The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP014975	Salmonella enterica subsp. enterica serovar Typhimurium str. CDC 2009K-1640 isolate USDA-ARS-USMARC-1906 chromosome, complete genome	4933707	1303115	1378310	4933707	lysis,terminase,integrase,tRNA,head,capsid,transposase,portal,holin,tail	Salmonella_phage(38.89%)	86	1295196:1295212	1384157:1384173
1295196:1295212	attL	CGCCTTATCCGGCCTAC	NA	NA	NA	NA
WP_000997368.1|1303115_1304153_+|tRNA	tRNA/rRNA methyltransferase	tRNA	NA	NA	NA	NA
WP_000179978.1|1304268_1304958_-	uracil-DNA glycosylase	NA	A0A172DS90	Canid_alphaherpesvirus	49.5	4.6e-55
WP_000627811.1|1305276_1305660_+	autonomous glycyl radical cofactor GrcA	NA	Q7Y524	Enterobacteria_phage	74.0	6.1e-33
WP_000188414.1|1305721_1306309_-	cysteine/O-acetylserine transporter	NA	NA	NA	NA	NA
WP_001526875.1|1306411_1307311_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_000219174.1|1307328_1308663_-	ATP-dependent RNA helicase SrmB	NA	A0A1B1IS59	uncultured_Mediterranean_phage	29.7	1.6e-43
WP_000083343.1|1308793_1309531_+|tRNA	tRNA(1)(Val) (adenine(37)-N(6))-methyltransferase TrmN	tRNA	NA	NA	NA	NA
WP_022742804.1|1309515_1311138_-	L-aspartate oxidase	NA	NA	NA	NA	NA
WP_014344135.1|1311401_1311566_+	rpoE leader peptide RseD	NA	NA	NA	NA	NA
WP_000003307.1|1311562_1312138_+	RNA polymerase sigma factor RpoE	NA	NA	NA	NA	NA
WP_001168374.1|1312169_1312820_+	anti-sigma-E factor RseA	NA	NA	NA	NA	NA
WP_000812017.1|1312819_1313776_+	sigma-E factor regulatory protein RseB	NA	NA	NA	NA	NA
WP_000589087.1|1313772_1314252_+	SoxR-reducing system protein RseC	NA	NA	NA	NA	NA
WP_022742803.1|1314749_1315979_+|integrase	site-specific integrase	integrase	H6WRW7	Salmonella_phage	93.9	5.4e-232
WP_001670787.1|1315956_1316241_-	excisionase Xis	NA	H6WRW8	Salmonella_phage	86.2	3.1e-42
WP_001237031.1|1316281_1316521_-	DUF4060 family protein	NA	S4TR31	Salmonella_phage	100.0	2.0e-37
WP_022742802.1|1316563_1317721_-	recombinase RecT	NA	S4TTE8	Salmonella_phage	99.7	4.7e-217
WP_022742801.1|1317683_1320611_-	PD-(D/E)XK nuclease-like domain-containing protein	NA	H6WRX1	Salmonella_phage	98.2	0.0e+00
WP_022742800.1|1320737_1321088_-	hypothetical protein	NA	S4TSN6	Salmonella_phage	98.3	6.4e-61
WP_000917563.1|1321109_1321268_-	hypothetical protein	NA	H6WRX3	Salmonella_phage	100.0	2.4e-23
WP_001020640.1|1321621_1322317_-	helix-turn-helix transcriptional regulator	NA	Q8HAA0	Salmonella_phage	99.6	4.6e-127
WP_001191666.1|1322414_1322639_+	helix-turn-helix transcriptional regulator	NA	A0A1C9IHV8	Salmonella_phage	100.0	1.9e-34
WP_023139406.1|1322667_1323222_+	hypothetical protein	NA	A0A1C9II13	Salmonella_phage	99.5	1.2e-101
WP_031609052.1|1323218_1324361_+	Rha family phage regulatory protein	NA	A0A1C9IHV9	Salmonella_phage	98.2	1.0e-208
WP_000620702.1|1324357_1324582_+	hypothetical protein	NA	A0A1C9II64	Salmonella_phage	100.0	3.3e-39
WP_022742797.1|1324578_1325538_+	helix-turn-helix domain-containing protein	NA	U5P0A0	Shigella_phage	80.9	1.2e-117
WP_024150662.1|1325539_1326022_+	PerC family transcriptional regulator	NA	Q8HA95	Salmonella_phage	97.5	1.8e-85
WP_000767086.1|1326910_1327300_+	RusA family crossover junction endodeoxyribonuclease	NA	A0A192Y8N5	Salmonella_phage	97.7	1.6e-68
WP_063316943.1|1327316_1328177_+	KilA-N domain-containing protein	NA	Q8HA92	Salmonella_phage	99.0	6.0e-161
WP_050196634.1|1328184_1329174_+	DUF968 domain-containing protein	NA	A0A1C9IHZ5	Salmonella_phage	97.3	3.5e-189
WP_022742791.1|1329188_1329767_+	DUF1133 family protein	NA	A0A0U2S606	Escherichia_phage	57.2	1.1e-49
WP_022742790.1|1329967_1330693_+	hypothetical protein	NA	A0A0U2KD26	Escherichia_phage	66.2	4.0e-81
WP_024150660.1|1330825_1331251_+	subtilase	NA	NA	NA	NA	NA
WP_023221874.1|1331777_1331966_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001294873.1|1332055_1332445_+|holin	phage holin family protein	holin	K7PHB9	Enterobacterial_phage	72.5	4.8e-41
WP_021000643.1|1332431_1332713_+|holin	phage holin family protein	holin	K7PKN9	Enterobacterial_phage	80.6	2.6e-36
WP_022742788.1|1332712_1333327_+	glycoside hydrolase family 19 protein	NA	Q8HA86	Salmonella_phage	93.6	2.2e-109
WP_050955063.1|1333359_1333806_+|lysis	lysis protein	lysis	A0A0M4RD57	Salmonella_phage	83.9	9.3e-57
WP_031603581.1|1334133_1334637_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000669689.1|1334893_1335295_-	PPC domain-containing protein	NA	NA	NA	NA	NA
WP_001102153.1|1335580_1336126_+|terminase	terminase small subunit	terminase	A0A0U2S671	Escherichia_phage	80.6	1.5e-56
WP_000623088.1|1336097_1338029_+|terminase	phage terminase large subunit family protein	terminase	A0A0K2FJ14	Enterobacteria_phage	65.9	1.3e-259
WP_000201415.1|1338012_1338216_+	gpW family protein	NA	K7PM10	Enterobacteria_phage	73.8	1.9e-17
WP_000831821.1|1338212_1339793_+|portal	phage portal protein	portal	K7P6U7	Enterobacteria_phage	62.8	9.6e-189
WP_001189498.1|1339782_1341279_+	S49 family peptidase	NA	A0A0K2FI53	Enterobacteria_phage	52.2	1.1e-96
WP_000011260.1|1341291_1341639_+|head	head decoration protein	head	A0A2R9YJN3	Escherichia_phage	52.7	9.2e-20
WP_022742784.1|1341693_1342722_+|capsid	major capsid protein	capsid	C6ZCY2	Enterobacteria_phage	61.1	1.3e-114
WP_000201485.1|1342779_1343145_+	DNA-packaging protein FI	NA	NA	NA	NA	NA
WP_000083293.1|1343155_1343533_+|tail	tail attachment protein	tail	A0A0K2FJB7	Enterobacteria_phage	55.6	1.5e-28
WP_000677089.1|1343519_1344098_+|tail	phage tail protein	tail	A5LH33	Enterobacteria_phage	80.2	3.7e-82
WP_022742782.1|1344094_1344496_+	hypothetical protein	NA	Q9G0F3	Phage_Gifsy-1	99.0	4.0e-51
WP_000971953.1|1344503_1345250_+	Ig-like domain-containing protein	NA	A0A291AWU6	Escherichia_phage	76.9	1.9e-99
WP_000479607.1|1345300_1345696_+|tail	phage minor tail protein G	tail	A5LH36	Enterobacteria_phage	56.5	2.3e-30
WP_010989052.1|1345692_1346031_+|tail	phage tail assembly protein T	tail	A5LH37	Enterobacteria_phage	62.4	1.3e-31
WP_022742781.1|1346002_1349098_+|tail	phage tail tape measure protein	tail	A0A291AWX1	Escherichia_phage	61.6	1.1e-276
WP_000447369.1|1349100_1349430_+|tail	phage tail protein	tail	A5LH39	Enterobacteria_phage	70.4	1.3e-42
WP_001152689.1|1349439_1350138_+|tail	phage minor tail protein L	tail	A0A1B5FP81	Escherichia_phage	76.3	5.5e-104
WP_000662739.1|1350144_1350882_+|tail	phage tail protein	tail	K7PLW1	Enterobacteria_phage	85.0	5.2e-129
WP_000246126.1|1350779_1351427_+|tail	tail assembly protein	tail	A5LH42	Enterobacteria_phage	77.7	2.1e-89
WP_000514917.1|1351488_1354851_+	host specificity protein J	NA	K7PKJ2	Enterobacteria_phage	79.7	0.0e+00
WP_000178853.1|1354889_1355132_+	hypothetical protein	NA	NA	NA	NA	NA
WP_022742779.1|1355185_1357558_+|tail	prophage tail fiber N-terminal domain-containing protein	tail	A0A0K2FIZ6	Escherichia_phage	65.4	2.0e-89
WP_000593433.1|1357554_1358379_+	macro domain-containing protein	NA	A0A0M4QWS3	Salmonella_phage	92.0	1.2e-145
WP_000143154.1|1358368_1358947_+|tail	tail fiber assembly protein	tail	A0A0M4RTP2	Salmonella_phage	88.9	3.6e-93
WP_010989049.1|1359043_1359271_-	phage virulence factor PagK family protein	NA	NA	NA	NA	NA
WP_001738443.1|1359377_1359590_+	helix-turn-helix domain-containing protein	NA	S4TTF2	Salmonella_phage	90.6	3.8e-08
WP_001526383.1|1360342_1360462_+|transposase	transposase	transposase	NA	NA	NA	NA
WP_001542312.1|1361174_1361312_-	hypothetical protein	NA	NA	NA	NA	NA
WP_154071814.1|1361316_1361460_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010989047.1|1361832_1363326_-	type III secretion effector GogB	NA	Q9MBM1	Phage_Gifsy-1	100.0	3.4e-260
WP_000790154.1|1363730_1365530_+	elongation factor 4	NA	E4ZFJ7	Streptococcus_phage	24.9	7.2e-23
WP_000002559.1|1365546_1366521_+	signal peptidase I	NA	NA	NA	NA	NA
WP_001068341.1|1366794_1367475_+	ribonuclease III	NA	A0A2K9L5P0	Tupanvirus	31.8	7.4e-21
WP_000102232.1|1367471_1368377_+	GTPase Era	NA	NA	NA	NA	NA
WP_000399380.1|1368388_1369117_+	DNA repair protein RecO	NA	NA	NA	NA	NA
WP_000818972.1|1369128_1369860_+	pyridoxine 5'-phosphate synthase	NA	NA	NA	NA	NA
WP_000986043.1|1369859_1370240_+	holo-ACP synthase	NA	NA	NA	NA	NA
WP_001196290.1|1370351_1370612_-	YfhL family 4Fe-4S dicluster ferredoxin	NA	A0A1B1IWY9	uncultured_Mediterranean_phage	52.3	1.4e-17
WP_001022463.1|1370649_1371576_-	LysR family transcriptional regulator	NA	A0A2P0ZL89	Lactobacillus_phage	24.4	3.0e-09
WP_001276365.1|1371691_1372888_+	OFA family MFS transporter	NA	NA	NA	NA	NA
WP_000684022.1|1372909_1373827_+	oxidoreductase	NA	NA	NA	NA	NA
WP_000995703.1|1373865_1374714_-	MurR/RpiR family transcriptional regulator	NA	NA	NA	NA	NA
WP_001048530.1|1374829_1375723_+	N-acetylmuramic acid 6-phosphate etherase	NA	NA	NA	NA	NA
WP_000361663.1|1375733_1377095_+	PTS transporter subunit EIIC	NA	NA	NA	NA	NA
WP_000253558.1|1377098_1377734_+	phosphatidylglycerophosphatase C	NA	NA	NA	NA	NA
WP_001134566.1|1377758_1378310_+|tRNA	tRNA adenosine(34) deaminase TadA	tRNA	NA	NA	NA	NA
1384157:1384173	attR	GTAGGCCGGATAAGGCG	NA	NA	NA	NA
>prophage 2
NZ_CP014975	Salmonella enterica subsp. enterica serovar Typhimurium str. CDC 2009K-1640 isolate USDA-ARS-USMARC-1906 chromosome, complete genome	4933707	1732460	1762053	4933707	protease,holin,tail	Salmonella_phage(38.46%)	32	NA	NA
WP_000781589.1|1732460_1732955_-|protease	serine protease inhibitor ecotin	protease	NA	NA	NA	NA
WP_000228070.1|1733368_1733860_+	ferredoxin-type protein NapF	NA	NA	NA	NA	NA
WP_001260058.1|1733849_1734113_+	chaperone NapD	NA	NA	NA	NA	NA
WP_000778097.1|1734109_1736596_+	nitrate reductase catalytic subunit NapA	NA	NA	NA	NA	NA
WP_000091673.1|1736602_1737298_+	ferredoxin-type protein NapG	NA	NA	NA	NA	NA
WP_000013529.1|1737284_1738154_+	quinol dehydrogenase ferredoxin subunit NapH	NA	NA	NA	NA	NA
WP_000835182.1|1738269_1738719_+	nitrate reductase cytochrome c-type subunit	NA	NA	NA	NA	NA
WP_000431778.1|1738728_1739331_+	cytochrome c-type protein NapC	NA	NA	NA	NA	NA
WP_000888541.1|1739351_1739969_+	cytochrome c biogenesis heme-transporting ATPase CcmA	NA	A0A2H4PQG7	Staphylococcus_phage	27.2	2.2e-11
WP_000990028.1|1739965_1740625_+	heme exporter protein CcmB	NA	NA	NA	NA	NA
WP_000266008.1|1740676_1741414_+	heme ABC transporter permease	NA	NA	NA	NA	NA
WP_000074110.1|1741410_1741623_+	heme exporter protein CcmD	NA	NA	NA	NA	NA
WP_001053618.1|1741619_1742099_+	cytochrome c maturation protein CcmE	NA	NA	NA	NA	NA
WP_000982518.1|1742095_1744027_+	heme lyase CcmF/NrfE family subunit	NA	NA	NA	NA	NA
WP_000828296.1|1744023_1744581_+	thiol:disulfide interchange protein DsbE	NA	NA	NA	NA	NA
WP_022742763.1|1744577_1745621_+	cytochrome c-type biogenesis protein CcmH	NA	NA	NA	NA	NA
WP_001115498.1|1745664_1746312_-	nitrate/nitrite response regulator protein NarP	NA	NA	NA	NA	NA
WP_000281877.1|1747041_1747605_+	acyloxyacyl hydrolase	NA	NA	NA	NA	NA
WP_001653202.1|1747796_1748000_-	virulence protein MsgA	NA	NA	NA	NA	NA
WP_000624225.1|1748302_1749094_+|tail	tail fiber protein	tail	Q1MVL8	Enterobacteria_phage	31.6	1.7e-48
WP_001113462.1|1749390_1749594_+|tail	tail protein	tail	NA	NA	NA	NA
WP_001115840.1|1749762_1752129_+	SPI-2 type III secretion system effector E3 ubiquitin transferase SspH2	NA	Q9MBL9	Phage_Gifsy-2	88.7	2.9e-72
WP_001202279.1|1752457_1753447_+	DUF968 domain-containing protein	NA	A0A1C9IHZ5	Salmonella_phage	97.3	6.0e-189
WP_010989045.1|1753461_1753830_+	antitermination protein Q	NA	A5LH77	Enterobacteria_phage	81.7	7.4e-52
WP_000894640.1|1753858_1755190_-	AAA family ATPase	NA	R9TRQ8	Vibrio_phage	28.5	2.1e-19
WP_001120499.1|1755486_1755816_+|holin	phage holin, lambda family	holin	Q8SBE1	Shigella_phage	94.6	3.9e-36
WP_000554739.1|1756408_1757650_+	hypothetical protein	NA	Q8HAB4	Salmonella_phage	95.3	1.0e-52
WP_001215679.1|1757652_1758180_+|tail	tail fiber assembly protein	tail	A0A1S6KZZ1	Salmonella_phage	31.3	3.1e-11
WP_000022213.1|1758557_1759001_+|tail	tail fiber assembly protein	tail	A0A0F7LDZ0	Escherichia_phage	43.9	1.4e-28
WP_000639473.1|1759054_1760884_-	acyltransferase	NA	C6ZR20	Salmonella_phage	29.6	3.0e-61
WP_000884778.1|1761231_1761522_-	DinI family protein	NA	S4TND2	Salmonella_phage	83.3	4.7e-25
WP_000806401.1|1761549_1762053_+	LexA family transcriptional regulator	NA	Q1MVE7	Enterobacteria_phage	71.3	9.5e-50
>prophage 3
NZ_CP014975	Salmonella enterica subsp. enterica serovar Typhimurium str. CDC 2009K-1640 isolate USDA-ARS-USMARC-1906 chromosome, complete genome	4933707	1833936	1843107	4933707	tRNA	Enterobacteria_phage(66.67%)	10	NA	NA
WP_000569166.1|1833936_1834884_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	31.2	1.7e-23
WP_000824855.1|1834867_1835599_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_001261696.1|1835579_1835687_-	protein YohO	NA	NA	NA	NA	NA
WP_001240418.1|1835746_1836478_-	HTH-type transcriptional regulator MlrA	NA	Q9EYF2	Enterobacteria_phage	87.9	4.5e-101
WP_000272845.1|1836700_1838386_+	sensor histidine kinase	NA	Q9EYF3	Enterobacteria_phage	91.1	6.2e-279
WP_000598637.1|1838382_1839102_+	two-component system response regulator BtsR	NA	NA	NA	NA	NA
WP_000950413.1|1839148_1839616_+	DUF1456 family protein	NA	Q9EYF4	Enterobacteria_phage	90.3	3.9e-74
WP_001197952.1|1839672_1840203_-	YehR family lipoprotein	NA	NA	NA	NA	NA
WP_000703137.1|1840374_1840833_-	YehR family lipoprotein	NA	Q9EYF5	Enterobacteria_phage	72.5	8.4e-53
WP_000195332.1|1841073_1843107_-|tRNA	methionine--tRNA ligase	tRNA	A0A1V0SDF2	Indivirus	27.6	1.0e-54
>prophage 4
NZ_CP014975	Salmonella enterica subsp. enterica serovar Typhimurium str. CDC 2009K-1640 isolate USDA-ARS-USMARC-1906 chromosome, complete genome	4933707	1911415	1921921	4933707		Enterobacteria_phage(37.5%)	10	NA	NA
WP_001111841.1|1911415_1912819_+	colanic acid biosynthesis protein WcaM	NA	A0A291LBB9	Klebsiella_phage	27.1	3.1e-21
WP_000981469.1|1912996_1913890_+	GalU regulator GalF	NA	A0A127AW70	Bacillus_phage	42.2	4.8e-44
WP_000697840.1|1914266_1915352_+	dTDP-glucose 4,6-dehydratase	NA	I7HTA3	Enterobacteria_phage	53.9	1.2e-102
WP_001023662.1|1915351_1916251_+	dTDP-4-dehydrorhamnose reductase	NA	A0A291LA50	Escherichia_phage	36.3	1.4e-30
WP_000857529.1|1916298_1917177_+	glucose-1-phosphate thymidylyltransferase RfbA	NA	I7I009	Enterobacteria_phage	65.5	9.3e-109
WP_000973708.1|1917177_1917729_+	dTDP-4-dehydrorhamnose 3,5-epimerase	NA	I7HJC4	Enterobacteria_phage	58.0	2.2e-52
WP_000018226.1|1917734_1918727_+	CDP-6-deoxy-delta-3,4-glucoseen reductase	NA	NA	NA	NA	NA
WP_000648784.1|1918723_1919497_+	glucose-1-phosphate cytidylyltransferase	NA	NA	NA	NA	NA
WP_000565905.1|1919501_1920581_+	CDP-glucose 4,6-dehydratase	NA	A0A222YY99	Synechococcus_phage	24.1	6.6e-16
WP_000126349.1|1920607_1921921_+	lipopolysaccharide biosynthesis protein RfbH	NA	H8ZJ36	Ostreococcus_tauri_virus	35.1	7.0e-52
>prophage 5
NZ_CP014975	Salmonella enterica subsp. enterica serovar Typhimurium str. CDC 2009K-1640 isolate USDA-ARS-USMARC-1906 chromosome, complete genome	4933707	2008626	2058692	4933707	terminase,plate,integrase,head,protease,capsid,portal,holin,tail	Salmonella_phage(86.15%)	69	2003204:2003218	2019334:2019348
2003204:2003218	attL	AATCAGCGCCTGCTG	NA	NA	NA	NA
WP_001219015.1|2008626_2009100_-	peptidase	NA	A0A0F6TJ61	Escherichia_coli_O157_typing_phage	77.6	7.1e-39
WP_000598920.1|2010409_2011207_-	DgsA anti-repressor MtfA	NA	NA	NA	NA	NA
WP_000532847.1|2011498_2012488_-|integrase	tyrosine-type recombinase/integrase	integrase	A0A192Y7M7	Salmonella_phage	100.0	8.6e-196
WP_001527041.1|2012489_2012717_-	DUF4224 domain-containing protein	NA	Q8HAA9	Salmonella_phage	100.0	3.2e-37
WP_001061334.1|2012756_2013326_-	3'-5' exoribonuclease	NA	A0A192Y6E0	Salmonella_phage	100.0	7.1e-110
WP_020899398.1|2013329_2013911_-	hypothetical protein	NA	A0A192Y6F5	Salmonella_phage	100.0	4.7e-109
WP_000224241.1|2013921_2014179_-	hypothetical protein	NA	A0A192Y5W0	Salmonella_phage	100.0	1.3e-42
WP_000215886.1|2014180_2014714_-	hypothetical protein	NA	A0A192Y7N1	Salmonella_phage	100.0	2.5e-101
WP_000008351.1|2014784_2015324_-	hypothetical protein	NA	A0A192Y8M4	Salmonella_phage	100.0	2.6e-98
WP_000080416.1|2015460_2016288_-	DUF2303 family protein	NA	A0A192Y6E5	Salmonella_phage	100.0	2.6e-153
WP_000997191.1|2016345_2016717_-	hypothetical protein	NA	A0A192Y6G0	Salmonella_phage	100.0	2.5e-63
WP_023891434.1|2017256_2017481_+	hypothetical protein	NA	A0A1C9IHY8	Salmonella_phage	100.0	1.6e-33
WP_001067432.1|2017443_2017782_-	hypothetical protein	NA	A0A1C9IHZ4	Salmonella_phage	100.0	7.0e-57
WP_001020640.1|2017987_2018683_-	helix-turn-helix transcriptional regulator	NA	Q8HAA0	Salmonella_phage	99.6	4.6e-127
WP_001191666.1|2018780_2019005_+	helix-turn-helix transcriptional regulator	NA	A0A1C9IHV8	Salmonella_phage	100.0	1.9e-34
WP_000509731.1|2019033_2019588_+	hypothetical protein	NA	A0A1C9II13	Salmonella_phage	100.0	6.9e-102
2019334:2019348	attR	AATCAGCGCCTGCTG	NA	NA	NA	NA
WP_001087402.1|2019584_2020742_+	Rha family phage regulatory protein	NA	Q8HA97	Salmonella_phage	100.0	4.2e-218
WP_000620702.1|2020738_2020963_+	hypothetical protein	NA	A0A1C9II64	Salmonella_phage	100.0	3.3e-39
WP_000061500.1|2020959_2021778_+	helix-turn-helix domain-containing protein	NA	Q8HA96	Salmonella_phage	100.0	2.8e-136
WP_001684745.1|2021779_2022262_+	PerC family transcriptional regulator	NA	Q8HA95	Salmonella_phage	100.0	1.1e-87
WP_000066908.1|2022261_2023155_+	phage N-6-adenine-methyltransferase	NA	Q8HA94	Salmonella_phage	100.0	7.6e-175
WP_001241579.1|2023151_2023541_+	RusA family crossover junction endodeoxyribonuclease	NA	Q8HA93	Salmonella_phage	100.0	3.7e-70
WP_020899399.1|2023557_2024418_+	KilA-N domain-containing protein	NA	Q8HA92	Salmonella_phage	99.7	8.4e-163
WP_020899400.1|2024425_2025415_+	DUF968 domain-containing protein	NA	A0A1C9IHZ5	Salmonella_phage	99.1	4.0e-193
WP_020899401.1|2025428_2026181_+	antitermination protein	NA	A0A192Y5X6	Salmonella_phage	100.0	1.8e-145
WP_001624505.1|2026331_2026589_+	hypothetical protein	NA	A0A1C9IHX4	Salmonella_phage	100.0	3.1e-41
WP_001283169.1|2026734_2027121_+|holin	phage holin family protein	holin	A0A192Y8P2	Salmonella_phage	100.0	7.0e-61
WP_000422366.1|2027107_2027389_+|holin	phage holin family protein	holin	K7PKN9	Enterobacterial_phage	45.2	9.7e-20
WP_001624504.1|2027388_2028003_+	glycoside hydrolase family 19 protein	NA	A0A192Y6G4	Salmonella_phage	100.0	5.7e-113
WP_001530346.1|2027999_2028392_+	DUF2570 domain-containing protein	NA	A0A192Y6H8	Salmonella_phage	100.0	2.8e-65
WP_001379492.1|2028854_2029187_+	hypothetical protein	NA	A0A192Y5Y1	Salmonella_phage	100.0	2.8e-58
WP_001135098.1|2029237_2029588_+	HNH endonuclease	NA	M1FQV2	Enterobacteria_phage	94.8	9.8e-62
WP_000929171.1|2029713_2030208_+|terminase	phage terminase small subunit P27 family	terminase	A0A1B3B2F4	Salmonella_phage	100.0	1.7e-88
WP_000088175.1|2030204_2031938_+|terminase	terminase large subunit	terminase	U5P0Q5	Shigella_phage	98.3	0.0e+00
WP_000605609.1|2031949_2032132_+	hypothetical protein	NA	Q8HAD5	Salmonella_phage	100.0	1.0e-25
WP_020899404.1|2032131_2033373_+|portal	phage portal protein	portal	Q8HAD4	Salmonella_phage	99.3	2.9e-241
WP_001193639.1|2033350_2034001_+|head,protease	HK97 family phage prohead protease	head,protease	Q8HAD3	Salmonella_phage	100.0	1.5e-119
WP_000257526.1|2034015_2035221_+|capsid	phage major capsid protein	capsid	A0A192Y5T6	Salmonella_phage	100.0	7.0e-224
WP_000601352.1|2035271_2035472_+	hypothetical protein	NA	A0A192Y7K5	Salmonella_phage	100.0	1.8e-28
WP_000927378.1|2035474_2035798_+|head,tail	phage gp6-like head-tail connector protein	head,tail	A0A192Y8J4	Salmonella_phage	100.0	6.3e-55
WP_000702410.1|2035794_2036199_+|head	phage head closure protein	head	A0A192Y6C2	Salmonella_phage	100.0	3.2e-72
WP_001135699.1|2036170_2036683_+	hypothetical protein	NA	A0A192Y6D2	Salmonella_phage	100.0	3.5e-92
WP_000779216.1|2036679_2037240_+	hypothetical protein	NA	A0A192Y5U4	Salmonella_phage	100.0	8.0e-106
WP_000497740.1|2037243_2037408_+	DUF2635 domain-containing protein	NA	A0A1C9II04	Salmonella_phage	100.0	1.3e-24
WP_001007996.1|2037397_2038894_+|tail	phage tail sheath subtilisin-like domain-containing protein	tail	A0A192Y7L1	Salmonella_phage	100.0	2.1e-278
WP_000515952.1|2038893_2039250_+|tail	phage tail tube protein	tail	A0A192Y8K0	Salmonella_phage	100.0	2.6e-62
WP_022742746.1|2039279_2039573_+	hypothetical protein	NA	A0A192Y6C5	Salmonella_phage	100.0	2.6e-47
WP_000785390.1|2039657_2041586_+|tail	phage tail tape measure protein	tail	A0A192Y6D8	Salmonella_phage	100.0	0.0e+00
WP_063316946.1|2041619_2042960_+	DNA circularization N-terminal domain-containing protein	NA	A0A192Y5U9	Salmonella_phage	99.8	3.3e-251
WP_001066630.1|2042956_2044015_+|plate	baseplate protein	plate	A0A192Y7L7	Salmonella_phage	100.0	1.3e-202
WP_001273648.1|2044014_2044548_+|plate	phage baseplate assembly protein	plate	A0A192Y8K5	Salmonella_phage	100.0	8.4e-97
WP_000605051.1|2044552_2044966_+	phage GP46 family protein	NA	A0A192Y6D0	Salmonella_phage	100.0	3.1e-75
WP_000785578.1|2044958_2046038_+|plate	baseplate J/gp47 family protein	plate	A0A192Y6E4	Salmonella_phage	100.0	2.9e-205
WP_001207832.1|2046040_2046628_+	DUF2313 domain-containing protein	NA	A0A192Y5V3	Salmonella_phage	100.0	2.9e-114
WP_020899405.1|2046614_2048177_+	hypothetical protein	NA	A0A192Y7M1	Salmonella_phage	100.0	1.0e-288
WP_022742744.1|2048146_2048752_+|tail	tail fiber assembly protein	tail	A0A192Y8L2	Salmonella_phage	100.0	2.7e-107
WP_000836773.1|2048865_2049099_-	hypothetical protein	NA	A0A192Y6D5	Salmonella_phage	100.0	1.2e-36
WP_122815478.1|2049173_2049287_-	hypothetical protein	NA	A0A1C9IHU6	Salmonella_phage	100.0	4.3e-11
WP_000842532.1|2049334_2049748_-	hypothetical protein	NA	A0A192Y6F0	Salmonella_phage	100.0	2.9e-73
WP_001093793.1|2049744_2049957_-	hypothetical protein	NA	A0A192Y5V6	Salmonella_phage	100.0	2.7e-30
WP_000500831.1|2051150_2051312_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000394196.1|2051438_2051858_+	translesion error-prone DNA polymerase V autoproteolytic subunit	NA	A0A1W6JNS2	Morganella_phage	60.5	8.5e-36
WP_000457662.1|2051860_2053129_+	Y-family DNA polymerase	NA	I6RSM4	Salmonella_phage	92.2	4.2e-227
WP_000208509.1|2053583_2053796_+	cold-shock protein	NA	A0A1W6JNX5	Morganella_phage	70.0	3.9e-21
WP_024131109.1|2053806_2053995_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001080680.1|2054255_2055452_-	porin OmpS1	NA	Q1MVN1	Enterobacteria_phage	56.1	1.8e-110
WP_000107430.1|2056101_2056401_+	membrane protein	NA	NA	NA	NA	NA
WP_000377041.1|2056492_2057188_+	phosphohydrolase	NA	A0A1D6Y7U0	Golden_Marseillevirus	27.1	2.8e-07
WP_001157322.1|2057261_2058692_+	DNA cytosine methyltransferase	NA	E5E3X6	Burkholderia_phage	57.4	1.0e-104
>prophage 6
NZ_CP014975	Salmonella enterica subsp. enterica serovar Typhimurium str. CDC 2009K-1640 isolate USDA-ARS-USMARC-1906 chromosome, complete genome	4933707	2162736	2239666	4933707	lysis,terminase,plate,integrase,head,protease,transposase,holin,tail	Edwardsiella_phage(16.36%)	98	2200205:2200220	2222431:2222446
WP_000856224.1|2162736_2162967_-	DNA polymerase III subunit theta	NA	H9C187	Pectobacterium_phage	60.3	2.9e-14
WP_000168393.1|2163104_2163479_+	CopC domain-containing protein YobA	NA	NA	NA	NA	NA
WP_000979702.1|2163479_2164355_+	copper homeostasis membrane protein CopD	NA	NA	NA	NA	NA
WP_000722368.1|2164371_2164725_+	YebY family protein	NA	NA	NA	NA	NA
WP_022742740.1|2165107_2166187_-|integrase	phage integrase Arm DNA-binding domain-containing protein	integrase	A0A2H4IYC8	uncultured_Caudovirales_phage	52.8	1.3e-101
WP_001575998.1|2166161_2166440_-	excisionase	NA	A0A2H4J5E1	uncultured_Caudovirales_phage	37.5	1.4e-10
WP_022742739.1|2166500_2166929_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023139359.1|2167027_2167207_-	DUF1187 family protein	NA	A0A0U2QL97	Escherichia_phage	60.3	7.3e-13
WP_023139358.1|2167817_2168150_-	hypothetical protein	NA	S4TNP2	Salmonella_phage	72.7	8.5e-15
WP_001033921.1|2168142_2168463_-	hypothetical protein	NA	A0A222YY67	Escherichia_phage	60.2	3.6e-34
WP_001534364.1|2168498_2169329_-	recombination protein RecT	NA	A0A1P8DTF2	Proteus_phage	72.0	1.0e-104
WP_022742735.1|2169321_2172012_-	exodeoxyribonuclease VIII	NA	Q9QF34	Lambdoid_phage	75.6	2.2e-116
WP_000799627.1|2172152_2172488_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000682660.1|2172563_2172770_-	cell division inhibitor protein	NA	I6PBM9	Cronobacter_phage	45.6	3.0e-10
WP_000103933.1|2172773_2173049_-	hypothetical protein	NA	NA	NA	NA	NA
WP_024135672.1|2173309_2173489_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001574209.1|2173919_2174318_-	helix-turn-helix domain-containing protein	NA	K7PH19	Enterobacteria_phage	56.0	1.2e-18
WP_001033911.1|2174416_2174671_+	helix-turn-helix transcriptional regulator	NA	K7PKH4	Enterobacteria_phage	60.9	5.3e-17
WP_001534383.1|2174657_2175152_+	hypothetical protein	NA	NA	NA	NA	NA
WP_022742734.1|2175195_2176203_+	DUF1376 domain-containing protein	NA	A0A0U2RT81	Escherichia_phage	67.5	1.8e-124
WP_157872077.1|2176114_2176657_+	replication protein	NA	A0A0U2JGJ0	Escherichia_phage	74.8	7.1e-67
WP_022742732.1|2176669_2177065_+	DUF977 family protein	NA	A0A088CBK9	Shigella_phage	37.0	6.4e-17
WP_023139357.1|2177061_2177334_+	hypothetical protein	NA	NA	NA	NA	NA
WP_024150652.1|2177540_2177693_+	Hok/Gef family protein	NA	NA	NA	NA	NA
WP_023139356.1|2177942_2178191_+	hypothetical protein	NA	NA	NA	NA	NA
WP_022742730.1|2178254_2178854_+	DUF1367 family protein	NA	A0A0U2RT94	Escherichia_phage	83.9	5.0e-98
WP_021000145.1|2178850_2179045_+	hypothetical protein	NA	S4TNP0	Salmonella_phage	61.5	6.1e-13
WP_023139355.1|2179041_2179353_+	DUF1364 family protein	NA	K7P7Q1	Enterobacteria_phage	84.8	6.1e-39
WP_023139354.1|2179692_2180034_+	antitermination protein from phage origin	NA	A0A0P0ZCW0	Stx2-converting_phage	84.1	1.1e-54
WP_023139353.1|2180582_2181512_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023139352.1|2181989_2182196_+	hypothetical protein	NA	NA	NA	NA	NA
WP_022742726.1|2182186_2182732_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000502119.1|2183009_2183468_+|transposase	IS200/IS605-like element IS200F family transposase	transposase	A0A1S5RHE3	Helicobacter_phage	33.9	5.1e-10
WP_001526513.1|2183634_2183937_+|holin	phage holin family protein	holin	NA	NA	NA	NA
WP_001208103.1|2183914_2184403_+	lysozyme	NA	M9P0E5	Enterobacteria_phage	68.1	2.1e-57
WP_085983312.1|2184423_2184864_+|lysis	lysis protein	lysis	A0A0M4RD57	Salmonella_phage	84.3	3.5e-56
WP_001113128.1|2185089_2185272_+	DUF826 domain-containing protein	NA	NA	NA	NA	NA
WP_022742724.1|2185342_2186095_+	hypothetical protein	NA	G8C7P2	Escherichia_phage	75.6	5.3e-12
WP_022742723.1|2186060_2187482_+|terminase	PBSX family phage terminase large subunit	terminase	A0A077KAW0	Edwardsiella_phage	68.0	1.8e-186
WP_023139350.1|2187481_2189002_+	DUF1073 domain-containing protein	NA	A0A2R3UAL5	Myoviridae_environmental_samples	44.4	7.5e-106
WP_000552017.1|2189042_2189732_+|head	head morphogenesis protein	head	H9C0V1	Aeromonas_phage	49.6	4.5e-58
WP_023139349.1|2189728_2191075_+	DUF2213 domain-containing protein	NA	A0A219YCD3	Aeromonas_phage	37.4	3.2e-68
WP_001525451.1|2191076_2191559_+	hypothetical protein	NA	A0A1X9SFC3	Acinetobacter_phage	48.8	1.1e-26
WP_001031915.1|2191558_2192587_+	hypothetical protein	NA	A0A219YBB0	Aeromonas_phage	48.7	2.3e-82
WP_001748493.1|2192590_2192938_+	hypothetical protein	NA	H9C0V9	Aeromonas_phage	40.2	3.0e-10
WP_023139348.1|2192944_2193400_+	DUF4054 domain-containing protein	NA	Q2NPC6	Xanthomonas_phage	46.0	1.2e-19
WP_022742718.1|2193393_2193978_+	hypothetical protein	NA	H9C0W2	Aeromonas_phage	30.6	3.2e-17
WP_001748490.1|2193974_2194340_+	hypothetical protein	NA	A0A077KAW7	Edwardsiella_phage	39.7	8.8e-21
WP_000094504.1|2194324_2194870_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001748488.1|2194850_2196335_+	DUF3383 domain-containing protein	NA	A0A077KGV4	Edwardsiella_phage	41.0	4.0e-96
WP_000016414.1|2196335_2196782_+	hypothetical protein	NA	Q2NPD1	Xanthomonas_phage	40.4	4.8e-21
WP_000101348.1|2196781_2197186_+	hypothetical protein	NA	H9C0W7	Aeromonas_phage	44.8	1.8e-19
WP_000228831.1|2197227_2197410_+	hypothetical protein	NA	NA	NA	NA	NA
WP_022742717.1|2197393_2199565_+	transglycosylase SLT domain-containing protein	NA	A0A0M4REK7	Salmonella_phage	67.1	1.4e-49
WP_022742716.1|2199561_2200272_+	hypothetical protein	NA	A0A077KGW3	Edwardsiella_phage	34.6	6.5e-28
2200205:2200220	attL	TTACGGCGTCGGTGAC	NA	NA	NA	NA
WP_000890115.1|2200271_2200574_+	hypothetical protein	NA	A0A077K9U4	Edwardsiella_phage	49.5	7.0e-24
WP_000122818.1|2200570_2201440_+	hypothetical protein	NA	A0A077KC17	Edwardsiella_phage	32.7	9.1e-32
WP_022742715.1|2201420_2202098_+	hypothetical protein	NA	A0A077KAY0	Edwardsiella_phage	35.5	4.6e-31
WP_001191865.1|2202110_2202467_+	hypothetical protein	NA	A0A077KCA1	Edwardsiella_phage	49.1	1.6e-19
WP_022742714.1|2202463_2203705_+|plate	baseplate J/gp47 family protein	plate	A0A077KGW9	Edwardsiella_phage	49.6	4.5e-101
WP_022742713.1|2203706_2204309_+	DUF2612 domain-containing protein	NA	H9C0Y0	Aeromonas_phage	43.2	5.9e-30
WP_022742712.1|2204298_2205750_+|tail	tail fiber protein	tail	E5G6P0	Salmonella_phage	71.2	2.9e-43
WP_022742711.1|2205749_2206325_+|tail	tail fiber assembly protein	tail	A0A0M4RTP2	Salmonella_phage	89.5	2.9e-95
WP_024150649.1|2206707_2207403_+	hypothetical protein	NA	NA	NA	NA	NA
WP_022742709.1|2207403_2208060_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_022742708.1|2208590_2209490_-	SMEK domain-containing protein	NA	NA	NA	NA	NA
WP_022742707.1|2209752_2210895_-	lipopolysaccharide N-acetylglucosaminyltransferase	NA	NA	NA	NA	NA
WP_176731523.1|2211802_2212645_-|integrase	tyrosine-type recombinase/integrase	integrase	A0A2H4IYC8	uncultured_Caudovirales_phage	50.9	3.3e-71
WP_010989030.1|2212716_2213211_-	hypothetical protein	NA	A0A0U2I1R6	Escherichia_phage	68.9	8.2e-22
WP_001013467.1|2213400_2213631_+	hypothetical protein	NA	Q8HA86	Salmonella_phage	93.7	6.1e-28
WP_001050882.1|2213684_2214218_+	DUF2514 domain-containing protein	NA	A0A291LBG9	Klebsiella_phage	48.3	1.4e-11
WP_000789530.1|2214474_2214642_-	lytic enzyme	NA	NA	NA	NA	NA
WP_001521334.1|2214706_2214895_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000275418.1|2215367_2216249_+|tail	tail fiber assembly protein	tail	A0A0M4RTP2	Salmonella_phage	76.0	2.2e-65
WP_010989029.1|2216345_2216546_-	phage virulence factor PagK family protein	NA	NA	NA	NA	NA
WP_000457876.1|2217115_2217241_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001520350.1|2217754_2217901_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000848069.1|2218388_2219003_-	disulfide bond formation protein B	NA	NA	NA	NA	NA
WP_000480735.1|2219012_2219171_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001233446.1|2219303_2220218_-	DMT family transporter	NA	NA	NA	NA	NA
WP_000684835.1|2221521_2221890_-|integrase	tyrosine-type recombinase/integrase	integrase	K7PHK0	Enterobacteria_phage	39.8	5.4e-18
WP_001617922.1|2223353_2223494_-	hypothetical protein	NA	NA	NA	NA	NA
2222431:2222446	attR	GTCACCGACGCCGTAA	NA	NA	NA	NA
WP_001752421.1|2223659_2223929_-	hypothetical protein	NA	Q6UAV5	Klebsiella_phage	39.0	1.5e-06
WP_000354408.1|2224298_2224718_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_000030934.1|2225105_2225582_-	hypothetical protein	NA	NA	NA	NA	NA
WP_022742706.1|2225911_2226307_-	DUF1398 domain-containing protein	NA	C6ZCX4	Enterobacteria_phage	32.0	6.0e-15
WP_000182072.1|2226990_2227713_+	SPI-1 type III secretion system guanine nucleotide exchange factor SopE2	NA	NA	NA	NA	NA
WP_001134856.1|2227997_2228162_+	membrane protein	NA	NA	NA	NA	NA
WP_000986176.1|2228385_2229036_+	protein-serine/threonine phosphatase	NA	A0A222YWF0	Escherichia_phage	51.4	1.1e-58
WP_000457836.1|2229054_2229246_-	YebW family protein	NA	NA	NA	NA	NA
WP_024131108.1|2229356_2229593_-	DUF1480 family protein	NA	NA	NA	NA	NA
WP_001542138.1|2229710_2231150_-	16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF	NA	NA	NA	NA	NA
WP_001535256.1|2231227_2233861_-	PqiB family protein	NA	NA	NA	NA	NA
WP_001207294.1|2233829_2235113_-	membrane integrity lipid transport subunit YebS	NA	NA	NA	NA	NA
WP_001518229.1|2235241_2235739_+	GAF domain-containing protein	NA	NA	NA	NA	NA
WP_000431401.1|2235836_2236523_+	RNA chaperone ProQ	NA	NA	NA	NA	NA
WP_001091237.1|2236542_2238591_+	carboxy terminal-processing peptidase	NA	A0A0R6PIZ1	Moraxella_phage	33.5	8.0e-87
WP_000984498.1|2238784_2239666_+|protease	protease HtpX	protease	NA	NA	NA	NA
>prophage 7
NZ_CP014975	Salmonella enterica subsp. enterica serovar Typhimurium str. CDC 2009K-1640 isolate USDA-ARS-USMARC-1906 chromosome, complete genome	4933707	3003361	3102170	4933707	lysis,terminase,tRNA,protease,portal,holin,tail	Salmonella_phage(41.82%)	99	NA	NA
WP_000938191.1|3003361_3004042_+|protease	type III secretion system effector protease PipA	protease	Q9MBM0	Phage_Gifsy-2	70.6	8.3e-81
WP_000374050.1|3004662_3005322_+|protease	FtsH protease modulator YccA	protease	A0A2H4JFM9	uncultured_Caudovirales_phage	51.9	2.3e-43
WP_000904446.1|3005408_3005738_+	sulfurtransferase TusE	NA	NA	NA	NA	NA
WP_000072884.1|3005734_3006016_-	acylphosphatase	NA	NA	NA	NA	NA
WP_000548082.1|3006064_3006844_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_000859419.1|3006869_3007418_-	YbhB/YbcL family Raf kinase inhibitor-like protein	NA	NA	NA	NA	NA
WP_000140480.1|3007632_3008844_+	23S rRNA (cytosine(1962)-C(5))-methyltransferase RlmI	NA	NA	NA	NA	NA
WP_000561983.1|3008901_3009219_+	heat shock protein HspQ	NA	NA	NA	NA	NA
WP_001537782.1|3009263_3009677_-	CoA-binding protein	NA	NA	NA	NA	NA
WP_000847719.1|3009850_3010513_+	DUF2057 family protein	NA	NA	NA	NA	NA
WP_000424187.1|3010607_3011066_+	methylglyoxal synthase	NA	NA	NA	NA	NA
WP_000420505.1|3011101_3013156_-	DNA helicase IV	NA	A7KV33	Bacillus_phage	27.6	8.5e-20
WP_001261222.1|3013279_3013726_+	YccF domain-containing protein	NA	NA	NA	NA	NA
WP_000950880.1|3013744_3015898_+	TIGR01666 family membrane protein	NA	NA	NA	NA	NA
WP_001202375.1|3015884_3016490_-	TfoX/Sxy family DNA transformation protein	NA	NA	NA	NA	NA
WP_000288732.1|3016706_3017216_+	cell division inhibitor SulA	NA	NA	NA	NA	NA
WP_001674965.1|3017572_3018625_+	porin OmpA	NA	NA	NA	NA	NA
WP_000877172.1|3018696_3019149_-	macrodomain Ter protein MatP	NA	NA	NA	NA	NA
WP_000156454.1|3019334_3021095_+|protease	Lon protease family protein	protease	NA	NA	NA	NA
WP_000227928.1|3021163_3021682_+	bifunctional 3-hydroxydecanoyl-ACP dehydratase/trans-2-decenoyl-ACP isomerase	NA	NA	NA	NA	NA
WP_001537784.1|3021781_3021949_-	ribosome modulation factor	NA	NA	NA	NA	NA
WP_000759136.1|3022204_3022768_-	membrane integrity-associated transporter subunit PqiC	NA	NA	NA	NA	NA
WP_000433414.1|3022764_3024405_-	intermembrane transport protein PqiB	NA	NA	NA	NA	NA
WP_000333152.1|3024409_3025663_-	membrane integrity-associated transporter subunit PqiA	NA	NA	NA	NA	NA
WP_000053044.1|3025677_3027585_-	ABC transporter ATP-binding protein	NA	A0A2K9L3Z8	Tupanvirus	29.8	2.4e-53
WP_001086485.1|3027597_3029706_-	bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL	NA	NA	NA	NA	NA
WP_000224069.1|3029804_3030914_+	YcbX family protein	NA	NA	NA	NA	NA
WP_001220671.1|3030910_3031453_-	cell division protein ZapC	NA	NA	NA	NA	NA
WP_022742665.1|3031618_3032629_-	quinone-dependent dihydroorotate dehydrogenase	NA	NA	NA	NA	NA
WP_000193784.1|3032836_3035449_-	aminopeptidase N	NA	A0A0P0IY26	Acinetobacter_phage	22.6	6.3e-20
WP_000497441.1|3035875_3036067_+	DinI-like family protein	NA	S4TNM0	Salmonella_phage	95.2	6.2e-26
WP_001525490.1|3036337_3037024_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010989011.1|3037008_3037308_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000334547.1|3037376_3038003_+	SOS response-associated peptidase	NA	A0A2H4J5W2	uncultured_Caudovirales_phage	63.2	1.4e-66
WP_001533476.1|3038650_3039619_-	SPI-2 type III secretion system effector SseI	NA	Q9MBL9	Phage_Gifsy-2	99.7	7.9e-194
WP_022742661.1|3040094_3040676_-|tail	tail fiber assembly protein	tail	A0A0M4RTP2	Salmonella_phage	88.5	3.3e-94
WP_022742660.1|3040675_3043114_-|tail	prophage tail fiber N-terminal domain-containing protein	tail	A0A0K2FIZ6	Escherichia_phage	63.6	1.7e-91
WP_000178849.1|3043167_3043410_-	hypothetical protein	NA	NA	NA	NA	NA
WP_022742659.1|3043448_3045914_-	host specificity protein J	NA	A0A0K2FI38	Escherichia_phage	66.6	9.8e-265
WP_022742658.1|3045906_3046800_-	host specificity protein J	NA	A0A2I6TCW5	Escherichia_phage	73.3	2.4e-128
WP_000246065.1|3046871_3047576_-|tail	tail assembly protein	tail	A5LH42	Enterobacteria_phage	62.6	9.2e-67
WP_022742655.1|3048220_3048916_-|tail	phage minor tail protein L	tail	A0A0K2FJ01	Enterobacteria_phage	66.2	6.5e-89
WP_000877926.1|3049005_3049539_+	superoxide dismutase [Cu-Zn]	NA	Q9MC02	Salmonella_phage	54.0	1.8e-46
WP_000725267.1|3049655_3050153_-	Ail/Lom family outer membrane beta-barrel protein	NA	A0A1B0VBR9	Salmonella_phage	36.6	1.4e-16
WP_000978296.1|3050251_3050584_-|tail	phage tail protein	tail	A5LH39	Enterobacteria_phage	61.5	3.3e-35
WP_010989010.1|3050580_3053568_-|tail	phage tail tape measure protein	tail	A0A291AWX1	Escherichia_phage	62.1	8.2e-266
WP_010989009.1|3053647_3053977_-|tail	phage tail assembly protein T	tail	A5LH37	Enterobacteria_phage	50.9	5.0e-23
WP_000478859.1|3053973_3054372_-|tail	phage minor tail protein G	tail	K7PLV8	Enterobacteria_phage	56.8	8.6e-30
WP_000132756.1|3054417_3055167_-|tail	phage tail protein	tail	A0A291AWU6	Escherichia_phage	68.6	3.7e-90
WP_000196702.1|3055178_3055580_-|tail	tail protein	tail	K7PHM6	Enterobacterial_phage	60.9	1.5e-42
WP_000453194.1|3055576_3056143_-|tail	phage tail protein	tail	Q9G063	Phage_Gifsy-2	97.8	9.5e-14
WP_000774239.1|3056123_3056423_-	ATP-binding protein	NA	K7PH43	Enterobacteria_phage	45.1	4.5e-15
WP_001107908.1|3056415_3056739_-	DUF2190 family protein	NA	K7PLV6	Enterobacteria_phage	61.3	7.7e-29
WP_010989008.1|3056829_3058911_-|protease	Clp protease ClpP	protease	A0A291AWT6	Escherichia_phage	69.5	4.8e-265
WP_001009207.1|3058834_3060382_-|portal	phage portal protein	portal	A0A291AWU2	Escherichia_phage	64.3	2.8e-177
WP_000196190.1|3060378_3060585_-	hypothetical protein	NA	A0A1W6JT66	Pseudomonas_phage	53.3	2.9e-05
WP_000989241.1|3060581_3062720_-|terminase	phage terminase large subunit family protein	terminase	A5LH27	Enterobacteria_phage	72.6	3.4e-290
WP_000371784.1|3062676_3063210_-	DUF1441 family protein	NA	A0A291AWV8	Escherichia_phage	48.1	1.0e-33
WP_001541990.1|3063417_3063897_-|lysis	lysis protein	lysis	Q56118	Enterobacteria_phage	77.0	1.4e-55
WP_000984586.1|3063914_3064367_-	lysozyme	NA	A0A0M4R365	Salmonella_phage	97.3	2.3e-79
WP_001574216.1|3064350_3064680_-|holin	phage holin, lambda family	holin	A0A0M3ULK9	Salmonella_phage	100.0	5.8e-56
WP_001141973.1|3064955_3065642_+|protease	type III secretion system effector protease GtgA	protease	Q9MBM0	Phage_Gifsy-2	100.0	2.1e-132
WP_000798705.1|3066002_3066452_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001534733.1|3066587_3066713_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010989004.1|3066886_3067204_-	hypothetical protein	NA	NA	NA	NA	NA
WP_022742653.1|3067270_3068068_-	antitermination protein	NA	A0A0M4S661	Salmonella_phage	99.2	5.2e-151
WP_001617856.1|3068057_3068204_-	YlcG family protein	NA	A0A0M5M7B2	Salmonella_phage	97.9	4.3e-19
WP_001096552.1|3068200_3068812_-	recombination protein NinG	NA	A0A0M4RU10	Salmonella_phage	91.6	6.9e-79
WP_000807548.1|3069705_3069927_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001217665.1|3070038_3070272_-	DinI family protein	NA	H6WRY5	Salmonella_phage	98.7	2.1e-36
WP_014343823.1|3070563_3070854_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000065108.1|3070931_3071243_-	ead/Ea22-like family protein	NA	A0A220NQV2	Salmonella_phage	97.2	7.2e-32
WP_000113629.1|3071239_3071587_-	DUF977 family protein	NA	H6WRX9	Salmonella_phage	89.6	5.4e-52
WP_000800010.1|3071597_3072347_-	ATP-binding protein	NA	S4TNF5	Salmonella_phage	99.6	3.6e-138
WP_000062941.1|3072349_3073333_-	replication protein	NA	H6WRX7	Salmonella_phage	100.0	1.9e-163
WP_001574095.1|3073417_3073792_-	hypothetical protein	NA	S4TTD7	Salmonella_phage	99.2	3.9e-64
WP_000370145.1|3073757_3073997_-	helix-turn-helix domain-containing protein	NA	H6WRX5	Salmonella_phage	47.2	8.3e-12
WP_001038966.1|3074116_3074527_+	helix-turn-helix domain-containing protein	NA	A0A1B5FPF4	Escherichia_phage	42.4	8.1e-07
WP_010989002.1|3074576_3074837_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000917564.1|3074829_3074988_+	hypothetical protein	NA	H6WRX3	Salmonella_phage	98.1	1.2e-22
WP_001668146.1|3075009_3075309_+	hypothetical protein	NA	S4TSN6	Salmonella_phage	84.5	8.1e-49
WP_022742652.1|3075435_3078321_+	PD-(D/E)XK nuclease-like domain-containing protein	NA	H6WRX1	Salmonella_phage	97.3	0.0e+00
WP_001539618.1|3078283_3079441_+	recombinase RecT	NA	S4TTE8	Salmonella_phage	100.0	1.6e-217
WP_001237031.1|3079483_3079723_+	DUF4060 family protein	NA	S4TR31	Salmonella_phage	100.0	2.0e-37
WP_000065276.1|3079763_3080012_+	excisionase family protein	NA	S4TND0	Salmonella_phage	100.0	4.7e-42
WP_001262306.1|3080056_3081349_+	DUF3596 domain-containing protein	NA	S4TSP2	Salmonella_phage	99.8	1.0e-252
WP_000191399.1|3081543_3082746_+	nicotinate phosphoribosyltransferase	NA	NA	NA	NA	NA
WP_000544849.1|3084503_3085718_-	diaminopropionate ammonia-lyase	NA	NA	NA	NA	NA
WP_000762342.1|3086034_3086496_+	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_000117870.1|3086696_3088097_+|tRNA	asparagine--tRNA ligase	tRNA	A0A167RLM0	Powai_lake_megavirus	35.1	4.5e-81
WP_000977713.1|3088703_3089795_+	porin OmpF	NA	Q1MVN1	Enterobacteria_phage	51.7	2.2e-99
WP_000462653.1|3089979_3091170_+	aspartate transaminase	NA	NA	NA	NA	NA
WP_001109471.1|3091231_3091879_-	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
WP_000357052.1|3091906_3092455_-	YcbK family protein	NA	A0A0K1LKR7	Rhodobacter_phage	33.7	1.2e-05
WP_000925872.1|3092714_3094556_-	L,D-transpeptidase	NA	NA	NA	NA	NA
WP_022742649.1|3094900_3099367_-	chromosome partition protein MukB	NA	NA	NA	NA	NA
WP_000060025.1|3099366_3100071_-	chromosome partition protein MukE	NA	NA	NA	NA	NA
WP_001288828.1|3100051_3101374_-	chromosome partition protein MukF	NA	NA	NA	NA	NA
WP_001154025.1|3101366_3102170_-|tRNA	tRNA uridine 5-oxyacetic acid(34) methyltransferase CmoM	tRNA	NA	NA	NA	NA
>prophage 8
NZ_CP014975	Salmonella enterica subsp. enterica serovar Typhimurium str. CDC 2009K-1640 isolate USDA-ARS-USMARC-1906 chromosome, complete genome	4933707	3152233	3160965	4933707	protease,transposase	Enterobacteria_phage(14.29%)	7	NA	NA
WP_085983316.1|3152233_3153488_+|transposase	IS3-like element ISSen1 family transposase	transposase	Q6H9S3	Enterobacteria_phage	33.9	5.4e-17
WP_000502119.1|3153951_3154410_-|transposase	IS200/IS605-like element IS200F family transposase	transposase	A0A1S5RHE3	Helicobacter_phage	33.9	5.1e-10
WP_000934063.1|3154601_3156878_-|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	protease	A0A223W0B1	Agrobacterium_phage	42.3	6.2e-165
WP_000520789.1|3156908_3157229_-|protease	ATP-dependent Clp protease adapter ClpS	protease	A0A1B1IT64	uncultured_Mediterranean_phage	45.7	4.5e-13
WP_000447499.1|3157552_3157774_+	cold shock-like protein CspD	NA	A0A2H4N7Y6	Lake_Baikal_phage	64.2	9.3e-18
WP_000125877.1|3157903_3159850_-	macrolide ABC transporter ATP-binding protein/permease MacB	NA	G9BWD6	Planktothrix_phage	43.1	2.0e-39
WP_001201751.1|3159846_3160965_-	macrolide transporter subunit MacA	NA	A0A140XAI1	Dickeya_phage	38.9	1.4e-08
>prophage 9
NZ_CP014975	Salmonella enterica subsp. enterica serovar Typhimurium str. CDC 2009K-1640 isolate USDA-ARS-USMARC-1906 chromosome, complete genome	4933707	3753903	3798851	4933707	lysis,terminase,integrase,protease,coat,portal,holin	Enterobacteria_phage(77.61%)	68	3745297:3745313	3808066:3808082
3745297:3745313	attL	ACGCGAATTTCAATATC	NA	NA	NA	NA
WP_000915528.1|3753903_3754266_+	GtrA family protein	NA	A0A192Y6N5	Salmonella_phage	100.0	5.0e-61
WP_000703639.1|3754262_3755195_+	glycosyltransferase family 2 protein	NA	A8CG95	Salmonella_phage	100.0	5.5e-176
WP_000671496.1|3755184_3756642_+	glucosyltransferase domain-containing protein	NA	A8CG94	Salmonella_phage	100.0	1.3e-240
WP_000129933.1|3756700_3758704_-	endorhamnosidase	NA	Q76H47	Enterobacteria_phage	100.0	0.0e+00
WP_000532177.1|3758839_3759088_+	Arc family DNA-binding protein	NA	Q76H48	Enterobacteria_phage	100.0	1.8e-38
WP_071533035.1|3759108_3759402_-	hypothetical protein	NA	Q76H12	Enterobacteria_phage	100.0	3.2e-50
WP_001029860.1|3759540_3761517_-	hypothetical protein	NA	Q76H13	Enterobacteria_phage	100.0	0.0e+00
WP_000246977.1|3761516_3762953_-	DNA transfer protein	NA	Q76H14	Enterobacteria_phage	100.0	7.7e-246
WP_000964904.1|3762963_3763653_-	hypothetical protein	NA	A0A2H5BFK5	Salmonella_phage	100.0	2.9e-118
WP_000627593.1|3763655_3764111_-	DUF2824 family protein	NA	Q76H16	Enterobacteria_phage	100.0	1.8e-87
WP_000774917.1|3764110_3764812_-	hypothetical protein	NA	Q76H17	Enterobacteria_phage	100.0	1.7e-76
WP_001122420.1|3764815_3766234_-	packaged DNA stabilization protein gp10	NA	Q76H18	Enterobacteria_phage	100.0	6.4e-277
WP_001166103.1|3766193_3766694_-	packaged DNA stabilization gp4 family protein	NA	Q76H19	Enterobacteria_phage	100.0	4.2e-90
WP_000538670.1|3766677_3767238_-	hypothetical protein	NA	C6ZR11	Salmonella_phage	100.0	9.8e-104
WP_001196937.1|3767278_3768571_-|coat	coat protein	coat	Q76H21	Enterobacteria_phage	100.0	1.1e-243
WP_000433855.1|3768570_3769482_-	scaffold protein	NA	Q76H22	Enterobacteria_phage	100.0	1.5e-162
WP_000774652.1|3769495_3771673_-|portal	portal protein	portal	Q76H23	Enterobacteria_phage	100.0	0.0e+00
WP_000417860.1|3771672_3773172_-|terminase	terminase large subunit	terminase	Q76H24	Enterobacteria_phage	100.0	2.8e-307
WP_000729923.1|3773149_3773638_-	DNA-packaging protein	NA	Q76H25	Enterobacteria_phage	100.0	1.0e-88
WP_001687044.1|3773641_3774046_-	hypothetical protein	NA	Q76H26	Enterobacteria_phage	100.0	1.1e-67
WP_001140562.1|3774045_3774435_-	hypothetical protein	NA	Q76H27	Enterobacteria_phage	100.0	3.9e-75
WP_000808099.1|3774438_3774681_-	DUF2560 family protein	NA	Q76H60	Enterobacteria_phage	100.0	1.7e-33
WP_000877028.1|3774903_3775434_-	KilA-N domain-containing protein	NA	Q76H61	Enterobacteria_phage	100.0	1.3e-94
WP_001687043.1|3775646_3776114_-|lysis	lysis protein	lysis	Q76H63	Enterobacteria_phage	100.0	1.7e-77
WP_024136257.1|3776110_3776608_-	lysozyme	NA	B8K1G9	Salmonella_phage	100.0	4.5e-92
WP_000286100.1|3776585_3776789_-|holin	phage holin family protein	holin	I6R0S9	Salmonella_phage	100.0	1.1e-33
WP_001047566.1|3777219_3777993_-	antitermination protein	NA	Q76H66	Enterobacteria_phage	100.0	8.1e-133
WP_000219133.1|3777989_3778169_-	hypothetical protein	NA	Q76H67	Enterobacteria_phage	100.0	1.9e-24
WP_000149882.1|3778149_3778353_-	phage NinH family protein	NA	I6RSQ6	Salmonella_phage	100.0	7.2e-33
WP_000036320.1|3778349_3778574_-	hypothetical protein	NA	Q76H69	Enterobacteria_phage	100.0	6.3e-38
WP_001108073.1|3778570_3779182_-	recombination protein NinG	NA	Q76H70	Enterobacteria_phage	100.0	7.9e-99
WP_000950963.1|3779174_3779351_-	protein ninF	NA	Q76H71	Enterobacteria_phage	100.0	6.7e-27
WP_001532927.1|3779343_3779685_-	DUF2591 family protein	NA	Q76H72	Enterobacteria_phage	100.0	2.1e-64
WP_000113770.1|3779687_3779864_-	NinE family protein	NA	Q76H73	Enterobacteria_phage	100.0	1.0e-27
WP_000679703.1|3779830_3780004_-	hypothetical protein	NA	Q76H74	Enterobacteria_phage	100.0	2.3e-32
WP_000736891.1|3780000_3780438_-	recombination protein NinB	NA	Q76H49	Enterobacteria_phage	100.0	4.5e-80
WP_001036030.1|3780511_3780781_-	hypothetical protein	NA	Q76H50	Enterobacteria_phage	100.0	4.9e-45
WP_001248410.1|3780777_3782154_-	AAA family ATPase	NA	Q76H51	Enterobacteria_phage	100.0	1.9e-254
WP_000539342.1|3782150_3782972_-	replication protein	NA	Q76H52	Enterobacteria_phage	100.0	5.2e-154
WP_000166961.1|3782958_3783120_-	hypothetical protein	NA	Q76H53	Enterobacteria_phage	100.0	1.3e-21
WP_001103492.1|3783154_3783436_-	hypothetical protein	NA	Q76H54	Enterobacteria_phage	100.0	4.3e-44
WP_000182204.1|3783546_3783762_-	helix-turn-helix domain-containing protein	NA	Q76H55	Enterobacteria_phage	100.0	1.3e-32
WP_000712403.1|3783872_3784562_+	helix-turn-helix transcriptional regulator	NA	Q76H56	Enterobacteria_phage	100.0	1.3e-126
WP_001532928.1|3784726_3785806_+	hypothetical protein	NA	A0A192Y6S0	Salmonella_phage	100.0	1.5e-193
WP_000834175.1|3785844_3786048_-	hypothetical protein	NA	A0A2H5BFH9	Salmonella_phage	100.0	2.0e-27
WP_000216178.1|3786411_3786714_+	hypothetical protein	NA	Q76H58	Enterobacteria_phage	100.0	9.7e-50
WP_001066179.1|3786726_3787314_-	superinfection exclusion B family protein	NA	Q76H59	Enterobacteria_phage	100.0	1.4e-100
WP_000213982.1|3787527_3787722_+	Restriction inhibitor protein ral	NA	Q76H34	Enterobacteria_phage	100.0	1.9e-30
WP_015974224.1|3787805_3788450_+	pentapeptide repeat-containing protein	NA	Q76H35	Enterobacteria_phage	100.0	6.5e-51
WP_000713613.1|3788483_3788771_+	hypothetical protein	NA	Q76H36	Enterobacteria_phage	100.0	2.7e-49
WP_000776963.1|3789046_3789361_+	Superinfection exclusion protein	NA	Q76H37	Enterobacteria_phage	100.0	1.5e-56
WP_000141641.1|3789445_3789604_+|protease	protease FtsH-inhibitory lysogeny factor CIII	protease	Q76H38	Enterobacteria_phage	100.0	2.4e-23
WP_000156731.1|3789584_3789773_+	DUF5444 family protein	NA	I6S647	Salmonella_phage	100.0	3.7e-31
WP_000902092.1|3789762_3789906_+	hypothetical protein	NA	A0A2H5BFM6	Salmonella_phage	100.0	6.4e-20
WP_001046968.1|3789902_3790610_+	recombinase	NA	Q76H40	Enterobacteria_phage	100.0	3.1e-139
WP_001253476.1|3790609_3790894_+	sigma-70 family RNA polymerase sigma factor	NA	Q76H41	Enterobacteria_phage	100.0	1.4e-45
WP_001111291.1|3790940_3791234_+	DUF2856 family protein	NA	Q76H42	Enterobacteria_phage	100.0	1.4e-48
WP_001214777.1|3791244_3791415_+	DUF2737 family protein	NA	Q76H43	Enterobacteria_phage	100.0	1.6e-25
WP_000812203.1|3791411_3791921_+	hypothetical protein	NA	Q76H44	Enterobacteria_phage	100.0	2.8e-89
WP_071533029.1|3791917_3792151_+	Lar family restriction alleviation protein	NA	NA	NA	NA	NA
WP_025617570.1|3792137_3792782_+	ead/Ea22-like family protein	NA	Q76H45	Enterobacteria_phage	99.5	1.4e-122
WP_000371199.1|3792781_3793066_+	DUF4752 family protein	NA	Q76H46	Enterobacteria_phage	100.0	1.6e-49
WP_000002104.1|3793058_3793343_+	ASCH domain-containing protein	NA	Q76H28	Enterobacteria_phage	100.0	1.4e-50
WP_155675089.1|3793411_3793552_+	hypothetical protein	NA	A0A0M4QWX3	Salmonella_phage	97.8	4.2e-16
WP_000051897.1|3793781_3794945_+|integrase	site-specific integrase	integrase	Q76H30	Enterobacteria_phage	100.0	3.7e-230
WP_000893231.1|3795150_3796401_-	glutamate-5-semialdehyde dehydrogenase	NA	A0A1X9I5D4	Streptococcus_phage	47.5	1.6e-98
WP_001285275.1|3796412_3797516_-	glutamate 5-kinase	NA	A0A1X9I5D0	Streptococcus_phage	39.8	6.9e-61
WP_001043675.1|3797798_3798851_+	phosphoporin PhoE	NA	Q1MVN1	Enterobacteria_phage	58.5	1.7e-112
3808066:3808082	attR	ACGCGAATTTCAATATC	NA	NA	NA	NA
>prophage 10
NZ_CP014975	Salmonella enterica subsp. enterica serovar Typhimurium str. CDC 2009K-1640 isolate USDA-ARS-USMARC-1906 chromosome, complete genome	4933707	4552315	4599358	4933707	holin,plate,tRNA,tail	Burkholderia_phage(42.86%)	49	NA	NA
WP_001182237.1|4552315_4553314_-|tRNA	tRNA dihydrouridine(20/20a) synthase DusA	tRNA	NA	NA	NA	NA
WP_001039339.1|4553401_4554712_-	conjugal transfer protein TraF	NA	NA	NA	NA	NA
WP_000416272.1|4554958_4555474_+	zinc uptake transcriptional repressor Zur	NA	NA	NA	NA	NA
WP_001030592.1|4555572_4555782_-	CsbD family protein	NA	NA	NA	NA	NA
WP_010989093.1|4555803_4555917_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001128116.1|4555913_4557239_-	MATE family efflux transporter DinF	NA	NA	NA	NA	NA
WP_000646079.1|4557417_4558026_-	repressor LexA	NA	Q9G0C2	Lactococcus_phage	38.0	1.0e-13
WP_000002902.1|4558134_4558503_-	diacylglycerol kinase	NA	NA	NA	NA	NA
WP_000017360.1|4558673_4561094_+	glycerol-3-phosphate 1-O-acyltransferase PlsB	NA	NA	NA	NA	NA
WP_000455249.1|4561192_4562065_-	4-hydroxybenzoate octaprenyltransferase	NA	NA	NA	NA	NA
WP_000019219.1|4562078_4562576_-	chorismate lyase	NA	NA	NA	NA	NA
WP_000782504.1|4562756_4563674_-	maltose operon protein MalM	NA	NA	NA	NA	NA
WP_000973645.1|4563837_4565196_-	maltoporin	NA	NA	NA	NA	NA
WP_000179176.1|4565284_4566394_-	maltose/maltodextrin ABC transporter ATP-binding protein MalK	NA	Q6GZ03	Mycoplasma_phage	47.2	6.2e-17
WP_000695417.1|4566755_4567946_+	maltose/maltodextrin ABC transporter substrate-binding protein MalE	NA	NA	NA	NA	NA
WP_000382573.1|4568077_4569622_+	maltose ABC transporter permease MalF	NA	NA	NA	NA	NA
WP_001252085.1|4569636_4570527_+	maltose ABC transporter permease MalG	NA	NA	NA	NA	NA
WP_000982749.1|4570692_4571103_-	phosphate-starvation-inducible protein PsiE	NA	NA	NA	NA	NA
WP_022742864.1|4571245_4573342_-	YjbH domain-containing protein	NA	NA	NA	NA	NA
WP_000977979.1|4573341_4574079_-	capsule biosynthesis GfcC family protein	NA	NA	NA	NA	NA
WP_022742863.1|4574075_4574744_-	YjbF family lipoprotein	NA	NA	NA	NA	NA
WP_001541297.1|4574777_4575020_-	outer membrane protein	NA	NA	NA	NA	NA
WP_000790037.1|4575463_4577113_-	glucose-6-phosphate isomerase	NA	NA	NA	NA	NA
WP_000136400.1|4577457_4578807_+	lysine-sensitive aspartokinase 3	NA	NA	NA	NA	NA
WP_000615248.1|4578939_4579287_-	DNA-binding protein	NA	Q6QIE8	Burkholderia_phage	51.5	4.9e-21
WP_001226442.1|4579862_4580150_+|holin	putative holin	holin	Q6QIC8	Burkholderia_phage	49.1	2.3e-16
WP_001270441.1|4580152_4580758_+	lytic transglycosylase domain-containing protein	NA	Q5ZQZ1	Pseudomonas_phage	59.9	2.5e-60
WP_000777266.1|4580770_4581085_+	membrane protein	NA	Q6QIC4	Burkholderia_phage	49.1	6.4e-20
WP_000449433.1|4581244_4581700_+	Gp37 family protein	NA	NA	NA	NA	NA
WP_000875314.1|4581696_4581894_+	hypothetical protein	NA	Q6QIB1	Burkholderia_phage	52.9	8.6e-07
WP_000729852.1|4581883_4583311_+|tail	phage tail sheath family protein	tail	A4JWK5	Burkholderia_virus	70.9	1.1e-194
WP_000907494.1|4583310_4583835_+|tail	phage major tail tube protein	tail	Q6QIA9	Burkholderia_phage	69.5	2.8e-68
WP_001003642.1|4583886_4584204_+|tail	phage tail assembly protein	tail	NA	NA	NA	NA
WP_001185654.1|4584163_4584292_+|tail	GpE family phage tail protein	tail	NA	NA	NA	NA
WP_001262499.1|4584388_4586743_+|tail	phage tail tape measure protein	tail	A4JWL0	Burkholderia_virus	30.6	9.0e-66
WP_001269716.1|4587694_4587904_+|tail	tail protein X	tail	A4JWL2	Burkholderia_virus	60.3	9.8e-17
WP_000818154.1|4587891_4588935_+	phage late control D family protein	NA	Q6QIA2	Burkholderia_phage	45.1	2.5e-76
WP_000679398.1|4588944_4589667_+|plate	phage baseplate assembly protein V	plate	A0A067ZIM2	Vibrio_phage	41.0	3.3e-11
WP_000593182.1|4589994_4590357_+	GtrA family protein	NA	I1TED9	Salmonella_phage	70.8	1.2e-43
WP_000703632.1|4590353_4591283_+	glycosyltransferase family 2 protein	NA	S5FKN0	Shigella_phage	83.8	8.8e-150
WP_001095011.1|4591282_4592830_+	membrane protein	NA	B9UDL6	Salmonella_phage	29.9	1.9e-48
WP_001093501.1|4592993_4593353_+	GPW/gp25 family protein	NA	Q6QIA0	Burkholderia_phage	64.2	2.8e-35
WP_000951736.1|4593343_4594459_+|plate	baseplate J/gp47 family protein	plate	Q6QI99	Burkholderia_phage	52.2	1.8e-101
WP_000359500.1|4594451_4595084_+|tail	phage tail protein I	tail	Q6QI98	Burkholderia_phage	56.4	6.6e-24
WP_000368196.1|4595086_4596832_+|tail	tail fiber protein	tail	A0A0M3ULF6	Salmonella_phage	52.2	3.2e-52
WP_001526208.1|4596836_4597442_+	DUF4376 domain-containing protein	NA	NA	NA	NA	NA
WP_000084331.1|4597438_4597894_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010989092.1|4598142_4598433_+	membrane protein	NA	NA	NA	NA	NA
WP_000587738.1|4598629_4599358_+	hypothetical protein	NA	A0A077SLK3	Escherichia_phage	37.3	5.6e-35
>prophage 1
NZ_CP014976	Salmonella enterica subsp. enterica serovar Typhimurium str. CDC 2009K-1640 isolate USDA-ARS-USMARC-1906 plasmid pSTY1-2009K-1640, complete sequence	94019	40863	50159	94019	transposase	Escherichia_phage(28.57%)	11	NA	NA
WP_001541564.1|40863_41280_+	hypothetical protein	NA	O64348	Escherichia_phage	42.9	8.2e-07
WP_001527010.1|41463_41799_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001541562.1|41855_42422_+	DUF2913 family protein	NA	NA	NA	NA	NA
WP_000728917.1|42453_43395_-|transposase	Rpn family recombination-promoting nuclease/putative transposase	transposase	Q2A0A7	Sodalis_phage	54.3	2.0e-72
WP_000427676.1|43809_45015_+	AAA family ATPase	NA	A0A077SL49	Escherichia_phage	69.3	1.5e-162
WP_000064274.1|45014_45989_+	ParB/RepB/Spo0J family partition protein	NA	A0A1B0V750	Salmonella_phage	53.2	5.1e-84
WP_022743179.1|46070_47345_-	Y-family DNA polymerase	NA	F1C5A5	Cronobacter_phage	64.9	3.9e-156
WP_000925627.1|47344_47767_-	translesion error-prone DNA polymerase V autoproteolytic subunit	NA	A0A1W6JNS2	Morganella_phage	51.6	1.0e-28
WP_000490265.1|48277_48748_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000369839.1|48740_49097_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000088645.1|49478_50159_+	DNA methylase	NA	A0A2I7RE86	Vibrio_phage	36.4	1.6e-28
