assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_001623585.1_ASM162358v1	NZ_CP014664	Salmonella enterica subsp. enterica serovar Anatum str. USDA-ARS-USMARC-1728 chromosome, complete genome	1	808150-808230	1	CRISPRCasFinder	no		cas3,PD-DExK,WYL,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,DEDDh,DinG	Orphan	TTAGCAATTTCTTCGAAATTGAA	23	0	0	NA	NA	NA	1	1	Orphan	cas3,PD-DExK,WYL,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,DEDDh,DinG	NA|251aa|up_1|NZ_CP014664.1_805029_805782_-,NA|102aa|down_0|NZ_CP014664.1_808306_808612_-,NA|102aa|down_1|NZ_CP014664.1_808644_808950_-,NA|75aa|down_8|NZ_CP014664.1_814604_814829_-	NA|585aa|up_9|NZ_CP014664.1_793827_795582_+	cd12820, LbR_YadA-like, YadA-like, left-handed beta-roll	NA|319aa|up_8|NZ_CP014664.1_796310_797267_+	COG4227, COG4227, Antirestriction protein [DNA replication, recombination, and repair]	NA|146aa|up_7|NZ_CP014664.1_797502_797940_+	pfam01797, Y1_Tnp, Transposase IS200 like	NA|204aa|up_6|NZ_CP014664.1_798042_798654_-	COG1853, COG1853, Conserved protein/domain typically associated with flavoprotein oxygenases, DIM6/NTAB family [General function prediction only]	NA|486aa|up_5|NZ_CP014664.1_799067_800525_+	PRK03893, PRK03893, putative sialic acid transporter; Provisional	NA|240aa|up_4|NZ_CP014664.1_800654_801374_+	PRK09980, ompL, porin OmpL	NA|359aa|up_3|NZ_CP014664.1_801419_802496_+	PRK14131, PRK14131, N-acetylneuraminate epimerase	NA|680aa|up_2|NZ_CP014664.1_802661_804701_+	cd15482, Sialidase_non-viral, Non-viral sialidases	NA|251aa|up_1|NZ_CP014664.1_805029_805782_-	NA	NA|579aa|up_0|NZ_CP014664.1_805790_807527_-	TIGR03743, SXT_TraD, conjugative coupling factor TraD, SXT/TOL subfamily	NA|102aa|down_0|NZ_CP014664.1_808306_808612_-	NA	NA|102aa|down_1|NZ_CP014664.1_808644_808950_-	NA	NA|136aa|down_2|NZ_CP014664.1_808976_809384_-	pfam13117, Cag12, Cag pathogenicity island protein Cag12	NA|342aa|down_3|NZ_CP014664.1_809380_810406_-	TIGR02788, conjugal_transfer_protein, P-type DNA transfer ATPase VirB11	NA|423aa|down_4|NZ_CP014664.1_810395_811664_-	cd16429, VirB10, VirB10 forms part of core complex in Type IV secretion system (T4SS)	NA|303aa|down_5|NZ_CP014664.1_811710_812619_-	TIGR02781, Protein_virB9, P-type conjugative transfer protein VirB9	NA|228aa|down_6|NZ_CP014664.1_812615_813299_-	pfam04335, VirB8, VirB8 protein	NA|357aa|down_7|NZ_CP014664.1_813521_814592_-	pfam04610, TrbL, TrbL/VirB6 plasmid conjugal transfer protein	NA|75aa|down_8|NZ_CP014664.1_814604_814829_-	NA	NA|234aa|down_9|NZ_CP014664.1_814840_815542_-	pfam07996, T4SS, Type IV secretion system proteins
GCF_001623585.1_ASM162358v1	NZ_CP014664	Salmonella enterica subsp. enterica serovar Anatum str. USDA-ARS-USMARC-1728 chromosome, complete genome	2	1008528-1010081	1,2,1	PILER-CR,CRISPRCasFinder,CRT	no	cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	cas3,PD-DExK,WYL,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,DEDDh,DinG	Type I-E	GTGTTCCCCGCGCCAGCGGGGATAAACCG,GTGTTCCCCGCGCCAGCGGGGATAAACCG,GTGTTCCCCGCGCCAGCGGGGATAAACCG	29,29,29	0	0	NA	NA	I-E:I-E:I-E	24,25,25	25	TypeI-E	cas3,PD-DExK,WYL,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,DEDDh,DinG	NA,NA	NA|381aa|up_9|NZ_CP014664.1_994328_995471_+	COG1929, COG1929, Glycerate kinase [Carbohydrate transport and metabolism]	NA|919aa|up_8|NZ_CP014664.1_995514_998271_-	PRK11107, PRK11107, hybrid sensory histidine kinase BarA; Provisional	NA|432aa|up_7|NZ_CP014664.1_998328_999624_+	PRK13168, rumA, 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD	NA|745aa|up_6|NZ_CP014664.1_999675_1001910_+	PRK10872, relA, (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional	NA|119aa|up_5|NZ_CP014664.1_1001993_1002350_+	COG3609, COG3609, Predicted transcriptional regulators containing the CopG/Arc/MetJ DNA-binding domain [Transcription]	NA|99aa|up_4|NZ_CP014664.1_1002315_1002612_+	COG3668, ParE, Plasmid stabilization system protein [General function prediction only]	NA|267aa|up_3|NZ_CP014664.1_1003377_1004178_+	PRK09562, mazG, nucleoside triphosphate pyrophosphohydrolase; Reviewed	NA|546aa|up_2|NZ_CP014664.1_1004405_1006043_+	PRK05380, pyrG, CTP synthetase; Validated	NA|433aa|up_1|NZ_CP014664.1_1006125_1007424_+	PRK00077, eno, enolase; Provisional	NA|224aa|up_0|NZ_CP014664.1_1007559_1008231_+	TIGR04322, organic_radical_activating_enzyme, putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE	NA|266aa|down_0|NZ_CP014664.1_1010178_1010976_+	COG1237, COG1237, Metal-dependent hydrolases of the beta-lactamase superfamily II [General function prediction only]	NA|121aa|down_1|NZ_CP014664.1_1011065_1011428_-	cd00470, PTPS, 6-pyruvoyl tetrahydropterin synthase (PTPS)	NA|600aa|down_2|NZ_CP014664.1_1011862_1013662_+	PRK10953, cysJ, NADPH-dependent assimilatory sulfite reductase flavoprotein subunit	NA|571aa|down_3|NZ_CP014664.1_1013661_1015374_+	PRK13504, PRK13504, NADPH-dependent assimilatory sulfite reductase hemoprotein subunit	NA|245aa|down_4|NZ_CP014664.1_1015449_1016184_+	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase	NA|318aa|down_5|NZ_CP014664.1_1016396_1017350_-	PRK15379, PRK15379, type III secretion system effector SopD	cas3|888aa|down_6|NZ_CP014664.1_1017793_1020457_+	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms]	cas8e|519aa|down_7|NZ_CP014664.1_1020468_1022025_+	TIGR02547, CRISPR_system_Cascade_subunit_CasA, CRISPR type I-E/ECOLI-associated protein CasA/Cse1	cse2gr11|187aa|down_8|NZ_CP014664.1_1022021_1022582_+	cd09731, Cse2_I-E, CRISPR/Cas system-associated protein Cse2	cas7|353aa|down_9|NZ_CP014664.1_1022595_1023654_+	TIGR01869, CRISPR_system_Cascade_subunit_CasC, CRISPR-associated protein Cas7/Cse4/CasC, subtype I-E/ECOLI
GCF_001623585.1_ASM162358v1	NZ_CP014664	Salmonella enterica subsp. enterica serovar Anatum str. USDA-ARS-USMARC-1728 chromosome, complete genome	3	1026350-1026500	3	CRISPRCasFinder	no	cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	cas3,PD-DExK,WYL,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,DEDDh,DinG	Type I-E	GTGTTCCCCGCGCTAGCGGGGATAAACCG	29	0	0	NA	NA	I-E	2	2	TypeI-E	cas3,PD-DExK,WYL,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,DEDDh,DinG	NA,NA	NA|245aa|up_9|NZ_CP014664.1_1015449_1016184_+	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase	NA|318aa|up_8|NZ_CP014664.1_1016396_1017350_-	PRK15379, PRK15379, type III secretion system effector SopD	cas3|888aa|up_7|NZ_CP014664.1_1017793_1020457_+	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms]	cas8e|519aa|up_6|NZ_CP014664.1_1020468_1022025_+	TIGR02547, CRISPR_system_Cascade_subunit_CasA, CRISPR type I-E/ECOLI-associated protein CasA/Cse1	cse2gr11|187aa|up_5|NZ_CP014664.1_1022021_1022582_+	cd09731, Cse2_I-E, CRISPR/Cas system-associated protein Cse2	cas7|353aa|up_4|NZ_CP014664.1_1022595_1023654_+	TIGR01869, CRISPR_system_Cascade_subunit_CasC, CRISPR-associated protein Cas7/Cse4/CasC, subtype I-E/ECOLI	cas5|249aa|up_3|NZ_CP014664.1_1023664_1024411_+	cd09645, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5	cas6e|217aa|up_2|NZ_CP014664.1_1024392_1025043_+	TIGR01907, CRISPR_system_Cascade_subunit_CasE, CRISPR-associated protein Cas6/Cse3/CasE, subtype I-E/ECOLI	cas1|307aa|up_1|NZ_CP014664.1_1025039_1025960_+	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI	cas2|98aa|up_0|NZ_CP014664.1_1025959_1026253_+	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional	NA|349aa|down_0|NZ_CP014664.1_1026514_1027561_-	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional	NA|303aa|down_1|NZ_CP014664.1_1027811_1028720_+	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD	NA|480aa|down_2|NZ_CP014664.1_1028729_1030169_+	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional	NA|202aa|down_3|NZ_CP014664.1_1030155_1030761_+	PRK03846, PRK03846, adenylylsulfate kinase; Provisional	NA|108aa|down_4|NZ_CP014664.1_1030811_1031135_+	pfam12084, DUF3561, Protein of unknown function (DUF3561)	NA|104aa|down_5|NZ_CP014664.1_1031325_1031637_+	PRK00888, ftsB, cell division protein FtsB; Reviewed	NA|237aa|down_6|NZ_CP014664.1_1031655_1032366_+	PRK00155, ispD, D-ribitol-5-phosphate cytidylyltransferase	NA|160aa|down_7|NZ_CP014664.1_1032365_1032845_+	PRK00084, ispF, 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Reviewed	NA|350aa|down_8|NZ_CP014664.1_1032841_1033891_+	PRK00984, truD, tRNA pseudouridine synthase D; Reviewed	NA|254aa|down_9|NZ_CP014664.1_1033871_1034633_+	PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional
