assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_001606315.1_ASM160631v1	NZ_CP014956	Mycobacteroides abscessus strain FLAC029 chromosome, complete genome	1	806348-806478	1	CRISPRCasFinder	no		DEDDh,cas3,csa3,DinG,cas4,WYL	Orphan	CTCCCGTCCCGCACAGCGCCGAGCCG	26	0	0	NA	NA	NA	2	2	Orphan	DEDDh,cas3,csa3,DinG,cas4,WYL	NA|219aa|up_8|NZ_CP014956.1_797346_798003_+,NA|144aa|up_7|NZ_CP014956.1_798072_798504_+,NA|99aa|up_6|NZ_CP014956.1_798529_798826_-,NA|102aa|up_5|NZ_CP014956.1_799342_799648_-,NA|223aa|up_4|NZ_CP014956.1_799976_800645_-,NA|161aa|up_3|NZ_CP014956.1_800868_801351_-,NA|132aa|up_2|NZ_CP014956.1_801347_801743_-,NA|94aa|up_0|NZ_CP014956.1_804472_804754_+,NA|160aa|down_0|NZ_CP014956.1_807038_807518_+,NA|235aa|down_1|NZ_CP014956.1_807518_808223_+,NA|106aa|down_3|NZ_CP014956.1_808825_809143_+,NA|157aa|down_5|NZ_CP014956.1_810019_810490_-,NA|170aa|down_6|NZ_CP014956.1_810482_810992_-	NA|214aa|up_9|NZ_CP014956.1_796697_797339_+	pfam03167, UDG, Uracil DNA glycosylase superfamily	NA|219aa|up_8|NZ_CP014956.1_797346_798003_+	NA	NA|144aa|up_7|NZ_CP014956.1_798072_798504_+	NA	NA|99aa|up_6|NZ_CP014956.1_798529_798826_-	NA	NA|102aa|up_5|NZ_CP014956.1_799342_799648_-	NA	NA|223aa|up_4|NZ_CP014956.1_799976_800645_-	NA	NA|161aa|up_3|NZ_CP014956.1_800868_801351_-	NA	NA|132aa|up_2|NZ_CP014956.1_801347_801743_-	NA	NA|819aa|up_1|NZ_CP014956.1_801739_804196_-	pfam13476, AAA_23, AAA domain	NA|94aa|up_0|NZ_CP014956.1_804472_804754_+	NA	NA|160aa|down_0|NZ_CP014956.1_807038_807518_+	NA	NA|235aa|down_1|NZ_CP014956.1_807518_808223_+	NA	NA|122aa|down_2|NZ_CP014956.1_808233_808599_+	pfam09951, DUF2185, Protein of unknown function (DUF2185)	NA|106aa|down_3|NZ_CP014956.1_808825_809143_+	NA	NA|260aa|down_4|NZ_CP014956.1_809193_809973_+	pfam09951, DUF2185, Protein of unknown function (DUF2185)	NA|157aa|down_5|NZ_CP014956.1_810019_810490_-	NA	NA|170aa|down_6|NZ_CP014956.1_810482_810992_-	NA	NA|298aa|down_7|NZ_CP014956.1_811127_812021_-	pfam07751, Abi_2, Abi-like protein	NA|697aa|down_8|NZ_CP014956.1_812359_814450_+	COG2189, COG2189, Adenine specific DNA methylase Mod [DNA replication, recombination, and repair]	NA|847aa|down_9|NZ_CP014956.1_814446_816987_+	pfam04851, ResIII, Type III restriction enzyme, res subunit
GCF_001606315.1_ASM160631v1	NZ_CP014956	Mycobacteroides abscessus strain FLAC029 chromosome, complete genome	2	819665-820118	2,1,1	CRISPRCasFinder,CRT,PILER-CR	no		DEDDh,cas3,csa3,DinG,cas4,WYL	Orphan	CTGCTCCCCGCGTAAGCGGGGATGA,CTGCTCCCCGCGCAAGCGGGGATGA,CTGCTCCCCGCGCAAGCGGGGATGACCC	25,25,28	0	0	NA	NA	I-E:I-E:I-E	6,7,2	7	Orphan	DEDDh,cas3,csa3,DinG,cas4,WYL	NA|106aa|up_9|NZ_CP014956.1_808825_809143_+,NA|157aa|up_7|NZ_CP014956.1_810019_810490_-,NA|170aa|up_6|NZ_CP014956.1_810482_810992_-,NA|271aa|up_1|NZ_CP014956.1_818514_819327_-,NA|60aa|up_0|NZ_CP014956.1_819401_819581_-,NA|741aa|down_1|NZ_CP014956.1_820657_822880_+,NA|95aa|down_2|NZ_CP014956.1_823526_823811_+,NA|82aa|down_3|NZ_CP014956.1_823937_824183_+,NA|53aa|down_4|NZ_CP014956.1_824201_824360_+,NA|75aa|down_9|NZ_CP014956.1_828652_828877_-	NA|106aa|up_9|NZ_CP014956.1_808825_809143_+	NA	NA|260aa|up_8|NZ_CP014956.1_809193_809973_+	pfam09951, DUF2185, Protein of unknown function (DUF2185)	NA|157aa|up_7|NZ_CP014956.1_810019_810490_-	NA	NA|170aa|up_6|NZ_CP014956.1_810482_810992_-	NA	NA|298aa|up_5|NZ_CP014956.1_811127_812021_-	pfam07751, Abi_2, Abi-like protein	NA|697aa|up_4|NZ_CP014956.1_812359_814450_+	COG2189, COG2189, Adenine specific DNA methylase Mod [DNA replication, recombination, and repair]	NA|847aa|up_3|NZ_CP014956.1_814446_816987_+	pfam04851, ResIII, Type III restriction enzyme, res subunit	NA|480aa|up_2|NZ_CP014956.1_817028_818468_-	PHA03247, PHA03247, large tegument protein UL36; Provisional	NA|271aa|up_1|NZ_CP014956.1_818514_819327_-	NA	NA|60aa|up_0|NZ_CP014956.1_819401_819581_-	NA	NA|71aa|down_0|NZ_CP014956.1_820369_820582_+	cd04762, HTH_MerR-trunc, Helix-Turn-Helix DNA binding domain of truncated MerR-like proteins	NA|741aa|down_1|NZ_CP014956.1_820657_822880_+	NA	NA|95aa|down_2|NZ_CP014956.1_823526_823811_+	NA	NA|82aa|down_3|NZ_CP014956.1_823937_824183_+	NA	NA|53aa|down_4|NZ_CP014956.1_824201_824360_+	NA	NA|204aa|down_5|NZ_CP014956.1_824659_825271_+	cd16962, RuvC, Crossover junction endodeoxyribonuclease RuvC	NA|90aa|down_6|NZ_CP014956.1_825297_825567_+	cd02976, NrdH, NrdH-redoxin (NrdH) family; NrdH is a small monomeric protein with a conserved redox active CXXC motif within a TRX fold, characterized by a glutaredoxin (GRX)-like sequence and TRX-like activity profile	NA|128aa|down_7|NZ_CP014956.1_825563_825947_+	pfam12728, HTH_17, Helix-turn-helix domain	NA|845aa|down_8|NZ_CP014956.1_825974_828509_+	PRK12270, kgd, multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit	NA|75aa|down_9|NZ_CP014956.1_828652_828877_-	NA
GCF_001606315.1_ASM160631v1	NZ_CP014956	Mycobacteroides abscessus strain FLAC029 chromosome, complete genome	3	4478775-4478872	3	CRISPRCasFinder	no		DEDDh,cas3,csa3,DinG,cas4,WYL	Orphan	TCGTTGATGGCACTGGTGTGGGC	23	0	0	NA	NA	NA	1	1	Orphan	DEDDh,cas3,csa3,DinG,cas4,WYL	NA|129aa|up_4|NZ_CP014956.1_4473305_4473692_-,NA|218aa|up_3|NZ_CP014956.1_4473769_4474423_-,NA|219aa|up_2|NZ_CP014956.1_4474442_4475099_-,NA|199aa|down_5|NZ_CP014956.1_4484300_4484897_-	NA|284aa|up_9|NZ_CP014956.1_4469860_4470712_-	COG0785, CcdA, Cytochrome c biogenesis protein [Posttranslational modification, protein turnover, chaperones]	NA|160aa|up_8|NZ_CP014956.1_4470727_4471207_-	cd03011, TlpA_like_ScsD_MtbDsbE, TlpA-like family, suppressor for copper sensitivity D protein (ScsD) and actinobacterial DsbE homolog subfamily; composed of ScsD, the DsbE homolog of Mycobacterium tuberculosis (MtbDsbE) and similar proteins, all containing a redox-active CXXC motif	NA|312aa|up_7|NZ_CP014956.1_4471348_4472284_+	TIGR03560, F420_Rv1855c, probable F420-dependent oxidoreductase, Rv1855c family	NA|156aa|up_6|NZ_CP014956.1_4472310_4472778_+	PHA03247, PHA03247, large tegument protein UL36; Provisional	NA|170aa|up_5|NZ_CP014956.1_4472802_4473312_+	COG3889, COG3889, Predicted solute binding protein [General function prediction only]	NA|129aa|up_4|NZ_CP014956.1_4473305_4473692_-	NA	NA|218aa|up_3|NZ_CP014956.1_4473769_4474423_-	NA	NA|219aa|up_2|NZ_CP014956.1_4474442_4475099_-	NA	NA|498aa|up_1|NZ_CP014956.1_4475103_4476597_-	COG0699, COG0699, Predicted GTPases (dynamin-related) [General function prediction only]	NA|628aa|up_0|NZ_CP014956.1_4476593_4478477_-	COG0699, COG0699, Predicted GTPases (dynamin-related) [General function prediction only]	NA|230aa|down_0|NZ_CP014956.1_4480956_4481646_+	pfam13462, Thioredoxin_4, Thioredoxin	NA|294aa|down_1|NZ_CP014956.1_4481642_4482524_+	COG0785, CcdA, Cytochrome c biogenesis protein [Posttranslational modification, protein turnover, chaperones]	NA|121aa|down_2|NZ_CP014956.1_4482541_4482904_+	pfam03965, Penicillinase_R, Penicillinase repressor	NA|308aa|down_3|NZ_CP014956.1_4482900_4483824_+	cd07326, M56_BlaR1_MecR1_like, Peptidase M56-like including those in BlaR1 and MecR1, integral membrane metallopeptidase	NA|156aa|down_4|NZ_CP014956.1_4483820_4484288_+	COG2259, COG2259, Predicted membrane protein [Function unknown]	NA|199aa|down_5|NZ_CP014956.1_4484300_4484897_-	NA	NA|606aa|down_6|NZ_CP014956.1_4485078_4486896_+	COG0443, DnaK, Molecular chaperone [Posttranslational modification, protein turnover, chaperones]	NA|814aa|down_7|NZ_CP014956.1_4486916_4489358_+	smart00421, HTH_LUXR, helix_turn_helix, Lux Regulon	NA|977aa|down_8|NZ_CP014956.1_4489516_4492447_+	COG0247, GlpC, Fe-S oxidoreductase [Energy production and conversion]	NA|437aa|down_9|NZ_CP014956.1_4492454_4493765_+	PRK09265, PRK09265, aminotransferase AlaT; Validated
