The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP012978	Staphylococcus aureus strain ST20130941 chromosome, complete genome	2678881	708253	716073	2678881		Hokovirus(16.67%)	10	NA	NA
WP_000244415.1|708253_709309_-	two-component system sensor histidine kinase SaeS	NA	A0A1V0SGX0	Hokovirus	29.8	3.6e-14
WP_000149344.1|709308_709995_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_001037807.1|709969_710443_-	DoxX family protein	NA	NA	NA	NA	NA
WP_001093561.1|710784_711225_-	DM13 domain-containing protein	NA	NA	NA	NA	NA
WP_000637687.1|711504_712089_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001062972.1|712187_712901_-	7-carboxy-7-deazaguanine synthase QueE	NA	A0A1U9WRB6	Streptococcus_virus	43.5	6.5e-52
WP_000941336.1|712904_713324_-	6-carboxytetrahydropterin synthase QueD	NA	S4U060	uncultured_phage	28.7	6.3e-07
WP_000446724.1|713325_713994_-	7-cyano-7-deazaguanine synthase QueC	NA	A0A2H4J8Q7	uncultured_Caudovirales_phage	57.5	9.6e-66
WP_000604515.1|714344_714938_+	aminodeoxychorismate/anthranilate synthase component II	NA	A0A0P0IKJ1	Acinetobacter_phage	43.5	1.2e-38
WP_001217794.1|714921_716073_+	anthranilate synthase component I family protein	NA	S4VNU7	Pandoravirus	36.1	3.5e-23
>prophage 2
NZ_CP012978	Staphylococcus aureus strain ST20130941 chromosome, complete genome	2678881	728044	742718	2678881		uncultured_Caudovirales_phage(50.0%)	14	NA	NA
WP_000663026.1|728044_729103_+	histidinol-phosphate transaminase	NA	A0A0H3TLT9	Faustovirus	27.3	1.5e-20
WP_000197275.1|729453_729996_+	5'-3'-deoxyribonucleotidase	NA	NA	NA	NA	NA
WP_000429006.1|730674_731592_-	diacylglycerol kinase family lipid kinase	NA	A0A1V0SBJ0	Catovirus	22.0	2.1e-07
WP_031835073.1|731682_731784_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000193751.1|731861_733367_-	peptide MFS transporter	NA	A0A0P0IY73	Acinetobacter_phage	32.2	2.0e-58
WP_000930014.1|733707_734208_-	NADPH-dependent 7-cyano-7-deazaguanine reductase QueF	NA	E7DN65	Pneumococcus_phage	71.5	5.9e-52
WP_001068497.1|734227_735094_-	DMT family transporter	NA	NA	NA	NA	NA
WP_000692521.1|735894_736293_+	class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI	NA	A0A2H4J545	uncultured_Caudovirales_phage	72.0	1.2e-52
WP_000855505.1|736255_738361_+	class 1b ribonucleoside-diphosphate reductase subunit alpha	NA	A0A2H4J2N6	uncultured_Caudovirales_phage	91.7	0.0e+00
WP_000562498.1|738478_739450_+	class 1b ribonucleoside-diphosphate reductase subunit beta	NA	A0A2H4J4P3	uncultured_Caudovirales_phage	91.3	4.2e-171
WP_000499195.1|739851_740007_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000876318.1|740045_741017_+	ABC transporter permease	NA	A0A2H4IY97	uncultured_Caudovirales_phage	78.9	4.3e-139
WP_001245577.1|741003_741960_+	iron chelate uptake ABC transporter family permease subunit	NA	A0A2H4J116	uncultured_Caudovirales_phage	57.8	1.2e-05
WP_000616842.1|741956_742718_+	ABC transporter ATP-binding protein	NA	Q9EMR9	Amsacta_moorei_entomopoxvirus	31.6	8.5e-18
>prophage 3
NZ_CP012978	Staphylococcus aureus strain ST20130941 chromosome, complete genome	2678881	919101	960769	2678881	tRNA,bacteriocin,transposase,protease	Streptococcus_phage(40.0%)	37	NA	NA
WP_000448934.1|919101_920091_-|tRNA	tryptophan--tRNA ligase	tRNA	NA	NA	NA	NA
WP_000258003.1|920385_920781_+	transcriptional regulator Spx	NA	NA	NA	NA	NA
WP_000277718.1|920844_922491_-|transposase	IS1182 family transposase	transposase	A0ZS58	Staphylococcus_virus	97.4	7.2e-288
WP_001217728.1|923070_923790_+	adaptor protein MecA	NA	NA	NA	NA	NA
WP_000959289.1|923910_924897_+	competence protein CoiA	NA	NA	NA	NA	NA
WP_000082725.1|924944_926753_+	oligoendopeptidase F	NA	A0A1X9I5X5	Streptococcus_phage	24.5	5.5e-47
WP_000896697.1|927212_928019_-|protease	protease adaptor protein YjbH	protease	NA	NA	NA	NA
WP_000214069.1|928041_928407_-	truncated hemoglobin	NA	NA	NA	NA	NA
WP_000224619.1|928510_929104_-	CYTH domain-containing protein	NA	NA	NA	NA	NA
WP_001242102.1|929289_929637_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001077683.1|929653_930289_+	GTP pyrophosphokinase family protein	NA	NA	NA	NA	NA
WP_001270834.1|930305_931115_+	NAD kinase	NA	NA	NA	NA	NA
WP_000669923.1|931111_931966_+	RluA family pseudouridine synthase	NA	NA	NA	NA	NA
WP_000062407.1|931986_933372_+	magnesium transporter	NA	NA	NA	NA	NA
WP_000395152.1|933381_935226_+	monovalent cation:proton antiporter family protein	NA	NA	NA	NA	NA
WP_000933195.1|935503_936274_+	enoyl-ACP reductase FabI	NA	NA	NA	NA	NA
WP_000933105.1|936469_937555_-	AI-2E family transporter	NA	NA	NA	NA	NA
WP_000570700.1|937895_939464_+	alanine:cation symporter family protein	NA	NA	NA	NA	NA
WP_000889191.1|939608_940367_+	esterase family protein	NA	NA	NA	NA	NA
WP_000600387.1|940560_941070_+	YjcG family protein	NA	NA	NA	NA	NA
WP_001154224.1|941182_942373_-	MFS transporter	NA	NA	NA	NA	NA
WP_000258650.1|942350_943526_-	diglucosyl diacylglycerol synthase	NA	NA	NA	NA	NA
WP_000340119.1|943958_945443_+	UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L- lysine ligase	NA	NA	NA	NA	NA
WP_001795833.1|945423_945684_+	YueH family protein	NA	NA	NA	NA	NA
WP_001049951.1|945683_947246_+	peptide chain release factor 3	NA	A0A1S5SF82	Streptococcus_phage	28.2	1.7e-36
WP_000928413.1|947547_948351_+	TerC family protein	NA	S5MAL1	Bacillus_phage	40.5	1.6e-30
WP_000455278.1|948569_950894_+|protease	serine protease	protease	W5SAB9	Pithovirus	27.4	2.8e-11
WP_000021865.1|950910_952269_+	TrkH family potassium uptake protein	NA	NA	NA	NA	NA
WP_000414185.1|952407_953919_+	bifunctional metallophosphatase/5'-nucleotidase	NA	NA	NA	NA	NA
WP_000287265.1|954405_954975_-	competence protein ComK	NA	NA	NA	NA	NA
WP_000876826.1|955184_955403_+	IDEAL domain-containing protein	NA	NA	NA	NA	NA
WP_000668818.1|955483_956470_-	lipoate--protein ligase	NA	NA	NA	NA	NA
WP_000214898.1|956668_956845_+	YkvS family protein	NA	NA	NA	NA	NA
WP_001033865.1|956859_957462_+|protease	CPBP family intramembrane metalloprotease	protease	NA	NA	NA	NA
WP_031763719.1|958377_958479_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001797239.1|958488_958761_+|bacteriocin	lactococcin 972 family bacteriocin	bacteriocin	NA	NA	NA	NA
WP_000870832.1|958804_960769_+|bacteriocin	bacteriocin-associated integral membrane family protein	bacteriocin	NA	NA	NA	NA
>prophage 4
NZ_CP012978	Staphylococcus aureus strain ST20130941 chromosome, complete genome	2678881	994864	1003337	2678881		Synechococcus_phage(33.33%)	9	NA	NA
WP_000861572.1|994864_995347_+	5-(carboxyamino)imidazole ribonucleotide mutase	NA	A0A2P0VNU7	Tetraselmis_virus	44.7	6.2e-22
WP_001010414.1|995333_996458_+	5-(carboxyamino)imidazole ribonucleotide synthase	NA	NA	NA	NA	NA
WP_000174044.1|996461_997166_+	phosphoribosylaminoimidazolesuccinocarboxamide synthase	NA	M4R1E8	Synechococcus_phage	41.6	8.1e-47
WP_000848350.1|997165_997429_+	phosphoribosylformylglycinamidine synthase subunit PurS	NA	NA	NA	NA	NA
WP_000666806.1|997430_998102_+	phosphoribosylformylglycinamidine synthase I	NA	NA	NA	NA	NA
WP_000032733.1|998094_1000284_+	phosphoribosylformylglycinamidine synthase subunit PurL	NA	A6N228	Microbacterium_phage	39.8	2.7e-141
WP_000483713.1|1000262_1001747_+	amidophosphoribosyltransferase	NA	A0A0M3SGR2	Mollivirus	31.7	3.2e-45
WP_000030811.1|1001739_1002768_+	phosphoribosylformylglycinamidine cyclo-ligase	NA	Q58MH8	Prochlorococcus_phage	41.7	3.4e-62
WP_000238675.1|1002770_1003337_+	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	40.7	7.2e-30
>prophage 5
NZ_CP012978	Staphylococcus aureus strain ST20130941 chromosome, complete genome	2678881	1540782	1549112	2678881	tRNA	Staphylococcus_phage(16.67%)	7	NA	NA
WP_001213908.1|1540782_1541568_-	metal ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	28.3	8.0e-19
WP_000924220.1|1541693_1542584_-	deoxyribonuclease IV	NA	A0A2H4UU70	Bodo_saltans_virus	36.0	3.4e-26
WP_001062183.1|1542593_1543940_-	DEAD/DEAH box helicase	NA	A0A1V0SIR5	Klosneuvirus	34.0	1.8e-55
WP_000683933.1|1544053_1545154_-	Nif3-like dinuclear metal center hexameric protein	NA	A0A1S5V250	Saudi_moumouvirus	29.6	5.2e-08
WP_000624583.1|1545156_1545834_-|tRNA	tRNA (adenine-N(1))-methyltransferase	tRNA	NA	NA	NA	NA
WP_001283055.1|1545964_1547071_-	RNA polymerase sigma factor RpoD	NA	A0A2I7SAT0	Vibrio_phage	38.1	1.1e-37
WP_001217252.1|1547294_1549112_-	DNA primase	NA	A0A0K1LMQ9	Caulobacter_phage	36.0	3.6e-54
>prophage 6
NZ_CP012978	Staphylococcus aureus strain ST20130941 chromosome, complete genome	2678881	1616968	1626011	2678881	tRNA	uncultured_Mediterranean_phage(50.0%)	7	NA	NA
WP_000364542.1|1616968_1617487_-	adenine phosphoribosyltransferase	NA	A0A1V0SKE5	Klosneuvirus	46.5	5.6e-29
WP_000594993.1|1617508_1619782_-	single-stranded-DNA-specific exonuclease RecJ	NA	A7KV88	Bacillus_phage	28.8	1.2e-62
WP_000749789.1|1619984_1622264_-	protein translocase subunit SecDF	NA	A0A1B1IVP7	uncultured_Mediterranean_phage	35.8	1.8e-31
WP_001160682.1|1622538_1622799_-	preprotein translocase subunit YajC	NA	A0A1B1IVR5	uncultured_Mediterranean_phage	35.3	8.2e-05
WP_001112045.1|1622817_1623957_-|tRNA	tRNA guanosine(34) transglycosylase Tgt	tRNA	A0A1B1IVQ4	uncultured_Mediterranean_phage	44.7	5.4e-85
WP_001019172.1|1623979_1625005_-|tRNA	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	tRNA	NA	NA	NA	NA
WP_062909943.1|1625006_1626011_-	Holliday junction branch migration DNA helicase RuvB	NA	B3GAM6	uncultured_virus	29.1	1.7e-05
>prophage 7
NZ_CP012978	Staphylococcus aureus strain ST20130941 chromosome, complete genome	2678881	1750524	1817007	2678881	tRNA,protease	Staphylococcus_phage(95.65%)	64	NA	NA
WP_001641584.1|1750524_1757085_-	LPXTG-anchored repetitive surface protein SasC	NA	A0A2H4PQU6	Staphylococcus_phage	97.1	1.3e-300
WP_000836465.1|1757410_1757722_-	rhodanese-like domain-containing protein	NA	A0A2H4PQR9	Staphylococcus_phage	100.0	1.6e-52
WP_001557386.1|1757743_1760161_-|tRNA	leucine--tRNA ligase	tRNA	A0A2H4PQS0	Staphylococcus_phage	99.5	0.0e+00
WP_001025061.1|1760448_1761630_-	MFS transporter	NA	A0A2H4PQR6	Staphylococcus_phage	100.0	5.6e-218
WP_000526539.1|1761739_1762693_+	TIGR01212 family radical SAM protein	NA	A0A2H4PQV5	Staphylococcus_phage	100.0	2.2e-79
WP_000764419.1|1762689_1763253_+	class I SAM-dependent methyltransferase	NA	A0A2H4PQV0	Staphylococcus_phage	99.5	8.3e-103
WP_000757543.1|1763372_1763774_-	MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_000266096.1|1764345_1765173_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_001790712.1|1765175_1765295_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001196360.1|1765406_1766408_+	proline dehydrogenase	NA	A0A2H4PQT6	Staphylococcus_phage	99.1	7.7e-184
WP_001008551.1|1766529_1766994_-	6,7-dimethyl-8-ribityllumazine synthase	NA	A0A2H4PQS3	Staphylococcus_phage	99.4	5.8e-70
WP_001175484.1|1767006_1768188_-	bifunctional 3,4-dihydroxy-2-butanone-4-phosphate synthase/GTP cyclohydrolase II	NA	A0A2H4PQS2	Staphylococcus_phage	99.7	1.5e-226
WP_000493886.1|1768198_1768831_-	riboflavin synthase	NA	A0A2H4PQS5	Staphylococcus_phage	99.0	6.4e-112
WP_000077344.1|1768837_1769881_-	bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD	NA	A0A2H4PQS8	Staphylococcus_phage	99.4	6.3e-197
WP_001261679.1|1770361_1771864_-	FAD/NAD(P)-binding protein	NA	A0A2H4PQX2	Staphylococcus_phage	100.0	2.3e-30
WP_000221179.1|1772386_1772701_+	winged helix-turn-helix transcriptional regulator	NA	A0A2H4PQT4	Staphylococcus_phage	100.0	2.0e-53
WP_000989121.1|1772700_1773993_+	arsenite efflux transporter membrane subunit ArsB	NA	A0A2H4PQU3	Staphylococcus_phage	99.5	5.0e-228
WP_000163236.1|1774010_1774406_+	arsenate reductase (thioredoxin)	NA	A0A2H4PQT9	Staphylococcus_phage	99.2	3.1e-72
WP_001032833.1|1774700_1775555_-	glucosaminidase domain-containing protein	NA	Q4ZCC7	Staphylococcus_virus	38.6	9.8e-39
WP_062909948.1|1775830_1776055_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000671057.1|1776253_1776724_+	RNA polymerase sigma factor SigS	NA	A0A2H4PQT5	Staphylococcus_phage	98.1	8.8e-82
WP_001153745.1|1776836_1777280_+	competence protein ComK	NA	NA	NA	NA	NA
WP_001030469.1|1777266_1777710_-	hypothetical protein	NA	A0A2H4PQT8	Staphylococcus_phage	98.6	2.4e-57
WP_001168904.1|1778005_1778641_+|protease	CPBP family intramembrane metalloprotease SdpA	protease	NA	NA	NA	NA
WP_001096494.1|1779080_1779794_-	transaldolase	NA	M1PR54	Cyanophage	35.3	5.5e-19
WP_000091445.1|1780053_1780356_+	hypothetical protein	NA	NA	NA	NA	NA
WP_062909949.1|1780611_1780977_+	fluoride efflux transporter CrcB	NA	A0A2H4PQR0	Staphylococcus_phage	99.2	2.4e-58
WP_000623471.1|1780973_1781327_+	CrcB family protein	NA	A0A2H4PQQ7	Staphylococcus_phage	99.1	1.0e-21
WP_000453317.1|1783421_1784255_-	aldo/keto reductase	NA	A0A2H4PQR8	Staphylococcus_phage	99.6	3.5e-158
WP_062909952.1|1784466_1785375_-	NERD domain-containing protein	NA	A0A2H4PQQ8	Staphylococcus_phage	98.7	8.3e-137
WP_000933822.1|1785499_1786693_-	methionine adenosyltransferase	NA	A0A2H4PQS6	Staphylococcus_phage	99.7	1.9e-218
WP_000109906.1|1787064_1788657_+	phosphoenolpyruvate carboxykinase (ATP)	NA	A0A2H4PQN1	Staphylococcus_phage	100.0	0.0e+00
WP_001834463.1|1789034_1789781_-	S9 family peptidase	NA	A0A2H4PQM6	Staphylococcus_phage	98.8	1.4e-142
WP_000672015.1|1789785_1790259_-	nucleoside triphosphatase YtkD	NA	A0A2H4PQM4	Staphylococcus_phage	99.4	5.5e-84
WP_000718107.1|1790324_1790582_+	membrane protein insertion efficiency factor YidD	NA	A0A2H4PQM5	Staphylococcus_phage	100.0	7.2e-46
WP_000778538.1|1790578_1791580_-	o-succinylbenzoate synthase	NA	A0A2H4PQM0	Staphylococcus_phage	97.0	9.0e-185
WP_062909953.1|1791584_1793063_-	o-succinylbenzoate--CoA ligase	NA	A0A2H4PQM9	Staphylococcus_phage	97.4	5.3e-282
WP_072414246.1|1793221_1793677_-	DUF4909 domain-containing protein	NA	A0A2H4PQN7	Staphylococcus_phage	98.6	1.5e-78
WP_001795535.1|1793979_1794630_+	excalibur calcium-binding domain-containing protein	NA	A0A2H4PQM8	Staphylococcus_phage	88.4	2.7e-44
WP_000070655.1|1794710_1795706_+	DUF4352 domain-containing protein	NA	A0A2H4PQN2	Staphylococcus_phage	98.8	6.2e-77
WP_000669027.1|1795781_1796408_+	hypothetical protein	NA	A0A2H4PQM7	Staphylococcus_phage	93.8	5.3e-90
WP_000627537.1|1796448_1796790_+	DUF3969 family protein	NA	A0A2H4PQN6	Staphylococcus_phage	95.6	3.0e-55
WP_000414214.1|1796890_1797463_+	hypothetical protein	NA	A0A2H4PQN4	Staphylococcus_phage	96.6	1.1e-25
WP_000864136.1|1797660_1798218_-	ImmA/IrrE family metallo-endopeptidase	NA	A0A2H4PQN8	Staphylococcus_phage	96.8	3.7e-79
WP_000375476.1|1798588_1798765_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000731412.1|1799872_1800316_-	DUF1433 domain-containing protein	NA	NA	NA	NA	NA
WP_000731418.1|1800315_1800759_-	DUF1433 domain-containing protein	NA	NA	NA	NA	NA
WP_000745473.1|1800758_1801202_-	DUF1433 domain-containing protein	NA	NA	NA	NA	NA
WP_000221410.1|1801740_1804164_+	polysaccharide lyase 8 family protein	NA	NA	NA	NA	NA
WP_001036003.1|1804287_1804665_-	DUF1433 domain-containing protein	NA	NA	NA	NA	NA
WP_000759947.1|1804870_1805311_-	DUF1433 domain-containing protein	NA	NA	NA	NA	NA
WP_000926706.1|1805355_1806969_+	lipase	NA	NA	NA	NA	NA
WP_000095395.1|1806983_1807283_+	WXG100 family type VII secretion target	NA	NA	NA	NA	NA
WP_000072556.1|1807409_1808645_-	restriction endonuclease subunit S	NA	A0A2H4PQP5	Staphylococcus_phage	37.2	6.4e-47
WP_000028609.1|1808637_1810194_-	type I restriction-modification system subunit M	NA	A0A2H4PQP4	Staphylococcus_phage	99.0	1.5e-287
WP_031835054.1|1810357_1810492_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001038693.1|1810558_1811278_-|protease	serine protease SplF	protease	A0A2H4PQP1	Staphylococcus_phage	99.2	1.2e-130
WP_001038760.1|1811428_1812145_-|protease	serine protease SplE	protease	A0A2H4PQN5	Staphylococcus_phage	99.6	3.2e-131
WP_103150108.1|1812246_1812354_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001038723.1|1812302_1813022_-|protease	serine protease SplD	protease	A0A2H4PQP9	Staphylococcus_phage	97.9	4.3e-128
WP_001038866.1|1813142_1813862_-|protease	serine protease SplC	protease	A0A2H4PQP7	Staphylococcus_phage	98.7	3.5e-130
WP_001039455.1|1813919_1814642_-|protease	serine protease SplB	protease	A0A2H4PQN0	Staphylococcus_phage	99.2	1.2e-130
WP_025174851.1|1814766_1815474_-|protease	serine protease SplA	protease	A0A2H4PQN3	Staphylococcus_phage	95.7	2.4e-123
WP_001092783.1|1816437_1817007_+	DUF4888 domain-containing protein	NA	A0A2H4PQH6	Staphylococcus_phage	62.6	2.6e-51
>prophage 8
NZ_CP012978	Staphylococcus aureus strain ST20130941 chromosome, complete genome	2678881	1947982	1953661	2678881		Staphylococcus_phage(100.0%)	6	NA	NA
WP_000669789.1|1947982_1948162_+	hypothetical protein	NA	A0A1W6JQ29	Staphylococcus_phage	100.0	2.2e-25
WP_001791826.1|1948472_1948733_+	hypothetical protein	NA	M9NS66	Staphylococcus_phage	100.0	2.3e-23
WP_000702262.1|1948785_1949136_-	complement inhibitor SCIN-A	NA	A7TWS0	Staphylococcus_phage	100.0	7.5e-54
WP_000727643.1|1949818_1950268_+	chemotaxis-inhibiting protein CHIPS	NA	A7TWR9	Staphylococcus_phage	100.0	1.5e-78
WP_000595392.1|1951567_1952584_-	bi-component leukocidin LukGH subunit G	NA	A0A1X9IGW5	Staphylococcus_phage	30.2	6.7e-26
WP_000791411.1|1952605_1953661_-	bi-component leukocidin LukGH subunit H	NA	A0A1X9IGW5	Staphylococcus_phage	34.3	2.8e-35
