assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_001618345.2_ASM161834v2	NZ_CP015074	Escherichia coli strain Ecol_745 chromosome, complete genome	1	2209158-2209281	1	CRISPRCasFinder	no		DEDDh,RT,cas3,csa3,c2c9_V-U4,DinG	Orphan	GCATCCGACAGCCGTTGCCTGATGCGACGCCAG	33	0	0	NA	NA	NA	1	1	Orphan	DEDDh,RT,cas3,csa3,c2c9_V-U4,DinG	NA,NA	NA|407aa|up_9|NZ_CP015074.2_2198489_2199710_+	PRK07967, PRK07967, beta-ketoacyl-ACP synthase I	NA|393aa|up_8|NZ_CP015074.2_2199974_2201153_+	PRK12382, PRK12382, putative transporter; Provisional	NA|332aa|up_7|NZ_CP015074.2_2201149_2202145_-	PRK10715, flk, flagella biosynthesis regulator Flk	NA|379aa|up_6|NZ_CP015074.2_2202243_2203380_+	PRK15438, PRK15438, erythronate-4-phosphate dehydrogenase PdxB; Provisional	NA|338aa|up_5|NZ_CP015074.2_2203445_2204459_+	PRK08040, PRK08040, putative semialdehyde dehydrogenase; Provisional	NA|271aa|up_4|NZ_CP015074.2_2204458_2205271_+	PRK00021, truA, tRNA pseudouridine(38-40) synthase TruA	NA|220aa|up_3|NZ_CP015074.2_2205353_2206013_+	PRK10847, PRK10847, DedA family protein	NA|305aa|up_2|NZ_CP015074.2_2206168_2207083_+	PRK05654, PRK05654, acetyl-CoA carboxylase carboxyltransferase subunit beta	NA|423aa|up_1|NZ_CP015074.2_2207152_2208421_+	PRK10846, PRK10846, bifunctional folylpolyglutamate synthase/ dihydrofolate synthase; Provisional	NA|221aa|up_0|NZ_CP015074.2_2208410_2209073_+	PRK11633, PRK11633, cell division protein DedD; Provisional	NA|163aa|down_0|NZ_CP015074.2_2209513_2210002_+	PRK10845, PRK10845, colicin V production protein; Provisional	NA|506aa|down_1|NZ_CP015074.2_2210038_2211556_+	PRK09246, PRK09246, amidophosphoribosyltransferase; Provisional	NA|190aa|down_2|NZ_CP015074.2_2211650_2212220_+	PRK06029, PRK06029, UbiX family flavin prenyltransferase	NA|261aa|down_3|NZ_CP015074.2_2212485_2213268_+	PRK15010, PRK15010, lysine/arginine/ornithine ABC transporter substrate-binding protein ArgT	NA|261aa|down_4|NZ_CP015074.2_2213488_2214271_+	PRK15437, PRK15437, histidine ABC transporter substrate-binding protein HisJ; Provisional	NA|229aa|down_5|NZ_CP015074.2_2214360_2215047_+	PRK15135, PRK15135, histidine ABC transporter permease HisQ	NA|239aa|down_6|NZ_CP015074.2_2215043_2215760_+	PRK15069, PRK15069, histidine ABC transporter permease HisM	NA|258aa|down_7|NZ_CP015074.2_2215767_2216541_+	PRK10619, PRK10619, histidine ABC transporter ATP-binding protein HisP	NA|298aa|down_8|NZ_CP015074.2_2216699_2217593_-	COG1090, COG1090, Predicted nucleoside-diphosphate sugar epimerase [General function prediction only]	NA|121aa|down_9|NZ_CP015074.2_2217613_2217976_-	PRK11245, folX, dihydroneopterin triphosphate 2'-epimerase
GCF_001618345.2_ASM161834v2	NZ_CP015074	Escherichia coli strain Ecol_745 chromosome, complete genome	2	2975873-2975996	2	CRISPRCasFinder	no	DEDDh	DEDDh,RT,cas3,csa3,c2c9_V-U4,DinG	Unclear	CGACCCCCACCATGTCAAGGTGGTGCTCTAACCAACTGAGCTA	43	0	0	NA	NA	NA	1	1	Orphan	DEDDh,RT,cas3,csa3,c2c9_V-U4,DinG	NA,NA|30aa|down_7|NZ_CP015074.2_2984892_2984982_+	NA|471aa|up_9|NZ_CP015074.2_2965325_2966738_-	PRK09206, PRK09206, pyruvate kinase PykF	NA|70aa|up_8|NZ_CP015074.2_2967294_2967504_+	PRK10292, PRK10292, fumarate hydratase FumD	NA|209aa|up_7|NZ_CP015074.2_2967959_2968586_+	PRK09898, PRK09898, ferredoxin-like protein	NA|701aa|up_6|NZ_CP015074.2_2968606_2970709_+	PRK09849, PRK09849, putative oxidoreductase; Provisional	NA|213aa|up_5|NZ_CP015074.2_2970721_2971360_+	PRK09947, PRK09947, YdhW family putative oxidoreductase system protein	NA|223aa|up_4|NZ_CP015074.2_2971423_2972092_+	TIGR03149, cyt_nit_nrfC, cytochrome c nitrite reductase, Fe-S protein	NA|262aa|up_3|NZ_CP015074.2_2972088_2972874_+	PRK15006, PRK15006, thiosulfate reductase cytochrome B subunit; Provisional	NA|271aa|up_2|NZ_CP015074.2_2972877_2973690_+	PRK09946, PRK09946, hypothetical protein; Provisional	NA|535aa|up_1|NZ_CP015074.2_2973701_2975306_-	PRK09897, PRK09897, FAD-NAD(P)-binding protein	NA|102aa|up_0|NZ_CP015074.2_2975431_2975737_-	PRK11118, PRK11118, putative monooxygenase; Provisional	NA|419aa|down_0|NZ_CP015074.2_2976310_2977567_+	PRK09945, PRK09945, hypothetical protein; Provisional	NA|458aa|down_1|NZ_CP015074.2_2977607_2978981_-	PRK01766, PRK01766, multidrug efflux protein; Reviewed	NA|214aa|down_2|NZ_CP015074.2_2979195_2979837_+	PRK13020, PRK13020, riboflavin synthase subunit alpha; Provisional	NA|383aa|down_3|NZ_CP015074.2_2979876_2981025_-	PRK11705, PRK11705, cyclopropane fatty acyl phospholipid synthase	NA|404aa|down_4|NZ_CP015074.2_2981315_2982527_-	PRK11043, PRK11043, Bcr/CflA family multidrug efflux MFS transporter	NA|311aa|down_5|NZ_CP015074.2_2982639_2983572_+	PRK11074, PRK11074, putative DNA-binding transcriptional regulator; Provisional	NA|342aa|down_6|NZ_CP015074.2_2983568_2984594_-	PRK10703, PRK10703, HTH-type transcriptional repressor PurR	NA|30aa|down_7|NZ_CP015074.2_2984892_2984982_+	NA	NA|390aa|down_8|NZ_CP015074.2_2985147_2986317_+	COG2814, AraJ, Arabinose efflux permease [Carbohydrate transport and metabolism]	NA|194aa|down_9|NZ_CP015074.2_2986462_2987044_-	PRK10543, PRK10543, superoxide dismutase [Fe]
GCF_001618345.2_ASM161834v2	NZ_CP015074	Escherichia coli strain Ecol_745 chromosome, complete genome	3	3512946-3513058	1	PILER-CR	no		DEDDh,RT,cas3,csa3,c2c9_V-U4,DinG	Orphan	TTTTCTTACCTGATTCGGGTAAA	23	0	0	NA	NA	NA	2	2	Orphan	DEDDh,RT,cas3,csa3,c2c9_V-U4,DinG	NA|47aa|up_9|NZ_CP015074.2_3506056_3506197_-,NA|34aa|up_5|NZ_CP015074.2_3507456_3507558_-,NA|50aa|up_3|NZ_CP015074.2_3510883_3511033_-,NA|101aa|up_1|NZ_CP015074.2_3511481_3511784_-,NA|354aa|down_3|NZ_CP015074.2_3515175_3516237_+	NA|47aa|up_9|NZ_CP015074.2_3506056_3506197_-	NA	NA|121aa|up_8|NZ_CP015074.2_3506193_3506556_-	PRK09786, PRK09786, endodeoxyribonuclease RUS; Reviewed	NA|97aa|up_7|NZ_CP015074.2_3506552_3506843_-	pfam07102, DUF1364, Protein of unknown function (DUF1364)	NA|152aa|up_6|NZ_CP015074.2_3507004_3507460_-	PRK09741, PRK09741, hypothetical protein; Provisional	NA|34aa|up_5|NZ_CP015074.2_3507456_3507558_-	NA	NA|348aa|up_4|NZ_CP015074.2_3507907_3508951_+	COG0657, Aes, Esterase/lipase [Lipid metabolism]	NA|50aa|up_3|NZ_CP015074.2_3510883_3511033_-	NA	NA|111aa|up_2|NZ_CP015074.2_3511081_3511414_-	PRK09541, emrE, EmrE family multidrug efflux SMR transporter	NA|101aa|up_1|NZ_CP015074.2_3511481_3511784_-	NA	NA|234aa|up_0|NZ_CP015074.2_3511780_3512482_-	pfam06992, Phage_lambda_P, Replication protein P	NA|180aa|down_0|NZ_CP015074.2_3513494_3514034_-	pfam06254, YdaT_toxin, Putative bacterial toxin ydaT	NA|76aa|down_1|NZ_CP015074.2_3514064_3514292_-	pfam15943, YdaS_antitoxin, Putative antitoxin of bacterial toxin-antitoxin system, YdaS/YdaT	NA|231aa|down_2|NZ_CP015074.2_3514402_3515095_+	COG2932, COG2932, Predicted transcriptional regulator [Transcription]	NA|354aa|down_3|NZ_CP015074.2_3515175_3516237_+	NA	NA|126aa|down_4|NZ_CP015074.2_3516214_3516592_+	COG4933, COG4933, Uncharacterized conserved protein [Function unknown]	NA|69aa|down_5|NZ_CP015074.2_3517067_3517274_+	PRK11354, kil, FtsZ inhibitor protein; Reviewed	NA|99aa|down_6|NZ_CP015074.2_3517349_3517646_+	pfam06064, Gam, Host-nuclease inhibitor protein Gam	NA|262aa|down_7|NZ_CP015074.2_3517651_3518437_+	TIGR01913, Uncharacterized_protein_UU154, phage recombination protein Bet	NA|227aa|down_8|NZ_CP015074.2_3518433_3519114_+	pfam09588, YqaJ, YqaJ-like viral recombinase domain	NA|61aa|down_9|NZ_CP015074.2_3519110_3519293_+	pfam07026, DUF1317, Protein of unknown function (DUF1317)
GCF_001618345.2_ASM161834v2	NZ_CP015074	Escherichia coli strain Ecol_745 chromosome, complete genome	4	3695986-3696077	3	CRISPRCasFinder	no		DEDDh,RT,cas3,csa3,c2c9_V-U4,DinG	Orphan	CCACCTTTTTTACCTGCTTCAGATGC	26	0	0	NA	NA	NA	1	1	Orphan	DEDDh,RT,cas3,csa3,c2c9_V-U4,DinG	NA|70aa|up_9|NZ_CP015074.2_3685236_3685446_-,NA	NA|70aa|up_9|NZ_CP015074.2_3685236_3685446_-	NA	NA|1321aa|up_8|NZ_CP015074.2_3685500_3689463_+	PRK11809, putA, trifunctional transcriptional regulator/proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase; Reviewed	NA|213aa|up_7|NZ_CP015074.2_3689502_3690141_-	PRK15008, PRK15008, HTH-type transcriptional regulator RutR; Provisional	NA|364aa|up_6|NZ_CP015074.2_3690428_3691520_+	TIGR03612, RutA, pyrimidine utilization protein A	NA|231aa|up_5|NZ_CP015074.2_3691519_3692212_+	TIGR03614, RutB, pyrimidine utilization protein B	NA|129aa|up_4|NZ_CP015074.2_3692223_3692610_+	TIGR03610, RutC, pyrimidine utilization protein C	NA|267aa|up_3|NZ_CP015074.2_3692617_3693418_+	TIGR03611, RutD, pyrimidine utilization protein D	NA|197aa|up_2|NZ_CP015074.2_3693427_3694018_+	PRK05365, PRK05365, malonic semialdehyde reductase; Provisional	NA|165aa|up_1|NZ_CP015074.2_3694028_3694523_+	TIGR03615, flavoprotein_oxidoreductase, pyrimidine utilization flavin reductase protein F	NA|443aa|up_0|NZ_CP015074.2_3694543_3695872_+	TIGR03616, Putative_pyrimidine_permease_RutG, pyrimidine utilization transport protein G	NA|199aa|down_0|NZ_CP015074.2_3696500_3697097_+	PRK03767, PRK03767, NAD(P)H:quinone oxidoreductase; Provisional	NA|76aa|down_1|NZ_CP015074.2_3697117_3697345_+	PRK10174, PRK10174, hypothetical protein; Provisional	NA|414aa|down_2|NZ_CP015074.2_3697382_3698624_-	PRK10173, PRK10173, glucose-1-phosphatase/inositol phosphatase; Provisional	NA|307aa|down_3|NZ_CP015074.2_3699158_3700079_+	PRK10266, PRK10266, curved DNA-binding protein	NA|102aa|down_4|NZ_CP015074.2_3700078_3700384_+	PRK10265, PRK10265, chaperone modulator CbpM	NA|200aa|down_5|NZ_CP015074.2_3700638_3701238_-	PRK04976, torD, chaperone protein TorD; Validated	NA|849aa|down_6|NZ_CP015074.2_3701234_3703781_-	PRK15102, PRK15102, trimethylamine-N-oxide reductase TorA	NA|391aa|down_7|NZ_CP015074.2_3703780_3704953_-	PRK15032, PRK15032, pentaheme c-type cytochrome TorC	NA|231aa|down_8|NZ_CP015074.2_3705082_3705775_+	PRK10766, PRK10766, two-component system response regulator TorR	NA|343aa|down_9|NZ_CP015074.2_3705747_3706776_-	PRK10936, PRK10936, TMAO reductase system periplasmic protein TorT; Provisional
GCF_001618345.2_ASM161834v2	NZ_CP015074	Escherichia coli strain Ecol_745 chromosome, complete genome	5	3817734-3817816	4	CRISPRCasFinder	no		DEDDh,RT,cas3,csa3,c2c9_V-U4,DinG	Orphan	ATCTGCCTGTACGGCAGTGAACT	23	0	0	NA	NA	I-F	1	1	Orphan	DEDDh,RT,cas3,csa3,c2c9_V-U4,DinG	NA,NA	NA|431aa|up_9|NZ_CP015074.2_3802731_3804024_-	PRK05431, PRK05431, seryl-tRNA synthetase; Provisional	NA|448aa|up_8|NZ_CP015074.2_3804114_3805458_-	PRK13342, PRK13342, recombination factor protein RarA; Reviewed	NA|204aa|up_7|NZ_CP015074.2_3805468_3806080_-	TIGR00547, Outer-membrane_lipoprotein_carrier_protein, periplasmic chaperone LolA	NA|1369aa|up_6|NZ_CP015074.2_3806238_3810345_-	PRK10263, PRK10263, DNA translocase FtsK; Provisional	NA|165aa|up_5|NZ_CP015074.2_3810479_3810974_-	PRK11169, PRK11169, leucine-responsive transcriptional regulator Lrp	NA|322aa|up_4|NZ_CP015074.2_3811517_3812483_+	PRK10262, PRK10262, thioredoxin reductase; Provisional	NA|589aa|up_3|NZ_CP015074.2_3812605_3814372_+	PRK11174, PRK11174, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed	NA|574aa|up_2|NZ_CP015074.2_3814372_3816094_+	PRK11160, PRK11160, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed	NA|235aa|up_1|NZ_CP015074.2_3816135_3816840_+	PRK00301, aat, leucyl/phenylalanyl-tRNA--protein transferase; Reviewed	NA|73aa|up_0|NZ_CP015074.2_3817124_3817343_+	PRK00276, infA, translation initiation factor IF-1; Validated	NA|759aa|down_0|NZ_CP015074.2_3818027_3820304_-	PRK11034, clpA, ATP-dependent Clp protease ATP-binding subunit; Provisional	NA|107aa|down_1|NZ_CP015074.2_3820334_3820655_-	PRK00033, clpS, ATP-dependent Clp protease adaptor protein ClpS; Reviewed	NA|75aa|down_2|NZ_CP015074.2_3820977_3821202_+	PRK09937, PRK09937, cold shock-like protein CspD	NA|649aa|down_3|NZ_CP015074.2_3821274_3823221_-	PRK10535, PRK10535, macrolide ABC transporter ATP-binding protein/permease MacB	NA|372aa|down_4|NZ_CP015074.2_3823217_3824333_-	PRK11578, PRK11578, macrolide transporter subunit MacA; Provisional	NA|319aa|down_5|NZ_CP015074.2_3824483_3825440_+	COG2990, VirK, Uncharacterized protein conserved in bacteria [Function unknown]	NA|553aa|down_6|NZ_CP015074.2_3825436_3827095_-	COG3593, COG3593, Predicted ATP-dependent endonuclease of the OLD family [DNA replication, recombination, and repair]	NA|232aa|down_7|NZ_CP015074.2_3827519_3828215_+	PRK05420, PRK05420, aquaporin Z; Provisional	NA|300aa|down_8|NZ_CP015074.2_3828629_3829529_+	COG2431, COG2431, Predicted membrane protein [Function unknown]	NA|551aa|down_9|NZ_CP015074.2_3829672_3831325_+	PRK05290, PRK05290, hybrid cluster protein; Provisional
