assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_001611035.1_ASM161103v1	NZ_CP012269	Pediococcus damnosus strain TMW 2.1532 chromosome, complete genome	1	362321-362469	1	CRISPRCasFinder	no		RT,csa3,DEDDh,cas3,csn2,cas2,cas1,cas9,WYL,DinG	Orphan	CGGATGTCCATCCGTTATAACCGCTAAAGCGCTAAGCCGGACTGGCTCCT	50	0	0	NA	NA	NA	1	1	Orphan	RT,csa3,DEDDh,cas3,csn2,cas2,cas1,cas9,WYL,DinG	NA,NA	NA|142aa|up_9|NZ_CP012269.1_354271_354697_-	PRK00140, rplK, 50S ribosomal protein L11; Validated	NA|183aa|up_8|NZ_CP012269.1_354853_355402_-	PRK05609, nusG, transcription antitermination protein NusG; Validated	NA|56aa|up_7|NZ_CP012269.1_355545_355713_-	PRK07597, secE, preprotein translocase subunit SecE; Reviewed	NA|50aa|up_6|NZ_CP012269.1_355726_355876_-	PRK00504, rpmG, 50S ribosomal protein L33; Validated	NA|199aa|up_5|NZ_CP012269.1_355999_356596_-	PRK08295, PRK08295, RNA polymerase sporulation sigma factor SigH	NA|263aa|up_4|NZ_CP012269.1_356743_357532_-	TIGR00186, Uncharacterized_tRNA/rRNA_methyltransferase_MG252, rRNA methylase, putative, group 3	NA|140aa|up_3|NZ_CP012269.1_357518_357938_-	COG1939, COG1939, Ribonuclease III family protein [Replication, recombination, and    repair]	NA|469aa|up_2|NZ_CP012269.1_357941_359348_-	PRK00260, cysS, cysteinyl-tRNA synthetase; Validated	NA|496aa|up_1|NZ_CP012269.1_359507_360995_-	PRK01406, gltX, glutamyl-tRNA synthetase; Reviewed	NA|381aa|up_0|NZ_CP012269.1_361117_362260_-	COG4956, COG4956, Integral membrane protein (PIN domain superfamily) [General function prediction only]	NA|457aa|down_0|NZ_CP012269.1_362604_363975_-	PRK11823, PRK11823, DNA repair protein RadA; Provisional	NA|179aa|down_1|NZ_CP012269.1_364061_364598_-	PRK13956, dut, dUTP diphosphatase	NA|115aa|down_2|NZ_CP012269.1_364789_365134_+	pfam14542, Acetyltransf_CG, GCN5-related N-acetyl-transferase	NA|229aa|down_3|NZ_CP012269.1_365120_365807_+	PRK00702, PRK00702, ribose-5-phosphate isomerase RpiA	NA|461aa|down_4|NZ_CP012269.1_365860_367243_+	cd00585, Peptidase_C1B, Peptidase C1B subfamily (MEROPS database nomenclature); composed of eukaryotic bleomycin hydrolases (BH) and bacterial aminopeptidases C (pepC)	NA|348aa|down_5|NZ_CP012269.1_368540_369584_-	COG0697, RhaT, Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]	NA|318aa|down_6|NZ_CP012269.1_369673_370627_-	COG0679, COG0679, Predicted permeases [General function prediction only]	NA|362aa|down_7|NZ_CP012269.1_370808_371894_+	PRK09379, PRK09379, LytR family transcriptional regulator	NA|260aa|down_8|NZ_CP012269.1_371943_372723_-	COG0825, AccA, Acetyl-CoA carboxylase alpha subunit [Lipid metabolism]	NA|266aa|down_9|NZ_CP012269.1_372715_373513_-	PRK05654, PRK05654, acetyl-CoA carboxylase carboxyltransferase subunit beta
GCF_001611035.1_ASM161103v1	NZ_CP012269	Pediococcus damnosus strain TMW 2.1532 chromosome, complete genome	2	645297-645729	2,1,1	CRISPRCasFinder,CRT,PILER-CR	no	csn2,cas2,cas1,cas9	RT,csa3,DEDDh,cas3,csn2,cas2,cas1,cas9,WYL,DinG	Type II-C,Type II-A,Type II-B	GCTCTTAACTATATTGATTCGACACTCTTCTAAAAC,GCTCTTAACTATATTGATTCGACACTCTTCTAAAAC,CGGGCTCTTAACTATATTGATTCGACACTCTTCTAAAAC	36,36,39	0	0	NA	NA	NA:NA:NA	6,6,3	6	TypeII-C,TypeII-A,TypeII-B	RT,csa3,DEDDh,cas3,csn2,cas2,cas1,cas9,WYL,DinG	NA,NA|82aa|down_7|NZ_CP012269.1_654784_655030_+	NA|583aa|up_9|NZ_CP012269.1_633490_635239_-	TIGR02720, Pyruvate_oxidase, pyruvate oxidase	NA|457aa|up_8|NZ_CP012269.1_635815_637186_-	PRK00701, PRK00701, divalent metal cation transporter MntH	NA|154aa|up_7|NZ_CP012269.1_637229_637691_-	cd00293, USP_Like, Usp: Universal stress protein family	NA|448aa|up_6|NZ_CP012269.1_637912_639256_-	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily	NA|187aa|up_5|NZ_CP012269.1_639578_640139_-	COG0163, UbiX family flavin prenyltransferase [Coenzyme transport and metabolism]	NA|492aa|up_4|NZ_CP012269.1_640161_641637_-	pfam01977, UbiD, 3-octaprenyl-4-hydroxybenzoate carboxy-lyase	NA|304aa|up_3|NZ_CP012269.1_641784_642696_+	COG0583, LysR, Transcriptional regulator [Transcription]	NA|272aa|up_2|NZ_CP012269.1_643183_643999_-	pfam06912, DUF1275, Protein of unknown function (DUF1275)	NA|158aa|up_1|NZ_CP012269.1_644139_644613_-	pfam02464, CinA, Competence-damaged protein	NA|154aa|up_0|NZ_CP012269.1_644705_645167_-	COG2153, ElaA, Predicted acyltransferase [General function prediction only]	NA|86aa|down_0|NZ_CP012269.1_645817_646075_+	COG2963, COG2963, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|295aa|down_1|NZ_CP012269.1_646059_646944_+	PHA02517, PHA02517, putative transposase OrfB; Reviewed	csn2|202aa|down_2|NZ_CP012269.1_647721_648327_-	cd12218, Csn2, CRISPR/Cas system-associated protein Csn2	cas2|102aa|down_3|NZ_CP012269.1_648323_648629_-	COG3512, COG3512, CRISPR-associated protein, Cas2 homolog [Defense mechanisms]	cas1|301aa|down_4|NZ_CP012269.1_648606_649509_-	cd09720, Cas1_II, CRISPR/Cas system-associated protein Cas1	cas9|1379aa|down_5|NZ_CP012269.1_649725_653862_-	pfam16592, Cas9_REC, REC lobe of CRISPR-associated endonuclease Cas9	NA|171aa|down_6|NZ_CP012269.1_654056_654569_+	cd00865, PEBP_bact_arch, PhosphatidylEthanolamine-Binding Protein (PEBP) domain present in bacteria and archaea	NA|82aa|down_7|NZ_CP012269.1_654784_655030_+	NA	NA|161aa|down_8|NZ_CP012269.1_655087_655570_-	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein	NA|334aa|down_9|NZ_CP012269.1_655687_656689_+	COG0604, Qor, NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only]
GCF_001611035.1_ASM161103v1	NZ_CP012269	Pediococcus damnosus strain TMW 2.1532 chromosome, complete genome	3	646994-647624	2,3,2	PILER-CR,CRISPRCasFinder,CRT	no	csn2,cas2,cas1,cas9	RT,csa3,DEDDh,cas3,csn2,cas2,cas1,cas9,WYL,DinG	Type II-C,Type II-A,Type II-B	GCTCTTAACTATATTGATTCGACACTCTTCTAAAAC,GCTCTTAACTATATTGATTCGACACTCTTCTAAAAC,GCTCTTAACTATATTGATTCGACACTCTTCTAAAAC	36,36,36	0	0	NA	NA	NA:NA:NA	9,9,9	9	TypeII-C,TypeII-A,TypeII-B	RT,csa3,DEDDh,cas3,csn2,cas2,cas1,cas9,WYL,DinG	NA,NA|82aa|down_5|NZ_CP012269.1_654784_655030_+	NA|154aa|up_9|NZ_CP012269.1_637229_637691_-	cd00293, USP_Like, Usp: Universal stress protein family	NA|448aa|up_8|NZ_CP012269.1_637912_639256_-	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily	NA|187aa|up_7|NZ_CP012269.1_639578_640139_-	COG0163, UbiX family flavin prenyltransferase [Coenzyme transport and metabolism]	NA|492aa|up_6|NZ_CP012269.1_640161_641637_-	pfam01977, UbiD, 3-octaprenyl-4-hydroxybenzoate carboxy-lyase	NA|304aa|up_5|NZ_CP012269.1_641784_642696_+	COG0583, LysR, Transcriptional regulator [Transcription]	NA|272aa|up_4|NZ_CP012269.1_643183_643999_-	pfam06912, DUF1275, Protein of unknown function (DUF1275)	NA|158aa|up_3|NZ_CP012269.1_644139_644613_-	pfam02464, CinA, Competence-damaged protein	NA|154aa|up_2|NZ_CP012269.1_644705_645167_-	COG2153, ElaA, Predicted acyltransferase [General function prediction only]	NA|86aa|up_1|NZ_CP012269.1_645817_646075_+	COG2963, COG2963, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|295aa|up_0|NZ_CP012269.1_646059_646944_+	PHA02517, PHA02517, putative transposase OrfB; Reviewed	csn2|202aa|down_0|NZ_CP012269.1_647721_648327_-	cd12218, Csn2, CRISPR/Cas system-associated protein Csn2	cas2|102aa|down_1|NZ_CP012269.1_648323_648629_-	COG3512, COG3512, CRISPR-associated protein, Cas2 homolog [Defense mechanisms]	cas1|301aa|down_2|NZ_CP012269.1_648606_649509_-	cd09720, Cas1_II, CRISPR/Cas system-associated protein Cas1	cas9|1379aa|down_3|NZ_CP012269.1_649725_653862_-	pfam16592, Cas9_REC, REC lobe of CRISPR-associated endonuclease Cas9	NA|171aa|down_4|NZ_CP012269.1_654056_654569_+	cd00865, PEBP_bact_arch, PhosphatidylEthanolamine-Binding Protein (PEBP) domain present in bacteria and archaea	NA|82aa|down_5|NZ_CP012269.1_654784_655030_+	NA	NA|161aa|down_6|NZ_CP012269.1_655087_655570_-	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein	NA|334aa|down_7|NZ_CP012269.1_655687_656689_+	COG0604, Qor, NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only]	NA|168aa|down_8|NZ_CP012269.1_657041_657545_+	PRK00226, greA, transcription elongation factor GreA; Reviewed	NA|283aa|down_9|NZ_CP012269.1_657601_658450_-	cd19071, AKR_AKR1-5-like, AKR1/2/3/4/5 family of aldo-keto reductase (AKR) and similar proteins
GCF_001611035.1_ASM161103v1	NZ_CP012269	Pediococcus damnosus strain TMW 2.1532 chromosome, complete genome	4	986139-986364	3	PILER-CR	no		RT,csa3,DEDDh,cas3,csn2,cas2,cas1,cas9,WYL,DinG	Orphan	AGGCAAAGACGGGCGCATGCGGGATCGCAATCCCGCG	37	0	0	NA	NA	NA	2	2	Orphan	RT,csa3,DEDDh,cas3,csn2,cas2,cas1,cas9,WYL,DinG	NA|199aa|up_8|NZ_CP012269.1_975933_976530_+,NA|179aa|up_7|NZ_CP012269.1_976811_977348_+,NA|53aa|down_0|NZ_CP012269.1_986524_986683_+,NA|69aa|down_1|NZ_CP012269.1_986865_987072_+,NA|72aa|down_6|NZ_CP012269.1_991003_991219_+,NA|112aa|down_7|NZ_CP012269.1_991328_991664_+	NA|302aa|up_9|NZ_CP012269.1_974768_975674_+	TIGR00950, Uncharacterized_inner_membrane_transporter_YicL, Carboxylate/Amino Acid/Amine Transporter	NA|199aa|up_8|NZ_CP012269.1_975933_976530_+	NA	NA|179aa|up_7|NZ_CP012269.1_976811_977348_+	NA	NA|551aa|up_6|NZ_CP012269.1_977933_979586_-	TIGR02403, Trehalose-6-phosphate_hydrolase, alpha,alpha-phosphotrehalase	NA|239aa|up_5|NZ_CP012269.1_979598_980315_-	TIGR02404, Trehalose_operon_transcriptional_repressor, trehalose operon repressor, B	NA|165aa|up_4|NZ_CP012269.1_980542_981037_+	pfam00358, PTS_EIIA_1, phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1	NA|506aa|up_3|NZ_CP012269.1_981055_982573_+	TIGR01995, beta-glucosides_PTS_EIIBCA, PTS system, beta-glucoside-specific IIABC component	NA|186aa|up_2|NZ_CP012269.1_982997_983555_+	PRK13661, PRK13661, ECF-type riboflavin transporter substrate-binding protein	NA|570aa|up_1|NZ_CP012269.1_983559_985269_+	cd03225, ABC_cobalt_CbiO_domain1, First domain of the ATP-binding cassette component of cobalt transport system	NA|278aa|up_0|NZ_CP012269.1_985261_986095_+	COG0619, CbiQ, ABC-type cobalt transport system, permease component CbiQ and related transporters [Inorganic ion transport and metabolism]	NA|53aa|down_0|NZ_CP012269.1_986524_986683_+	NA	NA|69aa|down_1|NZ_CP012269.1_986865_987072_+	NA	NA|78aa|down_2|NZ_CP012269.1_987132_987366_+	pfam11148, DUF2922, Protein of unknown function (DUF2922)	NA|297aa|down_3|NZ_CP012269.1_987529_988420_+	COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms]	NA|256aa|down_4|NZ_CP012269.1_988421_989189_+	pfam12730, ABC2_membrane_4, ABC-2 family transporter protein	NA|408aa|down_5|NZ_CP012269.1_989218_990442_-	cd06173, MFS_MefA_like, Macrolide efflux protein A and similar proteins of the Major Facilitator Superfamily of transporters	NA|72aa|down_6|NZ_CP012269.1_991003_991219_+	NA	NA|112aa|down_7|NZ_CP012269.1_991328_991664_+	NA	NA|374aa|down_8|NZ_CP012269.1_991656_992778_+	COG1194, MutY, A/G-specific DNA glycosylase [DNA replication, recombination, and repair]	NA|231aa|down_9|NZ_CP012269.1_992794_993487_+	pfam02525, Flavodoxin_2, Flavodoxin-like fold
GCF_001611035.1_ASM161103v1	NZ_CP012269	Pediococcus damnosus strain TMW 2.1532 chromosome, complete genome	5	1172446-1172585	4	CRISPRCasFinder	no		RT,csa3,DEDDh,cas3,csn2,cas2,cas1,cas9,WYL,DinG	Orphan	CCTCCTCGATTTTTAAATGACTATTTTGCATACGCAAAATC	41	0	0	NA	NA	NA	1	1	Orphan	RT,csa3,DEDDh,cas3,csn2,cas2,cas1,cas9,WYL,DinG	NA|84aa|up_8|NZ_CP012269.1_1164157_1164409_-,NA|61aa|up_7|NZ_CP012269.1_1164806_1164989_+,NA|389aa|up_2|NZ_CP012269.1_1168792_1169959_+,NA|108aa|down_5|NZ_CP012269.1_1180039_1180363_+,NA|361aa|down_7|NZ_CP012269.1_1181505_1182588_+	NA|438aa|up_9|NZ_CP012269.1_1162644_1163958_+	COG2252, COG2252, Xanthine/uracil/vitamin C permease [Nucleotide transport and    metabolism]	NA|84aa|up_8|NZ_CP012269.1_1164157_1164409_-	NA	NA|61aa|up_7|NZ_CP012269.1_1164806_1164989_+	NA	NA|289aa|up_6|NZ_CP012269.1_1165130_1165997_+	cd09278, RNase_HI_prokaryote_like, RNase HI family found mainly in prokaryotes	NA|176aa|up_5|NZ_CP012269.1_1166006_1166534_-	pfam13302, Acetyltransf_3, Acetyltransferase (GNAT) domain	NA|127aa|up_4|NZ_CP012269.1_1167061_1167442_+	pfam01521, Fe-S_biosyn, Iron-sulphur cluster biosynthesis	NA|398aa|up_3|NZ_CP012269.1_1167587_1168781_+	cd06173, MFS_MefA_like, Macrolide efflux protein A and similar proteins of the Major Facilitator Superfamily of transporters	NA|389aa|up_2|NZ_CP012269.1_1168792_1169959_+	NA	NA|167aa|up_1|NZ_CP012269.1_1169971_1170472_+	cd02908, Macro_OAADPr_deacetylase, macrodomain, O-acetyl-ADP-ribose (OAADPr) family	NA|456aa|up_0|NZ_CP012269.1_1170953_1172321_+	pfam06782, UPF0236, Uncharacterized protein family (UPF0236)	NA|227aa|down_0|NZ_CP012269.1_1172817_1173498_+	TIGR02254, hydrolase_haloacid_dehalogenase-like_family, noncanonical pyrimidine nucleotidase, YjjG family	NA|151aa|down_1|NZ_CP012269.1_1173680_1174133_+	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein	NA|579aa|down_2|NZ_CP012269.1_1174132_1175869_+	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]	NA|632aa|down_3|NZ_CP012269.1_1175855_1177751_+	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]	NA|402aa|down_4|NZ_CP012269.1_1178358_1179564_-	pfam01548, DEDD_Tnp_IS110, Transposase	NA|108aa|down_5|NZ_CP012269.1_1180039_1180363_+	NA	NA|273aa|down_6|NZ_CP012269.1_1180379_1181198_+	COG0561, Cof, Predicted hydrolases of the HAD superfamily [General function prediction only]	NA|361aa|down_7|NZ_CP012269.1_1181505_1182588_+	NA	NA|186aa|down_8|NZ_CP012269.1_1183041_1183599_+	pfam16729, DUF5067, Domain of unknown function (DUF5067)	NA|131aa|down_9|NZ_CP012269.1_1183791_1184184_-	pfam15919, HicB_lk_antitox, HicB_like antitoxin of bacterial toxin-antitoxin system
GCF_001611035.1_ASM161103v1	NZ_CP012269	Pediococcus damnosus strain TMW 2.1532 chromosome, complete genome	6	1256903-1257053	5	CRISPRCasFinder	no		RT,csa3,DEDDh,cas3,csn2,cas2,cas1,cas9,WYL,DinG	Orphan	ATCCCGCGGGAAGGATAGTTATATTTTGACTTTTGCTTTGTCGAGCCGTCCTCA	54	0	0	NA	NA	NA	1	1	Orphan	RT,csa3,DEDDh,cas3,csn2,cas2,cas1,cas9,WYL,DinG	NA|86aa|up_9|NZ_CP012269.1_1248928_1249186_-,NA|128aa|down_1|NZ_CP012269.1_1261567_1261951_+,NA|112aa|down_7|NZ_CP012269.1_1266462_1266798_-	NA|86aa|up_9|NZ_CP012269.1_1248928_1249186_-	NA	NA|137aa|up_8|NZ_CP012269.1_1249660_1250071_+	PRK01655, spxA, transcriptional regulator Spx; Reviewed	NA|95aa|up_7|NZ_CP012269.1_1250164_1250449_-	COG1073, COG1073, Hydrolases of the alpha/beta superfamily [General function prediction only]	NA|416aa|up_6|NZ_CP012269.1_1250500_1251748_+	COG3464, COG3464, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|278aa|up_5|NZ_CP012269.1_1251733_1252567_-	pfam12146, Hydrolase_4, Serine aminopeptidase, S33	NA|264aa|up_4|NZ_CP012269.1_1252597_1253389_-	pfam13350, Y_phosphatase3, Tyrosine phosphatase family	NA|219aa|up_3|NZ_CP012269.1_1253474_1254131_-	COG2364, COG2364, Predicted membrane protein [Function unknown]	NA|287aa|up_2|NZ_CP012269.1_1254467_1255328_+	cd19071, AKR_AKR1-5-like, AKR1/2/3/4/5 family of aldo-keto reductase (AKR) and similar proteins	NA|160aa|up_1|NZ_CP012269.1_1255390_1255870_-	PRK02551, PRK02551, flavoprotein NrdI; Provisional	NA|264aa|up_0|NZ_CP012269.1_1256056_1256848_+	COG0561, Cof, Predicted hydrolases of the HAD superfamily [General function prediction only]	NA|462aa|down_0|NZ_CP012269.1_1257121_1258507_-	COG1253, TlyC, Hemolysins and related proteins containing CBS domains [General function prediction only]	NA|128aa|down_1|NZ_CP012269.1_1261567_1261951_+	NA	NA|143aa|down_2|NZ_CP012269.1_1262194_1262623_+	cd06471, ACD_LpsHSP_like, Group of bacterial proteins containing an alpha crystallin domain (ACD) similar to Lactobacillus plantarum (Lp) small heat shock proteins (sHsp) HSP 18	NA|177aa|down_3|NZ_CP012269.1_1262683_1263214_-	pfam13302, Acetyltransf_3, Acetyltransferase (GNAT) domain	NA|358aa|down_4|NZ_CP012269.1_1263311_1264385_-	COG2826, Tra8, Transposase and inactivated derivatives, IS30 family [DNA replication, recombination, and repair]	NA|326aa|down_5|NZ_CP012269.1_1264738_1265716_+	cd19092, AKR_BsYcsN_EcYdhF-like, Bacillus subtilis YcsN, Escherichia coli YdhF and similar proteins	NA|189aa|down_6|NZ_CP012269.1_1265886_1266453_-	pfam16729, DUF5067, Domain of unknown function (DUF5067)	NA|112aa|down_7|NZ_CP012269.1_1266462_1266798_-	NA	NA|179aa|down_8|NZ_CP012269.1_1266949_1267486_+	pfam08876, DUF1836, Domain of unknown function (DUF1836)	NA|467aa|down_9|NZ_CP012269.1_1267975_1269376_+	PRK13805, PRK13805, bifunctional acetaldehyde-CoA/alcohol dehydrogenase; Provisional
