assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_001611365.1_ASM161136v1	NZ_CP012976	Staphylococcus aureus strain ST20130942 chromosome, complete genome	1	138415-138499	1	CRISPRCasFinder	no		DinG,cas3,DEDDh,csa3,RT,WYL	Orphan	TTCTACAGGCAATGCAAGTTGGGGTG	26	1	4	138441-138473|138441-138473|138441-138473|138441-138473	NZ_CP012976.1_1026272-1026240|NZ_CP012976.1_1304337-1304369|NZ_CP012976.1_831544-831512|NZ_CP012976.1_999843-999811	NA	1	1	Orphan	DinG,cas3,DEDDh,csa3,RT,WYL	NA|402aa|up_9|NZ_CP012976.1_127560_128766_+,NA|68aa|down_0|NZ_CP012976.1_138560_138764_-	NA|402aa|up_9|NZ_CP012976.1_127560_128766_+	NA	NA|402aa|up_8|NZ_CP012976.1_128766_129972_+	cd03794, GT4_WbuB-like, Escherichia coli WbuB and similar proteins	NA|186aa|up_7|NZ_CP012976.1_129982_130540_+	COG2148, WcaJ, Sugar transferases involved in lipopolysaccharide synthesis [Cell envelope biogenesis, outer membrane]	NA|296aa|up_6|NZ_CP012976.1_130539_131427_+	cd05232, UDP_G4E_4_SDR_e, UDP-glucose 4 epimerase, subgroup 4, extended (e) SDRs	NA|421aa|up_5|NZ_CP012976.1_131480_132743_+	COG0677, WecC, UDP-N-acetyl-D-mannosaminuronate dehydrogenase [Cell envelope biogenesis, outer membrane]	NA|382aa|up_4|NZ_CP012976.1_132819_133965_+	COG0381, WecB, UDP-N-acetylglucosamine 2-epimerase [Cell envelope biogenesis, outer membrane]	NA|109aa|up_3|NZ_CP012976.1_134029_134356_-	PRK13313, PRK13313, staphylobilin-forming heme oxygenase IsdI	NA|128aa|up_2|NZ_CP012976.1_134362_134746_-	pfam04304, DUF454, Protein of unknown function (DUF454)	NA|496aa|up_1|NZ_CP012976.1_135172_136660_+	cd07117, ALDH_StaphAldA1, Uncharacterized Staphylococcus aureus AldA1 (SACOL0154) aldehyde dehydrogenase-like	NA|320aa|up_0|NZ_CP012976.1_137306_138266_+	COG1230, CzcD, Co/Zn/Cd efflux system component [Inorganic ion transport and metabolism]	NA|68aa|down_0|NZ_CP012976.1_138560_138764_-	NA	NA|171aa|down_1|NZ_CP012976.1_138942_139455_+	pfam14026, DUF4242, Protein of unknown function (DUF4242)	NA|247aa|down_2|NZ_CP012976.1_139796_140537_+	COG1116, TauB, ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]	NA|325aa|down_3|NZ_CP012976.1_140550_141525_+	cd13553, PBP2_NrtA_CpmA_like, Substrate binding domain of ABC-type nitrate/bicarbonate transporters, a member of the type 2 periplasmic binding fold superfamily	NA|254aa|down_4|NZ_CP012976.1_141521_142283_+	COG0600, TauC, ABC-type nitrate/sulfonate/bicarbonate transport system, permease component [Inorganic ion transport and metabolism]	NA|344aa|down_5|NZ_CP012976.1_142295_143327_+	COG1960, CaiA, Acyl-CoA dehydrogenases [Lipid metabolism]	NA|120aa|down_6|NZ_CP012976.1_143543_143903_+	COG5609, COG5609, Uncharacterized conserved protein [Function unknown]	NA|342aa|down_7|NZ_CP012976.1_144075_145101_+	PRK07574, PRK07574, NAD-dependent formate dehydrogenase	NA|417aa|down_8|NZ_CP012976.1_145486_146737_+	cd17329, MFS_MdtH_MDR_like, Multidrug resistance protein MdtH and similar multidrug resistance (MDR) transporters of the Major Facilitator Superfamily	NA|2392aa|down_9|NZ_CP012976.1_147183_154359_+	PRK12467, PRK12467, peptide synthase; Provisional
GCF_001611365.1_ASM161136v1	NZ_CP012976	Staphylococcus aureus strain ST20130942 chromosome, complete genome	2	627728-627820	2	CRISPRCasFinder	no		DinG,cas3,DEDDh,csa3,RT,WYL	Orphan	CTAAAGGTGAAGAGGAACGCAGTTGGATGCTA	32	0	0	NA	NA	NA	1	1	Orphan	DinG,cas3,DEDDh,csa3,RT,WYL	NA|36aa|up_3|NZ_CP012976.1_624397_624505_+,NA|169aa|down_4|NZ_CP012976.1_631567_632074_+,NA|239aa|down_5|NZ_CP012976.1_632235_632952_+	NA|313aa|up_9|NZ_CP012976.1_618601_619540_+	cd19083, AKR_AKR11A1_11D1, AKR11A and  AKR11D families of aldo-keto reductase (AKR)	NA|179aa|up_8|NZ_CP012976.1_619748_620285_+	COG0655, WrbA, Multimeric flavodoxin WrbA [General function prediction only]	NA|159aa|up_7|NZ_CP012976.1_620453_620930_+	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family	NA|432aa|up_6|NZ_CP012976.1_620969_622265_+	COG1078, COG1078, HD superfamily phosphohydrolases [General function prediction only]	NA|174aa|up_5|NZ_CP012976.1_622292_622814_+	pfam08741, YwhD, YwhD family	NA|337aa|up_4|NZ_CP012976.1_623312_624323_+	PRK09422, PRK09422, ethanol-active dehydrogenase/acetaldehyde-active reductase; Provisional	NA|36aa|up_3|NZ_CP012976.1_624397_624505_+	NA	NA|139aa|up_2|NZ_CP012976.1_624597_625014_+	COG4506, COG4506, Uncharacterized protein conserved in bacteria [Function unknown]	NA|554aa|up_1|NZ_CP012976.1_625010_626672_+	PRK01611, argS, arginyl-tRNA synthetase; Reviewed	NA|212aa|up_0|NZ_CP012976.1_626940_627576_+	COG2231, COG2231, Uncharacterized protein related to Endonuclease III [DNA replication, recombination, and repair]	NA|296aa|down_0|NZ_CP012976.1_627888_628776_+	cd01143, YvrC, Periplasmic binding protein YvrC	NA|317aa|down_1|NZ_CP012976.1_628923_629874_+	pfam01032, FecCD, FecCD transport family	NA|240aa|down_2|NZ_CP012976.1_629928_630648_+	COG1011, COG1011, Predicted hydrolase (HAD superfamily) [General function prediction only]	NA|267aa|down_3|NZ_CP012976.1_630631_631432_+	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]	NA|169aa|down_4|NZ_CP012976.1_631567_632074_+	NA	NA|239aa|down_5|NZ_CP012976.1_632235_632952_+	NA	NA|263aa|down_6|NZ_CP012976.1_633120_633909_+	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]	NA|125aa|down_7|NZ_CP012976.1_634158_634533_-	TIGR01889, Pleiotropic_Regulator_Of_Virulence, staphylococcal accessory regulator family	NA|310aa|down_8|NZ_CP012976.1_635480_636410_-	COG3238, COG3238, Uncharacterized protein conserved in bacteria [Function unknown]	NA|75aa|down_9|NZ_CP012976.1_636604_636829_-	pfam11148, DUF2922, Protein of unknown function (DUF2922)
GCF_001611365.1_ASM161136v1	NZ_CP012976	Staphylococcus aureus strain ST20130942 chromosome, complete genome	3	831816-831900	3	CRISPRCasFinder	no		DinG,cas3,DEDDh,csa3,RT,WYL	Orphan	CCAACTTGCACATTATTGTAAGCTGACTT	29	1	6	831845-831871|831845-831871|831845-831871|831845-831871|831845-831871|831845-831871	NZ_CP012976.1_796657-796683|NZ_CP012976.1_880667-880641|NZ_CP012976.1_1100645-1100619|NZ_CP012976.1_1607752-1607778|NZ_CP012976.1_880611-880585|NZ_CP012976.1_2259761-2259787	NA	1	1	Orphan	DinG,cas3,DEDDh,csa3,RT,WYL	NA,NA	NA|194aa|up_9|NZ_CP012976.1_824591_825173_+	COG0406, phoE, Broad specificity phosphatase PhoE and related phosphatases [General function prediction only]	NA|206aa|up_8|NZ_CP012976.1_825245_825863_-	COG1279, COG1279, Lysine efflux permease [General function prediction only]	NA|165aa|up_7|NZ_CP012976.1_826017_826512_-	pfam13420, Acetyltransf_4, Acetyltransferase (GNAT) domain	NA|141aa|up_6|NZ_CP012976.1_826910_827333_-	TIGR03561, organ_hyd_perox, peroxiredoxin, Ohr subfamily	NA|239aa|up_5|NZ_CP012976.1_827480_828197_+	PRK13575, PRK13575, type I 3-dehydroquinate dehydratase	NA|180aa|up_4|NZ_CP012976.1_828279_828819_+	cd02135, YdjA-like, nitroreductase family protein similar to Escherichia coli YdjA	NA|107aa|up_3|NZ_CP012976.1_828968_829289_-	cd02947, TRX_family, TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains	NA|119aa|up_2|NZ_CP012976.1_829432_829789_+	cd03036, ArsC_like, Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC	NA|127aa|up_1|NZ_CP012976.1_829946_830327_+	PRK01202, PRK01202, glycine cleavage system protein GcvH	NA|293aa|up_0|NZ_CP012976.1_830505_831384_+	COG3878, COG3878, Uncharacterized protein conserved in bacteria [Function unknown]	NA|129aa|down_0|NZ_CP012976.1_832180_832567_+	COG1658, COG1658, Small primase-like proteins (Toprim domain) [DNA replication, recombination, and repair]	NA|99aa|down_1|NZ_CP012976.1_832559_832856_+	cd02947, TRX_family, TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains	NA|342aa|down_2|NZ_CP012976.1_833105_834131_+	COG1135, AbcC, ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]	NA|232aa|down_3|NZ_CP012976.1_834123_834819_+	COG2011, AbcD, ABC-type metal ion transport system, permease component [Inorganic ion transport and metabolism]	NA|274aa|down_4|NZ_CP012976.1_834836_835658_+	COG1464, NlpA, ABC-type metal ion transport system, periplasmic component/surface antigen [Inorganic ion transport and metabolism]	NA|65aa|down_5|NZ_CP012976.1_836011_836206_+	COG3237, COG3237, Uncharacterized protein conserved in bacteria [Function unknown]	NA|284aa|down_6|NZ_CP012976.1_836438_837290_-	COG2035, COG2035, Predicted membrane protein [Function unknown]	NA|254aa|down_7|NZ_CP012976.1_837617_838379_+	COG0396, sufC, Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]	NA|436aa|down_8|NZ_CP012976.1_838476_839784_+	COG0719, SufB, Cysteine desulfurase activator SufB [Posttranslational modification, protein turnover, chaperones]	NA|417aa|down_9|NZ_CP012976.1_839889_841140_+	TIGR01979, Probable_cysteine_desulfurase, cysteine desulfurases, SufSfamily
GCF_001611365.1_ASM161136v1	NZ_CP012976	Staphylococcus aureus strain ST20130942 chromosome, complete genome	4	1100553-1100634	4	CRISPRCasFinder	no		DinG,cas3,DEDDh,csa3,RT,WYL	Orphan	TGCAAGTTGGCGGGGCCCCAACATAG	26	0	0	NA	NA	NA	1	1	Orphan	DinG,cas3,DEDDh,csa3,RT,WYL	NA|169aa|up_7|NZ_CP012976.1_1094509_1095016_+,NA|62aa|up_4|NZ_CP012976.1_1096815_1097001_-,NA|78aa|up_3|NZ_CP012976.1_1097622_1097856_-,NA|49aa|up_1|NZ_CP012976.1_1099964_1100111_+,NA|75aa|up_0|NZ_CP012976.1_1100067_1100292_+,NA|76aa|down_6|NZ_CP012976.1_1107647_1107875_+	NA|110aa|up_9|NZ_CP012976.1_1092739_1093069_+	pfam12199, efb-c, Extracellular fibrinogen binding protein C terminal	NA|134aa|up_8|NZ_CP012976.1_1093437_1093839_-	PRK13033, PRK13033, formyl peptide receptor-like 1 inhibitory protein; Reviewed	NA|169aa|up_7|NZ_CP012976.1_1094509_1095016_+	NA	NA|166aa|up_6|NZ_CP012976.1_1095274_1095772_+	pfam12199, efb-c, Extracellular fibrinogen binding protein C terminal	NA|117aa|up_5|NZ_CP012976.1_1095925_1096276_+	pfam11546, CompInhib_SCIN, Staphylococcal complement inhibitor SCIN	NA|62aa|up_4|NZ_CP012976.1_1096815_1097001_-	NA	NA|78aa|up_3|NZ_CP012976.1_1097622_1097856_-	NA	NA|320aa|up_2|NZ_CP012976.1_1098332_1099292_-	TIGR01002, synergohymenotropic_toxin, beta-channel forming cytolysin	NA|49aa|up_1|NZ_CP012976.1_1099964_1100111_+	NA	NA|75aa|up_0|NZ_CP012976.1_1100067_1100292_+	NA	NA|239aa|down_0|NZ_CP012976.1_1100849_1101566_-	PRK13350, PRK13350, superantigen-like protein; Reviewed	NA|242aa|down_1|NZ_CP012976.1_1101673_1102399_-	PRK13349, PRK13349, superantigen-like protein; Reviewed	NA|242aa|down_2|NZ_CP012976.1_1102493_1103219_-	PRK13043, PRK13043, superantigen-like protein; Reviewed	NA|334aa|down_3|NZ_CP012976.1_1103656_1104658_+	PRK04284, PRK04284, ornithine carbamoyltransferase; Provisional	NA|311aa|down_4|NZ_CP012976.1_1104680_1105613_+	PRK12353, PRK12353, putative amino acid kinase; Reviewed	NA|519aa|down_5|NZ_CP012976.1_1105784_1107341_+	COG1288, COG1288, Predicted membrane protein [Function unknown]	NA|76aa|down_6|NZ_CP012976.1_1107647_1107875_+	NA	NA|316aa|down_7|NZ_CP012976.1_1108179_1109127_-	cd09325, TDT_C4-dicarb_trans, C4-dicarboxylate transporters of the Tellurite-resistance/Dicarboxylate Transporter (TDT) family	NA|63aa|down_8|NZ_CP012976.1_1109375_1109564_+	COG2826, Tra8, Transposase and inactivated derivatives, IS30 family [DNA replication, recombination, and repair]	NA|45aa|down_9|NZ_CP012976.1_1110468_1110603_+	pfam05480, Staph_haemo, Staphylococcus haemolytic protein
GCF_001611365.1_ASM161136v1	NZ_CP012976	Staphylococcus aureus strain ST20130942 chromosome, complete genome	5	1607608-1607689	5	CRISPRCasFinder	no		DinG,cas3,DEDDh,csa3,RT,WYL	Orphan	CCCCAACTTCCATTGCCTGTAGAA	24	0	0	NA	NA	NA	1	1	Orphan	DinG,cas3,DEDDh,csa3,RT,WYL	NA,NA|49aa|down_3|NZ_CP012976.1_1611733_1611880_-,NA|43aa|down_8|NZ_CP012976.1_1614916_1615045_-	NA|208aa|up_9|NZ_CP012976.1_1596385_1597009_-	PRK05480, PRK05480, uridine/cytidine kinase; Provisional	NA|423aa|up_8|NZ_CP012976.1_1597008_1598277_-	COG0826, COG0826, Collagenase and related proteases [Posttranslational modification, protein turnover, chaperones]	NA|308aa|up_7|NZ_CP012976.1_1598288_1599212_-	COG0826, COG0826, Collagenase and related proteases [Posttranslational modification, protein turnover, chaperones]	NA|213aa|up_6|NZ_CP012976.1_1599214_1599853_-	COG4122, COG4122, Predicted O-methyltransferase [General function prediction only]	NA|103aa|up_5|NZ_CP012976.1_1600137_1600446_-	PRK13678, PRK13678, hypothetical protein; Provisional	NA|143aa|up_4|NZ_CP012976.1_1600460_1600889_-	COG0816, COG0816, Predicted endonuclease involved in recombination (possible Holliday junction resolvase in Mycoplasmas and B	NA|87aa|up_3|NZ_CP012976.1_1600892_1601153_-	PRK05473, IreB-like, IreB family regulatory phosphoprotein	NA|877aa|up_2|NZ_CP012976.1_1601215_1603846_-	PRK00252, alaS, alanyl-tRNA synthetase; Reviewed	NA|826aa|up_1|NZ_CP012976.1_1604188_1606666_-	TIGR01448, recD_rel, helicase, putative, RecD/TraA family	NA|223aa|up_0|NZ_CP012976.1_1606667_1607336_-	sd00006, TPR, Tetratricopeptide repeat	NA|373aa|down_0|NZ_CP012976.1_1607911_1609030_-	PRK00143, mnmA, tRNA-specific 2-thiouridylase MnmA; Reviewed	NA|381aa|down_1|NZ_CP012976.1_1609030_1610173_-	COG1104, NifS, Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes [Amino acid transport and metabolism]	NA|338aa|down_2|NZ_CP012976.1_1610484_1611498_+	TIGR03558, oxido_grp_1, luciferase family oxidoreductase, group 1	NA|49aa|down_3|NZ_CP012976.1_1611733_1611880_-	NA	NA|61aa|down_4|NZ_CP012976.1_1611919_1612102_-	COG3237, COG3237, Uncharacterized protein conserved in bacteria [Function unknown]	NA|141aa|down_5|NZ_CP012976.1_1612201_1612624_-	COG1959, COG1959, Predicted transcriptional regulator [Transcription]	NA|425aa|down_6|NZ_CP012976.1_1612708_1613983_+	PRK13342, PRK13342, recombination factor protein RarA; Reviewed	NA|258aa|down_7|NZ_CP012976.1_1614143_1614917_-	COG1179, COG1179, Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 1 [Coenzyme metabolism]	NA|43aa|down_8|NZ_CP012976.1_1614916_1615045_-	NA	NA|589aa|down_9|NZ_CP012976.1_1615377_1617144_-	PRK00476, aspS, aspartyl-tRNA synthetase; Validated
GCF_001611365.1_ASM161136v1	NZ_CP012976	Staphylococcus aureus strain ST20130942 chromosome, complete genome	6	1693692-1693777	6	CRISPRCasFinder	no		DinG,cas3,DEDDh,csa3,RT,WYL	Orphan	TTCTACAGACCATGCAAGTTGGGGTGGG	28	0	0	NA	NA	NA	1	1	Orphan	DinG,cas3,DEDDh,csa3,RT,WYL	NA,NA|38aa|down_4|NZ_CP012976.1_1698099_1698213_-	NA|423aa|up_9|NZ_CP012976.1_1678081_1679350_-	PRK07006, PRK07006, isocitrate dehydrogenase; Reviewed	NA|374aa|up_8|NZ_CP012976.1_1679398_1680520_-	PRK14035, PRK14035, citrate synthase; Provisional	NA|454aa|up_7|NZ_CP012976.1_1680867_1682229_+	COG1113, AnsP, Gamma-aminobutyrate permease and related permeases [Amino acid transport and metabolism]	NA|586aa|up_6|NZ_CP012976.1_1682576_1684334_-	PRK06354, PRK06354, pyruvate kinase; Provisional	NA|323aa|up_5|NZ_CP012976.1_1684355_1685324_-	PRK03202, PRK03202, ATP-dependent 6-phosphofructokinase	NA|315aa|up_4|NZ_CP012976.1_1685592_1686537_-	PRK05724, PRK05724, acetyl-CoA carboxylase carboxyltransferase subunit alpha; Validated	NA|286aa|up_3|NZ_CP012976.1_1686536_1687394_-	PRK05654, PRK05654, acetyl-CoA carboxylase carboxyltransferase subunit beta	NA|410aa|up_2|NZ_CP012976.1_1687588_1688818_-	PRK07232, PRK07232, bifunctional malic enzyme oxidoreductase/phosphotransacetylase; Reviewed	NA|1066aa|up_1|NZ_CP012976.1_1689267_1692465_-	COG0587, DnaE, DNA polymerase III, alpha subunit [DNA replication, recombination, and repair]	NA|314aa|up_0|NZ_CP012976.1_1692485_1693427_-	COG0618, COG0618, Exopolyphosphatase-related proteins [General function prediction only]	NA|433aa|down_0|NZ_CP012976.1_1693880_1695179_-	COG4109, COG4109, Predicted transcriptional regulator containing CBS domains [Transcription]	NA|138aa|down_1|NZ_CP012976.1_1695383_1695797_+	pfam00582, Usp, Universal stress protein family	NA|230aa|down_2|NZ_CP012976.1_1696101_1696791_-	PRK00685, PRK00685, metal-dependent hydrolase; Provisional	NA|352aa|down_3|NZ_CP012976.1_1696965_1698021_+	COG0006, PepP, Xaa-Pro aminopeptidase [Amino acid transport and metabolism]	NA|38aa|down_4|NZ_CP012976.1_1698099_1698213_-	NA	NA|373aa|down_5|NZ_CP012976.1_1698336_1699455_-	cd05305, L-AlaDH, Alanine dehydrogenase NAD-binding and catalytic domains	NA|167aa|down_6|NZ_CP012976.1_1699595_1700096_+	pfam00582, Usp, Universal stress protein family	NA|401aa|down_7|NZ_CP012976.1_1700341_1701544_-	PRK00180, PRK00180, acetate kinase A/propionate kinase 2; Reviewed	NA|316aa|down_8|NZ_CP012976.1_1701631_1702579_-	COG0827, COG0827, Adenine-specific DNA methylase [DNA replication, recombination, and repair]	NA|165aa|down_9|NZ_CP012976.1_1702701_1703196_-	PRK00522, tpx, thiol peroxidase
GCF_001611365.1_ASM161136v1	NZ_CP012976	Staphylococcus aureus strain ST20130942 chromosome, complete genome	7	2136986-2137075	7	CRISPRCasFinder	no	csa3	DinG,cas3,DEDDh,csa3,RT,WYL	Type I-A	CAACTTTAGTTGTTAGGGGCTCTT	24	0	0	NA	NA	NA	1	1	Orphan	DinG,cas3,DEDDh,csa3,RT,WYL	NA|77aa|up_5|NZ_CP012976.1_2131857_2132088_-,NA|364aa|up_0|NZ_CP012976.1_2135877_2136969_+,NA|35aa|down_0|NZ_CP012976.1_2137410_2137515_-,NA|53aa|down_1|NZ_CP012976.1_2138194_2138353_+	NA|237aa|up_9|NZ_CP012976.1_2127468_2128179_+	PRK05819, deoD, DeoD-type purine-nucleoside phosphorylase	NA|148aa|up_8|NZ_CP012976.1_2128299_2128743_-	COG0783, Dps, DNA-binding ferritin-like protein (oxidative damage protectant) [Inorganic ion transport and metabolism]	NA|138aa|up_7|NZ_CP012976.1_2128942_2129356_-	COG3011, COG3011, Predicted thiol-disulfide oxidoreductase [General function    prediction only]	NA|458aa|up_6|NZ_CP012976.1_2129812_2131186_-	pfam01878, EVE, EVE domain	NA|77aa|up_5|NZ_CP012976.1_2131857_2132088_-	NA	NA|313aa|up_4|NZ_CP012976.1_2132118_2133057_-	COG1482, ManA, Phosphomannose isomerase [Carbohydrate transport and metabolism]	NA|222aa|up_3|NZ_CP012976.1_2133492_2134158_-	cd05243, SDR_a5, atypical (a) SDRs, subgroup 5	csa3|107aa|up_2|NZ_CP012976.1_2134309_2134630_+	cd00090, HTH_ARSR, Arsenical Resistance Operon Repressor and similar prokaryotic, metal regulated homodimeric repressors	NA|327aa|up_1|NZ_CP012976.1_2134631_2135612_+	COG1230, CzcD, Co/Zn/Cd efflux system component [Inorganic ion transport and metabolism]	NA|364aa|up_0|NZ_CP012976.1_2135877_2136969_+	NA	NA|35aa|down_0|NZ_CP012976.1_2137410_2137515_-	NA	NA|53aa|down_1|NZ_CP012976.1_2138194_2138353_+	NA	NA|286aa|down_2|NZ_CP012976.1_2139010_2139868_-	COG0561, Cof, Predicted hydrolases of the HAD superfamily [General function prediction only]	NA|261aa|down_3|NZ_CP012976.1_2139935_2140718_-	COG1119, ModF, ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]	NA|602aa|down_4|NZ_CP012976.1_2140949_2142755_-	PRK00331, PRK00331, isomerizing glutamine--fructose-6-phosphate transaminase	NA|513aa|down_5|NZ_CP012976.1_2143435_2144974_+	COG2213, MtlA, Phosphotransferase system, mannitol-specific IIBC component [Carbohydrate transport and metabolism]	NA|711aa|down_6|NZ_CP012976.1_2145008_2147141_+	COG3711, BglG, Transcriptional antiterminator [Transcription]	NA|145aa|down_7|NZ_CP012976.1_2147152_2147587_+	COG4668, MtlA, Mannitol/fructose-specific phosphotransferase system, IIA domain [Carbohydrate transport and metabolism]	NA|369aa|down_8|NZ_CP012976.1_2147586_2148693_+	PRK02318, PRK02318, mannitol-1-phosphate 5-dehydrogenase; Provisional	NA|2503aa|down_9|NZ_CP012976.1_2149011_2156520_-	TIGR04263, cell_wall_surface_anchor_family_protein, SasC/Mrp/FmtB intercellular aggregation domain
GCF_001611365.1_ASM161136v1	NZ_CP012976	Staphylococcus aureus strain ST20130942 chromosome, complete genome	8	2149316-2149401	8	CRISPRCasFinder	no	csa3	DinG,cas3,DEDDh,csa3,RT,WYL	Type I-A	CCAACTGATTTTTGCGTATCATTAGT	26	0	0	NA	NA	NA	1	1	Orphan	DinG,cas3,DEDDh,csa3,RT,WYL	NA|364aa|up_9|NZ_CP012976.1_2135877_2136969_+,NA|35aa|up_8|NZ_CP012976.1_2137410_2137515_-,NA|53aa|up_7|NZ_CP012976.1_2138194_2138353_+,NA	NA|364aa|up_9|NZ_CP012976.1_2135877_2136969_+	NA	NA|35aa|up_8|NZ_CP012976.1_2137410_2137515_-	NA	NA|53aa|up_7|NZ_CP012976.1_2138194_2138353_+	NA	NA|286aa|up_6|NZ_CP012976.1_2139010_2139868_-	COG0561, Cof, Predicted hydrolases of the HAD superfamily [General function prediction only]	NA|261aa|up_5|NZ_CP012976.1_2139935_2140718_-	COG1119, ModF, ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]	NA|602aa|up_4|NZ_CP012976.1_2140949_2142755_-	PRK00331, PRK00331, isomerizing glutamine--fructose-6-phosphate transaminase	NA|513aa|up_3|NZ_CP012976.1_2143435_2144974_+	COG2213, MtlA, Phosphotransferase system, mannitol-specific IIBC component [Carbohydrate transport and metabolism]	NA|711aa|up_2|NZ_CP012976.1_2145008_2147141_+	COG3711, BglG, Transcriptional antiterminator [Transcription]	NA|145aa|up_1|NZ_CP012976.1_2147152_2147587_+	COG4668, MtlA, Mannitol/fructose-specific phosphotransferase system, IIA domain [Carbohydrate transport and metabolism]	NA|369aa|up_0|NZ_CP012976.1_2147586_2148693_+	PRK02318, PRK02318, mannitol-1-phosphate 5-dehydrogenase; Provisional	NA|452aa|down_0|NZ_CP012976.1_2156805_2158161_-	PRK14316, glmM, phosphoglucosamine mutase; Provisional	NA|311aa|down_1|NZ_CP012976.1_2158187_2159120_-	COG4856, COG4856, Uncharacterized protein conserved in bacteria [Function unknown]	NA|270aa|down_2|NZ_CP012976.1_2159121_2159931_-	COG1624, COG1624, Uncharacterized conserved protein [Function unknown]	NA|303aa|down_3|NZ_CP012976.1_2160119_2161028_-	cd09989, Arginase, Arginase family	NA|355aa|down_4|NZ_CP012976.1_2167266_2168331_-	pfam10609, ParA, NUBPL iron-transfer P-loop NTPase	NA|481aa|down_5|NZ_CP012976.1_2168478_2169921_-	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily	NA|158aa|down_6|NZ_CP012976.1_2170243_2170717_-	pfam17080, SepA, Multidrug Resistance efflux pump	NA|448aa|down_7|NZ_CP012976.1_2170815_2172159_-	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily	NA|228aa|down_8|NZ_CP012976.1_2172335_2173019_-	COG1272, COG1272, Predicted membrane protein, hemolysin III homolog [General function prediction only]	NA|396aa|down_9|NZ_CP012976.1_2173037_2174225_-	cd04193, UDPGlcNAc_PPase, UDPGlcNAc pyrophosphorylase catalayzes the synthesis of UDPGlcNAc
GCF_001611365.1_ASM161136v1	NZ_CP012976	Staphylococcus aureus strain ST20130942 chromosome, complete genome	9	2259676-2259762	9	CRISPRCasFinder	no		DinG,cas3,DEDDh,csa3,RT,WYL	Orphan	CCAACTTGCACATTATTGTAAGCTGACTTTC	31	1	2	2259707-2259731|2259707-2259731	NZ_CP012976.1_880665-880641|NZ_CP012976.1_1100643-1100619	NA	1	1	Orphan	DinG,cas3,DEDDh,csa3,RT,WYL	NA|55aa|up_9|NZ_CP012976.1_2250244_2250409_+,NA|106aa|up_8|NZ_CP012976.1_2250653_2250971_+,NA|84aa|up_5|NZ_CP012976.1_2256095_2256347_+,NA|62aa|up_0|NZ_CP012976.1_2259486_2259672_+,NA	NA|55aa|up_9|NZ_CP012976.1_2250244_2250409_+	NA	NA|106aa|up_8|NZ_CP012976.1_2250653_2250971_+	NA	NA|1056aa|up_7|NZ_CP012976.1_2251157_2254325_-	COG0841, AcrB, Cation/multidrug efflux pump [Defense mechanisms]	NA|422aa|up_6|NZ_CP012976.1_2254441_2255707_-	COG2348, COG2348, Peptidoglycan interpeptide bridge formation enzyme [Cell wall/membrane/envelope biogenesis]	NA|84aa|up_5|NZ_CP012976.1_2256095_2256347_+	NA	NA|255aa|up_4|NZ_CP012976.1_2256338_2257103_-	pfam13468, Glyoxalase_3, Glyoxalase-like domain	NA|147aa|up_3|NZ_CP012976.1_2257264_2257705_+	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein	NA|404aa|up_2|NZ_CP012976.1_2257697_2258909_+	cd17489, MFS_YfcJ_like, Escherichia coli YfcJ, YhhS, and similar transporters of the Major Facilitator Superfamily	NA|117aa|up_1|NZ_CP012976.1_2259010_2259361_-	TIGR01889, Pleiotropic_Regulator_Of_Virulence, staphylococcal accessory regulator family	NA|62aa|up_0|NZ_CP012976.1_2259486_2259672_+	NA	NA|341aa|down_0|NZ_CP012976.1_2259938_2260961_-	TIGR02666, Cyclic_pyranopterin_monophosphate_synthase, molybdenum cofactor biosynthesis protein A, bacterial	NA|200aa|down_1|NZ_CP012976.1_2260980_2261580_-	PRK00317, mobA, molybdopterin-guanine dinucleotide biosynthesis protein MobA; Reviewed	NA|78aa|down_2|NZ_CP012976.1_2261586_2261820_-	cd00754, Ubl_MoaD, ubiquitin-like (Ubl) domain found in molybdenum cofactor biosynthesis protein D (MoaD) and similar proteins	NA|149aa|down_3|NZ_CP012976.1_2261825_2262272_-	COG0314, MoaE, Molybdopterin converting factor, large subunit [Coenzyme metabolism]	NA|162aa|down_4|NZ_CP012976.1_2262285_2262771_-	COG1763, MobB, Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism]	NA|420aa|down_5|NZ_CP012976.1_2262767_2264027_-	cd00887, MoeA, MoeA family	NA|165aa|down_6|NZ_CP012976.1_2264089_2264584_+	PRK09364, moaC, cyclic pyranopterin monophosphate synthase MoaC	NA|169aa|down_7|NZ_CP012976.1_2264585_2265092_-	COG0521, MoaB, Molybdopterin biosynthesis enzymes [Coenzyme metabolism]	NA|335aa|down_8|NZ_CP012976.1_2265122_2266127_-	PRK07688, PRK07688, thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated	NA|202aa|down_9|NZ_CP012976.1_2266296_2266902_-	COG4148, ModC, ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]
GCF_001611365.1_ASM161136v1	NZ_CP012976	Staphylococcus aureus strain ST20130942 chromosome, complete genome	10	2448931-2449017	10	CRISPRCasFinder	no		DinG,cas3,DEDDh,csa3,RT,WYL	Orphan	TTCTACAGACAATGCAAGTTGGGGTGGG	28	1	9	2448959-2448989|2448959-2448989|2448959-2448989|2448959-2448989|2448959-2448989|2448959-2448989|2448959-2448989|2448959-2448989|2448959-2448989	NZ_CP012976.1_113313-113343|NZ_CP012976.1_789358-789328|NZ_CP012976.1_1026270-1026240|NZ_CP012976.1_1304339-1304369|NZ_CP012976.1_1905141-1905111|NZ_CP012976.1_831542-831512|NZ_CP012976.1_2294049-2294079|NZ_CP012976.1_789588-789558|NZ_CP012976.1_999841-999811	NA	1	1	Orphan	DinG,cas3,DEDDh,csa3,RT,WYL	NA|47aa|up_2|NZ_CP012976.1_2446106_2446247_-,NA|250aa|down_9|NZ_CP012976.1_2458718_2459468_+	NA|312aa|up_9|NZ_CP012976.1_2439223_2440159_-	PRK06522, PRK06522, 2-dehydropantoate 2-reductase; Reviewed	NA|467aa|up_8|NZ_CP012976.1_2440384_2441785_-	cd17321, MFS_MMR_MDR_like, Methylenomycin A resistance protein (also called MMR peptide) and similar multidrug resistance (MDR) transporters of the Major Facilitator Superfamily	NA|232aa|up_7|NZ_CP012976.1_2442069_2442765_-	COG1174, OpuBB, ABC-type proline/glycine betaine transport systems, permease component [Amino acid transport and metabolism]	NA|314aa|up_6|NZ_CP012976.1_2442764_2443706_-	cd13608, PBP2_OpuCC_like, Substrate-binding protein OpuCC of ABC-type osmoregulatory transporter and related proteins; the type 2 periplasmic-binding protein fold	NA|212aa|up_5|NZ_CP012976.1_2443722_2444358_-	COG1174, OpuBB, ABC-type proline/glycine betaine transport systems, permease component [Amino acid transport and metabolism]	NA|409aa|up_4|NZ_CP012976.1_2444354_2445581_-	COG1125, OpuBA, ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]	NA|40aa|up_3|NZ_CP012976.1_2445907_2446027_-	pfam14762, HPS3_Mid, Hermansky-Pudlak syndrome 3, middle region	NA|47aa|up_2|NZ_CP012976.1_2446106_2446247_-	NA	NA|200aa|up_1|NZ_CP012976.1_2446250_2446850_-	COG4430, COG4430, Uncharacterized protein conserved in bacteria [Function unknown]	NA|546aa|up_0|NZ_CP012976.1_2447029_2448667_+	COG0531, PotE, Amino acid transporters [Amino acid transport and metabolism]	NA|451aa|down_0|NZ_CP012976.1_2449333_2450686_+	COG2272, PnbA, Carboxylesterase type B [Lipid metabolism]	NA|396aa|down_1|NZ_CP012976.1_2450747_2451935_-	COG2814, AraJ, Arabinose efflux permease [Carbohydrate transport and metabolism]	NA|259aa|down_2|NZ_CP012976.1_2452330_2453107_-	COG0390, COG0390, ABC-type uncharacterized transport system, permease component [General function prediction only]	NA|221aa|down_3|NZ_CP012976.1_2453099_2453762_-	COG4619, COG4619, ABC-type uncharacterized transport system, ATPase component [General function prediction only]	NA|359aa|down_4|NZ_CP012976.1_2454009_2455086_-	cd05656, M42_Frv, M42 Peptidase, endoglucanases	NA|89aa|down_5|NZ_CP012976.1_2455441_2455708_-	COG4115, COG4115, Uncharacterized protein conserved in bacteria [Function unknown]	NA|86aa|down_6|NZ_CP012976.1_2455707_2455965_-	COG2161, StbD, Antitoxin of toxin-antitoxin stability system [Cell division and chromosome partitioning]	NA|152aa|down_7|NZ_CP012976.1_2456323_2456779_+	COG4808, COG4808, Uncharacterized protein conserved in bacteria [Function unknown]	NA|526aa|down_8|NZ_CP012976.1_2456946_2458524_-	COG0069, GltB, Glutamate synthase domain 2 [Amino acid transport and metabolism]	NA|250aa|down_9|NZ_CP012976.1_2458718_2459468_+	NA
GCF_001611365.1_ASM161136v1	NZ_CP012976	Staphylococcus aureus strain ST20130942 chromosome, complete genome	11	2713386-2713522	11	CRISPRCasFinder	no		DinG,cas3,DEDDh,csa3,RT,WYL	Orphan	TATGTTGGGGCCCCGCCAACTTGCA	25	2	13	2713411-2713441|2713411-2713441|2713411-2713441|2713411-2713441|2713411-2713441|2713411-2713441|2713467-2713497|2713467-2713497|2713467-2713497|2713467-2713497|2713467-2713497|2713467-2713497|2713467-2713497	NZ_CP012976.1_796694-796724|NZ_CP012976.1_1100664-1100634|NZ_CP012976.1_796638-796668|NZ_CP012976.1_831882-831912|NZ_CP012976.1_880630-880600|NZ_CP012976.1_1184371-1184341|NZ_CP012976.1_113355-113325|NZ_CP012976.1_1026228-1026258|NZ_CP012976.1_1304381-1304351|NZ_CP012976.1_2294091-2294061|NZ_CP012976.1_789546-789576|NZ_CP012976.1_831500-831530|NZ_CP012976.1_1905099-1905129	NA	2	2	Orphan	DinG,cas3,DEDDh,csa3,RT,WYL	NA,NA|57aa|down_1|NZ_CP012976.1_2716376_2716547_-	NA|159aa|up_9|NZ_CP012976.1_2704830_2705307_-	PRK05528, PRK05528, peptide-methionine (S)-S-oxide reductase	NA|167aa|up_8|NZ_CP012976.1_2705309_2705810_-	pfam13673, Acetyltransf_10, Acetyltransferase (GNAT) domain	NA|256aa|up_7|NZ_CP012976.1_2706044_2706812_-	COG4464, CapC, Capsular polysaccharide biosynthesis protein [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]	NA|231aa|up_6|NZ_CP012976.1_2706808_2707501_-	cd05387, BY-kinase, bacterial tyrosine-kinase	NA|221aa|up_5|NZ_CP012976.1_2707517_2708180_-	COG3944, COG3944, Capsular polysaccharide biosynthesis protein [Cell envelope biogenesis, outer membrane]	NA|187aa|up_4|NZ_CP012976.1_2709028_2709589_-	pfam18665, TetR_C_37, Tetracyclin repressor-like, C-terminal domain	NA|413aa|up_3|NZ_CP012976.1_2709752_2710991_+	TIGR03937, Poly-beta-16-N-acetyl-D-glucosamine_synthase, poly-beta-1,6 N-acetyl-D-glucosamine synthase	NA|102aa|up_2|NZ_CP012976.1_2710954_2711260_+	TIGR03932, IcaD_partial, intracellular adhesion protein D	NA|291aa|up_1|NZ_CP012976.1_2711256_2712129_+	TIGR03933, Poly-beta-16-N-acetyl-D-glucosamine_N-deacetylase, intercellular adhesin biosynthesis polysaccharide N-deacetylase	NA|351aa|up_0|NZ_CP012976.1_2712115_2713168_+	COG3936, COG3936, Protein involved in polysaccharide intercellular adhesin (PIA) synthesis/biofilm formation [Carbohydrate transport and metabolism]	NA|681aa|down_0|NZ_CP012976.1_2713613_2715656_-	COG1075, LipA, Predicted acetyltransferases and hydrolases with the alpha/beta hydrolase fold [General function prediction only]	NA|57aa|down_1|NZ_CP012976.1_2716376_2716547_-	NA	NA|211aa|down_2|NZ_CP012976.1_2716739_2717372_-	PRK02759, PRK02759, bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP diphosphatase HisIE	NA|253aa|down_3|NZ_CP012976.1_2717368_2718127_-	PRK02083, PRK02083, imidazole glycerol phosphate synthase subunit HisF; Provisional	NA|235aa|down_4|NZ_CP012976.1_2718123_2718828_-	PRK13587, PRK13587, 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional	NA|193aa|down_5|NZ_CP012976.1_2718820_2719399_-	PRK13142, hisH, imidazole glycerol phosphate synthase subunit HisH; Provisional	NA|193aa|down_6|NZ_CP012976.1_2719395_2719974_-	cd07914, IGPD, Imidazoleglycerol-phosphate dehydratase	NA|338aa|down_7|NZ_CP012976.1_2719942_2720956_-	COG0079, HisC, Histidinol-phosphate/aromatic aminotransferase and cobyric acid decarboxylase [Amino acid transport and metabolism]	NA|417aa|down_8|NZ_CP012976.1_2720971_2722222_-	PRK13770, PRK13770, histidinol dehydrogenase; Provisional	NA|205aa|down_9|NZ_CP012976.1_2722214_2722829_-	PRK13584, hisG, ATP phosphoribosyltransferase
