assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_001611385.1_ASM161138v1	NZ_CP012974	Staphylococcus aureus strain ST20130943 chromosome, complete genome	1	138418-138502	1	CRISPRCasFinder	no		DinG,cas3,DEDDh,csa3,RT,WYL	Orphan	TTCTACAGGCAATGCAAGTTGGGGTG	26	1	4	138444-138476|138444-138476|138444-138476|138444-138476	NZ_CP012974.1_1026264-1026232|NZ_CP012974.1_1304328-1304360|NZ_CP012974.1_831534-831502|NZ_CP012974.1_999835-999803	NA	1	1	Orphan	DinG,cas3,DEDDh,csa3,RT,WYL	NA|402aa|up_9|NZ_CP012974.1_127563_128769_+,NA|68aa|down_0|NZ_CP012974.1_138563_138767_-	NA|402aa|up_9|NZ_CP012974.1_127563_128769_+	NA	NA|402aa|up_8|NZ_CP012974.1_128769_129975_+	cd03794, GT4_WbuB-like, Escherichia coli WbuB and similar proteins	NA|186aa|up_7|NZ_CP012974.1_129985_130543_+	COG2148, WcaJ, Sugar transferases involved in lipopolysaccharide synthesis [Cell envelope biogenesis, outer membrane]	NA|296aa|up_6|NZ_CP012974.1_130542_131430_+	cd05232, UDP_G4E_4_SDR_e, UDP-glucose 4 epimerase, subgroup 4, extended (e) SDRs	NA|421aa|up_5|NZ_CP012974.1_131483_132746_+	COG0677, WecC, UDP-N-acetyl-D-mannosaminuronate dehydrogenase [Cell envelope biogenesis, outer membrane]	NA|382aa|up_4|NZ_CP012974.1_132822_133968_+	COG0381, WecB, UDP-N-acetylglucosamine 2-epimerase [Cell envelope biogenesis, outer membrane]	NA|109aa|up_3|NZ_CP012974.1_134032_134359_-	PRK13313, PRK13313, staphylobilin-forming heme oxygenase IsdI	NA|128aa|up_2|NZ_CP012974.1_134365_134749_-	pfam04304, DUF454, Protein of unknown function (DUF454)	NA|496aa|up_1|NZ_CP012974.1_135175_136663_+	cd07117, ALDH_StaphAldA1, Uncharacterized Staphylococcus aureus AldA1 (SACOL0154) aldehyde dehydrogenase-like	NA|320aa|up_0|NZ_CP012974.1_137309_138269_+	COG1230, CzcD, Co/Zn/Cd efflux system component [Inorganic ion transport and metabolism]	NA|68aa|down_0|NZ_CP012974.1_138563_138767_-	NA	NA|171aa|down_1|NZ_CP012974.1_138945_139458_+	pfam14026, DUF4242, Protein of unknown function (DUF4242)	NA|247aa|down_2|NZ_CP012974.1_139799_140540_+	COG1116, TauB, ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]	NA|325aa|down_3|NZ_CP012974.1_140553_141528_+	cd13553, PBP2_NrtA_CpmA_like, Substrate binding domain of ABC-type nitrate/bicarbonate transporters, a member of the type 2 periplasmic binding fold superfamily	NA|254aa|down_4|NZ_CP012974.1_141524_142286_+	COG0600, TauC, ABC-type nitrate/sulfonate/bicarbonate transport system, permease component [Inorganic ion transport and metabolism]	NA|344aa|down_5|NZ_CP012974.1_142298_143330_+	COG1960, CaiA, Acyl-CoA dehydrogenases [Lipid metabolism]	NA|120aa|down_6|NZ_CP012974.1_143546_143906_+	COG5609, COG5609, Uncharacterized conserved protein [Function unknown]	NA|342aa|down_7|NZ_CP012974.1_144078_145104_+	PRK07574, PRK07574, NAD-dependent formate dehydrogenase	NA|417aa|down_8|NZ_CP012974.1_145489_146740_+	cd17329, MFS_MdtH_MDR_like, Multidrug resistance protein MdtH and similar multidrug resistance (MDR) transporters of the Major Facilitator Superfamily	NA|2392aa|down_9|NZ_CP012974.1_147186_154362_+	PRK12467, PRK12467, peptide synthase; Provisional
GCF_001611385.1_ASM161138v1	NZ_CP012974	Staphylococcus aureus strain ST20130943 chromosome, complete genome	2	627719-627811	2	CRISPRCasFinder	no		DinG,cas3,DEDDh,csa3,RT,WYL	Orphan	CTAAAGGTGAAGAGGAACGCAGTTGGATGCTA	32	0	0	NA	NA	NA	1	1	Orphan	DinG,cas3,DEDDh,csa3,RT,WYL	NA|36aa|up_3|NZ_CP012974.1_624390_624498_+,NA|169aa|down_4|NZ_CP012974.1_631558_632065_+,NA|239aa|down_5|NZ_CP012974.1_632226_632943_+	NA|313aa|up_9|NZ_CP012974.1_618594_619533_+	cd19083, AKR_AKR11A1_11D1, AKR11A and  AKR11D families of aldo-keto reductase (AKR)	NA|179aa|up_8|NZ_CP012974.1_619741_620278_+	COG0655, WrbA, Multimeric flavodoxin WrbA [General function prediction only]	NA|159aa|up_7|NZ_CP012974.1_620446_620923_+	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family	NA|432aa|up_6|NZ_CP012974.1_620962_622258_+	COG1078, COG1078, HD superfamily phosphohydrolases [General function prediction only]	NA|174aa|up_5|NZ_CP012974.1_622285_622807_+	pfam08741, YwhD, YwhD family	NA|337aa|up_4|NZ_CP012974.1_623305_624316_+	PRK09422, PRK09422, ethanol-active dehydrogenase/acetaldehyde-active reductase; Provisional	NA|36aa|up_3|NZ_CP012974.1_624390_624498_+	NA	NA|139aa|up_2|NZ_CP012974.1_624590_625007_+	COG4506, COG4506, Uncharacterized protein conserved in bacteria [Function unknown]	NA|554aa|up_1|NZ_CP012974.1_625003_626665_+	PRK01611, argS, arginyl-tRNA synthetase; Reviewed	NA|212aa|up_0|NZ_CP012974.1_626931_627567_+	COG2231, COG2231, Uncharacterized protein related to Endonuclease III [DNA replication, recombination, and repair]	NA|296aa|down_0|NZ_CP012974.1_627879_628767_+	cd01143, YvrC, Periplasmic binding protein YvrC	NA|317aa|down_1|NZ_CP012974.1_628914_629865_+	pfam01032, FecCD, FecCD transport family	NA|240aa|down_2|NZ_CP012974.1_629919_630639_+	COG1011, COG1011, Predicted hydrolase (HAD superfamily) [General function prediction only]	NA|267aa|down_3|NZ_CP012974.1_630622_631423_+	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]	NA|169aa|down_4|NZ_CP012974.1_631558_632065_+	NA	NA|239aa|down_5|NZ_CP012974.1_632226_632943_+	NA	NA|263aa|down_6|NZ_CP012974.1_633111_633900_+	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]	NA|125aa|down_7|NZ_CP012974.1_634149_634524_-	TIGR01889, Pleiotropic_Regulator_Of_Virulence, staphylococcal accessory regulator family	NA|310aa|down_8|NZ_CP012974.1_635471_636401_-	COG3238, COG3238, Uncharacterized protein conserved in bacteria [Function unknown]	NA|75aa|down_9|NZ_CP012974.1_636595_636820_-	pfam11148, DUF2922, Protein of unknown function (DUF2922)
GCF_001611385.1_ASM161138v1	NZ_CP012974	Staphylococcus aureus strain ST20130943 chromosome, complete genome	3	831807-831891	3	CRISPRCasFinder	no		DinG,cas3,DEDDh,csa3,RT,WYL	Orphan	CCAACTTGCACATTATTGTAAGCTGACTT	29	1	7	831836-831862|831836-831862|831836-831862|831836-831862|831836-831862|831836-831862|831836-831862	NZ_CP012974.1_796648-796674|NZ_CP012974.1_880658-880632|NZ_CP012974.1_1100637-1100611|NZ_CP012974.1_1607739-1607765|NZ_CP012974.1_2259766-2259792|NZ_CP012974.1_880602-880576|NZ_CP012974.1_2259822-2259848	NA	1	1	Orphan	DinG,cas3,DEDDh,csa3,RT,WYL	NA,NA	NA|194aa|up_9|NZ_CP012974.1_824582_825164_+	COG0406, phoE, Broad specificity phosphatase PhoE and related phosphatases [General function prediction only]	NA|206aa|up_8|NZ_CP012974.1_825236_825854_-	COG1279, COG1279, Lysine efflux permease [General function prediction only]	NA|165aa|up_7|NZ_CP012974.1_826008_826503_-	pfam13420, Acetyltransf_4, Acetyltransferase (GNAT) domain	NA|141aa|up_6|NZ_CP012974.1_826900_827323_-	TIGR03561, organ_hyd_perox, peroxiredoxin, Ohr subfamily	NA|239aa|up_5|NZ_CP012974.1_827470_828187_+	PRK13575, PRK13575, type I 3-dehydroquinate dehydratase	NA|180aa|up_4|NZ_CP012974.1_828269_828809_+	cd02135, YdjA-like, nitroreductase family protein similar to Escherichia coli YdjA	NA|107aa|up_3|NZ_CP012974.1_828958_829279_-	cd02947, TRX_family, TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains	NA|119aa|up_2|NZ_CP012974.1_829422_829779_+	cd03036, ArsC_like, Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC	NA|127aa|up_1|NZ_CP012974.1_829936_830317_+	PRK01202, PRK01202, glycine cleavage system protein GcvH	NA|293aa|up_0|NZ_CP012974.1_830495_831374_+	COG3878, COG3878, Uncharacterized protein conserved in bacteria [Function unknown]	NA|129aa|down_0|NZ_CP012974.1_832171_832558_+	COG1658, COG1658, Small primase-like proteins (Toprim domain) [DNA replication, recombination, and repair]	NA|99aa|down_1|NZ_CP012974.1_832550_832847_+	cd02947, TRX_family, TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains	NA|342aa|down_2|NZ_CP012974.1_833096_834122_+	COG1135, AbcC, ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]	NA|232aa|down_3|NZ_CP012974.1_834114_834810_+	COG2011, AbcD, ABC-type metal ion transport system, permease component [Inorganic ion transport and metabolism]	NA|274aa|down_4|NZ_CP012974.1_834827_835649_+	COG1464, NlpA, ABC-type metal ion transport system, periplasmic component/surface antigen [Inorganic ion transport and metabolism]	NA|65aa|down_5|NZ_CP012974.1_836002_836197_+	COG3237, COG3237, Uncharacterized protein conserved in bacteria [Function unknown]	NA|284aa|down_6|NZ_CP012974.1_836429_837281_-	COG2035, COG2035, Predicted membrane protein [Function unknown]	NA|254aa|down_7|NZ_CP012974.1_837608_838370_+	COG0396, sufC, Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]	NA|436aa|down_8|NZ_CP012974.1_838467_839775_+	COG0719, SufB, Cysteine desulfurase activator SufB [Posttranslational modification, protein turnover, chaperones]	NA|417aa|down_9|NZ_CP012974.1_839880_841131_+	TIGR01979, Probable_cysteine_desulfurase, cysteine desulfurases, SufSfamily
GCF_001611385.1_ASM161138v1	NZ_CP012974	Staphylococcus aureus strain ST20130943 chromosome, complete genome	4	1100545-1100626	4	CRISPRCasFinder	no		DinG,cas3,DEDDh,csa3,RT,WYL	Orphan	TGCAAGTTGGCGGGGCCCCAACATAG	26	0	0	NA	NA	NA	1	1	Orphan	DinG,cas3,DEDDh,csa3,RT,WYL	NA|169aa|up_7|NZ_CP012974.1_1094501_1095008_+,NA|62aa|up_4|NZ_CP012974.1_1096807_1096993_-,NA|78aa|up_3|NZ_CP012974.1_1097614_1097848_-,NA|49aa|up_1|NZ_CP012974.1_1099956_1100103_+,NA|75aa|up_0|NZ_CP012974.1_1100059_1100284_+,NA|76aa|down_6|NZ_CP012974.1_1107639_1107867_+	NA|110aa|up_9|NZ_CP012974.1_1092731_1093061_+	pfam12199, efb-c, Extracellular fibrinogen binding protein C terminal	NA|134aa|up_8|NZ_CP012974.1_1093429_1093831_-	PRK13033, PRK13033, formyl peptide receptor-like 1 inhibitory protein; Reviewed	NA|169aa|up_7|NZ_CP012974.1_1094501_1095008_+	NA	NA|166aa|up_6|NZ_CP012974.1_1095266_1095764_+	pfam12199, efb-c, Extracellular fibrinogen binding protein C terminal	NA|117aa|up_5|NZ_CP012974.1_1095917_1096268_+	pfam11546, CompInhib_SCIN, Staphylococcal complement inhibitor SCIN	NA|62aa|up_4|NZ_CP012974.1_1096807_1096993_-	NA	NA|78aa|up_3|NZ_CP012974.1_1097614_1097848_-	NA	NA|320aa|up_2|NZ_CP012974.1_1098324_1099284_-	TIGR01002, synergohymenotropic_toxin, beta-channel forming cytolysin	NA|49aa|up_1|NZ_CP012974.1_1099956_1100103_+	NA	NA|75aa|up_0|NZ_CP012974.1_1100059_1100284_+	NA	NA|239aa|down_0|NZ_CP012974.1_1100841_1101558_-	PRK13350, PRK13350, superantigen-like protein; Reviewed	NA|242aa|down_1|NZ_CP012974.1_1101665_1102391_-	PRK13349, PRK13349, superantigen-like protein; Reviewed	NA|242aa|down_2|NZ_CP012974.1_1102485_1103211_-	PRK13043, PRK13043, superantigen-like protein; Reviewed	NA|334aa|down_3|NZ_CP012974.1_1103648_1104650_+	PRK04284, PRK04284, ornithine carbamoyltransferase; Provisional	NA|311aa|down_4|NZ_CP012974.1_1104672_1105605_+	PRK12353, PRK12353, putative amino acid kinase; Reviewed	NA|519aa|down_5|NZ_CP012974.1_1105776_1107333_+	COG1288, COG1288, Predicted membrane protein [Function unknown]	NA|76aa|down_6|NZ_CP012974.1_1107639_1107867_+	NA	NA|316aa|down_7|NZ_CP012974.1_1108171_1109119_-	cd09325, TDT_C4-dicarb_trans, C4-dicarboxylate transporters of the Tellurite-resistance/Dicarboxylate Transporter (TDT) family	NA|63aa|down_8|NZ_CP012974.1_1109367_1109556_+	COG2826, Tra8, Transposase and inactivated derivatives, IS30 family [DNA replication, recombination, and repair]	NA|45aa|down_9|NZ_CP012974.1_1110460_1110595_+	pfam05480, Staph_haemo, Staphylococcus haemolytic protein
GCF_001611385.1_ASM161138v1	NZ_CP012974	Staphylococcus aureus strain ST20130943 chromosome, complete genome	5	1607595-1607676	5	CRISPRCasFinder	no		DinG,cas3,DEDDh,csa3,RT,WYL	Orphan	CCCCAACTTCCATTGCCTGTAGAA	24	0	0	NA	NA	NA	1	1	Orphan	DinG,cas3,DEDDh,csa3,RT,WYL	NA,NA|49aa|down_3|NZ_CP012974.1_1611720_1611867_-,NA|43aa|down_8|NZ_CP012974.1_1614903_1615032_-	NA|208aa|up_9|NZ_CP012974.1_1596372_1596996_-	PRK05480, PRK05480, uridine/cytidine kinase; Provisional	NA|423aa|up_8|NZ_CP012974.1_1596995_1598264_-	COG0826, COG0826, Collagenase and related proteases [Posttranslational modification, protein turnover, chaperones]	NA|308aa|up_7|NZ_CP012974.1_1598275_1599199_-	COG0826, COG0826, Collagenase and related proteases [Posttranslational modification, protein turnover, chaperones]	NA|213aa|up_6|NZ_CP012974.1_1599201_1599840_-	COG4122, COG4122, Predicted O-methyltransferase [General function prediction only]	NA|103aa|up_5|NZ_CP012974.1_1600124_1600433_-	PRK13678, PRK13678, hypothetical protein; Provisional	NA|143aa|up_4|NZ_CP012974.1_1600447_1600876_-	COG0816, COG0816, Predicted endonuclease involved in recombination (possible Holliday junction resolvase in Mycoplasmas and B	NA|87aa|up_3|NZ_CP012974.1_1600879_1601140_-	PRK05473, IreB-like, IreB family regulatory phosphoprotein	NA|877aa|up_2|NZ_CP012974.1_1601202_1603833_-	PRK00252, alaS, alanyl-tRNA synthetase; Reviewed	NA|826aa|up_1|NZ_CP012974.1_1604175_1606653_-	TIGR01448, recD_rel, helicase, putative, RecD/TraA family	NA|223aa|up_0|NZ_CP012974.1_1606654_1607323_-	sd00006, TPR, Tetratricopeptide repeat	NA|373aa|down_0|NZ_CP012974.1_1607898_1609017_-	PRK00143, mnmA, tRNA-specific 2-thiouridylase MnmA; Reviewed	NA|381aa|down_1|NZ_CP012974.1_1609017_1610160_-	COG1104, NifS, Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes [Amino acid transport and metabolism]	NA|338aa|down_2|NZ_CP012974.1_1610471_1611485_+	TIGR03558, oxido_grp_1, luciferase family oxidoreductase, group 1	NA|49aa|down_3|NZ_CP012974.1_1611720_1611867_-	NA	NA|61aa|down_4|NZ_CP012974.1_1611906_1612089_-	COG3237, COG3237, Uncharacterized protein conserved in bacteria [Function unknown]	NA|141aa|down_5|NZ_CP012974.1_1612188_1612611_-	COG1959, COG1959, Predicted transcriptional regulator [Transcription]	NA|425aa|down_6|NZ_CP012974.1_1612695_1613970_+	PRK13342, PRK13342, recombination factor protein RarA; Reviewed	NA|258aa|down_7|NZ_CP012974.1_1614130_1614904_-	COG1179, COG1179, Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 1 [Coenzyme metabolism]	NA|43aa|down_8|NZ_CP012974.1_1614903_1615032_-	NA	NA|589aa|down_9|NZ_CP012974.1_1615364_1617131_-	PRK00476, aspS, aspartyl-tRNA synthetase; Validated
GCF_001611385.1_ASM161138v1	NZ_CP012974	Staphylococcus aureus strain ST20130943 chromosome, complete genome	6	1693679-1693764	6	CRISPRCasFinder	no		DinG,cas3,DEDDh,csa3,RT,WYL	Orphan	TTCTACAGACCATGCAAGTTGGGGTGGG	28	0	0	NA	NA	NA	1	1	Orphan	DinG,cas3,DEDDh,csa3,RT,WYL	NA,NA|38aa|down_4|NZ_CP012974.1_1698086_1698200_-	NA|423aa|up_9|NZ_CP012974.1_1678068_1679337_-	PRK07006, PRK07006, isocitrate dehydrogenase; Reviewed	NA|374aa|up_8|NZ_CP012974.1_1679385_1680507_-	PRK14035, PRK14035, citrate synthase; Provisional	NA|454aa|up_7|NZ_CP012974.1_1680854_1682216_+	COG1113, AnsP, Gamma-aminobutyrate permease and related permeases [Amino acid transport and metabolism]	NA|586aa|up_6|NZ_CP012974.1_1682563_1684321_-	PRK06354, PRK06354, pyruvate kinase; Provisional	NA|323aa|up_5|NZ_CP012974.1_1684342_1685311_-	PRK03202, PRK03202, ATP-dependent 6-phosphofructokinase	NA|315aa|up_4|NZ_CP012974.1_1685579_1686524_-	PRK05724, PRK05724, acetyl-CoA carboxylase carboxyltransferase subunit alpha; Validated	NA|286aa|up_3|NZ_CP012974.1_1686523_1687381_-	PRK05654, PRK05654, acetyl-CoA carboxylase carboxyltransferase subunit beta	NA|410aa|up_2|NZ_CP012974.1_1687575_1688805_-	PRK07232, PRK07232, bifunctional malic enzyme oxidoreductase/phosphotransacetylase; Reviewed	NA|1066aa|up_1|NZ_CP012974.1_1689254_1692452_-	COG0587, DnaE, DNA polymerase III, alpha subunit [DNA replication, recombination, and repair]	NA|314aa|up_0|NZ_CP012974.1_1692472_1693414_-	COG0618, COG0618, Exopolyphosphatase-related proteins [General function prediction only]	NA|433aa|down_0|NZ_CP012974.1_1693867_1695166_-	COG4109, COG4109, Predicted transcriptional regulator containing CBS domains [Transcription]	NA|138aa|down_1|NZ_CP012974.1_1695370_1695784_+	pfam00582, Usp, Universal stress protein family	NA|230aa|down_2|NZ_CP012974.1_1696088_1696778_-	PRK00685, PRK00685, metal-dependent hydrolase; Provisional	NA|352aa|down_3|NZ_CP012974.1_1696952_1698008_+	COG0006, PepP, Xaa-Pro aminopeptidase [Amino acid transport and metabolism]	NA|38aa|down_4|NZ_CP012974.1_1698086_1698200_-	NA	NA|373aa|down_5|NZ_CP012974.1_1698323_1699442_-	cd05305, L-AlaDH, Alanine dehydrogenase NAD-binding and catalytic domains	NA|167aa|down_6|NZ_CP012974.1_1699582_1700083_+	pfam00582, Usp, Universal stress protein family	NA|401aa|down_7|NZ_CP012974.1_1700328_1701531_-	PRK00180, PRK00180, acetate kinase A/propionate kinase 2; Reviewed	NA|316aa|down_8|NZ_CP012974.1_1701618_1702566_-	COG0827, COG0827, Adenine-specific DNA methylase [DNA replication, recombination, and repair]	NA|165aa|down_9|NZ_CP012974.1_1702688_1703183_-	PRK00522, tpx, thiol peroxidase
GCF_001611385.1_ASM161138v1	NZ_CP012974	Staphylococcus aureus strain ST20130943 chromosome, complete genome	7	2136993-2137082	7	CRISPRCasFinder	no	csa3	DinG,cas3,DEDDh,csa3,RT,WYL	Type I-A	CAACTTTAGTTGTTAGGGGCTCTT	24	0	0	NA	NA	NA	1	1	Orphan	DinG,cas3,DEDDh,csa3,RT,WYL	NA|77aa|up_5|NZ_CP012974.1_2131864_2132095_-,NA|364aa|up_0|NZ_CP012974.1_2135884_2136976_+,NA|35aa|down_0|NZ_CP012974.1_2137417_2137522_-,NA|53aa|down_1|NZ_CP012974.1_2138201_2138360_+	NA|237aa|up_9|NZ_CP012974.1_2127475_2128186_+	PRK05819, deoD, DeoD-type purine-nucleoside phosphorylase	NA|148aa|up_8|NZ_CP012974.1_2128306_2128750_-	COG0783, Dps, DNA-binding ferritin-like protein (oxidative damage protectant) [Inorganic ion transport and metabolism]	NA|138aa|up_7|NZ_CP012974.1_2128949_2129363_-	COG3011, COG3011, Predicted thiol-disulfide oxidoreductase [General function    prediction only]	NA|458aa|up_6|NZ_CP012974.1_2129819_2131193_-	pfam01878, EVE, EVE domain	NA|77aa|up_5|NZ_CP012974.1_2131864_2132095_-	NA	NA|313aa|up_4|NZ_CP012974.1_2132125_2133064_-	COG1482, ManA, Phosphomannose isomerase [Carbohydrate transport and metabolism]	NA|222aa|up_3|NZ_CP012974.1_2133499_2134165_-	cd05243, SDR_a5, atypical (a) SDRs, subgroup 5	csa3|107aa|up_2|NZ_CP012974.1_2134316_2134637_+	cd00090, HTH_ARSR, Arsenical Resistance Operon Repressor and similar prokaryotic, metal regulated homodimeric repressors	NA|327aa|up_1|NZ_CP012974.1_2134638_2135619_+	COG1230, CzcD, Co/Zn/Cd efflux system component [Inorganic ion transport and metabolism]	NA|364aa|up_0|NZ_CP012974.1_2135884_2136976_+	NA	NA|35aa|down_0|NZ_CP012974.1_2137417_2137522_-	NA	NA|53aa|down_1|NZ_CP012974.1_2138201_2138360_+	NA	NA|286aa|down_2|NZ_CP012974.1_2139017_2139875_-	COG0561, Cof, Predicted hydrolases of the HAD superfamily [General function prediction only]	NA|261aa|down_3|NZ_CP012974.1_2139942_2140725_-	COG1119, ModF, ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]	NA|602aa|down_4|NZ_CP012974.1_2140956_2142762_-	PRK00331, PRK00331, isomerizing glutamine--fructose-6-phosphate transaminase	NA|513aa|down_5|NZ_CP012974.1_2143442_2144981_+	COG2213, MtlA, Phosphotransferase system, mannitol-specific IIBC component [Carbohydrate transport and metabolism]	NA|711aa|down_6|NZ_CP012974.1_2145015_2147148_+	COG3711, BglG, Transcriptional antiterminator [Transcription]	NA|145aa|down_7|NZ_CP012974.1_2147159_2147594_+	COG4668, MtlA, Mannitol/fructose-specific phosphotransferase system, IIA domain [Carbohydrate transport and metabolism]	NA|369aa|down_8|NZ_CP012974.1_2147593_2148700_+	PRK02318, PRK02318, mannitol-1-phosphate 5-dehydrogenase; Provisional	NA|2503aa|down_9|NZ_CP012974.1_2149018_2156527_-	TIGR04263, cell_wall_surface_anchor_family_protein, SasC/Mrp/FmtB intercellular aggregation domain
GCF_001611385.1_ASM161138v1	NZ_CP012974	Staphylococcus aureus strain ST20130943 chromosome, complete genome	8	2149323-2149408	8	CRISPRCasFinder	no	csa3	DinG,cas3,DEDDh,csa3,RT,WYL	Type I-A	CCAACTGATTTTTGCGTATCATTAGT	26	0	0	NA	NA	NA	1	1	Orphan	DinG,cas3,DEDDh,csa3,RT,WYL	NA|364aa|up_9|NZ_CP012974.1_2135884_2136976_+,NA|35aa|up_8|NZ_CP012974.1_2137417_2137522_-,NA|53aa|up_7|NZ_CP012974.1_2138201_2138360_+,NA	NA|364aa|up_9|NZ_CP012974.1_2135884_2136976_+	NA	NA|35aa|up_8|NZ_CP012974.1_2137417_2137522_-	NA	NA|53aa|up_7|NZ_CP012974.1_2138201_2138360_+	NA	NA|286aa|up_6|NZ_CP012974.1_2139017_2139875_-	COG0561, Cof, Predicted hydrolases of the HAD superfamily [General function prediction only]	NA|261aa|up_5|NZ_CP012974.1_2139942_2140725_-	COG1119, ModF, ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]	NA|602aa|up_4|NZ_CP012974.1_2140956_2142762_-	PRK00331, PRK00331, isomerizing glutamine--fructose-6-phosphate transaminase	NA|513aa|up_3|NZ_CP012974.1_2143442_2144981_+	COG2213, MtlA, Phosphotransferase system, mannitol-specific IIBC component [Carbohydrate transport and metabolism]	NA|711aa|up_2|NZ_CP012974.1_2145015_2147148_+	COG3711, BglG, Transcriptional antiterminator [Transcription]	NA|145aa|up_1|NZ_CP012974.1_2147159_2147594_+	COG4668, MtlA, Mannitol/fructose-specific phosphotransferase system, IIA domain [Carbohydrate transport and metabolism]	NA|369aa|up_0|NZ_CP012974.1_2147593_2148700_+	PRK02318, PRK02318, mannitol-1-phosphate 5-dehydrogenase; Provisional	NA|452aa|down_0|NZ_CP012974.1_2156812_2158168_-	PRK14316, glmM, phosphoglucosamine mutase; Provisional	NA|311aa|down_1|NZ_CP012974.1_2158194_2159127_-	COG4856, COG4856, Uncharacterized protein conserved in bacteria [Function unknown]	NA|270aa|down_2|NZ_CP012974.1_2159128_2159938_-	COG1624, COG1624, Uncharacterized conserved protein [Function unknown]	NA|303aa|down_3|NZ_CP012974.1_2160126_2161035_-	cd09989, Arginase, Arginase family	NA|355aa|down_4|NZ_CP012974.1_2167270_2168335_-	pfam10609, ParA, NUBPL iron-transfer P-loop NTPase	NA|481aa|down_5|NZ_CP012974.1_2168482_2169925_-	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily	NA|158aa|down_6|NZ_CP012974.1_2170247_2170721_-	pfam17080, SepA, Multidrug Resistance efflux pump	NA|448aa|down_7|NZ_CP012974.1_2170819_2172163_-	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily	NA|228aa|down_8|NZ_CP012974.1_2172339_2173023_-	COG1272, COG1272, Predicted membrane protein, hemolysin III homolog [General function prediction only]	NA|396aa|down_9|NZ_CP012974.1_2173041_2174229_-	cd04193, UDPGlcNAc_PPase, UDPGlcNAc pyrophosphorylase catalayzes the synthesis of UDPGlcNAc
GCF_001611385.1_ASM161138v1	NZ_CP012974	Staphylococcus aureus strain ST20130943 chromosome, complete genome	9	2713453-2713589	9	CRISPRCasFinder	no		DinG,cas3,DEDDh,csa3,RT,WYL	Orphan	TATGTTGGGGCCCCGCCAACTTGCA	25	2	16	2713478-2713508|2713478-2713508|2713478-2713508|2713478-2713508|2713478-2713508|2713478-2713508|2713478-2713508|2713478-2713508|2713534-2713564|2713534-2713564|2713534-2713564|2713534-2713564|2713534-2713564|2713534-2713564|2713534-2713564|2713534-2713564	NZ_CP012974.1_796685-796715|NZ_CP012974.1_1100656-1100626|NZ_CP012974.1_796629-796659|NZ_CP012974.1_831873-831903|NZ_CP012974.1_880621-880591|NZ_CP012974.1_1184363-1184333|NZ_CP012974.1_2259692-2259722|NZ_CP012974.1_2259747-2259777|NZ_CP012974.1_113355-113325|NZ_CP012974.1_1026220-1026250|NZ_CP012974.1_1304372-1304342|NZ_CP012974.1_2294152-2294122|NZ_CP012974.1_2449064-2449034|NZ_CP012974.1_789537-789567|NZ_CP012974.1_831490-831520|NZ_CP012974.1_1905093-1905123	NA	2	2	Orphan	DinG,cas3,DEDDh,csa3,RT,WYL	NA,NA	NA|159aa|up_9|NZ_CP012974.1_2704897_2705374_-	PRK05528, PRK05528, peptide-methionine (S)-S-oxide reductase	NA|167aa|up_8|NZ_CP012974.1_2705376_2705877_-	pfam13673, Acetyltransf_10, Acetyltransferase (GNAT) domain	NA|256aa|up_7|NZ_CP012974.1_2706111_2706879_-	COG4464, CapC, Capsular polysaccharide biosynthesis protein [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]	NA|231aa|up_6|NZ_CP012974.1_2706875_2707568_-	cd05387, BY-kinase, bacterial tyrosine-kinase	NA|221aa|up_5|NZ_CP012974.1_2707584_2708247_-	COG3944, COG3944, Capsular polysaccharide biosynthesis protein [Cell envelope biogenesis, outer membrane]	NA|187aa|up_4|NZ_CP012974.1_2709095_2709656_-	pfam18665, TetR_C_37, Tetracyclin repressor-like, C-terminal domain	NA|413aa|up_3|NZ_CP012974.1_2709819_2711058_+	TIGR03937, Poly-beta-16-N-acetyl-D-glucosamine_synthase, poly-beta-1,6 N-acetyl-D-glucosamine synthase	NA|102aa|up_2|NZ_CP012974.1_2711021_2711327_+	TIGR03932, IcaD_partial, intracellular adhesion protein D	NA|291aa|up_1|NZ_CP012974.1_2711323_2712196_+	TIGR03933, Poly-beta-16-N-acetyl-D-glucosamine_N-deacetylase, intercellular adhesin biosynthesis polysaccharide N-deacetylase	NA|351aa|up_0|NZ_CP012974.1_2712182_2713235_+	COG3936, COG3936, Protein involved in polysaccharide intercellular adhesin (PIA) synthesis/biofilm formation [Carbohydrate transport and metabolism]	NA|681aa|down_0|NZ_CP012974.1_2713680_2715723_-	COG1075, LipA, Predicted acetyltransferases and hydrolases with the alpha/beta hydrolase fold [General function prediction only]	NA|211aa|down_1|NZ_CP012974.1_2716806_2717439_-	PRK02759, PRK02759, bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP diphosphatase HisIE	NA|253aa|down_2|NZ_CP012974.1_2717435_2718194_-	PRK02083, PRK02083, imidazole glycerol phosphate synthase subunit HisF; Provisional	NA|235aa|down_3|NZ_CP012974.1_2718190_2718895_-	PRK13587, PRK13587, 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional	NA|193aa|down_4|NZ_CP012974.1_2718887_2719466_-	PRK13142, hisH, imidazole glycerol phosphate synthase subunit HisH; Provisional	NA|193aa|down_5|NZ_CP012974.1_2719462_2720041_-	cd07914, IGPD, Imidazoleglycerol-phosphate dehydratase	NA|338aa|down_6|NZ_CP012974.1_2720009_2721023_-	COG0079, HisC, Histidinol-phosphate/aromatic aminotransferase and cobyric acid decarboxylase [Amino acid transport and metabolism]	NA|417aa|down_7|NZ_CP012974.1_2721038_2722289_-	PRK13770, PRK13770, histidinol dehydrogenase; Provisional	NA|205aa|down_8|NZ_CP012974.1_2722281_2722896_-	PRK13584, hisG, ATP phosphoribosyltransferase	NA|273aa|down_9|NZ_CP012974.1_2722913_2723732_-	PRK12294, hisZ, ATP phosphoribosyltransferase regulatory subunit; Provisional
