assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_001617565.1_ASM161756v1	NZ_CP015138	Escherichia coli strain Ecol_732 chromosome, complete genome	1	74693-74775	1	CRISPRCasFinder	no		DinG,DEDDh,cas3,c2c9_V-U4,csa3,RT	Orphan	ATCTGCCTGTACGGCAGTGAACT	23	0	0	NA	NA	I-F	1	1	Orphan	DinG,DEDDh,cas3,c2c9_V-U4,csa3,RT	NA,NA	NA|431aa|up_9|NZ_CP015138.1_59690_60983_-	PRK05431, PRK05431, seryl-tRNA synthetase; Provisional	NA|448aa|up_8|NZ_CP015138.1_61073_62417_-	PRK13342, PRK13342, recombination factor protein RarA; Reviewed	NA|204aa|up_7|NZ_CP015138.1_62427_63039_-	TIGR00547, Outer-membrane_lipoprotein_carrier_protein, periplasmic chaperone LolA	NA|1369aa|up_6|NZ_CP015138.1_63197_67304_-	PRK10263, PRK10263, DNA translocase FtsK; Provisional	NA|165aa|up_5|NZ_CP015138.1_67438_67933_-	PRK11169, PRK11169, leucine-responsive transcriptional regulator Lrp	NA|322aa|up_4|NZ_CP015138.1_68476_69442_+	PRK10262, PRK10262, thioredoxin reductase; Provisional	NA|589aa|up_3|NZ_CP015138.1_69564_71331_+	PRK11174, PRK11174, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed	NA|574aa|up_2|NZ_CP015138.1_71331_73053_+	PRK11160, PRK11160, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed	NA|235aa|up_1|NZ_CP015138.1_73094_73799_+	PRK00301, aat, leucyl/phenylalanyl-tRNA--protein transferase; Reviewed	NA|73aa|up_0|NZ_CP015138.1_74083_74302_+	PRK00276, infA, translation initiation factor IF-1; Validated	NA|759aa|down_0|NZ_CP015138.1_74986_77263_-	PRK11034, clpA, ATP-dependent Clp protease ATP-binding subunit; Provisional	NA|107aa|down_1|NZ_CP015138.1_77293_77614_-	PRK00033, clpS, ATP-dependent Clp protease adaptor protein ClpS; Reviewed	NA|75aa|down_2|NZ_CP015138.1_77936_78161_+	PRK09937, PRK09937, cold shock-like protein CspD	NA|649aa|down_3|NZ_CP015138.1_78233_80180_-	PRK10535, PRK10535, macrolide ABC transporter ATP-binding protein/permease MacB	NA|372aa|down_4|NZ_CP015138.1_80176_81292_-	PRK11578, PRK11578, macrolide transporter subunit MacA; Provisional	NA|319aa|down_5|NZ_CP015138.1_81442_82399_+	COG2990, VirK, Uncharacterized protein conserved in bacteria [Function unknown]	NA|553aa|down_6|NZ_CP015138.1_82395_84054_-	COG3593, COG3593, Predicted ATP-dependent endonuclease of the OLD family [DNA replication, recombination, and repair]	NA|232aa|down_7|NZ_CP015138.1_84478_85174_+	PRK05420, PRK05420, aquaporin Z; Provisional	NA|300aa|down_8|NZ_CP015138.1_85588_86488_+	COG2431, COG2431, Predicted membrane protein [Function unknown]	NA|551aa|down_9|NZ_CP015138.1_86631_88284_+	PRK05290, PRK05290, hybrid cluster protein; Provisional
GCF_001617565.1_ASM161756v1	NZ_CP015138	Escherichia coli strain Ecol_732 chromosome, complete genome	2	960699-960831	1	PILER-CR	no		DinG,DEDDh,cas3,c2c9_V-U4,csa3,RT	Orphan	ATCACCAATATTGAAAA	17	0	0	NA	NA	NA	2	2	Orphan	DinG,DEDDh,cas3,c2c9_V-U4,csa3,RT	NA,NA|73aa|down_7|NZ_CP015138.1_968778_968997_+	NA|95aa|up_9|NZ_CP015138.1_952100_952385_-	pfam01845, CcdB, CcdB protein	NA|78aa|up_8|NZ_CP015138.1_952387_952621_-	COG5302, COG5302, Post-segregation antitoxin (ccd killing mechanism protein) encoded by the F plasmid [General function prediction only]	NA|160aa|up_7|NZ_CP015138.1_952706_953186_-	PRK10769, folA, type 3 dihydrofolate reductase	NA|621aa|up_6|NZ_CP015138.1_953377_955240_-	PRK03562, PRK03562, glutathione-regulated potassium-efflux system protein KefC; Provisional	NA|177aa|up_5|NZ_CP015138.1_955232_955763_-	PRK00871, PRK00871, glutathione-regulated potassium-efflux system oxidoreductase KefF	NA|444aa|up_4|NZ_CP015138.1_955870_957202_-	cd17316, MFS_SV2_like, Metazoan Synaptic vesicle glycoprotein 2 (SV2) and related small molecule transporters of the Major Facilitator Superfamily	NA|96aa|up_3|NZ_CP015138.1_957260_957548_-	PRK15449, PRK15449, ferredoxin-like protein FixX; Provisional	NA|429aa|up_2|NZ_CP015138.1_957544_958831_-	PRK10157, PRK10157, putative oxidoreductase FixC; Provisional	NA|314aa|up_1|NZ_CP015138.1_958881_959823_-	PRK03363, fixB, electron transfer flavoprotein subunit alpha/FixB family protein	NA|257aa|up_0|NZ_CP015138.1_959837_960608_-	PRK03359, PRK03359, putative electron transfer flavoprotein FixA; Reviewed	NA|505aa|down_0|NZ_CP015138.1_961080_962595_+	PRK03356, PRK03356, L-carnitine/gamma-butyrobetaine antiport BCCT transporter	NA|381aa|down_1|NZ_CP015138.1_962625_963768_+	PRK03354, PRK03354, crotonobetainyl-CoA dehydrogenase; Validated	NA|406aa|down_2|NZ_CP015138.1_963896_965114_+	PRK03525, PRK03525, L-carnitine CoA-transferase	NA|518aa|down_3|NZ_CP015138.1_965186_966740_+	PRK08008, caiC, putative crotonobetaine/carnitine-CoA ligase; Validated	NA|262aa|down_4|NZ_CP015138.1_966848_967634_+	PRK03580, PRK03580, crotonobetainyl-CoA hydratase	NA|197aa|down_5|NZ_CP015138.1_967639_968230_+	PRK13627, PRK13627, carnitine operon protein CaiE; Provisional	NA|132aa|down_6|NZ_CP015138.1_968348_968744_-	PRK11476, PRK11476, carnitine metabolism transcriptional regulator CaiF	NA|73aa|down_7|NZ_CP015138.1_968778_968997_+	NA	NA|1074aa|down_8|NZ_CP015138.1_969004_972226_-	PRK05294, carB, carbamoyl-phosphate synthase large subunit	NA|383aa|down_9|NZ_CP015138.1_972243_973392_-	PRK12564, PRK12564, carbamoyl-phosphate synthase small subunit
GCF_001617565.1_ASM161756v1	NZ_CP015138	Escherichia coli strain Ecol_732 chromosome, complete genome	3	4793396-4793509	2	PILER-CR	no		DinG,DEDDh,cas3,c2c9_V-U4,csa3,RT	Orphan	TTTTTTTACCTGATTCGGGTAAA	23	0	0	NA	NA	NA	2	2	Orphan	DinG,DEDDh,cas3,c2c9_V-U4,csa3,RT	NA|47aa|up_8|NZ_CP015138.1_4784784_4784925_-,NA|34aa|up_3|NZ_CP015138.1_4786185_4786287_-,NA|94aa|down_9|NZ_CP015138.1_4798574_4798856_+	NA|230aa|up_9|NZ_CP015138.1_4784098_4784788_-	pfam06323, Phage_antiter_Q, Phage antitermination protein Q	NA|47aa|up_8|NZ_CP015138.1_4784784_4784925_-	NA	NA|121aa|up_7|NZ_CP015138.1_4784921_4785284_-	PRK09786, PRK09786, endodeoxyribonuclease RUS; Reviewed	NA|97aa|up_6|NZ_CP015138.1_4785280_4785571_-	pfam07102, DUF1364, Protein of unknown function (DUF1364)	NA|57aa|up_5|NZ_CP015138.1_4785563_4785734_-	PRK09689, PRK09689, prophage protein NinE; Provisional	NA|152aa|up_4|NZ_CP015138.1_4785733_4786189_-	PRK09741, PRK09741, hypothetical protein; Provisional	NA|34aa|up_3|NZ_CP015138.1_4786185_4786287_-	NA	NA|348aa|up_2|NZ_CP015138.1_4786636_4787680_+	COG0657, Aes, Esterase/lipase [Lipid metabolism]	NA|1422aa|up_1|NZ_CP015138.1_4787716_4791982_-	pfam11924, IAT_beta, Inverse autotransporter, beta-domain	NA|234aa|up_0|NZ_CP015138.1_4792231_4792933_-	pfam06992, Phage_lambda_P, Replication protein P	NA|180aa|down_0|NZ_CP015138.1_4793945_4794485_-	pfam06254, YdaT_toxin, Putative bacterial toxin ydaT	NA|77aa|down_1|NZ_CP015138.1_4794554_4794785_-	pfam15943, YdaS_antitoxin, Putative antitoxin of bacterial toxin-antitoxin system, YdaS/YdaT	NA|252aa|down_2|NZ_CP015138.1_4794823_4795579_+	COG2932, COG2932, Predicted transcriptional regulator [Transcription]	NA|69aa|down_3|NZ_CP015138.1_4796174_4796381_+	PRK11354, kil, FtsZ inhibitor protein; Reviewed	NA|99aa|down_4|NZ_CP015138.1_4796456_4796753_+	pfam06064, Gam, Host-nuclease inhibitor protein Gam	NA|262aa|down_5|NZ_CP015138.1_4796758_4797544_+	TIGR01913, Uncharacterized_protein_UU154, phage recombination protein Bet	NA|227aa|down_6|NZ_CP015138.1_4797540_4798221_+	pfam09588, YqaJ, YqaJ-like viral recombinase domain	NA|61aa|down_7|NZ_CP015138.1_4798217_4798400_+	pfam07026, DUF1317, Protein of unknown function (DUF1317)	NA|64aa|down_8|NZ_CP015138.1_4798372_4798564_+	pfam07131, DUF1382, Protein of unknown function (DUF1382)	NA|94aa|down_9|NZ_CP015138.1_4798574_4798856_+	NA
GCF_001617565.1_ASM161756v1	NZ_CP015138	Escherichia coli strain Ecol_732 chromosome, complete genome	4	4925803-4925894	2	CRISPRCasFinder	no		DinG,DEDDh,cas3,c2c9_V-U4,csa3,RT	Orphan	CCACCTTTTTTACCTGCTTCAGATGC	26	0	0	NA	NA	NA	1	1	Orphan	DinG,DEDDh,cas3,c2c9_V-U4,csa3,RT	NA|70aa|up_9|NZ_CP015138.1_4915053_4915263_-,NA	NA|70aa|up_9|NZ_CP015138.1_4915053_4915263_-	NA	NA|1321aa|up_8|NZ_CP015138.1_4915317_4919280_+	PRK11809, putA, trifunctional transcriptional regulator/proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase; Reviewed	NA|213aa|up_7|NZ_CP015138.1_4919319_4919958_-	PRK15008, PRK15008, HTH-type transcriptional regulator RutR; Provisional	NA|364aa|up_6|NZ_CP015138.1_4920245_4921337_+	TIGR03612, RutA, pyrimidine utilization protein A	NA|231aa|up_5|NZ_CP015138.1_4921336_4922029_+	TIGR03614, RutB, pyrimidine utilization protein B	NA|129aa|up_4|NZ_CP015138.1_4922040_4922427_+	TIGR03610, RutC, pyrimidine utilization protein C	NA|267aa|up_3|NZ_CP015138.1_4922434_4923235_+	TIGR03611, RutD, pyrimidine utilization protein D	NA|197aa|up_2|NZ_CP015138.1_4923244_4923835_+	PRK05365, PRK05365, malonic semialdehyde reductase; Provisional	NA|165aa|up_1|NZ_CP015138.1_4923845_4924340_+	TIGR03615, flavoprotein_oxidoreductase, pyrimidine utilization flavin reductase protein F	NA|443aa|up_0|NZ_CP015138.1_4924360_4925689_+	TIGR03616, Putative_pyrimidine_permease_RutG, pyrimidine utilization transport protein G	NA|199aa|down_0|NZ_CP015138.1_4926317_4926914_+	PRK03767, PRK03767, NAD(P)H:quinone oxidoreductase; Provisional	NA|76aa|down_1|NZ_CP015138.1_4926934_4927162_+	PRK10174, PRK10174, hypothetical protein; Provisional	NA|414aa|down_2|NZ_CP015138.1_4927199_4928441_-	PRK10173, PRK10173, glucose-1-phosphatase/inositol phosphatase; Provisional	NA|307aa|down_3|NZ_CP015138.1_4928975_4929896_+	PRK10266, PRK10266, curved DNA-binding protein	NA|102aa|down_4|NZ_CP015138.1_4929895_4930201_+	PRK10265, PRK10265, chaperone modulator CbpM	NA|200aa|down_5|NZ_CP015138.1_4930455_4931055_-	PRK04976, torD, chaperone protein TorD; Validated	NA|849aa|down_6|NZ_CP015138.1_4931051_4933598_-	PRK15102, PRK15102, trimethylamine-N-oxide reductase TorA	NA|391aa|down_7|NZ_CP015138.1_4933597_4934770_-	PRK15032, PRK15032, pentaheme c-type cytochrome TorC	NA|231aa|down_8|NZ_CP015138.1_4934899_4935592_+	PRK10766, PRK10766, two-component system response regulator TorR	NA|343aa|down_9|NZ_CP015138.1_4935564_4936593_-	PRK10936, PRK10936, TMAO reductase system periplasmic protein TorT; Provisional
GCF_001617565.1_ASM161756v1	NZ_CP015141	Escherichia coli strain Ecol_732 plasmid pEC732_3, complete sequence	1	77358-77449	1	CRISPRCasFinder	no			Orphan	TGAAAAAGTGAAAAAATTTCACTTT	25	0	0	NA	NA	NA	1	1	Orphan	DinG,DEDDh,cas3,c2c9_V-U4,csa3,RT	NA|199aa|up_7|NZ_CP015141.1_72270_72867_+,NA|145aa|up_5|NZ_CP015141.1_74561_74996_+,NA|89aa|up_4|NZ_CP015141.1_75088_75355_+,NA|130aa|up_3|NZ_CP015141.1_75531_75921_+,NA|112aa|down_1|NZ_CP015141.1_78861_79197_-,NA|111aa|down_2|NZ_CP015141.1_79429_79762_+	NA|145aa|up_9|NZ_CP015141.1_71123_71558_+	PRK13701, psiB, conjugation system SOS inhibitor PsiB	NA|240aa|up_8|NZ_CP015141.1_71554_72274_+	PRK13704, PRK13704, plasmid SOS inhibition protein A; Provisional	NA|199aa|up_7|NZ_CP015141.1_72270_72867_+	NA	NA|167aa|up_6|NZ_CP015141.1_73328_73829_+	COG4734, ArdA, Antirestriction protein [General function prediction only]	NA|145aa|up_5|NZ_CP015141.1_74561_74996_+	NA	NA|89aa|up_4|NZ_CP015141.1_75088_75355_+	NA	NA|130aa|up_3|NZ_CP015141.1_75531_75921_+	NA	NA|305aa|up_2|NZ_CP015141.1_75917_76832_+	PRK09956, PRK09956, ISNCY family transposase	NA|70aa|up_1|NZ_CP015141.1_76855_77065_+	TIGR01784, Uncharacterized_protein_pSLT051, conserved hypothetical protein (putative transposase or invertase)	NA|84aa|up_0|NZ_CP015141.1_77095_77347_-	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins	NA|283aa|down_0|NZ_CP015141.1_77927_78776_+	pfam13708, DUF4942, Domain of unknown function (DUF4942)	NA|112aa|down_1|NZ_CP015141.1_78861_79197_-	NA	NA|111aa|down_2|NZ_CP015141.1_79429_79762_+	NA	NA|904aa|down_3|NZ_CP015141.1_79773_82485_+	pfam03432, Relaxase, Relaxase/Mobilisation nuclease domain	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA
