assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_001611345.1_ASM161134v1	NZ_CP012978	Staphylococcus aureus strain ST20130941 chromosome, complete genome	1	771085-771165	1	CRISPRCasFinder	no	cas3	cas3,DEDDh,DinG,csa3,WYL	Unclear	TTCTTTATGTTGGGGCCCCGCCAACT	26	1	14	771111-771139|771111-771139|771111-771139|771111-771139|771111-771139|771111-771139|771111-771139|771111-771139|771111-771139|771111-771139|771111-771139|771111-771139|771111-771139|771111-771139	NZ_CP012978.1_1090466-1090438|NZ_CP012978.1_2637690-2637718|NZ_CP012978.1_249535-249507|NZ_CP012978.1_328273-328245|NZ_CP012978.1_1569178-1569206|NZ_CP012978.1_1690248-1690220|NZ_CP012978.1_1745441-1745413|NZ_CP012978.1_130293-130265|NZ_CP012978.1_130351-130323|NZ_CP012978.1_1178529-1178501|NZ_CP012978.1_1903388-1903416|NZ_CP012978.1_2202469-2202497|NZ_CP012978.1_2393417-2393389|NZ_CP012978.1_2393475-2393447	NA	1	1	Unclear	cas3,DEDDh,DinG,csa3,WYL	NA|35aa|up_7|NZ_CP012978.1_761998_762103_+,NA|36aa|up_5|NZ_CP012978.1_763535_763643_+,NA	NA|191aa|up_9|NZ_CP012978.1_758439_759012_+	COG1544, COG1544, Ribosome-associated protein Y (PSrp-1) [Translation, ribosomal structure and biogenesis]	NA|844aa|up_8|NZ_CP012978.1_759425_761957_+	PRK12904, PRK12904, preprotein translocase subunit SecA; Reviewed	NA|35aa|up_7|NZ_CP012978.1_761998_762103_+	NA	NA|370aa|up_6|NZ_CP012978.1_762271_763382_+	PRK00578, prfB, peptide chain release factor 2; Validated	NA|36aa|up_5|NZ_CP012978.1_763535_763643_+	NA	NA|280aa|up_4|NZ_CP012978.1_763790_764630_+	COG3942, COG3942, Surface antigen [General function prediction only]	NA|217aa|up_3|NZ_CP012978.1_764803_765454_+	pfam12917, HD_2, HD containing hydrolase-like enzyme	NA|79aa|up_2|NZ_CP012978.1_765450_765687_+	COG4897, CsbA, Uncharacterized protein conserved in bacteria [Function unknown]	NA|662aa|up_1|NZ_CP012978.1_765955_767941_+	PRK05298, PRK05298, excinuclease ABC subunit UvrB	NA|949aa|up_0|NZ_CP012978.1_767948_770795_+	PRK00349, uvrA, excinuclease ABC subunit UvrA	NA|311aa|down_0|NZ_CP012978.1_771401_772334_+	PRK05428, PRK05428, HPr kinase/phosphorylase; Provisional	NA|280aa|down_1|NZ_CP012978.1_772339_773179_+	PRK12437, PRK12437, prolipoprotein diacylglyceryl transferase; Reviewed	NA|162aa|down_2|NZ_CP012978.1_773186_773672_+	cd04647, LbH_MAT_like, Maltose O-acyltransferase (MAT)-like: This family is composed of maltose O-acetyltransferase, galactoside O-acetyltransferase (GAT), xenobiotic acyltransferase (XAT) and similar proteins	NA|480aa|down_3|NZ_CP012978.1_773679_775119_+	sd00008, TPR_YbbN, C-terminal Tetratricopeptide repeat (TPR) region of YbbN and similar motifs	NA|312aa|down_4|NZ_CP012978.1_775185_776121_+	TIGR01292, Thioredoxin_reductase, thioredoxin-disulfide reductase	NA|304aa|down_5|NZ_CP012978.1_776945_777857_+	COG1660, COG1660, Predicted P-loop-containing kinase [General function prediction only]	NA|332aa|down_6|NZ_CP012978.1_777853_778849_+	TIGR01826, Putative_gluconeogenesis_factor, conserved hypothetical protein, cofD-related	NA|315aa|down_7|NZ_CP012978.1_778959_779904_+	TIGR00647, DNA_bind_WhiA, DNA-binding protein WhiA	NA|196aa|down_8|NZ_CP012978.1_780476_781064_+	PRK00277, clpP, ATP-dependent Clp protease proteolytic subunit; Reviewed	NA|301aa|down_9|NZ_CP012978.1_781306_782209_-	COG1090, COG1090, Predicted nucleoside-diphosphate sugar epimerase [General function prediction only]
GCF_001611345.1_ASM161134v1	NZ_CP012978	Staphylococcus aureus strain ST20130941 chromosome, complete genome	2	776578-776661	2	CRISPRCasFinder	no	cas3	cas3,DEDDh,DinG,csa3,WYL	Unclear	TCTGTGTTGGCGCCCACACCCCAACT	26	1	5	776604-776635|776604-776635|776604-776635|776604-776635|776604-776635	NZ_CP012978.1_1019865-1019896|NZ_CP012978.1_1302918-1302887|NZ_CP012978.1_1390591-1390622|NZ_CP012978.1_1893980-1894011|NZ_CP012978.1_1601746-1601777	NA	1	1	Unclear	cas3,DEDDh,DinG,csa3,WYL	NA,NA	NA|280aa|up_9|NZ_CP012978.1_763790_764630_+	COG3942, COG3942, Surface antigen [General function prediction only]	NA|217aa|up_8|NZ_CP012978.1_764803_765454_+	pfam12917, HD_2, HD containing hydrolase-like enzyme	NA|79aa|up_7|NZ_CP012978.1_765450_765687_+	COG4897, CsbA, Uncharacterized protein conserved in bacteria [Function unknown]	NA|662aa|up_6|NZ_CP012978.1_765955_767941_+	PRK05298, PRK05298, excinuclease ABC subunit UvrB	NA|949aa|up_5|NZ_CP012978.1_767948_770795_+	PRK00349, uvrA, excinuclease ABC subunit UvrA	NA|311aa|up_4|NZ_CP012978.1_771401_772334_+	PRK05428, PRK05428, HPr kinase/phosphorylase; Provisional	NA|280aa|up_3|NZ_CP012978.1_772339_773179_+	PRK12437, PRK12437, prolipoprotein diacylglyceryl transferase; Reviewed	NA|162aa|up_2|NZ_CP012978.1_773186_773672_+	cd04647, LbH_MAT_like, Maltose O-acyltransferase (MAT)-like: This family is composed of maltose O-acetyltransferase, galactoside O-acetyltransferase (GAT), xenobiotic acyltransferase (XAT) and similar proteins	NA|480aa|up_1|NZ_CP012978.1_773679_775119_+	sd00008, TPR_YbbN, C-terminal Tetratricopeptide repeat (TPR) region of YbbN and similar motifs	NA|312aa|up_0|NZ_CP012978.1_775185_776121_+	TIGR01292, Thioredoxin_reductase, thioredoxin-disulfide reductase	NA|304aa|down_0|NZ_CP012978.1_776945_777857_+	COG1660, COG1660, Predicted P-loop-containing kinase [General function prediction only]	NA|332aa|down_1|NZ_CP012978.1_777853_778849_+	TIGR01826, Putative_gluconeogenesis_factor, conserved hypothetical protein, cofD-related	NA|315aa|down_2|NZ_CP012978.1_778959_779904_+	TIGR00647, DNA_bind_WhiA, DNA-binding protein WhiA	NA|196aa|down_3|NZ_CP012978.1_780476_781064_+	PRK00277, clpP, ATP-dependent Clp protease proteolytic subunit; Reviewed	NA|301aa|down_4|NZ_CP012978.1_781306_782209_-	COG1090, COG1090, Predicted nucleoside-diphosphate sugar epimerase [General function prediction only]	NA|210aa|down_5|NZ_CP012978.1_782911_783541_+	PRK00409, PRK00409, recombination and DNA strand exchange inhibitor protein; Reviewed	NA|338aa|down_6|NZ_CP012978.1_784351_785365_+	COG2390, DeoR, Transcriptional regulator, contains sigma factor-related N-terminal domain [Transcription]	NA|337aa|down_7|NZ_CP012978.1_785417_786428_+	TIGR01534, Glyceraldehyde-3-phosphate_dehydrogenase, glyceraldehyde-3-phosphate dehydrogenase, type I	NA|397aa|down_8|NZ_CP012978.1_786565_787756_+	PRK00073, pgk, phosphoglycerate kinase; Provisional	NA|254aa|down_9|NZ_CP012978.1_787877_788639_+	PRK00042, tpiA, triosephosphate isomerase; Provisional
GCF_001611345.1_ASM161134v1	NZ_CP012978	Staphylococcus aureus strain ST20130941 chromosome, complete genome	3	783847-783926	3	CRISPRCasFinder	no		cas3,DEDDh,DinG,csa3,WYL	Orphan	TGTTGGGCCCCACCCCAACTTGCA	24	1	13	783871-783902|783871-783902|783871-783902|783871-783902|783871-783902|783871-783902|783871-783902|783871-783902|783871-783902|783871-783902|783871-783902|783871-783902|783871-783902	NZ_CP012978.1_130289-130258|NZ_CP012978.1_130347-130316|NZ_CP012978.1_1178525-1178494|NZ_CP012978.1_1302914-1302883|NZ_CP012978.1_1390595-1390626|NZ_CP012978.1_1893984-1894015|NZ_CP012978.1_2393413-2393382|NZ_CP012978.1_2393471-2393440|NZ_CP012978.1_249531-249500|NZ_CP012978.1_249586-249555|NZ_CP012978.1_893621-893652|NZ_CP012978.1_1569182-1569213|NZ_CP012978.1_1601750-1601781	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,WYL	NA,NA|153aa|down_6|NZ_CP012978.1_791931_792390_+	NA|280aa|up_9|NZ_CP012978.1_772339_773179_+	PRK12437, PRK12437, prolipoprotein diacylglyceryl transferase; Reviewed	NA|162aa|up_8|NZ_CP012978.1_773186_773672_+	cd04647, LbH_MAT_like, Maltose O-acyltransferase (MAT)-like: This family is composed of maltose O-acetyltransferase, galactoside O-acetyltransferase (GAT), xenobiotic acyltransferase (XAT) and similar proteins	NA|480aa|up_7|NZ_CP012978.1_773679_775119_+	sd00008, TPR_YbbN, C-terminal Tetratricopeptide repeat (TPR) region of YbbN and similar motifs	NA|312aa|up_6|NZ_CP012978.1_775185_776121_+	TIGR01292, Thioredoxin_reductase, thioredoxin-disulfide reductase	NA|304aa|up_5|NZ_CP012978.1_776945_777857_+	COG1660, COG1660, Predicted P-loop-containing kinase [General function prediction only]	NA|332aa|up_4|NZ_CP012978.1_777853_778849_+	TIGR01826, Putative_gluconeogenesis_factor, conserved hypothetical protein, cofD-related	NA|315aa|up_3|NZ_CP012978.1_778959_779904_+	TIGR00647, DNA_bind_WhiA, DNA-binding protein WhiA	NA|196aa|up_2|NZ_CP012978.1_780476_781064_+	PRK00277, clpP, ATP-dependent Clp protease proteolytic subunit; Reviewed	NA|301aa|up_1|NZ_CP012978.1_781306_782209_-	COG1090, COG1090, Predicted nucleoside-diphosphate sugar epimerase [General function prediction only]	NA|210aa|up_0|NZ_CP012978.1_782911_783541_+	PRK00409, PRK00409, recombination and DNA strand exchange inhibitor protein; Reviewed	NA|338aa|down_0|NZ_CP012978.1_784351_785365_+	COG2390, DeoR, Transcriptional regulator, contains sigma factor-related N-terminal domain [Transcription]	NA|337aa|down_1|NZ_CP012978.1_785417_786428_+	TIGR01534, Glyceraldehyde-3-phosphate_dehydrogenase, glyceraldehyde-3-phosphate dehydrogenase, type I	NA|397aa|down_2|NZ_CP012978.1_786565_787756_+	PRK00073, pgk, phosphoglycerate kinase; Provisional	NA|254aa|down_3|NZ_CP012978.1_787877_788639_+	PRK00042, tpiA, triosephosphate isomerase; Provisional	NA|506aa|down_4|NZ_CP012978.1_788641_790159_+	PRK05434, PRK05434, 2,3-bisphosphoglycerate-independent phosphoglycerate mutase	NA|435aa|down_5|NZ_CP012978.1_790288_791593_+	PRK00077, eno, enolase; Provisional	NA|153aa|down_6|NZ_CP012978.1_791931_792390_+	NA	NA|78aa|down_7|NZ_CP012978.1_792456_792690_+	COG1314, SecG, Preprotein translocase subunit SecG [Intracellular trafficking and secretion]	NA|247aa|down_8|NZ_CP012978.1_792805_793546_+	COG1647, COG1647, Esterase/lipase [General function prediction only]	NA|791aa|down_9|NZ_CP012978.1_793579_795952_+	TIGR02063, Ribonuclease_R, ribonuclease R
GCF_001611345.1_ASM161134v1	NZ_CP012978	Staphylococcus aureus strain ST20130941 chromosome, complete genome	4	993276-993417	4	CRISPRCasFinder	no		cas3,DEDDh,DinG,csa3,WYL	Orphan	TGTTGGGGCCCATCCCCCAACTTGCA	26	2	21	993302-993332|993302-993332|993302-993332|993302-993332|993302-993332|993302-993332|993302-993332|993302-993332|993302-993332|993302-993332|993302-993332|993302-993332|993302-993332|993302-993332|993302-993332|993302-993332|993302-993332|993302-993332|993302-993332|993359-993391|993359-993391	NZ_CP012978.1_130289-130259|NZ_CP012978.1_130347-130317|NZ_CP012978.1_1019869-1019899|NZ_CP012978.1_1178525-1178495|NZ_CP012978.1_1302914-1302884|NZ_CP012978.1_1390595-1390625|NZ_CP012978.1_1893984-1894014|NZ_CP012978.1_2393413-2393383|NZ_CP012978.1_2393471-2393441|NZ_CP012978.1_249531-249501|NZ_CP012978.1_249586-249556|NZ_CP012978.1_328269-328239|NZ_CP012978.1_893621-893651|NZ_CP012978.1_1569182-1569212|NZ_CP012978.1_1601750-1601780|NZ_CP012978.1_1745437-1745407|NZ_CP012978.1_1090462-1090432|NZ_CP012978.1_1903392-1903422|NZ_CP012978.1_2202473-2202503|NZ_CP012978.1_328156-328124|NZ_CP012978.1_1390536-1390568	NA	2	2	Orphan	cas3,DEDDh,DinG,csa3,WYL	NA|41aa|up_1|NZ_CP012978.1_992296_992419_+,NA	NA|145aa|up_9|NZ_CP012978.1_983519_983954_-	COG2153, ElaA, Predicted acyltransferase [General function prediction only]	NA|157aa|up_8|NZ_CP012978.1_984108_984579_-	pfam10804, DUF2538, Protein of unknown function (DUF2538)	NA|406aa|up_7|NZ_CP012978.1_984626_985844_-	COG1316, LytR, Transcriptional regulator [Transcription]	NA|398aa|up_6|NZ_CP012978.1_986294_987488_+	pfam00144, Beta-lactamase, Beta-lactamase	NA|93aa|up_5|NZ_CP012978.1_988024_988303_-	COG3125, CyoD, Heme/copper-type cytochrome/quinol oxidase, subunit 4 [Energy production and conversion]	NA|202aa|up_4|NZ_CP012978.1_988311_988917_-	TIGR02897, AA3-600_quinol_oxidase_subunit_III, cytochrome aa3 quinol oxidase, subunit III	NA|663aa|up_3|NZ_CP012978.1_988906_990895_-	TIGR02882, cytochrome_aa3_quinol_oxidase_subunit_I, cytochrome aa3 quinol oxidase, subunit I	NA|367aa|up_2|NZ_CP012978.1_990894_991995_-	TIGR01432, AA3-600_quinol_oxidase_subunit_II, cytochrome aa3 quinol oxidase, subunit II	NA|41aa|up_1|NZ_CP012978.1_992296_992419_+	NA	NA|106aa|up_0|NZ_CP012978.1_992566_992884_-	pfam16403, DUF5011, Domain of unknown function (DUF5011)	NA|287aa|down_0|NZ_CP012978.1_993803_994664_-	PRK14175, PRK14175, bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD	NA|161aa|down_1|NZ_CP012978.1_994864_995347_+	COG0041, PurE, Phosphoribosylcarboxyaminoimidazole (NCAIR) mutase [Nucleotide transport and metabolism]	NA|375aa|down_2|NZ_CP012978.1_995333_996458_+	PRK06019, PRK06019, phosphoribosylaminoimidazole carboxylase ATPase subunit; Reviewed	NA|235aa|down_3|NZ_CP012978.1_996461_997166_+	PRK09362, PRK09362, phosphoribosylaminoimidazole-succinocarboxamide synthase; Reviewed	NA|88aa|down_4|NZ_CP012978.1_997165_997429_+	COG1828, PurS, Phosphoribosylformylglycinamidine (FGAM) synthase, PurS component [Nucleotide transport and metabolism]	NA|224aa|down_5|NZ_CP012978.1_997430_998102_+	PRK03619, PRK03619, phosphoribosylformylglycinamidine synthase subunit PurQ	NA|730aa|down_6|NZ_CP012978.1_998094_1000284_+	PRK01213, PRK01213, phosphoribosylformylglycinamidine synthase subunit PurL	NA|495aa|down_7|NZ_CP012978.1_1000262_1001747_+	PRK07272, PRK07272, amidophosphoribosyltransferase; Provisional	NA|343aa|down_8|NZ_CP012978.1_1001739_1002768_+	PRK05385, PRK05385, phosphoribosylaminoimidazole synthetase; Provisional	NA|189aa|down_9|NZ_CP012978.1_1002770_1003337_+	COG0299, PurN, Folate-dependent phosphoribosylglycinamide formyltransferase PurN [Nucleotide transport and metabolism]
GCF_001611345.1_ASM161134v1	NZ_CP012978	Staphylococcus aureus strain ST20130941 chromosome, complete genome	5	1090520-1090658	5	CRISPRCasFinder	no		cas3,DEDDh,DinG,csa3,WYL	Orphan	TGCAAGTTGGCGGGGGCCCAACATAGA	27	1	14	1090603-1090631|1090603-1090631|1090603-1090631|1090603-1090631|1090603-1090631|1090603-1090631|1090603-1090631|1090603-1090631|1090603-1090631|1090603-1090631|1090603-1090631|1090603-1090631|1090603-1090631|1090603-1090631	NZ_CP012978.1_1090491-1090519|NZ_CP012978.1_130433-130461|NZ_CP012978.1_234374-234346|NZ_CP012978.1_328128-328156|NZ_CP012978.1_783842-783814|NZ_CP012978.1_783955-783927|NZ_CP012978.1_821743-821715|NZ_CP012978.1_821799-821771|NZ_CP012978.1_1094515-1094543|NZ_CP012978.1_1178439-1178467|NZ_CP012978.1_1178611-1178639|NZ_CP012978.1_1302945-1302973|NZ_CP012978.1_1390564-1390536|NZ_CP012978.1_2368095-2368067	NA	2	2	Orphan	cas3,DEDDh,DinG,csa3,WYL	NA|56aa|up_5|NZ_CP012978.1_1086218_1086386_+,NA|169aa|up_2|NZ_CP012978.1_1088337_1088844_+,NA|62aa|down_0|NZ_CP012978.1_1090863_1091049_-,NA|78aa|down_1|NZ_CP012978.1_1091670_1091904_-,NA|49aa|down_3|NZ_CP012978.1_1094012_1094159_+,NA|75aa|down_4|NZ_CP012978.1_1094115_1094340_+	NA|589aa|up_9|NZ_CP012978.1_1081383_1083150_+	PRK08641, sdhA, succinate dehydrogenase flavoprotein subunit; Reviewed	NA|267aa|up_8|NZ_CP012978.1_1084195_1084996_+	PRK00865, PRK00865, glutamate racemase; Provisional	NA|196aa|up_7|NZ_CP012978.1_1085007_1085595_+	PRK14822, PRK14822, XTP/dITP diphosphatase	NA|168aa|up_6|NZ_CP012978.1_1085587_1086091_+	COG0622, COG0622, Predicted phosphoesterase [General function prediction only]	NA|56aa|up_5|NZ_CP012978.1_1086218_1086386_+	NA	NA|106aa|up_4|NZ_CP012978.1_1086579_1086897_+	pfam12199, efb-c, Extracellular fibrinogen binding protein C terminal	NA|134aa|up_3|NZ_CP012978.1_1087266_1087668_-	PRK13033, PRK13033, formyl peptide receptor-like 1 inhibitory protein; Reviewed	NA|169aa|up_2|NZ_CP012978.1_1088337_1088844_+	NA	NA|166aa|up_1|NZ_CP012978.1_1089103_1089601_+	pfam12199, efb-c, Extracellular fibrinogen binding protein C terminal	NA|117aa|up_0|NZ_CP012978.1_1089751_1090102_+	pfam11546, CompInhib_SCIN, Staphylococcal complement inhibitor SCIN	NA|62aa|down_0|NZ_CP012978.1_1090863_1091049_-	NA	NA|78aa|down_1|NZ_CP012978.1_1091670_1091904_-	NA	NA|320aa|down_2|NZ_CP012978.1_1092380_1093340_-	TIGR01002, synergohymenotropic_toxin, beta-channel forming cytolysin	NA|49aa|down_3|NZ_CP012978.1_1094012_1094159_+	NA	NA|75aa|down_4|NZ_CP012978.1_1094115_1094340_+	NA	NA|239aa|down_5|NZ_CP012978.1_1094728_1095445_-	PRK13350, PRK13350, superantigen-like protein; Reviewed	NA|242aa|down_6|NZ_CP012978.1_1095552_1096278_-	PRK13349, PRK13349, superantigen-like protein; Reviewed	NA|251aa|down_7|NZ_CP012978.1_1096345_1097098_-	PRK13043, PRK13043, superantigen-like protein; Reviewed	NA|334aa|down_8|NZ_CP012978.1_1097534_1098536_+	PRK04284, PRK04284, ornithine carbamoyltransferase; Provisional	NA|311aa|down_9|NZ_CP012978.1_1098558_1099491_+	PRK12353, PRK12353, putative amino acid kinase; Reviewed
GCF_001611345.1_ASM161134v1	NZ_CP012978	Staphylococcus aureus strain ST20130941 chromosome, complete genome	6	1601778-1601861	6	CRISPRCasFinder	no		cas3,DEDDh,DinG,csa3,WYL	Orphan	TCTGTGTTGGGCCCCATCCCCAACTT	26	1	7	1601804-1601835|1601804-1601835|1601804-1601835|1601804-1601835|1601804-1601835|1601804-1601835|1601804-1601835	NZ_CP012978.1_234343-234374|NZ_CP012978.1_328159-328128|NZ_CP012978.1_1094546-1094515|NZ_CP012978.1_1178470-1178439|NZ_CP012978.1_1302976-1302945|NZ_CP012978.1_1390533-1390564|NZ_CP012978.1_1745554-1745523	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,WYL	NA,NA|49aa|down_3|NZ_CP012978.1_1605866_1606013_-,NA|43aa|down_8|NZ_CP012978.1_1609049_1609178_-	NA|159aa|up_9|NZ_CP012978.1_1590007_1590484_-	PRK00226, greA, transcription elongation factor GreA; Reviewed	NA|423aa|up_8|NZ_CP012978.1_1591138_1592407_-	COG0826, COG0826, Collagenase and related proteases [Posttranslational modification, protein turnover, chaperones]	NA|308aa|up_7|NZ_CP012978.1_1592418_1593342_-	COG0826, COG0826, Collagenase and related proteases [Posttranslational modification, protein turnover, chaperones]	NA|213aa|up_6|NZ_CP012978.1_1593344_1593983_-	COG4122, COG4122, Predicted O-methyltransferase [General function prediction only]	NA|103aa|up_5|NZ_CP012978.1_1594267_1594576_-	PRK13678, PRK13678, hypothetical protein; Provisional	NA|143aa|up_4|NZ_CP012978.1_1594590_1595019_-	COG0816, COG0816, Predicted endonuclease involved in recombination (possible Holliday junction resolvase in Mycoplasmas and B	NA|87aa|up_3|NZ_CP012978.1_1595022_1595283_-	PRK05473, IreB-like, IreB family regulatory phosphoprotein	NA|877aa|up_2|NZ_CP012978.1_1595345_1597976_-	PRK00252, alaS, alanyl-tRNA synthetase; Reviewed	NA|826aa|up_1|NZ_CP012978.1_1598318_1600796_-	TIGR01448, recD_rel, helicase, putative, RecD/TraA family	NA|223aa|up_0|NZ_CP012978.1_1600797_1601466_-	sd00006, TPR, Tetratricopeptide repeat	NA|373aa|down_0|NZ_CP012978.1_1602043_1603162_-	PRK00143, mnmA, tRNA-specific 2-thiouridylase MnmA; Reviewed	NA|381aa|down_1|NZ_CP012978.1_1603162_1604305_-	COG1104, NifS, Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes [Amino acid transport and metabolism]	NA|338aa|down_2|NZ_CP012978.1_1604616_1605630_+	TIGR03558, oxido_grp_1, luciferase family oxidoreductase, group 1	NA|49aa|down_3|NZ_CP012978.1_1605866_1606013_-	NA	NA|61aa|down_4|NZ_CP012978.1_1606052_1606235_-	COG3237, COG3237, Uncharacterized protein conserved in bacteria [Function unknown]	NA|141aa|down_5|NZ_CP012978.1_1606334_1606757_-	COG1959, COG1959, Predicted transcriptional regulator [Transcription]	NA|425aa|down_6|NZ_CP012978.1_1606841_1608116_+	PRK13342, PRK13342, recombination factor protein RarA; Reviewed	NA|258aa|down_7|NZ_CP012978.1_1608276_1609050_-	COG1179, COG1179, Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 1 [Coenzyme metabolism]	NA|43aa|down_8|NZ_CP012978.1_1609049_1609178_-	NA	NA|589aa|down_9|NZ_CP012978.1_1609510_1611277_-	PRK00476, aspS, aspartyl-tRNA synthetase; Validated
GCF_001611345.1_ASM161134v1	NZ_CP012978	Staphylococcus aureus strain ST20130941 chromosome, complete genome	7	1687913-1687995	7	CRISPRCasFinder	no		cas3,DEDDh,DinG,csa3,WYL	Orphan	ATGCAAGTTGGGGTGGGGCCCCAACA	26	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,WYL	NA,NA|38aa|down_4|NZ_CP012978.1_1692448_1692562_-	NA|423aa|up_9|NZ_CP012978.1_1672292_1673561_-	PRK07006, PRK07006, isocitrate dehydrogenase; Reviewed	NA|374aa|up_8|NZ_CP012978.1_1673609_1674731_-	PRK14035, PRK14035, citrate synthase; Provisional	NA|454aa|up_7|NZ_CP012978.1_1675078_1676440_+	COG1113, AnsP, Gamma-aminobutyrate permease and related permeases [Amino acid transport and metabolism]	NA|586aa|up_6|NZ_CP012978.1_1676787_1678545_-	PRK06354, PRK06354, pyruvate kinase; Provisional	NA|323aa|up_5|NZ_CP012978.1_1678566_1679535_-	PRK03202, PRK03202, ATP-dependent 6-phosphofructokinase	NA|315aa|up_4|NZ_CP012978.1_1679803_1680748_-	PRK05724, PRK05724, acetyl-CoA carboxylase carboxyltransferase subunit alpha; Validated	NA|286aa|up_3|NZ_CP012978.1_1680747_1681605_-	PRK05654, PRK05654, acetyl-CoA carboxylase carboxyltransferase subunit beta	NA|410aa|up_2|NZ_CP012978.1_1681799_1683029_-	PRK07232, PRK07232, bifunctional malic enzyme oxidoreductase/phosphotransacetylase; Reviewed	NA|1066aa|up_1|NZ_CP012978.1_1683478_1686676_-	COG0587, DnaE, DNA polymerase III, alpha subunit [DNA replication, recombination, and repair]	NA|314aa|up_0|NZ_CP012978.1_1686696_1687638_-	COG0618, COG0618, Exopolyphosphatase-related proteins [General function prediction only]	NA|433aa|down_0|NZ_CP012978.1_1688089_1689388_-	COG4109, COG4109, Predicted transcriptional regulator containing CBS domains [Transcription]	NA|138aa|down_1|NZ_CP012978.1_1689592_1690006_+	pfam00582, Usp, Universal stress protein family	NA|230aa|down_2|NZ_CP012978.1_1690450_1691140_-	PRK00685, PRK00685, metal-dependent hydrolase; Provisional	NA|352aa|down_3|NZ_CP012978.1_1691314_1692370_+	COG0006, PepP, Xaa-Pro aminopeptidase [Amino acid transport and metabolism]	NA|38aa|down_4|NZ_CP012978.1_1692448_1692562_-	NA	NA|373aa|down_5|NZ_CP012978.1_1692685_1693804_-	cd05305, L-AlaDH, Alanine dehydrogenase NAD-binding and catalytic domains	NA|167aa|down_6|NZ_CP012978.1_1693944_1694445_+	pfam00582, Usp, Universal stress protein family	NA|401aa|down_7|NZ_CP012978.1_1694690_1695893_-	PRK00180, PRK00180, acetate kinase A/propionate kinase 2; Reviewed	NA|316aa|down_8|NZ_CP012978.1_1695980_1696928_-	COG0827, COG0827, Adenine-specific DNA methylase [DNA replication, recombination, and repair]	NA|165aa|down_9|NZ_CP012978.1_1697050_1697545_-	PRK00522, tpx, thiol peroxidase
GCF_001611345.1_ASM161134v1	NZ_CP012978	Staphylococcus aureus strain ST20130941 chromosome, complete genome	8	2352646-2352743	8	CRISPRCasFinder	no		cas3,DEDDh,DinG,csa3,WYL	Orphan	TTTCTGCGAATTTTATGAGCTAGAAAGGC	29	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,WYL	NA|35aa|up_2|NZ_CP012978.1_2350368_2350473_+,NA|40aa|down_0|NZ_CP012978.1_2352921_2353041_-	NA|200aa|up_9|NZ_CP012978.1_2343845_2344445_-	COG1651, DsbG, Protein-disulfide isomerase [Posttranslational modification, protein turnover, chaperones]	NA|121aa|up_8|NZ_CP012978.1_2344463_2344826_-	pfam14729, DUF4467, Domain of unknown function with cystatin-like fold (DUF4467)	NA|417aa|up_7|NZ_CP012978.1_2345080_2346331_+	pfam02388, FemAB, FemAB family	NA|244aa|up_6|NZ_CP012978.1_2346427_2347159_-	COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]	NA|240aa|up_5|NZ_CP012978.1_2347155_2347875_-	COG0765, HisM, ABC-type amino acid transport system, permease component [Amino acid transport and metabolism]	NA|260aa|up_4|NZ_CP012978.1_2347855_2348635_-	cd13711, PBP2_Ngo0372_TcyA, Substrate binding domain of ABC transporters involved in cystine import; the type 2 periplasmic binding protein fold	NA|480aa|up_3|NZ_CP012978.1_2348755_2350195_-	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily	NA|35aa|up_2|NZ_CP012978.1_2350368_2350473_+	NA	NA|229aa|up_1|NZ_CP012978.1_2350626_2351313_-	PRK14119, gpmA, phosphoglyceromutase; Provisional	NA|289aa|up_0|NZ_CP012978.1_2351639_2352506_-	COG0053, MMT1, Predicted Co/Zn/Cd cation transporters [Inorganic ion transport and metabolism]	NA|40aa|down_0|NZ_CP012978.1_2352921_2353041_-	NA	NA|438aa|down_1|NZ_CP012978.1_2353135_2354449_+	pfam11621, Sbi-IV, C3 binding domain 4 of IgG-bind protein SBI	NA|310aa|down_2|NZ_CP012978.1_2354984_2355914_+	pfam07968, Leukocidin, Leukocidin/Hemolysin toxin family	NA|316aa|down_3|NZ_CP012978.1_2356480_2357428_+	pfam07968, Leukocidin, Leukocidin/Hemolysin toxin family	NA|326aa|down_4|NZ_CP012978.1_2357429_2358407_+	TIGR01002, synergohymenotropic_toxin, beta-channel forming cytolysin	NA|156aa|down_5|NZ_CP012978.1_2358458_2358926_-	pfam06177, QueT, QueT transporter	NA|231aa|down_6|NZ_CP012978.1_2358936_2359629_-	COG1424, BioW, Pimeloyl-CoA synthetase [Coenzyme metabolism]	NA|372aa|down_7|NZ_CP012978.1_2359639_2360755_-	COG0156, BioF, 7-keto-8-aminopelargonate synthetase and related enzymes [Coenzyme metabolism]	NA|336aa|down_8|NZ_CP012978.1_2360732_2361740_-	PRK06256, PRK06256, biotin synthase; Validated	NA|453aa|down_9|NZ_CP012978.1_2361741_2363100_-	TIGR00508, hypothetical_protein_DESPIG_00326, adenosylmethionine-8-amino-7-oxononanoate transaminase
