclear transport factor 2 family protein	NA	NA	NA	NA	NA
WP_010931458.1|646734_647835_+	alpha/beta fold hydrolase	NA	NA	NA	NA	NA
WP_010931459.1|647931_649449_-|protease	M48 family metalloprotease	protease	NA	NA	NA	NA
WP_003814203.1|649524_650364_+	UTP--glucose-1-phosphate uridylyltransferase GalU	NA	A0A127AW70	Bacillus_phage	48.9	1.1e-66
WP_003814205.1|650385_651267_-	cytochrome c oxidase assembly protein	NA	NA	NA	NA	NA
WP_003814206.1|651348_652443_-	porin	NA	NA	NA	NA	NA
WP_076879617.1|652736_653687_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_041166340.1|653761_654703_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 6
NZ_CP011255	Bordetella pertussis strain I344 chromosome, complete genome	4111065	660027	707267	4111065	tail,tRNA,terminase,transposase	uncultured_Caudovirales_phage(18.18%)	50	NA	NA
WP_023995141.1|660027_661053_+|tRNA	tRNA dihydrouridine synthase DusB	tRNA	NA	NA	NA	NA
WP_003814221.1|661093_661333_+	DNA-binding protein	NA	NA	NA	NA	NA
WP_010931464.1|661402_662992_+	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase	NA	Q58MG4	Prochlorococcus_phage	47.2	8.7e-65
WP_010931465.1|662991_663540_+	crossover junction endodeoxyribonuclease RuvC	NA	NA	NA	NA	NA
WP_003814226.1|663620_664193_+	Holliday junction branch migration protein RuvA	NA	NA	NA	NA	NA
WP_010927008.1|664211_665123_-	complex I NDUFA9 subunit family protein	NA	NA	NA	NA	NA
WP_003814230.1|665196_666165_-	threo-3-hydroxy-L-aspartate ammonia-lyase	NA	NA	NA	NA	NA
WP_010931466.1|666287_667361_+	Holliday junction branch migration DNA helicase RuvB	NA	A0A127AWE7	Bacillus_phage	25.7	2.3e-08
WP_010931467.1|667365_669186_-	DNA helicase RecQ	NA	L7RCS0	Acanthamoeba_polyphaga_moumouvirus	35.3	3.1e-74
WP_005015810.1|669262_670213_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_033446132.1|670301_670637_+	ASCH domain-containing protein	NA	NA	NA	NA	NA
WP_003819076.1|670770_671421_+	carbonic anhydrase	NA	NA	NA	NA	NA
WP_010931468.1|671442_672861_-	amidase	NA	NA	NA	NA	NA
WP_019248554.1|672930_673686_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019247734.1|673654_674413_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010931471.1|674423_675305_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010931472.1|675321_676029_+	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	25.4	8.2e-07
WP_010931473.1|676031_676790_+	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	24.4	4.4e-14
WP_010931474.1|676999_678742_+	nitrite/sulfite reductase	NA	NA	NA	NA	NA
WP_010925795.1|678734_679259_+	DUF934 domain-containing protein	NA	NA	NA	NA	NA
WP_050818153.1|679298_680093_-	dioxygenase	NA	NA	NA	NA	NA
WP_019248926.1|680260_681334_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|681432_682383_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247378.1|682634_682841_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931451.1|682912_683524_-	S24 family peptidase	NA	NA	NA	NA	NA
WP_023853179.1|684078_684330_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_161633094.1|684322_685012_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|685268_686219_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_033469562.1|686858_687344_+|terminase	terminase	terminase	C7U0W1	Enterobacteria_phage	61.5	7.3e-39
WP_010931447.1|687330_688608_+|terminase	terminase large subunit	terminase	A0A1B1P9C9	Acinetobacter_phage	64.7	2.4e-150
WP_010931446.1|688610_690029_+	DUF4055 domain-containing protein	NA	R9TF43	Synechococcus_phage	42.1	2.2e-99
WP_010931445.1|690057_691113_+	hypothetical protein	NA	A0A0H5BBX3	Pseudomonas_phage	50.6	2.6e-97
WP_010931444.1|691118_691361_+	hypothetical protein	NA	A0A0H5AUE5	Pseudomonas_phage	53.2	5.6e-16
WP_010931443.1|691483_692086_+	hypothetical protein	NA	R9TF81	Synechococcus_phage	43.6	7.9e-27
WP_005012808.1|693563_694514_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931442.1|695188_695440_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247789.1|695502_695985_+	hypothetical protein	NA	A0A2H4JE38	uncultured_Caudovirales_phage	37.1	1.8e-13
WP_010931440.1|695986_696187_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931439.1|696186_696582_+	hypothetical protein	NA	A0A2D2W284	Stenotrophomonas_phage	35.0	7.8e-07
WP_010931438.1|696578_696977_+	hypothetical protein	NA	I6PCW1	Cronobacter_phage	38.0	4.2e-16
WP_010931437.1|696973_697396_+	DUF4128 domain-containing protein	NA	NA	NA	NA	NA
WP_010931436.1|697403_697904_+	HNH endonuclease	NA	A0A1I9SEX5	Klebsiella_phage	45.1	4.4e-31
WP_010931435.1|698158_698677_+|tail	phage tail protein	tail	A0A1S5R1H0	Pseudomonas_phage	38.3	5.4e-24
WP_003813412.1|698686_699016_+|tail	phage tail assembly chaperone	tail	A0A2H4J121	uncultured_Caudovirales_phage	44.0	2.9e-15
WP_010931434.1|699033_699324_+	DUF1799 domain-containing protein	NA	A0A2H4JBP7	uncultured_Caudovirales_phage	45.2	3.7e-14
WP_010931433.1|699349_701962_+|tail	phage tail tape measure protein	tail	A0A2H4J107	uncultured_Caudovirales_phage	38.6	4.9e-105
WP_010931432.1|701971_702331_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931431.1|702398_702932_+	DUF1833 family protein	NA	A5A3Q9	Burkholderia_phage	46.9	1.1e-40
WP_010931430.1|702928_703318_+	C40 family peptidase	NA	A0A0G3EYJ9	Achromobacter_phage	50.0	3.0e-35
WP_010931429.1|703310_707267_+	DUF1983 domain-containing protein	NA	A0A0B5A1N2	Achromobacter_phage	40.8	3.9e-215
>prophage 7
NZ_CP011255	Bordetella pertussis strain I344 chromosome, complete genome	4111065	713433	767362	4111065	tRNA,transposase	Planktothrix_phage(50.0%)	45	NA	NA
WP_003814636.1|713433_715164_+|tRNA	proline--tRNA ligase	tRNA	A0A2K9L3R9	Tupanvirus	29.4	4.6e-11
WP_010931419.1|715216_715645_+	tol-pal system-associated acyl-CoA thioesterase	NA	NA	NA	NA	NA
WP_003814641.1|715647_716328_+	protein TolQ	NA	NA	NA	NA	NA
WP_003814643.1|716327_716786_+	protein TolR	NA	NA	NA	NA	NA
WP_010931417.1|717812_719129_+	Tol-Pal system protein TolB	NA	NA	NA	NA	NA
WP_003814650.1|719160_719658_+	peptidoglycan-associated lipoprotein Pal	NA	NA	NA	NA	NA
WP_003814652.1|719744_720434_+	tol-pal system protein YbgF	NA	NA	NA	NA	NA
WP_010931416.1|720433_721483_+	iron ABC transporter permease	NA	NA	NA	NA	NA
WP_003814657.1|721479_722274_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.6	2.4e-15
WP_019247923.1|722442_722793_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247922.1|722768_723326_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929584.1|724455_725406_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929184.1|727543_728773_+	spore maturation protein	NA	NA	NA	NA	NA
WP_003814419.1|728775_730218_-	pyruvate kinase	NA	NA	NA	NA	NA
WP_010931414.1|730322_731468_+	glycerate kinase	NA	W6LM47	Streptococcus_phage	42.2	1.7e-41
WP_010931413.1|731499_732297_-	16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA	NA	NA	NA	NA	NA
WP_010931412.1|732321_733881_-	chaperone SurA	NA	NA	NA	NA	NA
WP_010931411.1|733877_736250_-	LPS-assembly protein LptD	NA	NA	NA	NA	NA
WP_010931410.1|736359_737463_+	phosphotransferase	NA	NA	NA	NA	NA
WP_010931409.1|737462_738155_+	nucleotidyltransferase family protein	NA	NA	NA	NA	NA
WP_003814436.1|738298_739000_+	membrane protein	NA	NA	NA	NA	NA
WP_003814437.1|738984_739362_-	4a-hydroxytetrahydrobiopterin dehydratase	NA	NA	NA	NA	NA
WP_005012067.1|740093_741044_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814441.1|741203_742076_-	oxaloacetate decarboxylase	NA	NA	NA	NA	NA
WP_003814443.1|742416_742635_+	DUF1059 domain-containing protein	NA	NA	NA	NA	NA
WP_019247242.1|742674_744054_-	aminotransferase class III-fold pyridoxal phosphate-dependent enzyme	NA	NA	NA	NA	NA
WP_010929976.1|744095_745493_-	amidase family protein	NA	NA	NA	NA	NA
WP_010927038.1|745532_747185_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.8	6.0e-16
WP_010929977.1|747188_748073_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010929978.1|748072_749014_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010929979.1|749092_750712_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929980.1|750878_751694_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814459.1|751761_752331_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005013747.1|752331_753282_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814461.1|753936_755034_+	carboxynorspermidine decarboxylase	NA	NA	NA	NA	NA
WP_003814462.1|755067_756333_+	saccharopine dehydrogenase family protein	NA	NA	NA	NA	NA
WP_010929591.1|756490_757441_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929982.1|757684_758275_+	polyisoprenoid-binding protein	NA	NA	NA	NA	NA
WP_010929983.1|758290_760735_-	TonB-dependent siderophore receptor	NA	NA	NA	NA	NA
WP_003814467.1|760854_761826_-	FecR family protein	NA	NA	NA	NA	NA
WP_023852739.1|761957_762482_+	sigma-70 family RNA polymerase sigma factor	NA	NA	NA	NA	NA
WP_005012067.1|762441_763392_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929984.1|763613_765809_-	DUF1156 domain-containing protein	NA	NA	NA	NA	NA
WP_010929985.1|765881_766310_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_005012808.1|766411_767362_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 8
NZ_CP011255	Bordetella pertussis strain I344 chromosome, complete genome	4111065	818955	890968	4111065	holin,transposase	Acinetobacter_phage(20.0%)	60	NA	NA
WP_014486111.1|818955_819906_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930050.1|820004_820661_-	DUF4136 domain-containing protein	NA	NA	NA	NA	NA
WP_010930049.1|820808_823517_+	aminopeptidase N	NA	A0A0P0IY26	Acinetobacter_phage	24.0	2.8e-15
WP_003813068.1|823526_824546_+	class 1 fructose-bisphosphatase	NA	A0A1V0SKX4	Klosneuvirus	35.7	1.5e-49
WP_010930048.1|824542_825493_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003813893.1|825591_826080_-	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	NA	NA	NA	NA	NA
WP_003813895.1|826076_826760_-	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	NA	NA	NA	NA	NA
WP_010926959.1|826789_830245_+	transcription-repair coupling factor	NA	NA	NA	NA	NA
WP_010930046.1|830280_831141_+	phosphoserine phosphatase SerB	NA	NA	NA	NA	NA
WP_010930045.1|831269_832187_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930044.1|832324_833305_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003813904.1|833364_835155_+	acetolactate synthase large subunit	NA	A0A0P0YLY7	Yellowstone_lake_phycodnavirus	26.1	2.0e-25
WP_010930042.1|835151_835928_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930041.1|835937_836456_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_003813909.1|836568_838839_-	TonB-dependent siderophore receptor	NA	NA	NA	NA	NA
WP_010930039.1|839050_841282_-	TonB-dependent siderophore receptor	NA	NA	NA	NA	NA
WP_003813915.1|841582_841912_-	DUF2818 family protein	NA	NA	NA	NA	NA
WP_003813916.1|841928_843413_-	NADH-quinone oxidoreductase subunit NuoN	NA	NA	NA	NA	NA
WP_019247436.1|843423_844926_-	NADH-quinone oxidoreductase subunit M	NA	NA	NA	NA	NA
WP_010930037.1|844922_846935_-	NADH-quinone oxidoreductase subunit L	NA	NA	NA	NA	NA
WP_003813920.1|846952_847261_-	NADH-quinone oxidoreductase subunit NuoK	NA	NA	NA	NA	NA
WP_003813921.1|847257_847905_-	NADH-quinone oxidoreductase subunit J	NA	NA	NA	NA	NA
WP_003813924.1|847922_848411_-	NADH-quinone oxidoreductase subunit NuoI	NA	NA	NA	NA	NA
WP_003813926.1|848432_849506_-	NADH-quinone oxidoreductase subunit NuoH	NA	NA	NA	NA	NA
WP_010930036.1|849505_851833_-	NADH-quinone oxidoreductase subunit G	NA	NA	NA	NA	NA
WP_003813930.1|851848_853216_-	NADH-quinone oxidoreductase subunit NuoF	NA	NA	NA	NA	NA
WP_003813932.1|853212_853707_-	NADH-quinone oxidoreductase subunit NuoE	NA	NA	NA	NA	NA
WP_024000900.1|853752_855009_-	NADH-quinone oxidoreductase subunit D	NA	NA	NA	NA	NA
WP_010926963.1|855011_855635_-	NADH-quinone oxidoreductase subunit C	NA	NA	NA	NA	NA
WP_003813941.1|855709_856186_-	NADH-quinone oxidoreductase subunit B	NA	NA	NA	NA	NA
WP_003813943.1|856222_856582_-	NADH-quinone oxidoreductase subunit A	NA	NA	NA	NA	NA
WP_010930034.1|856770_857928_-	porin	NA	NA	NA	NA	NA
WP_005012067.1|858240_859191_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247352.1|859208_859763_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003813949.1|859764_860199_+	PaaI family thioesterase	NA	NA	NA	NA	NA
WP_003813951.1|860195_860630_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003813952.1|860613_861417_-	phosphatase PAP2 family protein	NA	NA	NA	NA	NA
WP_003813954.1|861433_862249_-	metallophosphoesterase	NA	NA	NA	NA	NA
WP_020699608.1|862245_863061_-	diacylglycerol kinase	NA	NA	NA	NA	NA
WP_010930033.1|863207_863909_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003813960.1|863936_865895_-|holin	choline BCCT transporter BetT	holin	A0A2I7QNT1	Vibrio_phage	30.3	8.0e-28
WP_005013747.1|865977_866928_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930032.1|867148_867817_+	transcriptional regulator	NA	NA	NA	NA	NA
WP_010930031.1|867940_869047_+	efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
WP_010930030.1|869059_872173_+	MexW/MexI family multidrug efflux RND transporter permease subunit	NA	S5VTK5	Leptospira_phage	21.5	4.5e-57
WP_010930029.1|872169_873663_+	efflux transporter outer membrane subunit	NA	NA	NA	NA	NA
WP_010926969.1|873677_874349_+	transcriptional regulator	NA	NA	NA	NA	NA
WP_003813974.1|874392_874887_-	azurin	NA	NA	NA	NA	NA
WP_010930027.1|875027_875675_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_023853163.1|875778_877827_+	hydantoinase/oxoprolinase family protein	NA	NA	NA	NA	NA
WP_010930025.1|877823_879836_+	hydantoinase B/oxoprolinase family protein	NA	NA	NA	NA	NA
WP_010930024.1|879861_881196_+	FAD-binding oxidoreductase	NA	NA	NA	NA	NA
WP_003813981.1|881304_882297_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003813982.1|882363_884448_-	rhodanese-like domain-containing protein	NA	NA	NA	NA	NA
WP_010930023.1|884472_885444_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930022.1|885572_886604_-	succinylglutamate desuccinylase/aspartoacylase family protein	NA	NA	NA	NA	NA
WP_010930021.1|886607_887759_-	cystathionine beta-lyase	NA	NA	NA	NA	NA
WP_076879542.1|887929_888853_+	transcriptional regulator LrhA	NA	NA	NA	NA	NA
WP_003813987.1|888930_889755_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010931561.1|889951_890968_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
>prophage 9
NZ_CP011255	Bordetella pertussis strain I344 chromosome, complete genome	4111065	898602	964605	4111065	holin,transposase	Bacillus_phage(28.57%)	55	NA	NA
WP_010930018.1|898602_900834_-|holin	choline BCCT transporter BetT	holin	NA	NA	NA	NA
WP_010930017.1|901621_902068_-	preprotein translocase subunit SecG	NA	NA	NA	NA	NA
WP_003813996.1|902089_902836_-	triose-phosphate isomerase	NA	NA	NA	NA	NA
WP_003813997.1|902979_903957_-	NAD(P)H-quinone oxidoreductase	NA	NA	NA	NA	NA
WP_010930016.1|904590_905202_+	PIN domain-containing protein	NA	K4HZX4	Acidithiobacillus_phage	32.5	3.3e-12
WP_003813999.1|905195_906413_-	threonine ammonia-lyase	NA	NA	NA	NA	NA
WP_005013747.1|906553_907504_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814000.1|907500_908220_-	lipoprotein	NA	NA	NA	NA	NA
WP_003821234.1|908340_910500_-	polyribonucleotide nucleotidyltransferase	NA	NA	NA	NA	NA
WP_003814002.1|910590_910860_-	30S ribosomal protein S15	NA	NA	NA	NA	NA
WP_003814003.1|911153_911681_+	lipoprotein	NA	NA	NA	NA	NA
WP_003814004.1|911699_912479_-	CDP-diacylglycerol--serine O-phosphatidyltransferase	NA	NA	NA	NA	NA
WP_010930015.1|912646_913663_-	ketol-acid reductoisomerase	NA	NA	NA	NA	NA
WP_003814006.1|913735_914227_-	acetolactate synthase small subunit	NA	NA	NA	NA	NA
WP_003814007.1|914237_915953_-	acetolactate synthase 3 catalytic subunit	NA	A0A0P0CDR3	Ostreococcus_lucimarinus_virus	30.3	3.1e-60
WP_005012067.1|917116_918067_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930051.1|918063_919896_-	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	26.4	1.3e-27
WP_010930052.1|920294_920954_+	thiopurine S-methyltransferase	NA	NA	NA	NA	NA
WP_023852837.1|921047_921194_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003809770.1|921302_921470_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930054.1|921481_922162_-	DUF3313 domain-containing protein	NA	NA	NA	NA	NA
WP_010930055.1|922443_923160_+	flagellar brake protein	NA	NA	NA	NA	NA
WP_010930056.1|923174_924476_-	phospholipase A	NA	NA	NA	NA	NA
WP_010930057.1|929740_931093_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_004568140.1|931121_931643_+	acetyl-CoA carboxylase biotin carboxyl carrier protein	NA	NA	NA	NA	NA
WP_003819989.1|931639_933094_+	carboxylase	NA	NA	NA	NA	NA
WP_023852826.1|933128_933377_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247557.1|933482_934358_+	amidohydrolase	NA	NA	NA	NA	NA
WP_010930060.1|934383_935439_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930061.1|935451_936243_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930062.1|936275_937646_+	acetyl-CoA carboxylase biotin carboxylase subunit	NA	NA	NA	NA	NA
WP_005012067.1|938822_939773_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930064.1|939825_940047_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003810832.1|940206_940419_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003810835.1|940538_941657_+	mannose-6-phosphate isomerase	NA	NA	NA	NA	NA
WP_003810839.1|942162_942414_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930066.1|942525_943476_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003810840.1|943472_943856_-	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA	NA
WP_023852913.1|943910_945725_-	ABC transporter ATP-binding protein/permease	NA	W8CYL7	Bacillus_phage	27.9	5.7e-44
WP_010930068.1|945874_946702_+	aldo/keto reductase	NA	A0A2H4PQR8	Staphylococcus_phage	47.4	1.7e-67
WP_010930069.1|946747_947728_+	aldo/keto reductase	NA	NA	NA	NA	NA
WP_003810850.1|947724_947937_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003810851.1|947933_949115_-	PepSY domain-containing protein	NA	NA	NA	NA	NA
WP_010930070.1|949278_950013_+	metallophosphoesterase	NA	A0A2H4J0P0	uncultured_Caudovirales_phage	49.6	3.8e-63
WP_010930071.1|950014_952627_-	PBP1A family penicillin-binding protein	NA	NA	NA	NA	NA
WP_003810859.1|952762_954676_-	S9 family peptidase	NA	NA	NA	NA	NA
WP_010930072.1|955291_955702_-	PaaI family thioesterase	NA	NA	NA	NA	NA
WP_003810865.1|955799_956885_+	DNA polymerase IV	NA	NA	NA	NA	NA
WP_005012067.1|956983_957934_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931084.1|958036_958621_+	nitroreductase	NA	NA	NA	NA	NA
WP_003812010.1|958690_960112_-	argininosuccinate lyase	NA	NA	NA	NA	NA
WP_010931083.1|960219_961566_+	mechanosensitive ion channel family protein	NA	NA	NA	NA	NA
WP_050818159.1|961604_963248_+	NAD+ synthase	NA	A0A2L0UZF5	Agrobacterium_phage	36.4	1.9e-86
WP_003812004.1|963291_963630_+	P-II family nitrogen regulator	NA	NA	NA	NA	NA
WP_005013747.1|963654_964605_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 10
NZ_CP011255	Bordetella pertussis strain I344 chromosome, complete genome	4111065	1042066	1099819	4111065	transposase	Salmonella_phage(28.57%)	49	NA	NA
WP_010931070.1|1042066_1043017_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931041.1|1046763_1047375_-	DUF2239 family protein	NA	NA	NA	NA	NA
WP_003812368.1|1047597_1049058_+	IMP dehydrogenase	NA	A0A1V0SHK8	Klosneuvirus	41.3	1.6e-97
WP_010931040.1|1049154_1050747_+	glutamine-hydrolyzing GMP synthase	NA	A0A1V0SH76	Hokovirus	33.3	1.0e-17
WP_019247974.1|1051100_1051358_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003816876.1|1051359_1052700_+	type II toxin-antitoxin system HipA family toxin	NA	NA	NA	NA	NA
WP_010931038.1|1052795_1053485_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247976.1|1053497_1054928_+	MFS transporter	NA	NA	NA	NA	NA
WP_014905903.1|1056652_1057474_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931036.1|1057484_1059056_+	amidohydrolase	NA	NA	NA	NA	NA
WP_010931035.1|1059084_1060062_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931034.1|1060088_1060892_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	38.2	2.7e-30
WP_024001108.1|1060888_1061683_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_003816890.1|1061690_1062926_+	DUF521 domain-containing protein	NA	NA	NA	NA	NA
WP_010931032.1|1062918_1063353_+	DUF126 domain-containing protein	NA	NA	NA	NA	NA
WP_010931031.1|1064625_1066353_-	sulfate permease	NA	NA	NA	NA	NA
WP_010931030.1|1066464_1067823_+	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
WP_005013747.1|1068115_1069066_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931029.1|1069106_1070177_+	FUSC family protein	NA	NA	NA	NA	NA
WP_010931028.1|1070199_1071078_-	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
WP_010931027.1|1071249_1072221_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010931026.1|1072383_1073226_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931025.1|1073387_1074068_+	cupin domain-containing protein	NA	NA	NA	NA	NA
WP_010931024.1|1074061_1075231_+	FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010931023.1|1075227_1076259_+	alcohol dehydrogenase catalytic domain-containing protein	NA	A0A2K9L339	Tupanvirus	27.8	1.8e-26
WP_010931022.1|1076302_1077544_+	MFS transporter	NA	NA	NA	NA	NA
WP_010931021.1|1077578_1079111_-	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
WP_010931020.1|1079191_1079815_+	FMN-binding negative transcriptional regulator	NA	NA	NA	NA	NA
WP_010931019.1|1079845_1080457_+	LysE family translocator	NA	NA	NA	NA	NA
WP_010931018.1|1080492_1080963_+	DUF1801 domain-containing protein	NA	NA	NA	NA	NA
WP_019248147.1|1081394_1082399_+	M20/M25/M40 family metallo-hydrolase	NA	NA	NA	NA	NA
WP_010931017.1|1082435_1083950_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931016.1|1083953_1084913_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931015.1|1084941_1085745_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931014.1|1085746_1087381_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	31.1	2.9e-15
WP_010931013.1|1087464_1088526_+	LacI family DNA-binding transcriptional regulator	NA	NA	NA	NA	NA
WP_004567322.1|1088724_1088994_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931012.1|1088997_1089522_+	DNA-binding protein	NA	J9Q7G7	Salmonella_phage	32.9	6.5e-09
WP_010929591.1|1089937_1090888_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931011.1|1090884_1091919_-	metal-dependent hydrolase	NA	NA	NA	NA	NA
WP_003816758.1|1092027_1092666_+	DedA family protein	NA	NA	NA	NA	NA
WP_019247724.1|1092960_1093188_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_003820420.1|1093310_1094024_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_005013747.1|1094268_1095219_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931009.1|1095322_1095604_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931008.1|1095718_1097167_-	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
WP_010929584.1|1097277_1098228_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003816756.1|1098224_1098674_-	dUTP diphosphatase	NA	S4TNT3	Salmonella_phage	67.2	3.7e-45
WP_010929584.1|1098868_1099819_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 11
NZ_CP011255	Bordetella pertussis strain I344 chromosome, complete genome	4111065	1189510	1242690	4111065	tRNA,transposase	Salmonella_phage(22.22%)	46	NA	NA
WP_005013747.1|1189510_1190461_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814065.1|1190627_1190981_+	cytochrome c	NA	NA	NA	NA	NA
WP_003814063.1|1190993_1191356_+	cytochrome c	NA	NA	NA	NA	NA
WP_003814061.1|1191397_1191823_-	DUF1841 family protein	NA	NA	NA	NA	NA
WP_003814059.1|1192025_1193282_+	NADP-dependent isocitrate dehydrogenase	NA	Q77Z09	Phage_21	64.8	1.2e-11
WP_003814057.1|1193480_1194461_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005015028.1|1194610_1195852_+	O-antigen ligase family protein	NA	NA	NA	NA	NA
WP_005013747.1|1195950_1196901_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814052.1|1196909_1197605_-	two-component system response regulator KdpE	NA	NA	NA	NA	NA
WP_003814050.1|1200426_1201026_-	potassium-transporting ATPase subunit KdpC	NA	NA	NA	NA	NA
WP_010930950.1|1201036_1203202_-	potassium-transporting ATPase subunit KdpB	NA	M1HBF8	Paramecium_bursaria_Chlorella_virus	27.1	1.2e-24
WP_010930949.1|1203225_1205010_-	potassium-transporting ATPase subunit KdpA	NA	NA	NA	NA	NA
WP_017685545.1|1205009_1205099_-	K(+)-transporting ATPase subunit F	NA	NA	NA	NA	NA
WP_003814042.1|1205793_1206066_+	DUF4212 domain-containing protein	NA	NA	NA	NA	NA
WP_003814040.1|1206065_1208132_+	cation acetate symporter	NA	NA	NA	NA	NA
WP_010929577.1|1208128_1209079_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005015014.1|1209194_1209527_-	multidrug transporter	NA	NA	NA	NA	NA
WP_010929073.1|1209523_1210210_-	Smr/MutS family protein	NA	NA	NA	NA	NA
WP_010930948.1|1210196_1211156_-	thioredoxin-disulfide reductase	NA	A0A2I2L5E1	Orpheovirus	40.2	3.1e-57
WP_003814032.1|1211197_1213558_+	DNA translocase FtsK	NA	S5VNE3	Mycobacterium_phage	48.0	7.6e-81
WP_010930946.1|1213557_1214190_+	outer membrane lipoprotein chaperone LolA	NA	NA	NA	NA	NA
WP_010930945.1|1214291_1215632_+	replication-associated recombination protein A	NA	G3MBE0	Bacillus_virus	38.9	1.6e-75
WP_010930944.1|1215678_1217034_+|tRNA	serine--tRNA ligase	tRNA	A0A1B1IVT2	uncultured_Mediterranean_phage	47.5	1.6e-83
WP_170954289.1|1217159_1217804_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003814024.1|1217748_1218066_-	virulence factor	NA	NA	NA	NA	NA
WP_003814023.1|1218338_1218854_-	hypothetical protein	NA	T1SAR8	Salmonella_phage	44.6	5.1e-06
WP_003814022.1|1218947_1219109_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003814021.1|1219124_1219880_-	GGDEF domain-containing protein	NA	NA	NA	NA	NA
WP_019247690.1|1220218_1220425_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003814020.1|1220432_1221092_-	NAAT family transporter	NA	NA	NA	NA	NA
WP_010930941.1|1221386_1223591_-	TonB-dependent alcaligin siderophore receptor FauA	NA	NA	NA	NA	NA
WP_010930940.1|1223701_1224925_-	alcaligin siderophore export MFS transporter Bcr	NA	S4TR35	Salmonella_phage	29.4	9.8e-24
WP_003814017.1|1225047_1226022_-	alcaligin siderophore biosynthesis transcriptional regulator AlcR	NA	NA	NA	NA	NA
WP_005013753.1|1226089_1227283_-	alcaligin siderophore biosynthesis protein AlcE	NA	NA	NA	NA	NA
WP_003814016.1|1227297_1228098_-	alcaligin siderophore biosynthesis protein AlcD	NA	NA	NA	NA	NA
WP_010930939.1|1228094_1229951_-	alcaligin siderophore biosynthesis protein AlcC	NA	NA	NA	NA	NA
WP_003814014.1|1229947_1230553_-	alcaligin siderophore biosynthesis protein AlcB	NA	NA	NA	NA	NA
WP_003814013.1|1230571_1231957_-	alcaligin siderophore biosynthesis protein AlcA	NA	NA	NA	NA	NA
WP_003814012.1|1232682_1233909_+	cation:proton antiporter	NA	NA	NA	NA	NA
WP_003814011.1|1233997_1234780_+	3-hydroxybutyrate dehydrogenase	NA	NA	NA	NA	NA
WP_010929591.1|1234878_1235829_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814010.1|1235855_1236629_+	peroxide stress protein YaaA	NA	NA	NA	NA	NA
WP_003814009.1|1236640_1237882_+	MFS transporter	NA	NA	NA	NA	NA
WP_076879548.1|1239663_1240614_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930389.1|1240645_1241743_+	sensor domain-containing diguanylate cyclase	NA	A0A127AWB9	Bacillus_phage	37.3	3.5e-20
WP_005013747.1|1241739_1242690_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 12
NZ_CP011255	Bordetella pertussis strain I344 chromosome, complete genome	4111065	1284539	1352625	4111065	tRNA,transposase	Streptococcus_virus(11.11%)	59	NA	NA
WP_010930416.1|1284539_1285028_+|tRNA	Cys-tRNA(Pro) deacylase	tRNA	NA	NA	NA	NA
WP_019248504.1|1285145_1285724_+	DJ-1/PfpI family protein	NA	NA	NA	NA	NA
WP_010930418.1|1285829_1286198_+	ribbon-helix-helix domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|1286296_1287247_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994932.1|1287253_1288366_-	D-alanyl-D-alanine endopeptidase	NA	NA	NA	NA	NA
WP_010930419.1|1289052_1290255_+	MFS transporter	NA	NA	NA	NA	NA
WP_004568212.1|1290290_1290437_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930420.1|1290458_1293119_+	PD-(D/E)XK nuclease family protein	NA	NA	NA	NA	NA
WP_010930421.1|1293131_1296536_+	UvrD-helicase domain-containing protein	NA	NA	NA	NA	NA
WP_023995689.1|1297203_1299429_+	DNA polymerase III subunit gamma/tau	NA	A0A1U9WR94	Streptococcus_virus	38.5	1.2e-43
WP_010930423.1|1299475_1299802_+	YbaB/EbfC family nucleoid-associated protein	NA	NA	NA	NA	NA
WP_010930424.1|1299852_1300461_+	recombination protein RecR	NA	NA	NA	NA	NA
WP_005013747.1|1300559_1301510_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930425.1|1301579_1302344_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930426.1|1302340_1302940_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930427.1|1303043_1303895_-	neutral zinc metallopeptidase	NA	A0A1I9SA48	Rhodococcus_phage	35.3	7.0e-37
WP_010928449.1|1303954_1304581_+	threonylcarbamoyl-AMP synthase	NA	NA	NA	NA	NA
WP_010929591.1|1304577_1305528_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019249265.1|1305626_1306739_-	DUF1513 domain-containing protein	NA	NA	NA	NA	NA
WP_024000672.1|1306728_1307730_-	imelysin family protein	NA	NA	NA	NA	NA
WP_019247498.1|1307835_1309347_-	c-type cytochrome	NA	NA	NA	NA	NA
WP_023853587.1|1309343_1310648_-	imelysin	NA	NA	NA	NA	NA
WP_010930431.1|1310759_1311320_-	membrane protein	NA	NA	NA	NA	NA
WP_010930432.1|1311587_1312142_+	NAD(P)H-dependent oxidoreductase	NA	A0A2P0ZL82	Lactobacillus_phage	32.0	1.7e-15
WP_010930433.1|1312597_1312813_-	dodecin domain-containing protein	NA	NA	NA	NA	NA
WP_033446228.1|1313067_1315665_+	DNA mismatch repair protein MutS	NA	A0A1V0SDQ0	Indivirus	22.6	1.5e-21
WP_010930435.1|1315661_1316849_+	cupin domain-containing protein	NA	NA	NA	NA	NA
WP_010930436.1|1317507_1318122_+	serotype 3 fimbrial subunit	NA	NA	NA	NA	NA
WP_010930437.1|1318210_1319338_-	outer membrane protein assembly factor BamC	NA	NA	NA	NA	NA
WP_033446216.1|1319349_1320255_-	4-hydroxy-tetrahydrodipicolinate synthase	NA	NA	NA	NA	NA
WP_005012067.1|1321147_1322098_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930439.1|1322279_1323032_+	glutamine ABC transporter substrate-binding protein GlnH	NA	NA	NA	NA	NA
WP_003811112.1|1323100_1323760_+	glutamine ABC transporter permease GlnP	NA	NA	NA	NA	NA
WP_003811113.1|1323756_1324485_+	glutamine ABC transporter ATP-binding protein GlnQ	NA	G9BWD6	Planktothrix_phage	39.3	3.3e-35
WP_010930440.1|1324497_1326777_-	bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase	NA	A0A1B1IUF0	uncultured_Mediterranean_phage	32.1	5.9e-06
WP_010930441.1|1326801_1327005_-	DNA-directed RNA polymerase subunit omega	NA	NA	NA	NA	NA
WP_010930442.1|1327046_1327679_-	guanylate kinase	NA	A0A218KC48	Bacillus_phage	33.9	2.4e-13
WP_010930443.1|1327814_1328732_-	c-type cytochrome	NA	NA	NA	NA	NA
WP_010930444.1|1328728_1329442_-	c-type cytochrome	NA	NA	NA	NA	NA
WP_003811135.1|1329679_1330450_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_003811137.1|1330454_1331054_-	C40 family peptidase	NA	A0A0A8WF62	Clostridium_phage	41.6	1.4e-20
WP_003811138.1|1331298_1332789_+	AMP nucleosidase	NA	NA	NA	NA	NA
WP_010926696.1|1332847_1333132_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010930445.1|1333269_1333425_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003811148.1|1333697_1334624_-	YicC family protein	NA	NA	NA	NA	NA
WP_003811149.1|1334760_1335501_+	ribonuclease PH	NA	NA	NA	NA	NA
WP_010930446.1|1335667_1337044_-	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_003811152.1|1337225_1338131_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930448.1|1339782_1341585_-	EAL domain-containing protein	NA	NA	NA	NA	NA
WP_010930449.1|1341711_1342353_+	RdgB/HAM1 family non-canonical purine NTP pyrophosphatase	NA	NA	NA	NA	NA
WP_005012808.1|1342451_1343402_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930450.1|1343423_1344644_+	oxygen-independent coproporphyrinogen III oxidase-like protein	NA	NA	NA	NA	NA
WP_003811164.1|1344829_1346242_+	type I glutamate--ammonia ligase	NA	NA	NA	NA	NA
WP_003811167.1|1346305_1347373_+	PAS domain-containing protein	NA	Q8QKV7	Ectocarpus_siliculosus_virus	23.5	1.1e-05
WP_010930451.1|1347372_1348860_+	nitrogen regulation protein NR(I)	NA	NA	NA	NA	NA
WP_010930452.1|1348869_1349814_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811176.1|1349973_1350672_+	pirin family protein	NA	NA	NA	NA	NA
WP_010930453.1|1350749_1351655_+	pirin family protein	NA	NA	NA	NA	NA
WP_005012067.1|1351674_1352625_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 13
NZ_CP011255	Bordetella pertussis strain I344 chromosome, complete genome	4111065	1388574	1444164	4111065	transposase	Brazilian_cedratvirus(25.0%)	46	NA	NA
WP_010931070.1|1388574_1389525_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930486.1|1389583_1390357_+	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_014486074.1|1390349_1391906_+	LTA synthase family protein	NA	NA	NA	NA	NA
WP_005013747.1|1391902_1392853_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003810741.1|1394179_1394782_-	TetR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003810743.1|1395021_1395723_-	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
WP_003816696.1|1395716_1396499_-	ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	25.8	2.0e-09
WP_005012808.1|1396683_1397634_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930483.1|1397732_1398470_-	TerC family protein	NA	A0A0S4KZH7	Pseudomonas_phage	46.6	4.1e-41
WP_010926609.1|1398659_1399418_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930482.1|1399464_1400454_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930481.1|1400631_1401600_-	transporter	NA	NA	NA	NA	NA
WP_010930480.1|1403139_1404108_+	AAA family ATPase	NA	NA	NA	NA	NA
WP_010930479.1|1404116_1405058_+	DUF58 domain-containing protein	NA	NA	NA	NA	NA
WP_010930478.1|1405531_1406542_+	VWA domain-containing protein	NA	NA	NA	NA	NA
WP_010930477.1|1406532_1408047_+	VWA domain-containing protein	NA	NA	NA	NA	NA
WP_010930476.1|1408043_1409390_+	BatD family protein	NA	NA	NA	NA	NA
WP_010930475.1|1409392_1410427_+	haloacid dehalogenase-like hydrolase	NA	NA	NA	NA	NA
WP_023852967.1|1410476_1412102_+	arylsulfatase	NA	A0A2P0VMN7	Tetraselmis_virus	52.2	2.0e-149
WP_005012067.1|1412654_1413605_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930487.1|1413709_1414657_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247865.1|1414710_1416525_-	sensor histidine kinase	NA	NA	NA	NA	NA
WP_010930489.1|1416517_1417192_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_023995112.1|1417321_1420396_+	autotransporter SphB2	NA	NA	NA	NA	NA
WP_019247905.1|1420409_1420709_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010930492.1|1421023_1421647_-	glutathione S-transferase family protein	NA	NA	NA	NA	NA
WP_010930493.1|1421890_1422760_+	TauD/TfdA family dioxygenase	NA	NA	NA	NA	NA
WP_010930494.1|1422737_1423682_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247909.1|1423767_1424694_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019247910.1|1424806_1425586_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930497.1|1425576_1426773_-	alpha-hydroxy-acid oxidizing protein	NA	NA	NA	NA	NA
WP_010930498.1|1426803_1427754_-	fumarylacetoacetate hydrolase family protein	NA	NA	NA	NA	NA
WP_010930499.1|1427975_1428665_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930500.1|1428729_1429485_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930501.1|1429536_1430529_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930502.1|1430538_1431492_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811538.1|1431607_1432570_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019249376.1|1433971_1434400_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|1434396_1435347_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_170954298.1|1435640_1436378_-	arsenical resistance protein ArsH	NA	A0A2H4J5V6	uncultured_Caudovirales_phage	68.2	1.3e-87
WP_019249653.1|1437991_1438372_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010930506.1|1440091_1441063_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930507.1|1441076_1441790_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930508.1|1441794_1442712_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811452.1|1442818_1443115_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929588.1|1443213_1444164_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 14
NZ_CP011255	Bordetella pertussis strain I344 chromosome, complete genome	4111065	1451460	1514426	4111065	tRNA,transposase	Klosneuvirus(12.5%)	55	NA	NA
WP_005013747.1|1451460_1452411_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247780.1|1452454_1452997_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930513.1|1453094_1453943_+	haloacid dehalogenase-like hydrolase	NA	NA	NA	NA	NA
WP_004568494.1|1453935_1454442_+|tRNA	tRNA adenosine(34) deaminase TadA	tRNA	S4VYT2	Pandoravirus	38.4	3.4e-07
WP_010930515.1|1454438_1455440_+	muramoyltetrapeptide carboxypeptidase	NA	NA	NA	NA	NA
WP_010930516.1|1455452_1456247_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010930517.1|1456295_1458197_-	TRAP transporter large permease subunit	NA	NA	NA	NA	NA
WP_003810992.1|1458193_1458817_-	TRAP transporter small permease subunit	NA	NA	NA	NA	NA
WP_003816541.1|1458943_1460068_-	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930518.1|1460448_1462053_+	ABC-F family ATPase	NA	A0A1V0SKJ1	Klosneuvirus	28.9	1.2e-53
WP_010930519.1|1462208_1462985_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	34.2	1.2e-30
WP_010930520.1|1463069_1464068_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930521.1|1464064_1464838_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_005012067.1|1465822_1466773_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930523.1|1466810_1467398_+	YigZ family protein	NA	A0A1X9I5T8	Streptococcus_phage	35.8	4.7e-16
WP_003811007.1|1467415_1467799_-	thioredoxin family protein	NA	V9SJ74	Achromobacter_phage	25.8	8.1e-09
WP_003811011.1|1469158_1470451_-	NCS2 family permease	NA	A0A0R6PHV4	Moraxella_phage	36.0	1.7e-66
WP_010930524.1|1470585_1471626_+|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD	tRNA	A0A0R6PI74	Moraxella_phage	51.3	6.1e-91
WP_010929632.1|1471723_1472740_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003811015.1|1473007_1473655_-	glycerol-3-phosphate 1-O-acyltransferase PlsY	NA	NA	NA	NA	NA
WP_010930526.1|1473780_1474539_+	5'/3'-nucleotidase SurE	NA	A0A1B1ITZ2	uncultured_Mediterranean_phage	51.2	1.4e-68
WP_019247478.1|1474523_1475303_+	protein-L-isoaspartate(D-aspartate) O-methyltransferase	NA	A0A1B1IU40	uncultured_Mediterranean_phage	46.9	4.8e-32
WP_003811022.1|1475320_1476205_+	peptidoglycan DD-metalloendopeptidase family protein	NA	A0A292GJG6	Xanthomonas_phage	49.5	4.6e-15
WP_004568488.1|1476201_1476981_+	3'-5' exonuclease	NA	NA	NA	NA	NA
WP_010930528.1|1477085_1477685_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930529.1|1477973_1478726_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003816525.1|1478844_1480245_+	23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD	NA	A0A2K5B251	Erysipelothrix_phage	26.5	7.3e-31
WP_003816523.1|1480268_1480667_-	Cu(I)-responsive transcriptional regulator	NA	NA	NA	NA	NA
WP_003811035.1|1480842_1481043_+	heavy-metal-associated domain-containing protein	NA	NA	NA	NA	NA
WP_010930530.1|1481181_1481910_+	redoxin family protein	NA	A0A1D8KSL1	Synechococcus_phage	56.8	9.6e-43
WP_003816520.1|1482043_1483459_+	dihydrolipoyl dehydrogenase	NA	NA	NA	NA	NA
WP_003816518.1|1483462_1484326_-	23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ	NA	NA	NA	NA	NA
WP_004568486.1|1484338_1485088_-	glycerophosphodiester phosphodiesterase	NA	A0A2H4PGQ5	Escherichia_phage	27.8	1.5e-14
WP_019247881.1|1485270_1487286_+	SurA N-terminal domain-containing protein	NA	NA	NA	NA	NA
WP_019247882.1|1487267_1487936_-	arylesterase	NA	NA	NA	NA	NA
WP_005012067.1|1488710_1489661_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003813572.1|1489809_1490148_-	BON domain-containing protein	NA	NA	NA	NA	NA
WP_003813570.1|1490205_1490367_-	DUF1328 domain-containing protein	NA	NA	NA	NA	NA
WP_003813568.1|1490398_1490599_-	CsbD family protein	NA	NA	NA	NA	NA
WP_010930533.1|1490864_1493438_-	cyanophycin synthetase	NA	NA	NA	NA	NA
WP_019247811.1|1493508_1496058_-	cyanophycin synthetase	NA	NA	NA	NA	NA
WP_010930535.1|1498608_1499097_+	DUF1854 domain-containing protein	NA	NA	NA	NA	NA
WP_029443743.1|1499188_1500340_-	N-acetyltransferase	NA	NA	NA	NA	NA
WP_004566336.1|1500393_1501215_+	ferritin-like domain-containing protein	NA	NA	NA	NA	NA
WP_010930537.1|1501253_1502483_+	lytic murein transglycosylase	NA	NA	NA	NA	NA
WP_004566334.1|1502611_1503052_+	DUF937 domain-containing protein	NA	NA	NA	NA	NA
WP_005012808.1|1503162_1504113_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930538.1|1504109_1504583_-	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_033446178.1|1504744_1505683_+	membrane protein	NA	NA	NA	NA	NA
WP_010930540.1|1505684_1506893_-	bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC	NA	Q9HH70	Methanothermobacter_phage	30.0	3.8e-36
WP_010930541.1|1506997_1507504_-	lipoprotein signal peptidase	NA	NA	NA	NA	NA
WP_010930542.1|1507506_1510368_-|tRNA	isoleucine--tRNA ligase	tRNA	A0A1V0SJ93	Klosneuvirus	25.5	1.0e-71
WP_010930543.1|1510357_1511323_-	bifunctional riboflavin kinase/FAD synthetase	NA	NA	NA	NA	NA
WP_076879626.1|1511382_1513377_+	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	33.3	4.4e-21
WP_010930179.1|1513475_1514426_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 15
NZ_CP011255	Bordetella pertussis strain I344 chromosome, complete genome	4111065	1565684	1624954	4111065	protease,tRNA,transposase	Klosneuvirus(40.0%)	51	NA	NA
WP_005013747.1|1565684_1566635_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930573.1|1566759_1567569_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010929591.1|1567769_1568720_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929577.1|1568818_1569769_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930574.1|1571042_1572260_+	four-carbon acid sugar kinase family protein	NA	NA	NA	NA	NA
WP_003818670.1|1573316_1574219_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930576.1|1574295_1575168_+	MOSC N-terminal beta barrel domain-containing protein	NA	NA	NA	NA	NA
WP_003818672.1|1575298_1575667_+	aspartate 1-decarboxylase	NA	NA	NA	NA	NA
WP_010930577.1|1575724_1576771_+	CDP-6-deoxy-delta-3,4-glucoseen reductase	NA	NA	NA	NA	NA
WP_010930578.1|1576966_1578223_+	D-amino acid dehydrogenase	NA	NA	NA	NA	NA
WP_003810623.1|1578227_1579565_+	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_050818134.1|1579714_1580671_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247555.1|1580773_1581706_-	acyclic terpene utilization AtuA family protein	NA	NA	NA	NA	NA
WP_019247554.1|1581821_1582142_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247553.1|1582134_1582494_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930581.1|1582541_1584116_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003810637.1|1584168_1585113_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010930582.1|1585130_1585961_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010930583.1|1585953_1587588_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	32.7	8.2e-18
WP_010930584.1|1587584_1588940_+	amidase	NA	NA	NA	NA	NA
WP_010930585.1|1589846_1591424_+	lipoprotein	NA	NA	NA	NA	NA
WP_010930586.1|1591427_1592702_+	type 4b pilus protein PilO2	NA	NA	NA	NA	NA
WP_010930587.1|1592799_1593174_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930588.1|1594889_1596023_+	general secretion pathway protein	NA	NA	NA	NA	NA
WP_003810661.1|1596060_1596666_+	prepilin-type N-terminal cleavage/methylation domain-containing protein	NA	NA	NA	NA	NA
WP_010930589.1|1596662_1597481_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930590.1|1597552_1600177_+|tRNA	alanine--tRNA ligase	tRNA	A0A1V0SK38	Klosneuvirus	39.4	1.7e-81
WP_004568544.1|1600163_1600418_+	sulfurtransferase TusA family protein	NA	NA	NA	NA	NA
WP_010930591.1|1600484_1601066_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010926757.1|1601369_1601630_+	30S ribosomal protein S16	NA	NA	NA	NA	NA
WP_014905757.1|1601795_1602419_+	ribosome maturation factor RimM	NA	NA	NA	NA	NA
WP_003816734.1|1602418_1603192_+|tRNA	tRNA (guanosine(37)-N1)-methyltransferase TrmD	tRNA	NA	NA	NA	NA
WP_010930593.1|1603188_1604397_-	aminotransferase class V-fold PLP-dependent enzyme	NA	NA	NA	NA	NA
WP_010930594.1|1604422_1604896_-	RidA family protein	NA	NA	NA	NA	NA
WP_010930048.1|1604969_1605920_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930796.1|1606018_1607368_-	two-component sensor histidine kinase	NA	NA	NA	NA	NA
WP_023852900.1|1608133_1608889_+	MipA/OmpV family protein	NA	NA	NA	NA	NA
WP_010930794.1|1608981_1611864_-|tRNA	valine--tRNA ligase	tRNA	A0A1V0SK04	Klosneuvirus	37.1	3.7e-138
WP_003810689.1|1612186_1612612_+	nucleoside-diphosphate kinase	NA	D2E8E1	Anguillid_herpesvirus	43.2	2.1e-21
WP_004568542.1|1612639_1613788_+	23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN	NA	NA	NA	NA	NA
WP_003810693.1|1613784_1614291_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010930793.1|1614297_1615593_+	flavodoxin-dependent (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase	NA	NA	NA	NA	NA
WP_023995843.1|1615651_1616938_+|tRNA	histidine--tRNA ligase	tRNA	NA	NA	NA	NA
WP_010930791.1|1616939_1617578_+	tetratricopeptide repeat protein	NA	NA	NA	NA	NA
WP_003810701.1|1617580_1618741_+	outer membrane protein assembly factor BamB	NA	NA	NA	NA	NA
WP_003810703.1|1618767_1620123_+	ribosome biogenesis GTPase Der	NA	NA	NA	NA	NA
WP_010930790.1|1620126_1621197_+	histidinol-phosphate transaminase	NA	A0A1X6WGT4	Pacmanvirus	25.7	2.5e-15
WP_003810707.1|1621335_1621572_+	RNA chaperone Hfq	NA	NA	NA	NA	NA
WP_010930789.1|1621659_1622766_+	GTPase HflX	NA	NA	NA	NA	NA
WP_010930788.1|1622731_1624036_+|protease	FtsH protease activity modulator HflK	protease	NA	NA	NA	NA
WP_010930787.1|1624054_1624954_+|protease	protease modulator HflC	protease	NA	NA	NA	NA
>prophage 16
NZ_CP011255	Bordetella pertussis strain I344 chromosome, complete genome	4111065	1703930	1770430	4111065	transposase	uncultured_Caudovirales_phage(40.0%)	56	NA	NA
WP_010929588.1|1703930_1704881_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811361.1|1704946_1705126_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247449.1|1705242_1705998_-	alpha/beta fold hydrolase	NA	NA	NA	NA	NA
WP_010930310.1|1705984_1707130_-	DUF3182 family protein	NA	NA	NA	NA	NA
WP_010930208.1|1708037_1708988_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811370.1|1709175_1710378_-	cardiolipin synthase ClsB	NA	NA	NA	NA	NA
WP_003811372.1|1710374_1711133_-	endonuclease/exonuclease/phosphatase family protein	NA	NA	NA	NA	NA
WP_003811375.1|1711526_1712159_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010930311.1|1713114_1715715_+	BP1344/BB2830 family autotransporter	NA	NA	NA	NA	NA
WP_010930312.1|1715702_1719122_-	TM0106 family RecB-like putative nuclease	NA	NA	NA	NA	NA
WP_010930313.1|1719129_1720035_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811381.1|1720173_1720752_+	NAD(P)H-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010930314.1|1720748_1721660_+	CoA ester lyase	NA	NA	NA	NA	NA
WP_010930315.1|1721673_1722354_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930316.1|1722555_1724595_+	acetate--CoA ligase family protein	NA	NA	NA	NA	NA
WP_014486069.1|1724613_1725600_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930317.1|1725625_1726423_+	citryl-CoA lyase	NA	NA	NA	NA	NA
WP_003811389.1|1726419_1727613_+	CoA transferase	NA	NA	NA	NA	NA
WP_003811391.1|1727609_1728572_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003811393.1|1728589_1729630_-	LacI family DNA-binding transcriptional regulator	NA	NA	NA	NA	NA
WP_003811396.1|1729617_1730226_-	3-isopropylmalate dehydratase small subunit	NA	NA	NA	NA	NA
WP_010930318.1|1731814_1732810_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003811400.1|1732829_1734008_+	mandelate racemase/muconate lactonizing enzyme family protein	NA	NA	NA	NA	NA
WP_003811401.1|1734018_1734936_+	2-dehydropantoate 2-reductase	NA	NA	NA	NA	NA
WP_010930208.1|1734991_1735942_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812022.1|1736040_1736811_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	39.1	9.8e-30
WP_003812020.1|1736807_1737488_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010930319.1|1737554_1738343_-	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931363.1|1738589_1739606_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010930321.1|1739911_1741066_+	flagellar type III secretion system protein FlhB	NA	NA	NA	NA	NA
WP_003817170.1|1745571_1746054_-	flagellar protein FlgN	NA	NA	NA	NA	NA
WP_003817172.1|1746071_1746362_-	flagellar biosynthesis anti-sigma factor FlgM	NA	NA	NA	NA	NA
WP_010930322.1|1746488_1747199_-	flagellar basal body P-ring formation protein FlgA	NA	NA	NA	NA	NA
WP_010930323.1|1747382_1747790_+	flagellar basal body rod protein FlgB	NA	NA	NA	NA	NA
WP_003817176.1|1747802_1748222_+	flagellar basal body rod protein FlgC	NA	NA	NA	NA	NA
WP_010930324.1|1748269_1748974_+	flagellar basal body rod modification protein FlgD	NA	NA	NA	NA	NA
WP_003817180.1|1749039_1750461_+	flagellar hook-basal body complex protein	NA	NA	NA	NA	NA
WP_003817181.1|1750499_1751264_+	flagellar basal body rod protein FlgF	NA	NA	NA	NA	NA
WP_010930325.1|1751307_1752093_+	flagellar basal-body rod protein FlgG	NA	NA	NA	NA	NA
WP_010930326.1|1752092_1752782_+	flagellar basal body L-ring protein FlgH	NA	NA	NA	NA	NA
WP_010930327.1|1752784_1753918_+	flagellar basal body P-ring protein FlgI	NA	NA	NA	NA	NA
WP_010930328.1|1753935_1754958_+	flagellar assembly peptidoglycan hydrolase FlgJ	NA	A0A088F6W1	Sulfitobacter_phage	31.4	1.9e-12
WP_010930329.1|1755027_1756674_+	flagellar hook-associated protein FlgK	NA	NA	NA	NA	NA
WP_010930330.1|1756707_1758240_+	flagellar hook-associated protein FlgL	NA	NA	NA	NA	NA
WP_010930331.1|1758318_1760139_+	Tar ligand binding domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	52.6	6.4e-11
WP_010930332.1|1760259_1761879_+	Tar ligand binding domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	45.3	1.5e-08
WP_014486070.1|1762057_1763500_+	PAS domain-containing protein	NA	A0A1B0V854	Salmonella_phage	41.8	1.0e-35
WP_010929632.1|1763716_1764733_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010930333.1|1764779_1765568_-	flagellar biosynthetic protein FliR	NA	NA	NA	NA	NA
WP_003811859.1|1765590_1765860_-	flagellar biosynthesis protein FliQ	NA	NA	NA	NA	NA
WP_015041547.1|1765876_1766668_-	flagellar type III secretion system pore protein FliP	NA	NA	NA	NA	NA
WP_003811855.1|1766679_1767021_-	flagellar biosynthetic protein FliO	NA	NA	NA	NA	NA
WP_010930335.1|1767031_1767532_-	flagellar motor switch protein FliN	NA	NA	NA	NA	NA
WP_003811852.1|1767524_1768535_-	flagellar motor switch protein FliM	NA	NA	NA	NA	NA
WP_003811850.1|1768537_1769110_-	flagellar basal body-associated protein FliL	NA	NA	NA	NA	NA
WP_005012067.1|1769479_1770430_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 17
NZ_CP011255	Bordetella pertussis strain I344 chromosome, complete genome	4111065	2372877	2446075	4111065	transposase	Bacillus_virus(20.0%)	60	NA	NA
WP_010929591.1|2372877_2373828_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003818523.1|2374279_2375281_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003810306.1|2375453_2376311_+	proline/glycine betaine ABC transporter permease	NA	NA	NA	NA	NA
WP_003810308.1|2376307_2377570_+	glycine betaine/L-proline ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	36.6	6.8e-28
WP_003818524.1|2377670_2378045_+	tautomerase family protein	NA	NA	NA	NA	NA
WP_010930713.1|2378117_2379305_+	acetyl-CoA C-acyltransferase family protein	NA	NA	NA	NA	NA
WP_010930714.1|2379389_2380160_+	spermidine synthase	NA	NA	NA	NA	NA
WP_010930715.1|2380273_2381038_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930716.1|2380988_2382290_+	malonyl-CoA decarboxylase family protein	NA	NA	NA	NA	NA
WP_010930717.1|2382286_2383093_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003818532.1|2384837_2385809_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003818533.1|2385965_2386478_+	superoxide dismutase family protein	NA	Q9MC02	Salmonella_phage	52.3	1.8e-43
WP_010930718.1|2386636_2387611_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930719.1|2388611_2389406_+	ABC transporter ATP-binding protein	NA	A0A1V0SE00	Indivirus	25.7	5.1e-05
WP_003818535.1|2389431_2390238_-	TOBE domain-containing protein	NA	NA	NA	NA	NA
WP_003810329.1|2390348_2390939_+	DUF4136 domain-containing protein	NA	NA	NA	NA	NA
WP_010930720.1|2390949_2392128_+	patatin-like phospholipase family protein	NA	NA	NA	NA	NA
WP_010930721.1|2392230_2392605_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_019247652.1|2392857_2394174_+	efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
WP_019247651.1|2394240_2397471_+	multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_003810344.1|2398961_2399708_+	pyridoxine 5'-phosphate synthase	NA	NA	NA	NA	NA
WP_010930724.1|2399792_2400254_+	holo-ACP synthase	NA	NA	NA	NA	NA
WP_010930725.1|2400291_2401350_+	beta-N-acetylhexosaminidase	NA	NA	NA	NA	NA
WP_010930726.1|2401312_2403142_+	excinuclease ABC subunit UvrC	NA	NA	NA	NA	NA
WP_003810356.1|2403181_2403754_+	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	NA	NA	NA	NA	NA
WP_010930727.1|2405178_2406000_-	NADPH-dependent 7-cyano-7-deazaguanine reductase QueF	NA	A0A2I7SAX1	Vibrio_phage	37.6	4.1e-42
WP_010930728.1|2406318_2407641_+	isocitrate lyase	NA	NA	NA	NA	NA
WP_010930729.1|2408000_2408636_+	membrane protein	NA	NA	NA	NA	NA
WP_076879629.1|2408595_2409546_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930731.1|2410416_2411289_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010930732.1|2411366_2412506_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930733.1|2412864_2414121_+	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA	NA
WP_003816691.1|2414126_2414654_+	aromatic-ring-hydroxylating dioxygenase subunit beta	NA	NA	NA	NA	NA
WP_003816690.1|2414658_2415477_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003816687.1|2415476_2416199_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930735.1|2416220_2416535_+	2Fe-2S iron-sulfur cluster binding domain-containing protein	NA	NA	NA	NA	NA
WP_010930736.1|2416552_2417701_+	CoA transferase	NA	NA	NA	NA	NA
WP_010930737.1|2417731_2418607_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003816680.1|2418603_2419923_-	AMP-binding protein	NA	NA	NA	NA	NA
WP_014486081.1|2419995_2421192_-	acetyl-CoA acetyltransferase	NA	NA	NA	NA	NA
WP_010930739.1|2421202_2422690_-	hydroxymethylglutaryl-CoA synthase family protein	NA	NA	NA	NA	NA
WP_010930740.1|2425284_2426184_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_023852887.1|2426321_2427287_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930800.1|2427385_2428336_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|2428557_2429508_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812024.1|2429504_2429807_-	SelT/SelW/SelH family protein	NA	NA	NA	NA	NA
WP_003812026.1|2429966_2430371_+	group III truncated hemoglobin	NA	NA	NA	NA	NA
WP_010930743.1|2430363_2431590_+	NnrS family protein	NA	NA	NA	NA	NA
WP_003812030.1|2431586_2432033_+	membrane protein	NA	NA	NA	NA	NA
WP_003812032.1|2432102_2432885_+	exodeoxyribonuclease III	NA	NA	NA	NA	NA
WP_010930744.1|2432926_2434432_+	M81 family metallopeptidase	NA	NA	NA	NA	NA
WP_019247851.1|2434717_2435551_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930745.1|2436988_2437810_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_010930746.1|2437828_2438683_-	polysaccharide deacetylase	NA	NA	NA	NA	NA
WP_003812044.1|2438686_2439658_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_076879627.1|2440342_2440519_+	winged helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_005013747.1|2441004_2441955_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812172.1|2443092_2443389_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247707.1|2443563_2444916_+	glutathione-disulfide reductase	NA	A0A2K5B2C5	Erysipelothrix_phage	27.6	2.9e-45
WP_010930153.1|2445058_2446075_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
>prophage 18
NZ_CP011255	Bordetella pertussis strain I344 chromosome, complete genome	4111065	2595335	2638834	4111065	tRNA,transposase	Bacillus_phage(50.0%)	32	NA	NA
WP_005012067.1|2595335_2596286_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003813574.1|2596384_2597266_-	PhzF family phenazine biosynthesis protein	NA	NA	NA	NA	NA
WP_003821443.1|2597343_2598723_-	4Fe-4S binding protein	NA	NA	NA	NA	NA
WP_010930218.1|2598761_2599607_-	FTR1 family protein	NA	NA	NA	NA	NA
WP_003813580.1|2599622_2599967_-	cupredoxin domain-containing protein	NA	NA	NA	NA	NA
WP_010930217.1|2599969_2600506_-	iron transporter	NA	NA	NA	NA	NA
WP_003813585.1|2600678_2601254_-	polyhydroxyalkanoate synthesis repressor PhaR	NA	NA	NA	NA	NA
WP_003813586.1|2601356_2602094_-	acetoacetyl-CoA reductase	NA	NA	NA	NA	NA
WP_010930216.1|2602161_2603799_-	class I poly(R)-hydroxyalkanoic acid synthase	NA	NA	NA	NA	NA
WP_019247742.1|2603906_2604662_-	peptidoglycan editing factor PgeF	NA	NA	NA	NA	NA
WP_010930214.1|2604649_2605612_-	RluA family pseudouridine synthase	NA	NA	NA	NA	NA
WP_003813594.1|2605713_2606514_+	outer membrane protein assembly factor BamD	NA	NA	NA	NA	NA
WP_010930213.1|2606575_2608651_-	ATP-dependent DNA helicase	NA	A0A127AW80	Bacillus_phage	30.0	2.4e-75
WP_010930212.1|2608815_2611191_+	RNA-binding transcriptional accessory protein Tex	NA	NA	NA	NA	NA
WP_010930211.1|2611271_2612627_-|tRNA	tryptophan--tRNA ligase	tRNA	NA	NA	NA	NA
WP_003813618.1|2614105_2614828_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930207.1|2614882_2615866_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_005012067.1|2615995_2616946_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_077070465.1|2617044_2617995_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930048.1|2618093_2619044_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003813621.1|2619040_2619943_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930206.1|2620030_2620789_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_023853245.1|2620801_2621893_-	cell division protein ZapE	NA	NA	NA	NA	NA
WP_003813626.1|2621990_2623418_-	dihydrolipoyl dehydrogenase	NA	A0A2K5B2C5	Erysipelothrix_phage	28.1	2.1e-41
WP_010930204.1|2623647_2624862_-	2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase	NA	NA	NA	NA	NA
WP_003813631.1|2624907_2627778_-	2-oxoglutarate dehydrogenase E1 component	NA	NA	NA	NA	NA
WP_005013747.1|2628102_2629053_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930202.1|2631237_2631726_-	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930201.1|2631851_2634548_+	alpha-ketoglutarate dehydrogenase	NA	NA	NA	NA	NA
WP_010930200.1|2634702_2636985_+	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
WP_019248935.1|2637161_2637785_+	serotype 2 fimbrial subunit	NA	NA	NA	NA	NA
WP_010930198.1|2637883_2638834_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 19
NZ_CP011255	Bordetella pertussis strain I344 chromosome, complete genome	4111065	2660752	2775069	4111065	holin,protease,tRNA,transposase	uncultured_Mediterranean_phage(17.65%)	99	NA	NA
WP_010930190.1|2660752_2662273_+|tRNA	lysine--tRNA ligase	tRNA	A0A1V0SAC0	Catovirus	36.0	1.2e-82
WP_003812436.1|2662600_2663233_-	TetR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930188.1|2663311_2665177_-	long-chain fatty acid--CoA ligase	NA	A0A1V0SBX8	Catovirus	23.3	9.3e-50
WP_020699602.1|2665173_2665968_-	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	23.3	1.2e-11
WP_010930186.1|2665996_2667112_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930185.1|2668016_2668895_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010930184.1|2668894_2669719_-	ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	22.7	1.0e-08
WP_005012067.1|2669886_2670837_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930183.1|2671049_2673899_+	EAL domain-containing protein	NA	NA	NA	NA	NA
WP_010930182.1|2673880_2674609_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_010930181.1|2674749_2676213_-	YdiU family protein	NA	A0A075BSJ0	Microcystis_phage	32.5	1.7e-43
WP_010930180.1|2676209_2676581_-	DUF2069 domain-containing protein	NA	NA	NA	NA	NA
WP_003812701.1|2676598_2677912_+	YihY family inner membrane protein	NA	NA	NA	NA	NA
WP_003812703.1|2677948_2678407_+	CBS domain-containing protein	NA	NA	NA	NA	NA
WP_010930178.1|2679466_2680480_-|tRNA	tRNA dihydrouridine(20/20a) synthase DusA	tRNA	NA	NA	NA	NA
WP_003812707.1|2680619_2681606_+	homoserine kinase	NA	NA	NA	NA	NA
WP_161633091.1|2681964_2682672_-	DUF192 domain-containing protein	NA	NA	NA	NA	NA
WP_076879620.1|2683252_2684203_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003809618.1|2684354_2684957_-	YhbY family RNA-binding protein	NA	NA	NA	NA	NA
WP_010930175.1|2684975_2685608_+	RlmE family RNA methyltransferase	NA	NA	NA	NA	NA
WP_162096758.1|2685652_2685904_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930174.1|2685845_2687732_+|protease	ATP-dependent zinc metalloprotease FtsH	protease	M4QMW8	Micromonas_pusilla_virus	41.5	1.4e-109
WP_010930173.1|2687750_2688593_+	dihydropteroate synthase	NA	A0A0B5J4J5	Pandoravirus	32.5	3.2e-26
WP_003819875.1|2688589_2689948_+	phosphoglucosamine mutase	NA	NA	NA	NA	NA
WP_003809629.1|2690168_2690963_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_010930172.1|2691193_2692687_-	exopolyphosphatase	NA	NA	NA	NA	NA
WP_010930171.1|2692922_2695004_+	polyphosphate kinase 1	NA	NA	NA	NA	NA
WP_014486066.1|2695198_2696239_+	phosphate ABC transporter substrate-binding protein PstS	NA	M4QHS4	Cyanophage	40.2	2.1e-51
WP_010930169.1|2696373_2697390_+	phosphate ABC transporter permease subunit PstC	NA	NA	NA	NA	NA
WP_003809638.1|2697411_2698269_+	phosphate ABC transporter permease PstA	NA	NA	NA	NA	NA
WP_010930167.1|2698313_2699090_+	phosphate ABC transporter ATP-binding protein PstB	NA	G9BWD6	Planktothrix_phage	28.7	4.3e-17
WP_005012067.1|2699457_2700408_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931070.1|2700506_2701457_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003809441.1|2701483_2701948_-	barstar family protein	NA	NA	NA	NA	NA
WP_014486065.1|2703154_2705443_-	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
WP_010930165.1|2705559_2706432_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930164.1|2706474_2707629_+	pyridoxal phosphate-dependent aminotransferase	NA	NA	NA	NA	NA
WP_010930163.1|2707663_2708494_-	lytic transglycosylase domain-containing protein	NA	NA	NA	NA	NA
WP_023853525.1|2708577_2710122_+	4-hydroxy-3-polyprenylbenzoate decarboxylase	NA	NA	NA	NA	NA
WP_010930161.1|2710164_2710524_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003819794.1|2710525_2710939_-|holin	phage holin family protein	holin	NA	NA	NA	NA
WP_003809432.1|2710979_2711297_-	DUF883 domain-containing protein	NA	NA	NA	NA	NA
WP_003809431.1|2711381_2712098_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930160.1|2712361_2713783_+	uroporphyrinogen-III C-methyltransferase	NA	NA	NA	NA	NA
WP_062826590.1|2716830_2717847_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010930157.1|2718182_2718824_-	uracil phosphoribosyltransferase	NA	NA	NA	NA	NA
WP_003809423.1|2718914_2720351_-	D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase	NA	NA	NA	NA	NA
WP_023853534.1|2720508_2721582_+|tRNA	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	tRNA	NA	NA	NA	NA
WP_010930155.1|2721578_2722715_+|tRNA	tRNA guanosine(34) transglycosylase Tgt	tRNA	A0A1B1IVQ4	uncultured_Mediterranean_phage	44.4	1.9e-85
WP_003809416.1|2722859_2723204_+	preprotein translocase subunit YajC	NA	A0A1B1IVR5	uncultured_Mediterranean_phage	40.4	1.0e-10
WP_010930154.1|2723270_2725151_+	protein translocase subunit SecD	NA	NA	NA	NA	NA
WP_003809411.1|2725200_2726136_+	protein translocase subunit SecF	NA	A0A1B1IVP7	uncultured_Mediterranean_phage	35.5	3.0e-41
WP_062826590.1|2726468_2727485_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_015041211.1|2728422_2729850_+|tRNA	tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB	tRNA	NA	NA	NA	NA
WP_010930151.1|2729846_2730869_+	PhoH family protein	NA	A0A0S0MVD6	Pseudomonas_phage	45.4	8.7e-50
WP_003809396.1|2730858_2731332_+	rRNA maturation RNase YbeY	NA	NA	NA	NA	NA
WP_010930149.1|2731472_2732360_+	CBS domain-containing protein	NA	NA	NA	NA	NA
WP_063389778.1|2732356_2734000_+	apolipoprotein N-acyltransferase	NA	NA	NA	NA	NA
WP_010930148.1|2733996_2735046_-	aldo/keto reductase	NA	NA	NA	NA	NA
WP_010929632.1|2735834_2736851_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003817162.1|2736950_2737583_-	protein phosphatase CheZ	NA	NA	NA	NA	NA
WP_003811911.1|2737591_2737981_-	chemotaxis response regulator CheY	NA	Q56AR1	Bacillus_thuringiensis_phage	33.3	5.7e-10
WP_010930146.1|2738033_2739086_-	chemotaxis response regulator protein-glutamate methylesterase	NA	NA	NA	NA	NA
WP_005012067.1|2739501_2740452_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|2740550_2741501_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930145.1|2742047_2743754_-	Tar ligand binding domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	41.7	1.4e-12
WP_003811919.1|2743827_2744328_-	chemotaxis protein CheW	NA	NA	NA	NA	NA
WP_010930144.1|2744342_2746400_-	chemotaxis protein CheA	NA	NA	NA	NA	NA
WP_019247393.1|2746426_2746720_-	response regulator	NA	NA	NA	NA	NA
WP_003817154.1|2746821_2747769_-	flagellar motor protein MotB	NA	NA	NA	NA	NA
WP_003811927.1|2747781_2748657_-	flagellar motor stator protein MotA	NA	NA	NA	NA	NA
WP_003811929.1|2748777_2749338_-	flagellar transcriptional regulator FlhC	NA	NA	NA	NA	NA
WP_010930143.1|2749372_2749696_-	flagellar transcriptional regulator FlhD	NA	NA	NA	NA	NA
WP_003811933.1|2750131_2750869_+	RNA polymerase sigma factor FliA	NA	NA	NA	NA	NA
WP_005012067.1|2751167_2752118_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003809486.1|2752361_2752625_+	translation initiation factor IF-1	NA	NA	NA	NA	NA
WP_003819817.1|2752698_2752980_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930142.1|2752996_2753857_-	M23 family metallopeptidase	NA	A0A292GJG6	Xanthomonas_phage	36.1	2.6e-15
WP_003809479.1|2753853_2754189_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930141.1|2754242_2754893_-	molybdopterin adenylyltransferase	NA	NA	NA	NA	NA
WP_010930140.1|2755077_2756553_+	inorganic phosphate transporter	NA	NA	NA	NA	NA
WP_019247197.1|2756573_2757518_-	AzlC family ABC transporter permease	NA	NA	NA	NA	NA
WP_003809467.1|2757563_2757881_-	MerR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930139.1|2757883_2758822_-	DnaJ domain-containing protein	NA	A0A0P0YMJ9	Yellowstone_lake_phycodnavirus	24.1	5.6e-11
WP_003819814.1|2758999_2759485_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_010930138.1|2759503_2760052_+	DinB family protein	NA	NA	NA	NA	NA
WP_023994624.1|2760083_2760236_+	hypothetical protein	NA	NA	NA	NA	NA
WP_023853531.1|2760328_2761462_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930137.1|2761565_2762207_+	glutathione transferase	NA	NA	NA	NA	NA
WP_010930136.1|2762361_2764710_+	DUF3141 domain-containing protein	NA	NA	NA	NA	NA
WP_003809454.1|2764706_2765645_+	phosphate acetyltransferase	NA	NA	NA	NA	NA
WP_010930135.1|2765670_2766861_+	acetate kinase	NA	NA	NA	NA	NA
WP_010930134.1|2766857_2767631_+	enoyl-ACP reductase FabI	NA	NA	NA	NA	NA
WP_010930133.1|2767660_2768854_-	phosphoglycerate kinase	NA	NA	NA	NA	NA
WP_010930132.1|2768971_2769982_-	type I glyceraldehyde-3-phosphate dehydrogenase	NA	NA	NA	NA	NA
WP_010930131.1|2769999_2772036_-	transketolase	NA	NA	NA	NA	NA
WP_010930130.1|2772230_2772971_+	16S rRNA (uracil(1498)-N(3))-methyltransferase	NA	NA	NA	NA	NA
WP_005012067.1|2773069_2774020_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012808.1|2774118_2775069_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 20
NZ_CP011255	Bordetella pertussis strain I344 chromosome, complete genome	4111065	2820479	2875841	4111065	transposase	Streptococcus_phage(22.22%)	52	NA	NA
WP_010929591.1|2820479_2821430_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_033446303.1|2821528_2822113_-	helix-hairpin-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003821513.1|2822147_2823137_-	ADP-glyceromanno-heptose 6-epimerase	NA	E3SJ87	Synechococcus_phage	34.4	2.2e-26
WP_010930105.1|2823133_2824075_-	D-glycero-beta-D-manno-heptose-7-phosphate kinase	NA	A0A2H4N7X4	Lake_Baikal_phage	28.1	1.5e-16
WP_010930104.1|2824071_2825292_-	lipopolysaccharide assembly protein LapB	NA	NA	NA	NA	NA
WP_010930103.1|2825334_2825649_-	DUF1049 domain-containing protein	NA	NA	NA	NA	NA
WP_010930102.1|2825840_2826200_-	integration host factor subunit beta	NA	NA	NA	NA	NA
WP_010930101.1|2826201_2827917_-	30S ribosomal protein S1	NA	NA	NA	NA	NA
WP_010930100.1|2828104_2828776_-	(d)CMP kinase	NA	NA	NA	NA	NA
WP_010930099.1|2828790_2830119_-	3-phosphoshikimate 1-carboxyvinyltransferase	NA	NA	NA	NA	NA
WP_010930098.1|2830115_2831015_-	prephenate dehydrogenase/arogenate dehydrogenase family protein	NA	NA	NA	NA	NA
WP_010930097.1|2831101_2832187_-	prephenate dehydratase	NA	NA	NA	NA	NA
WP_010930096.1|2832179_2833313_-	3-phosphoserine/phosphohydroxythreonine transaminase	NA	M1Q1P2	Streptococcus_phage	44.0	6.4e-78
WP_010930095.1|2833312_2835994_-	DNA gyrase subunit A	NA	G3M9Z5	Bacillus_virus	33.5	3.2e-104
WP_010930094.1|2836364_2836946_+	OmpA family protein	NA	NA	NA	NA	NA
WP_010930093.1|2837071_2837797_+	bifunctional 3-demethylubiquinone 3-O-methyltransferase/2-octaprenyl-6-hydroxy phenol methylase	NA	NA	NA	NA	NA
WP_010930092.1|2837793_2838471_+	HAD-IA family hydrolase	NA	NA	NA	NA	NA
WP_010930091.1|2838686_2839868_+	MFS transporter	NA	NA	NA	NA	NA
WP_010930090.1|2840640_2840823_+	type II toxin-antitoxin system HicA family toxin	NA	A0A1L2JY37	Aeribacillus_phage	56.1	3.7e-12
WP_010929584.1|2840852_2841803_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_004566317.1|2841932_2842325_+	type II toxin-antitoxin system HicB family antitoxin	NA	A0A0R6PJ17	Moraxella_phage	45.0	4.8e-25
WP_003821497.1|2842601_2843513_-	LysR family transcriptional regulator	NA	Q6JIH3	Burkholderia_virus	27.6	4.4e-05
WP_010930088.1|2843637_2844612_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_005012067.1|2844608_2845559_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931085.1|2845693_2846800_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010931086.1|2846810_2847908_+	GTP 3',8-cyclase MoaA	NA	NA	NA	NA	NA
WP_010931087.1|2848052_2849258_-	molybdopterin molybdotransferase MoeA	NA	NA	NA	NA	NA
WP_010931088.1|2849264_2849786_-	molybdenum cofactor biosynthesis protein B	NA	NA	NA	NA	NA
WP_010931089.1|2849782_2850274_-	molybdenum cofactor biosynthesis protein MoaE	NA	NA	NA	NA	NA
WP_003819740.1|2850270_2850522_-	MoaD/ThiS family protein	NA	NA	NA	NA	NA
WP_003819741.1|2850502_2850988_-	cyclic pyranopterin monophosphate synthase MoaC	NA	NA	NA	NA	NA
WP_010931090.1|2851123_2854585_+	DUF748 domain-containing protein	NA	NA	NA	NA	NA
WP_010931091.1|2854602_2855487_+	dienelactone hydrolase family protein	NA	NA	NA	NA	NA
WP_010931092.1|2855496_2855928_-	lipoprotein	NA	NA	NA	NA	NA
WP_003809348.1|2856174_2856678_+	peroxiredoxin	NA	M1I839	Pelagibacter_phage	44.1	1.8e-24
WP_010931094.1|2856755_2858156_+	MFS transporter	NA	NA	NA	NA	NA
WP_010931095.1|2858230_2859106_-	membrane protein	NA	NA	NA	NA	NA
WP_023853546.1|2859102_2860110_-	biotin synthase BioB	NA	NA	NA	NA	NA
WP_010931097.1|2860577_2860883_+	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
WP_003819753.1|2860973_2861564_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930320.1|2861754_2862771_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010931098.1|2862962_2865299_-	heavy metal translocating P-type ATPase	NA	E4ZFI9	Streptococcus_phage	42.8	3.2e-124
WP_003812014.1|2865381_2865816_+	Cd(II)/Pb(II)-responsive transcriptional regulator	NA	NA	NA	NA	NA
WP_005013747.1|2865914_2866865_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931099.1|2866861_2867656_-	N-formylglutamate deformylase	NA	NA	NA	NA	NA
WP_010931100.1|2867687_2868392_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010931101.1|2868466_2869267_-	SURF1 family protein	NA	NA	NA	NA	NA
WP_003809276.1|2869263_2869671_-	cytochrome o ubiquinol oxidase subunit IV	NA	NA	NA	NA	NA
WP_003819722.1|2869667_2870309_-	cytochrome o ubiquinol oxidase subunit III	NA	NA	NA	NA	NA
WP_010931102.1|2870301_2872302_-	cytochrome o ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
WP_010931103.1|2873562_2874894_+	MFS transporter	NA	NA	NA	NA	NA
WP_005012067.1|2874890_2875841_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 21
NZ_CP011255	Bordetella pertussis strain I344 chromosome, complete genome	4111065	2890318	2953870	4111065	protease,transposase	uncultured_Mediterranean_phage(28.57%)	52	NA	NA
WP_010930800.1|2890318_2891269_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_024000608.1|2891599_2895421_-	trifunctional transcriptional regulator/proline dehydrogenase/L-glutamate gamma-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
WP_010931111.1|2895577_2896246_-	membrane integrity-associated transporter subunit PqiC	NA	NA	NA	NA	NA
WP_014905522.1|2896250_2897924_-	MCE family protein	NA	NA	NA	NA	NA
WP_003820402.1|2897942_2899262_-	PqiA/YebS family transporter subunit	NA	NA	NA	NA	NA
WP_010931114.1|2899266_2901582_-|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	protease	A0A223W0B1	Agrobacterium_phage	41.9	4.1e-164
WP_010931115.1|2901637_2903806_-	penicillin-binding protein 1C	NA	NA	NA	NA	NA
WP_010931116.1|2903802_2908992_-	alpha-2-macroglobulin family protein	NA	NA	NA	NA	NA
WP_003820400.1|2909081_2909396_-|protease	ATP-dependent Clp protease adapter ClpS	protease	A0A1B1IT64	uncultured_Mediterranean_phage	43.8	1.2e-10
WP_003812875.1|2909623_2909869_+	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	76.6	1.3e-20
WP_003820399.1|2909963_2910482_+	DUF192 domain-containing protein	NA	A0A1B1IUW8	uncultured_Mediterranean_phage	42.2	5.1e-14
WP_010931117.1|2910581_2911787_-	3-oxoadipyl-CoA thiolase	NA	NA	NA	NA	NA
WP_019247560.1|2911902_2913300_-	chloride channel protein	NA	NA	NA	NA	NA
WP_010931119.1|2913416_2913995_-	superoxide dismutase [Fe]	NA	NA	NA	NA	NA
WP_010931120.1|2914067_2915459_-	exodeoxyribonuclease VII large subunit	NA	A0A1V0SD82	Indivirus	32.0	1.4e-29
WP_005012067.1|2915626_2916577_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812889.1|2916857_2917478_+	MotA/TolQ/ExbB proton channel family protein	NA	NA	NA	NA	NA
WP_010931122.1|2917474_2917888_+	biopolymer transporter ExbD	NA	NA	NA	NA	NA
WP_010931123.1|2917884_2918928_+	tetraacyldisaccharide 4'-kinase	NA	NA	NA	NA	NA
WP_003812895.1|2918983_2919172_+	Trm112 family protein	NA	NA	NA	NA	NA
WP_010931124.1|2919181_2919946_+	3-deoxy-manno-octulosonate cytidylyltransferase	NA	NA	NA	NA	NA
WP_010931125.1|2920036_2920693_+	adenylate kinase	NA	NA	NA	NA	NA
WP_010931126.1|2920784_2921543_+	3-hydroxyacyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_010931127.1|2921568_2923170_+	murein biosynthesis integral membrane protein MurJ	NA	NA	NA	NA	NA
WP_010931128.1|2923370_2924375_+	FecR domain-containing protein	NA	NA	NA	NA	NA
WP_003812908.1|2924475_2924739_+	30S ribosomal protein S20	NA	NA	NA	NA	NA
WP_010931129.1|2924856_2925633_-	2-dehydro-3-deoxyglucarate aldolase	NA	NA	NA	NA	NA
WP_010931130.1|2928508_2929621_-	Ldh family oxidoreductase	NA	NA	NA	NA	NA
WP_010929584.1|2929677_2930628_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003813070.1|2930836_2931058_-	YgdI/YgdR family lipoprotein	NA	NA	NA	NA	NA
WP_010931131.1|2931271_2932678_-	threonine synthase	NA	NA	NA	NA	NA
WP_003813074.1|2932674_2933979_-	homoserine dehydrogenase	NA	NA	NA	NA	NA
WP_010931132.1|2933975_2935163_-	alanine transaminase	NA	NA	NA	NA	NA
WP_003813077.1|2935379_2935832_+	Xcc1710-like domain-containing protein	NA	NA	NA	NA	NA
WP_003813079.1|2935834_2936299_+	peroxiredoxin	NA	NA	NA	NA	NA
WP_003813085.1|2938161_2939139_+	4-hydroxythreonine-4-phosphate dehydrogenase PdxA	NA	NA	NA	NA	NA
WP_010931134.1|2939218_2940187_+	bile acid:sodium symporter	NA	NA	NA	NA	NA
WP_003813089.1|2940207_2941581_-	replicative DNA helicase	NA	C7BGG1	Burkholderia_phage	58.2	4.0e-135
WP_003813091.1|2941577_2942414_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931135.1|2942530_2942986_-	50S ribosomal protein L9	NA	NA	NA	NA	NA
WP_003813094.1|2943001_2943274_-	30S ribosomal protein S18	NA	NA	NA	NA	NA
WP_003813095.1|2943366_2943690_-	primosomal replication protein N	NA	NA	NA	NA	NA
WP_010926331.1|2943737_2944118_-	30S ribosomal protein S6	NA	NA	NA	NA	NA
WP_003813103.1|2944337_2945135_-	GTP cyclohydrolase I FolE2	NA	NA	NA	NA	NA
WP_010931136.1|2945291_2947154_-	1-deoxy-D-xylulose-5-phosphate synthase	NA	NA	NA	NA	NA
WP_003820295.1|2947203_2948115_-	polyprenyl synthetase family protein	NA	NA	NA	NA	NA
WP_003813109.1|2948119_2948386_-	exodeoxyribonuclease VII small subunit	NA	NA	NA	NA	NA
WP_010931137.1|2948472_2949342_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931138.1|2949477_2950443_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003813114.1|2950613_2951624_+	acyltransferase family protein	NA	A0A0F6TJ51	Escherichia_coli_O157_typing_phage	24.6	3.6e-16
WP_010931139.1|2951771_2952923_+	aromatic ring-hydroxylating dioxygenase subunit alpha	NA	NA	NA	NA	NA
WP_005012067.1|2952919_2953870_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 22
NZ_CP011255	Bordetella pertussis strain I344 chromosome, complete genome	4111065	2961013	3015244	4111065	transposase	Planktothrix_phage(16.67%)	48	NA	NA
WP_010929591.1|2961013_2961964_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023852715.1|2962084_2962981_-	inositol monophosphatase	NA	NA	NA	NA	NA
WP_003814547.1|2965258_2967484_+	glycoside hydrolase family 31 protein	NA	NA	NA	NA	NA
WP_003814544.1|2967648_2968737_+	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	36.4	8.7e-32
WP_019247918.1|2968693_2969347_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931144.1|2969394_2970192_+	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930176.1|2970723_2971674_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247277.1|2971748_2972903_+	iron-containing alcohol dehydrogenase	NA	NA	NA	NA	NA
WP_005012067.1|2972959_2973910_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814535.1|2974008_2974314_-	antibiotic biosynthesis monooxygenase	NA	NA	NA	NA	NA
WP_003820797.1|2974342_2974777_-	DUF126 domain-containing protein	NA	NA	NA	NA	NA
WP_010931147.1|2974778_2976023_-	DUF521 domain-containing protein	NA	NA	NA	NA	NA
WP_003820799.1|2976019_2976730_-	FadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_033446288.1|2976744_2977656_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931149.1|2978018_2978423_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247890.1|2978419_2978878_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_019247891.1|2978884_2979793_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_010931150.1|2979789_2980656_+	sugar ABC transporter permease	NA	NA	NA	NA	NA
WP_003814524.1|2980642_2981470_+	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
WP_003820806.1|2981480_2982608_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	32.3	1.2e-23
WP_023852748.1|2983685_2984924_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931152.1|2984965_2986228_+	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_010931153.1|2986234_2986987_+	DNA-binding protein	NA	NA	NA	NA	NA
WP_019248355.1|2987038_2987224_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003820813.1|2987499_2987964_+	redox-sensitive transcriptional activator SoxR	NA	NA	NA	NA	NA
WP_003820814.1|2987995_2988655_+	DNA-3-methyladenine glycosylase I	NA	NA	NA	NA	NA
WP_010931154.1|2988799_2990908_+	AsmA family protein	NA	NA	NA	NA	NA
WP_076879634.1|2990904_2991855_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931155.1|2991958_2992579_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931156.1|2992670_2993423_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_019248356.1|2994557_2995682_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247402.1|2995727_2996096_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|2996337_2997288_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247492.1|2998323_2998866_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930176.1|2999251_3000202_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023997028.1|3000198_3001164_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003815281.1|3001233_3002070_+	3-methyl-2-oxobutanoate hydroxymethyltransferase	NA	A0A0P0BXC9	Ostreococcus_lucimarinus_virus	33.3	1.6e-33
WP_010931158.1|3002582_3003692_+	porin	NA	NA	NA	NA	NA
WP_010929591.1|3003753_3004704_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931159.1|3004896_3005679_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010931160.1|3005692_3006442_-	SDR family oxidoreductase	NA	A0A0M4JSW6	Mollivirus	26.4	1.2e-11
WP_010931161.1|3006469_3007816_-	MFS transporter	NA	NA	NA	NA	NA
WP_050681005.1|3007841_3008771_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003819549.1|3008886_3009792_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931163.1|3009809_3011009_-	aspartate/tyrosine/aromatic aminotransferase	NA	NA	NA	NA	NA
WP_010931164.1|3011081_3011774_-	HD domain-containing protein	NA	A0A1D6Y7U0	Golden_Marseillevirus	29.9	4.7e-07
WP_010931165.1|3011822_3014249_-	copper-translocating P-type ATPase	NA	A0A218MNH6	uncultured_virus	33.8	1.2e-86
WP_023853143.1|3014293_3015244_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 23
NZ_CP011255	Bordetella pertussis strain I344 chromosome, complete genome	4111065	3127318	3191151	4111065	protease,tRNA,transposase	Pseudomonas_phage(30.0%)	55	NA	NA
WP_005015810.1|3127318_3128269_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_047122802.1|3128414_3129539_-	bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD	NA	A0A2H4PQS8	Staphylococcus_phage	33.3	3.8e-38
WP_023853315.1|3129744_3130308_+	isochorismatase family protein	NA	NA	NA	NA	NA
WP_003814871.1|3131302_3131785_-	transcriptional repressor NrdR	NA	NA	NA	NA	NA
WP_003814873.1|3131942_3133190_-	serine hydroxymethyltransferase	NA	A0A219YCZ0	Aeromonas_phage	52.7	1.1e-99
WP_003820605.1|3133409_3134066_-	YbhB/YbcL family Raf kinase inhibitor-like protein	NA	NA	NA	NA	NA
WP_003814877.1|3134101_3135331_-|tRNA	tyrosine--tRNA ligase	tRNA	NA	NA	NA	NA
WP_005012067.1|3135598_3136549_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931221.1|3136640_3138056_+	peptidoglycan DD-metalloendopeptidase family protein	NA	A8ATH6	Listeria_phage	46.9	1.9e-18
WP_010931222.1|3138061_3139198_+	anhydro-N-acetylmuramic acid kinase	NA	NA	NA	NA	NA
WP_003814883.1|3139267_3139639_-	iron-sulfur cluster insertion protein ErpA	NA	A0A2H4N7M3	Lake_Baikal_phage	56.9	4.7e-30
WP_010931223.1|3139726_3140473_-	membrane protein	NA	NA	NA	NA	NA
WP_003820599.1|3140509_3141574_-	N-acetyl-gamma-glutamyl-phosphate reductase	NA	NA	NA	NA	NA
WP_010931224.1|3141762_3142155_-	30S ribosomal protein S9	NA	NA	NA	NA	NA
WP_010927106.1|3142164_3142593_-	50S ribosomal protein L13	NA	NA	NA	NA	NA
WP_004567739.1|3142888_3143986_-	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_004567741.1|3144327_3145692_-|protease	metalloprotease PmbA	protease	NA	NA	NA	NA
WP_023853313.1|3145750_3146302_+	ribosome-associated protein	NA	NA	NA	NA	NA
WP_010931226.1|3146315_3146990_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_010931227.1|3148246_3149056_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	37.9	2.6e-33
WP_010931228.1|3149058_3149895_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_003820594.1|3149909_3150602_+	cysteine hydrolase	NA	NA	NA	NA	NA
WP_003820593.1|3150613_3151003_-	VOC family protein	NA	NA	NA	NA	NA
WP_003820592.1|3151108_3152497_-	ATP-dependent RNA helicase DbpA	NA	A0A0N9Q9J4	Chrysochromulina_ericina_virus	33.5	4.6e-54
WP_010931229.1|3152613_3154110_-	membrane protein	NA	NA	NA	NA	NA
WP_005012067.1|3155178_3156129_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931231.1|3156125_3158585_-	bifunctional acetate--CoA ligase family protein/GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_003814917.1|3158681_3160127_+|tRNA	glutamate--tRNA ligase	tRNA	NA	NA	NA	NA
WP_010931233.1|3160130_3161318_-	MFS transporter	NA	NA	NA	NA	NA
WP_023998238.1|3161386_3161896_-	lipoprotein	NA	NA	NA	NA	NA
WP_003814925.1|3162097_3162550_-	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_192855352.1|3162522_3163089_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247415.1|3163111_3166174_+	indolepyruvate ferredoxin oxidoreductase family protein	NA	NA	NA	NA	NA
WP_010931235.1|3166479_3169407_+	ribonucleoside-diphosphate reductase subunit alpha	NA	A0A2H4P767	Pseudomonas_phage	43.9	3.4e-171
WP_003814929.1|3169428_3170625_+	ribonucleotide-diphosphate reductase subunit beta	NA	A0A2H4P762	Pseudomonas_phage	28.9	1.0e-33
WP_010931236.1|3170942_3171470_+	histone H1-like DNA-binding protein	NA	NA	NA	NA	NA
WP_010931237.1|3171608_3172184_+	YggT family protein	NA	NA	NA	NA	NA
WP_010931238.1|3172191_3173655_-	D-alanine--poly(phosphoribitol) ligase	NA	A0A2K9L3I8	Tupanvirus	25.1	7.3e-26
WP_010931239.1|3173665_3174793_-	membrane-bound O-acyltransferase	NA	A0A125RNP0	Pseudomonas_phage	30.8	3.7e-25
WP_003814941.1|3174922_3176050_-	D-alanyl-lipoteichoic acid biosynthesis protein DltD	NA	NA	NA	NA	NA
WP_003814943.1|3176075_3176315_-	acyl carrier protein	NA	NA	NA	NA	NA
WP_010931240.1|3176595_3177099_-	glycine zipper 2TM domain-containing protein	NA	NA	NA	NA	NA
WP_010931241.1|3177271_3178213_-	carbohydrate kinase family protein	NA	NA	NA	NA	NA
WP_010931242.1|3178224_3179322_-	DUF3426 domain-containing protein	NA	NA	NA	NA	NA
WP_003814951.1|3180287_3181634_-	acetyl-CoA carboxylase biotin carboxylase subunit	NA	NA	NA	NA	NA
WP_003814952.1|3181643_3182093_-	acetyl-CoA carboxylase biotin carboxyl carrier protein	NA	NA	NA	NA	NA
WP_003814953.1|3182182_3182617_-	type II 3-dehydroquinate dehydratase	NA	NA	NA	NA	NA
WP_023853327.1|3182695_3183244_-	TlpA family protein disulfide reductase	NA	NA	NA	NA	NA
WP_003814955.1|3183326_3184697_+	UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase	NA	NA	NA	NA	NA
WP_010931244.1|3184707_3185301_+	alpha/beta fold hydrolase	NA	NA	NA	NA	NA
WP_014486102.1|3185372_3187256_+	RNB domain-containing ribonuclease	NA	NA	NA	NA	NA
WP_010931246.1|3187293_3188193_+	TonB family protein	NA	NA	NA	NA	NA
WP_010931247.1|3188189_3189053_+	shikimate dehydrogenase	NA	NA	NA	NA	NA
WP_077070127.1|3189151_3190102_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|3190200_3191151_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 25
NZ_CP011255	Bordetella pertussis strain I344 chromosome, complete genome	4111065	3384658	3438399	4111065	transposase	Staphylococcus_phage(33.33%)	48	NA	NA
WP_010929956.1|3384658_3385609_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931336.1|3386013_3386658_-	urease accessory protein UreG	NA	NA	NA	NA	NA
WP_019247677.1|3386682_3387267_-	urease accessory protein UreF	NA	NA	NA	NA	NA
WP_014905506.1|3387367_3387985_-	urease accessory protein UreE	NA	NA	NA	NA	NA
WP_010931337.1|3387987_3389703_-	urease subunit alpha	NA	NA	NA	NA	NA
WP_010931338.1|3389699_3390008_-	urease subunit beta	NA	NA	NA	NA	NA
WP_003814828.1|3390024_3390642_-	HupE/UreJ family protein	NA	NA	NA	NA	NA
WP_010931340.1|3390686_3390989_-	urease subunit gamma	NA	NA	NA	NA	NA
WP_003814832.1|3391089_3391944_-	urease accessory protein UreD	NA	NA	NA	NA	NA
WP_124740609.1|3392131_3392356_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929281.1|3392525_3392798_+	MerR family DNA-binding transcriptional regulator	NA	NA	NA	NA	NA
WP_010929282.1|3393215_3393623_-	GFA family protein	NA	NA	NA	NA	NA
WP_010931341.1|3393992_3394787_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010927102.1|3394887_3396123_+	methylaspartate ammonia-lyase	NA	NA	NA	NA	NA
WP_003814852.1|3396191_3397208_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931342.1|3397219_3398596_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_003814856.1|3398592_3399789_+	MFS transporter	NA	NA	NA	NA	NA
WP_003814858.1|3399785_3401324_-	SpoVR family protein	NA	NA	NA	NA	NA
WP_010931343.1|3401320_3402580_-	YeaH/YhbH family protein	NA	NA	NA	NA	NA
WP_005012067.1|3404520_3405471_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931344.1|3406237_3407332_-	CoA transferase	NA	NA	NA	NA	NA
WP_019247312.1|3407324_3408659_-	AMP-binding protein	NA	NA	NA	NA	NA
WP_003808193.1|3408612_3409296_-	TetR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003808195.1|3409321_3410485_-	acyl-CoA dehydrogenase family protein	NA	NA	NA	NA	NA
WP_004566224.1|3410481_3411483_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010931346.1|3411482_3412355_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010931347.1|3412351_3413101_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	27.8	1.9e-09
WP_010931348.1|3413097_3413889_-	ATP-binding cassette domain-containing protein	NA	A0A1M7XV31	Cedratvirus	29.4	1.7e-08
WP_010931349.1|3413885_3415025_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_047122778.1|3415300_3416086_+	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_014486103.1|3416119_3416902_+	crotonase/enoyl-CoA hydratase family protein	NA	NA	NA	NA	NA
WP_010931351.1|3416905_3417295_+	OB-fold domain-containing protein	NA	NA	NA	NA	NA
WP_010931352.1|3418434_3419298_+	MaoC family dehydratase N-terminal domain-containing protein	NA	NA	NA	NA	NA
WP_010931353.1|3419333_3420422_+	NAD(P)H-binding protein	NA	NA	NA	NA	NA
WP_005013747.1|3420418_3421369_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247959.1|3421722_3424701_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003818344.1|3425627_3426506_+	fatty acid desaturase	NA	NA	NA	NA	NA
WP_005013747.1|3428454_3429405_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931354.1|3429401_3429869_-	ribonuclease HI	NA	J9Q745	Salmonella_phage	50.7	5.6e-36
WP_010931355.1|3429911_3430682_-	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_010927090.1|3430702_3431503_+	hydroxyacylglutathione hydrolase	NA	NA	NA	NA	NA
WP_010931356.1|3431513_3432923_+	transglycosylase SLT domain-containing protein	NA	NA	NA	NA	NA
WP_003814739.1|3433017_3433803_+	enoyl-ACP reductase FabI	NA	NA	NA	NA	NA
WP_023994644.1|3434042_3435059_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003814742.1|3435166_3435559_-	OsmC family protein	NA	NA	NA	NA	NA
WP_010931357.1|3435696_3436377_+	tellurite resistance TerB family protein	NA	NA	NA	NA	NA
WP_023994844.1|3436381_3437353_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_077070462.1|3437448_3438399_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 26
NZ_CP011255	Bordetella pertussis strain I344 chromosome, complete genome	4111065	3444553	3503853	4111065	tRNA,transposase	Acinetobacter_phage(27.27%)	48	NA	NA
WP_003820957.1|3444553_3446317_+|tRNA	glutamine--tRNA ligase/YqeY domain fusion protein	tRNA	A0A222YZ70	Escherichia_phage	50.0	5.0e-162
WP_010931362.1|3446428_3447307_+	septum site-determining protein MinC	NA	NA	NA	NA	NA
WP_003814250.1|3447419_3448235_+	septum site-determining protein MinD	NA	NA	NA	NA	NA
WP_003814252.1|3448238_3448490_+	cell division topological specificity factor MinE	NA	NA	NA	NA	NA
WP_010930525.1|3448574_3449591_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003814254.1|3449921_3450143_-	glycine zipper 2TM domain-containing protein	NA	NA	NA	NA	NA
WP_019247693.1|3452503_3453421_-	DMT family transporter	NA	NA	NA	NA	NA
WP_019247692.1|3453918_3455127_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931365.1|3455206_3456778_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003814275.1|3456895_3457831_-	glycosyltransferase family 2 protein	NA	NA	NA	NA	NA
WP_003814277.1|3458019_3458964_+	LysR family transcriptional regulator	NA	A0A2P0ZL89	Lactobacillus_phage	23.2	8.4e-07
WP_003814283.1|3459531_3465249_+	excinuclease ABC subunit UvrA	NA	A0A1B1IVR3	uncultured_Mediterranean_phage	39.5	1.0e-195
WP_010931367.1|3465254_3466382_+	aminodeoxychorismate synthase component I	NA	S4VT78	Pandoravirus	37.8	3.8e-38
WP_003814287.1|3466437_3467064_+	aminotransferase class IV	NA	NA	NA	NA	NA
WP_010931363.1|3467335_3468352_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010927020.1|3468447_3469158_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010931368.1|3469154_3470144_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931369.1|3470239_3471871_+	AMP-binding protein	NA	NA	NA	NA	NA
WP_010931370.1|3471873_3472611_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247745.1|3472766_3473639_-|tRNA	tRNA threonylcarbamoyladenosine dehydratase	tRNA	NA	NA	NA	NA
WP_003814298.1|3473907_3475128_+	MFS transporter	NA	NA	NA	NA	NA
WP_003814300.1|3475124_3475784_+	gamma-glutamylcyclotransferase	NA	NA	NA	NA	NA
WP_003814302.1|3475855_3476488_+	pyridoxamine 5'-phosphate oxidase	NA	NA	NA	NA	NA
WP_010931372.1|3476517_3477036_+	flavin reductase family protein	NA	NA	NA	NA	NA
WP_010931373.1|3477046_3478156_+	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_003814312.1|3478202_3479057_+	formyltetrahydrofolate deformylase	NA	NA	NA	NA	NA
WP_010931374.1|3479058_3479961_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|3481183_3482134_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014905441.1|3483890_3484880_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247413.1|3484876_3485035_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931375.1|3485055_3485844_-	indole-3-glycerol phosphate synthase TrpC	NA	A0A0P0IR83	Acinetobacter_phage	53.0	5.1e-66
WP_003817833.1|3485840_3486872_-	anthranilate phosphoribosyltransferase	NA	A0A0N7IRD9	Acinetobacter_phage	42.7	7.4e-73
WP_003815390.1|3486890_3487454_-	aminodeoxychorismate/anthranilate synthase component II	NA	A0A0P0IKJ1	Acinetobacter_phage	62.1	1.1e-65
WP_010931376.1|3487509_3489030_-	anthranilate synthase component I	NA	S4VT78	Pandoravirus	32.1	9.0e-43
WP_010931377.1|3489293_3489998_-	phosphoglycolate phosphatase	NA	NA	NA	NA	NA
WP_003815384.1|3490005_3490743_-	ribulose-phosphate 3-epimerase	NA	NA	NA	NA	NA
WP_003815381.1|3490848_3491223_+	Co2+/Mg2+ efflux protein ApaG	NA	NA	NA	NA	NA
WP_003815379.1|3491265_3492555_+	murein transglycosylase A	NA	NA	NA	NA	NA
WP_010931378.1|3492551_3493721_+	UbiH/UbiF family hydroxylase	NA	NA	NA	NA	NA
WP_010931379.1|3493717_3494557_+	thiol:disulfide interchange protein DsbC	NA	NA	NA	NA	NA
WP_010931380.1|3494616_3495552_+	D-2-hydroxyacid dehydrogenase family protein	NA	A0A1J0F959	Only_Syngen_Nebraska_virus	27.7	6.4e-15
WP_005012067.1|3495564_3496515_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931381.1|3496613_3497576_-|tRNA	tRNA 2-thiocytidine(32) synthetase TtcA	tRNA	A0A0U2S5Z2	Escherichia_phage	64.5	4.6e-93
WP_003817821.1|3497607_3497967_-	dihydroneopterin aldolase	NA	NA	NA	NA	NA
WP_010931382.1|3498091_3498994_+	NAD(P)/FAD-dependent oxidoreductase	NA	G3MA85	Bacillus_virus	24.0	1.9e-08
WP_010931383.1|3498995_3500768_-	M61 family metallopeptidase	NA	NA	NA	NA	NA
WP_003815367.1|3500802_3501579_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_023852617.1|3502902_3503853_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 27
NZ_CP011255	Bordetella pertussis strain I344 chromosome, complete genome	4111065	3518791	3587944	4111065	tRNA,transposase	Planktothrix_phage(10.0%)	55	NA	NA
WP_005012808.1|3518791_3519742_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931392.1|3519870_3521004_-	M20 family metallopeptidase	NA	NA	NA	NA	NA
WP_010931393.1|3521047_3521953_-	hydrolase	NA	NA	NA	NA	NA
WP_023852622.1|3521955_3523656_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	32.7	1.0e-15
WP_010931394.1|3523652_3524573_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_003817805.1|3524580_3525558_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931395.1|3525616_3526651_-	succinylglutamate desuccinylase/aspartoacylase family protein	NA	NA	NA	NA	NA
WP_003815317.1|3528625_3528862_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931396.1|3528988_3529852_-	NAD(P)H-hydrate dehydratase	NA	NA	NA	NA	NA
WP_003815315.1|3529940_3530762_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003815313.1|3530841_3531579_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010931397.1|3531575_3532568_-	nitronate monooxygenase	NA	NA	NA	NA	NA
WP_003817794.1|3532681_3533344_+	TetR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931399.1|3533388_3534537_+	acyl-CoA dehydrogenase family protein	NA	NA	NA	NA	NA
WP_010931400.1|3536860_3537811_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929965.1|3540283_3541210_-	HPr kinase/phosphorylase	NA	NA	NA	NA	NA
WP_010929966.1|3541228_3541684_-	PTS sugar transporter subunit IIA	NA	NA	NA	NA	NA
WP_003815177.1|3542535_3543327_-	LPS export ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	27.4	9.5e-20
WP_003815175.1|3543358_3543979_-	lipopolysaccharide transport periplasmic protein LptA	NA	NA	NA	NA	NA
WP_063389780.1|3543975_3544605_-	LPS export ABC transporter periplasmic protein LptC	NA	NA	NA	NA	NA
WP_003815172.1|3544617_3545226_-	HAD-IIIA family hydrolase	NA	E3T535	Cafeteria_roenbergensis_virus	26.1	5.2e-10
WP_003815171.1|3545222_3546212_-	KpsF/GutQ family sugar-phosphate isomerase	NA	A0A2P0VNK5	Tetraselmis_virus	37.7	4.3e-38
WP_010929968.1|3546317_3547532_+	formate-dependent phosphoribosylglycinamide formyltransferase	NA	NA	NA	NA	NA
WP_005012067.1|3549483_3550434_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929970.1|3551867_3553154_+	putative Na+/H+ antiporter	NA	NA	NA	NA	NA
WP_010929971.1|3553319_3553628_+	FmdB family transcriptional regulator	NA	NA	NA	NA	NA
WP_003807035.1|3553628_3554294_+	DUF502 domain-containing protein	NA	A0A2I7S9X1	Vibrio_phage	28.4	6.7e-11
WP_003807038.1|3554334_3556125_+|tRNA	aspartate--tRNA ligase	tRNA	A0A1V0SAC0	Catovirus	25.5	6.5e-08
WP_010929972.1|3556237_3557098_+	endonuclease/exonuclease/phosphatase family protein	NA	NA	NA	NA	NA
WP_010929973.1|3557094_3558300_+	cardiolipin synthase ClsB	NA	NA	NA	NA	NA
WP_010929974.1|3558296_3559181_-	DMT family transporter	NA	NA	NA	NA	NA
WP_033446233.1|3560697_3561132_-	carbon monoxide dehydrogenase	NA	NA	NA	NA	NA
WP_014905478.1|3561094_3562093_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931408.1|3562204_3563350_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931407.1|3563424_3564753_+	amidase	NA	NA	NA	NA	NA
WP_003815296.1|3564786_3565377_-	cysteine dioxygenase	NA	NA	NA	NA	NA
WP_010931406.1|3565666_3566461_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019249391.1|3567630_3568365_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010931404.1|3568371_3569238_-	copper resistance protein B	NA	NA	NA	NA	NA
WP_029443756.1|3571068_3571566_-	cupredoxin family protein	NA	NA	NA	NA	NA
WP_005013747.1|3571862_3572813_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003815183.1|3574000_3574873_+	RNase adapter RapZ	NA	A0A1P8D5W0	Corynebacterium_phage	34.5	2.4e-08
WP_010929963.1|3574869_3575820_+	septal ring lytic transglycosylase RlpA family protein	NA	F5B3X9	Synechococcus_phage	47.2	6.9e-17
WP_005012067.1|3575918_3576869_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_020699695.1|3576973_3577204_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247263.1|3577330_3577720_-	SRPBCC family protein	NA	NA	NA	NA	NA
WP_010929962.1|3577736_3580118_-	xanthine dehydrogenase family protein molybdopterin-binding subunit	NA	NA	NA	NA	NA
WP_023853194.1|3580110_3581487_-	FAD binding domain-containing protein	NA	A0A0P0IVM8	Acinetobacter_phage	37.3	2.4e-18
WP_010929960.1|3581502_3582498_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003819054.1|3582516_3583509_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003807624.1|3583749_3584310_-	UbiX family flavin prenyltransferase	NA	NA	NA	NA	NA
WP_010929959.1|3584314_3584641_-	Grx4 family monothiol glutaredoxin	NA	NA	NA	NA	NA
WP_010929958.1|3584677_3585490_-	peptide chain release factor N(5)-glutamine methyltransferase	NA	NA	NA	NA	NA
WP_003807618.1|3585500_3586583_-	peptide chain release factor 1	NA	A0A0S4KWG0	Pseudomonas_phage	40.7	3.3e-07
WP_010929957.1|3586669_3587944_-|tRNA	glutamyl-tRNA reductase	tRNA	NA	NA	NA	NA
>prophage 29
NZ_CP011255	Bordetella pertussis strain I344 chromosome, complete genome	4111065	4033236	4086668	4111065	transposase	Planktothrix_phage(40.0%)	45	NA	NA
WP_014486111.1|4033236_4034187_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931662.1|4034356_4035583_+	bifunctional glutamate N-acetyltransferase/amino-acid acetyltransferase ArgJ	NA	NA	NA	NA	NA
WP_010931663.1|4035782_4036649_+	ATP-binding protein	NA	NA	NA	NA	NA
WP_003815027.1|4036641_4037604_+	Nudix family hydrolase	NA	A0A221LFJ1	Barns_Ness_breadcrumb_sponge_sobemo-like_virus	53.4	1.9e-06
WP_010927663.1|4037704_4038655_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929577.1|4038753_4039704_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994937.1|4039700_4041194_-	efflux transporter outer membrane subunit	NA	NA	NA	NA	NA
WP_003815032.1|4041190_4044298_-	multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_010931665.1|4044294_4047363_-	MdtB/MuxB family multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_010931666.1|4047359_4048610_-	MdtA/MuxA family multidrug efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
WP_003815038.1|4048790_4049552_-	cell division protein ZapD	NA	NA	NA	NA	NA
WP_019247320.1|4049584_4050235_-	dephospho-CoA kinase	NA	NA	NA	NA	NA
WP_003820519.1|4050237_4051077_-	prepilin peptidase	NA	NA	NA	NA	NA
WP_003815047.1|4051317_4052061_+	copper resistance protein NlpE N-terminal domain-containing protein	NA	NA	NA	NA	NA
WP_003815049.1|4052143_4052491_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003815051.1|4052588_4053431_-	pantoate--beta-alanine ligase	NA	NA	NA	NA	NA
WP_003815053.1|4053475_4054363_-	segregation/condensation protein A	NA	NA	NA	NA	NA
WP_003815055.1|4054389_4054578_-	DUF3460 family protein	NA	NA	NA	NA	NA
WP_010931669.1|4054675_4056133_+	DHA2 family efflux MFS transporter permease subunit	NA	NA	NA	NA	NA
WP_010931670.1|4056119_4057646_+	glycerol kinase GlpK	NA	NA	NA	NA	NA
WP_003815061.1|4057664_4058132_-	CopD family protein	NA	NA	NA	NA	NA
WP_010931671.1|4058131_4059154_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_169507388.1|4059274_4059994_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	39.9	4.7e-34
WP_003815066.1|4060069_4061170_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003815068.1|4061171_4062362_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003815070.1|4062481_4063498_-	amino acid ABC transporter substrate-binding protein	NA	A0A1B1IT51	uncultured_Mediterranean_phage	42.1	1.0e-71
WP_003815073.1|4063816_4064488_+	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	38.2	9.5e-29
WP_010927126.1|4064484_4065393_+	FtsX-like permease family protein	NA	NA	NA	NA	NA
WP_010931672.1|4065604_4066252_+	chemoreceptor glutamine deamidase CheD	NA	NA	NA	NA	NA
WP_010931673.1|4070103_4071180_+	A/G-specific adenine glycosylase	NA	NA	NA	NA	NA
WP_003815084.1|4071190_4072000_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003815086.1|4072089_4072863_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_010929591.1|4073045_4073996_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929577.1|4074094_4075045_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_077274100.1|4074933_4075956_+	CoA transferase	NA	NA	NA	NA	NA
WP_010931674.1|4075945_4077100_+	CoA transferase	NA	NA	NA	NA	NA
WP_010931675.1|4077139_4078552_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_019247370.1|4078676_4079543_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931677.1|4079544_4080369_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_023853488.1|4080365_4081127_+	nitroreductase	NA	M1I6Q5	Acanthocystis_turfacea_Chlorella_virus	31.0	2.0e-19
WP_003808010.1|4081207_4081894_-	TetR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931679.1|4082067_4083075_+	hydroxymethylglutaryl-CoA lyase	NA	NA	NA	NA	NA
WP_003819309.1|4083071_4083851_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010931680.1|4083908_4085171_+	CoA transferase	NA	NA	NA	NA	NA
WP_010929591.1|4085717_4086668_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
