The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP010266	Bordetella pertussis strain I707 chromosome, complete genome	4107557	27282	70036	4107557	tRNA,transposase	Synechococcus_phage(50.0%)	41	NA	NA
WP_010930363.1|27282_28233_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023995007.1|28314_28650_-	CoA transferase	NA	NA	NA	NA	NA
WP_010929578.1|28674_29109_-	OB-fold domain-containing protein	NA	NA	NA	NA	NA
WP_019247164.1|29141_30359_-	thiolase family protein	NA	NA	NA	NA	NA
WP_010929580.1|30364_30862_-	MaoC family dehydratase	NA	NA	NA	NA	NA
WP_019247165.1|31069_32005_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929582.1|32214_33006_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010929583.1|33048_34470_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_010929584.1|34625_35576_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814398.1|35572_36763_-	MFS transporter	NA	NA	NA	NA	NA
WP_010929585.1|37012_37924_+|tRNA	glycine--tRNA ligase subunit alpha	tRNA	NA	NA	NA	NA
WP_010929586.1|37925_40064_+|tRNA	glycine--tRNA ligase subunit beta	tRNA	NA	NA	NA	NA
WP_003814404.1|40060_40600_+	D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase	NA	NA	NA	NA	NA
WP_003814405.1|40603_41332_+	1-acyl-sn-glycerol-3-phosphate acyltransferase	NA	NA	NA	NA	NA
WP_010929587.1|41318_42212_+	M48 family metallopeptidase	NA	NA	NA	NA	NA
WP_019247766.1|42282_42678_+	lactoylglutathione lyase	NA	NA	NA	NA	NA
WP_003814412.1|42687_43218_+	peptide deformylase	NA	E3SLL2	Synechococcus_phage	35.4	3.7e-12
WP_010929588.1|43663_44614_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929589.1|45200_45749_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815265.1|45720_45957_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003815255.1|46084_46978_+	AEC family transporter	NA	NA	NA	NA	NA
WP_010929590.1|48147_49395_+	homoserine O-acetyltransferase	NA	NA	NA	NA	NA
WP_003817748.1|49391_50006_+	methionine biosynthesis protein MetW	NA	NA	NA	NA	NA
WP_010929591.1|50141_51092_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_029443813.1|51134_52391_+	muropeptide transporter	NA	NA	NA	NA	NA
WP_010929592.1|53622_54357_-	aspartate/glutamate racemase family protein	NA	NA	NA	NA	NA
WP_019247224.1|54362_54953_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.6	3.2e-20
WP_003817737.1|54977_55667_-	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_023852650.1|55663_56425_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010929594.1|56504_57404_-	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_005012808.1|57497_58448_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929595.1|59248_60475_-	type II toxin-antitoxin system HipA family toxin	NA	NA	NA	NA	NA
WP_047122776.1|60474_60888_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010929597.1|61077_62019_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019248755.1|62442_63417_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929599.1|63473_64055_-	DJ-1/PfpI family protein	NA	NA	NA	NA	NA
WP_010929600.1|64067_64370_-	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA	NA
WP_029443770.1|64488_65547_-	2Fe-2S iron-sulfur cluster binding domain-containing protein	NA	NA	NA	NA	NA
WP_019247832.1|65581_66853_-	TRAP transporter large permease	NA	NA	NA	NA	NA
WP_010929603.1|67482_68664_-	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929584.1|69085_70036_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 2
NZ_CP010266	Bordetella pertussis strain I707 chromosome, complete genome	4107557	232666	307010	4107557	transposase	uncultured_Mediterranean_phage(15.38%)	54	NA	NA
WP_010929591.1|232666_233617_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931563.1|233613_234804_-	voltage-gated potassium channel protein	NA	NA	NA	NA	NA
WP_010931562.1|234925_235690_-	phytanoyl-CoA dioxygenase family protein	NA	NA	NA	NA	NA
WP_003807735.1|235776_236880_-	AI-2E family transporter	NA	NA	NA	NA	NA
WP_010931561.1|237071_238088_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003815102.1|238369_238858_+	D-glycero-beta-D-manno-heptose 1-phosphate adenylyltransferase	NA	A0A1B1IUK5	uncultured_Mediterranean_phage	34.1	1.6e-17
WP_003817656.1|240201_240882_-	protein-L-isoaspartate O-methyltransferase	NA	A0A1B1IU40	uncultured_Mediterranean_phage	34.8	3.5e-15
WP_010931560.1|240943_241795_-	bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase	NA	NA	NA	NA	NA
WP_010931559.1|241791_242589_-	thiazole synthase	NA	NA	NA	NA	NA
WP_010931558.1|242692_243586_-	cobalamin-binding protein	NA	NA	NA	NA	NA
WP_010931557.1|243597_245487_-	TonB-dependent receptor	NA	A0A0P0I887	Acinetobacter_phage	30.8	7.6e-07
WP_010931556.1|245823_249597_+	methionine synthase	NA	A0A140XBC7	Dickeya_phage	50.8	8.6e-10
WP_010929591.1|249593_250544_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929826.1|250852_251545_-	3,4-dihydroxy-2-butanone-4-phosphate synthase	NA	A0A2H4PQS2	Staphylococcus_phage	41.6	6.3e-36
WP_003818232.1|251918_252419_-	SET domain-containing protein-lysine N-methyltransferase	NA	NA	NA	NA	NA
WP_023853391.1|252525_253446_+	bestrophin	NA	NA	NA	NA	NA
WP_010929823.1|253462_253939_-	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929822.1|254032_255883_+	biosynthetic-type acetolactate synthase large subunit	NA	E4WLQ6	Ostreococcus_tauri_virus	30.4	2.2e-59
WP_010929821.1|255938_256697_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010929820.1|256724_258158_-	aldehyde dehydrogenase family protein	NA	NA	NA	NA	NA
WP_003818225.1|258231_259011_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010929819.1|259023_259857_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_020699616.1|259865_260636_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	33.9	8.1e-24
WP_010929818.1|260635_261700_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929817.1|261851_264479_-	DNA topoisomerase III	NA	A0A0G2YA05	Acanthamoeba_polyphaga_mimivirus	25.4	6.1e-23
WP_010929816.1|264542_267164_+	GDYXXLXY domain-containing protein	NA	NA	NA	NA	NA
WP_003815964.1|268091_268550_-	DUF494 domain-containing protein	NA	NA	NA	NA	NA
WP_010929815.1|268828_271072_-	TonB-dependent hemoglobin/transferrin/lactoferrin family receptor	NA	NA	NA	NA	NA
WP_010929814.1|271268_273293_-	TRAP transporter permease	NA	NA	NA	NA	NA
WP_010929813.1|273416_274379_-	TAXI family TRAP transporter solute-binding subunit	NA	NA	NA	NA	NA
WP_010929812.1|274590_275730_+	DSD1 family PLP-dependent enzyme	NA	NA	NA	NA	NA
WP_010929811.1|275752_276718_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_004565905.1|276913_278104_+	acetylornithine transaminase	NA	A0A1V0SKB7	Klosneuvirus	26.7	4.4e-21
WP_003815955.1|278117_278363_+	DUF1653 domain-containing protein	NA	NA	NA	NA	NA
WP_010929810.1|278391_280413_-	acetyl/propionyl/methylcrotonyl-CoA carboxylase subunit alpha	NA	NA	NA	NA	NA
WP_003815953.1|280459_282067_-	methylcrotonoyl-CoA carboxylase	NA	A0A1B2ITV7	Pike_perch_iridovirus	57.3	5.4e-22
WP_010929808.1|282167_283337_-	acetyl-CoA C-acyltransferase	NA	NA	NA	NA	NA
WP_005012067.1|286218_287169_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929807.1|287192_288251_-	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
WP_003818201.1|288325_288700_+	MerR family DNA-binding transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|289254_290205_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929833.1|291761_292607_-	AraC family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929834.1|292694_293858_-	alpha-hydroxy-acid oxidizing protein	NA	NA	NA	NA	NA
WP_010929835.1|294276_295248_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929836.1|295286_296714_-	amidase	NA	NA	NA	NA	NA
WP_023853625.1|296833_297625_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010929838.1|297743_300197_-	DNA topoisomerase (ATP-hydrolyzing) subunit B	NA	G3M9Z3	Bacillus_virus	34.8	2.3e-112
WP_010929839.1|300291_301401_-	DNA polymerase III subunit beta	NA	B4UTW9	Rhizobium_phage	32.6	1.2e-41
WP_010929554.1|301403_302813_-	chromosomal replication initiator protein DnaA	NA	NA	NA	NA	NA
WP_003816025.1|303218_303353_+	50S ribosomal protein L34	NA	NA	NA	NA	NA
WP_003816026.1|303448_303820_+	ribonuclease P protein component	NA	NA	NA	NA	NA
WP_003816027.1|303816_304089_+	membrane protein insertion efficiency factor YidD	NA	A0A2H4PQM5	Staphylococcus_phage	52.2	7.0e-15
WP_010927254.1|304137_305829_+	membrane protein insertase YidC	NA	NA	NA	NA	NA
WP_005012067.1|306059_307010_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 4
NZ_CP010266	Bordetella pertussis strain I707 chromosome, complete genome	4107557	489375	607270	4107557	tRNA,transposase	Acinetobacter_phage(22.22%)	102	NA	NA
WP_005012067.1|489375_490326_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929956.1|490424_491375_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929957.1|492097_493372_+|tRNA	glutamyl-tRNA reductase	tRNA	NA	NA	NA	NA
WP_003807618.1|493458_494541_+	peptide chain release factor 1	NA	A0A0S4KWG0	Pseudomonas_phage	40.7	3.3e-07
WP_010929958.1|494551_495364_+	peptide chain release factor N(5)-glutamine methyltransferase	NA	NA	NA	NA	NA
WP_010929959.1|495400_495727_+	Grx4 family monothiol glutaredoxin	NA	NA	NA	NA	NA
WP_003807624.1|495731_496292_+	UbiX family flavin prenyltransferase	NA	NA	NA	NA	NA
WP_003819054.1|496532_497525_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929960.1|497543_498539_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_023853194.1|498554_499931_+	FAD binding domain-containing protein	NA	A0A0P0IVM8	Acinetobacter_phage	37.3	2.4e-18
WP_010929962.1|499923_502305_+	xanthine dehydrogenase family protein molybdopterin-binding subunit	NA	NA	NA	NA	NA
WP_019247263.1|502321_502711_+	SRPBCC family protein	NA	NA	NA	NA	NA
WP_020699695.1|502837_503068_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|503172_504123_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929963.1|504221_505172_-	septal ring lytic transglycosylase RlpA family protein	NA	F5B3X9	Synechococcus_phage	47.2	6.9e-17
WP_003815183.1|505168_506041_-	RNase adapter RapZ	NA	A0A1P8D5W0	Corynebacterium_phage	34.5	2.4e-08
WP_010929964.1|506971_508258_+	cytochrome c	NA	NA	NA	NA	NA
WP_010929965.1|508311_509238_-	HPr kinase/phosphorylase	NA	NA	NA	NA	NA
WP_010929966.1|509256_509712_-	PTS sugar transporter subunit IIA	NA	NA	NA	NA	NA
WP_003815177.1|510563_511355_-	LPS export ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	27.4	9.5e-20
WP_003815175.1|511386_512007_-	lipopolysaccharide transport periplasmic protein LptA	NA	NA	NA	NA	NA
WP_010929967.1|512003_512633_-	LPS export ABC transporter periplasmic protein LptC	NA	NA	NA	NA	NA
WP_003815172.1|512645_513254_-	HAD-IIIA family hydrolase	NA	E3T535	Cafeteria_roenbergensis_virus	26.1	5.2e-10
WP_003815171.1|513250_514240_-	KpsF/GutQ family sugar-phosphate isomerase	NA	A0A2P0VNK5	Tetraselmis_virus	37.7	4.3e-38
WP_010929968.1|514345_515560_+	formate-dependent phosphoribosylglycinamide formyltransferase	NA	NA	NA	NA	NA
WP_010929969.1|517511_518462_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929970.1|519895_521182_+	putative Na+/H+ antiporter	NA	NA	NA	NA	NA
WP_010929971.1|521347_521656_+	FmdB family transcriptional regulator	NA	NA	NA	NA	NA
WP_003807035.1|521656_522322_+	DUF502 domain-containing protein	NA	A0A2I7S9X1	Vibrio_phage	28.4	6.7e-11
WP_003807038.1|522362_524153_+|tRNA	aspartate--tRNA ligase	tRNA	A0A1V0SAC0	Catovirus	25.5	6.5e-08
WP_010929972.1|524265_525126_+	endonuclease/exonuclease/phosphatase family protein	NA	NA	NA	NA	NA
WP_010929973.1|525122_526328_+	cardiolipin synthase ClsB	NA	NA	NA	NA	NA
WP_010929974.1|526324_527209_-	DMT family transporter	NA	NA	NA	NA	NA
WP_033446233.1|528725_529160_-	carbon monoxide dehydrogenase	NA	NA	NA	NA	NA
WP_014905478.1|529122_530121_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931408.1|530232_531378_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931407.1|531452_532781_+	amidase	NA	NA	NA	NA	NA
WP_003815296.1|532814_533405_-	cysteine dioxygenase	NA	NA	NA	NA	NA
WP_010931406.1|533694_534489_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019249391.1|535658_536393_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010931404.1|536399_537266_-	copper resistance protein B	NA	NA	NA	NA	NA
WP_010931403.1|537273_539049_-	copper resistance system multicopper oxidase	NA	NA	NA	NA	NA
WP_029443756.1|539091_539589_-	cupredoxin family protein	NA	NA	NA	NA	NA
WP_005013747.1|539885_540836_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014486105.1|540934_541885_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931400.1|542225_543176_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931399.1|545499_546648_-	acyl-CoA dehydrogenase family protein	NA	NA	NA	NA	NA
WP_003817794.1|546692_547355_-	TetR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931397.1|547468_548461_+	nitronate monooxygenase	NA	NA	NA	NA	NA
WP_003815313.1|548457_549195_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003815315.1|549274_550096_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010931396.1|550184_551048_+	NAD(P)H-hydrate dehydratase	NA	NA	NA	NA	NA
WP_003815317.1|551174_551411_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931395.1|553385_554420_+	succinylglutamate desuccinylase/aspartoacylase family protein	NA	NA	NA	NA	NA
WP_003817805.1|554478_555456_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931394.1|555463_556384_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_023852622.1|556380_558081_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	32.7	1.0e-15
WP_010931393.1|558083_558989_+	hydrolase	NA	NA	NA	NA	NA
WP_010931392.1|559032_560166_+	M20 family metallopeptidase	NA	NA	NA	NA	NA
WP_005012808.1|560294_561245_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931391.1|561343_563413_-	UvrD-helicase domain-containing protein	NA	A7KV33	Bacillus_phage	37.3	2.6e-101
WP_019247688.1|563455_565558_-	primosomal protein N'	NA	NA	NA	NA	NA
WP_010931389.1|565864_566941_-	uroporphyrinogen decarboxylase	NA	NA	NA	NA	NA
WP_010931388.1|567016_567901_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003815341.1|568083_568506_-	F0F1 ATP synthase subunit epsilon	NA	NA	NA	NA	NA
WP_010931387.1|568515_569916_-	F0F1 ATP synthase subunit beta	NA	NA	NA	NA	NA
WP_003817813.1|569958_570864_-	F0F1 ATP synthase subunit gamma	NA	NA	NA	NA	NA
WP_010931386.1|570962_572504_-	F0F1 ATP synthase subunit alpha	NA	NA	NA	NA	NA
WP_003815348.1|572538_573078_-	F0F1 ATP synthase subunit delta	NA	NA	NA	NA	NA
WP_010931385.1|573090_573561_-	F0F1 ATP synthase subunit B	NA	NA	NA	NA	NA
WP_003815363.1|573698_573941_-	F0F1 ATP synthase subunit C	NA	NA	NA	NA	NA
WP_003815364.1|574057_574939_-	F0F1 ATP synthase subunit A	NA	NA	NA	NA	NA
WP_003815365.1|575011_575332_-	ATP synthase subunit I	NA	NA	NA	NA	NA
WP_005012808.1|576183_577134_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003815367.1|578457_579234_-	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_010931383.1|579268_581041_+	M61 family metallopeptidase	NA	NA	NA	NA	NA
WP_010931382.1|581042_581945_-	NAD(P)/FAD-dependent oxidoreductase	NA	G3MA85	Bacillus_virus	24.0	1.9e-08
WP_003817821.1|582069_582429_+	dihydroneopterin aldolase	NA	NA	NA	NA	NA
WP_010931381.1|582460_583423_+|tRNA	tRNA 2-thiocytidine(32) synthetase TtcA	tRNA	A0A0U2S5Z2	Escherichia_phage	64.5	4.6e-93
WP_005012067.1|583521_584472_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931380.1|584484_585420_-	D-2-hydroxyacid dehydrogenase family protein	NA	A0A1J0F959	Only_Syngen_Nebraska_virus	27.7	6.4e-15
WP_010931379.1|585479_586319_-	thiol:disulfide interchange protein DsbC	NA	NA	NA	NA	NA
WP_010931378.1|586315_587485_-	UbiH/UbiF family hydroxylase	NA	NA	NA	NA	NA
WP_003815379.1|587481_588771_-	murein transglycosylase A	NA	NA	NA	NA	NA
WP_003815381.1|588813_589188_-	Co2+/Mg2+ efflux protein ApaG	NA	NA	NA	NA	NA
WP_003815384.1|589293_590031_+	ribulose-phosphate 3-epimerase	NA	NA	NA	NA	NA
WP_010931377.1|590038_590743_+	phosphoglycolate phosphatase	NA	NA	NA	NA	NA
WP_010931376.1|591006_592527_+	anthranilate synthase component I	NA	S4VT78	Pandoravirus	32.1	9.0e-43
WP_003815390.1|592582_593146_+	aminodeoxychorismate/anthranilate synthase component II	NA	A0A0P0IKJ1	Acinetobacter_phage	62.1	1.1e-65
WP_003817833.1|593164_594196_+	anthranilate phosphoribosyltransferase	NA	A0A0N7IRD9	Acinetobacter_phage	42.7	7.4e-73
WP_010931375.1|594192_594981_+	indole-3-glycerol phosphate synthase TrpC	NA	A0A0P0IR83	Acinetobacter_phage	53.0	5.1e-66
WP_019247413.1|595001_595160_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023997720.1|595156_596146_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|597902_598853_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931374.1|600075_600978_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814312.1|600979_601834_-	formyltetrahydrofolate deformylase	NA	NA	NA	NA	NA
WP_010931373.1|601880_602990_-	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010931372.1|603000_603519_-	flavin reductase family protein	NA	NA	NA	NA	NA
WP_003814302.1|603548_604181_-	pyridoxamine 5'-phosphate oxidase	NA	NA	NA	NA	NA
WP_003814300.1|604252_604912_-	gamma-glutamylcyclotransferase	NA	NA	NA	NA	NA
WP_003814298.1|604908_606129_-	MFS transporter	NA	NA	NA	NA	NA
WP_019247745.1|606397_607270_+|tRNA	tRNA threonylcarbamoyladenosine dehydratase	tRNA	NA	NA	NA	NA
>prophage 5
NZ_CP010266	Bordetella pertussis strain I707 chromosome, complete genome	4107557	611684	675517	4107557	tRNA,transposase	Pandoravirus(12.5%)	47	NA	NA
WP_010931363.1|611684_612701_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003814287.1|612972_613599_-	aminotransferase class IV	NA	NA	NA	NA	NA
WP_010931367.1|613654_614782_-	aminodeoxychorismate synthase component I	NA	S4VT78	Pandoravirus	37.8	3.8e-38
WP_003814283.1|614787_620505_-	excinuclease ABC subunit UvrA	NA	A0A1B1IVR3	uncultured_Mediterranean_phage	39.5	1.0e-195
WP_003814277.1|621072_622017_-	LysR family transcriptional regulator	NA	A0A2P0ZL89	Lactobacillus_phage	23.2	8.4e-07
WP_003814275.1|622205_623141_+	glycosyltransferase family 2 protein	NA	NA	NA	NA	NA
WP_010931365.1|623258_624830_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019247692.1|624909_626118_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_019247693.1|626615_627533_+	DMT family transporter	NA	NA	NA	NA	NA
WP_003814254.1|629893_630115_+	glycine zipper 2TM domain-containing protein	NA	NA	NA	NA	NA
WP_010929632.1|630445_631462_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003814252.1|631546_631798_-	cell division topological specificity factor MinE	NA	NA	NA	NA	NA
WP_003814250.1|631801_632617_-	septum site-determining protein MinD	NA	NA	NA	NA	NA
WP_010931362.1|632729_633608_-	septum site-determining protein MinC	NA	NA	NA	NA	NA
WP_003820957.1|633719_635483_-|tRNA	glutamine--tRNA ligase/YqeY domain fusion protein	tRNA	A0A222YZ70	Escherichia_phage	50.0	5.0e-162
WP_010931361.1|635598_636939_+	cytochrome ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
WP_010927010.1|638008_639433_-	HAMP domain-containing protein	NA	NA	NA	NA	NA
WP_003814239.1|639432_640134_-	response regulator	NA	W8CYM9	Bacillus_phage	36.6	5.6e-32
WP_010930179.1|641638_642589_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994844.1|642684_643656_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931357.1|643660_644341_-	tellurite resistance TerB family protein	NA	NA	NA	NA	NA
WP_003814742.1|644478_644871_+	OsmC family protein	NA	NA	NA	NA	NA
WP_010931561.1|644978_645995_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003814739.1|646234_647020_-	enoyl-ACP reductase FabI	NA	NA	NA	NA	NA
WP_010931356.1|647114_648524_-	transglycosylase SLT domain-containing protein	NA	NA	NA	NA	NA
WP_010927090.1|648534_649335_-	hydroxyacylglutathione hydrolase	NA	NA	NA	NA	NA
WP_010931355.1|649355_650126_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_010931354.1|650168_650636_+	ribonuclease HI	NA	J9Q745	Salmonella_phage	50.7	5.6e-36
WP_005013747.1|650632_651583_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003818344.1|653531_654410_-	fatty acid desaturase	NA	NA	NA	NA	NA
WP_019247959.1|655336_658315_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|658668_659619_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931353.1|659615_660704_-	NAD(P)H-binding protein	NA	NA	NA	NA	NA
WP_010931352.1|660739_661603_-	MaoC family dehydratase N-terminal domain-containing protein	NA	NA	NA	NA	NA
WP_010931351.1|662742_663132_-	OB-fold domain-containing protein	NA	NA	NA	NA	NA
WP_014486103.1|663135_663918_-	crotonase/enoyl-CoA hydratase family protein	NA	NA	NA	NA	NA
WP_047122778.1|663951_664737_-	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010931349.1|665012_666152_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931348.1|666148_666940_+	ATP-binding cassette domain-containing protein	NA	A0A1M7XV31	Cedratvirus	29.4	1.7e-08
WP_010931347.1|666936_667686_+	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	27.8	1.9e-09
WP_010931346.1|667682_668555_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_004566224.1|668554_669556_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003808195.1|669552_670716_+	acyl-CoA dehydrogenase family protein	NA	NA	NA	NA	NA
WP_003808193.1|670741_671425_+	TetR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247312.1|671378_672713_+	AMP-binding protein	NA	NA	NA	NA	NA
WP_010931344.1|672705_673800_+	CoA transferase	NA	NA	NA	NA	NA
WP_005012067.1|674566_675517_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 6
NZ_CP010266	Bordetella pertussis strain I707 chromosome, complete genome	4107557	694428	771737	4107557	protease,tRNA,integrase,transposase	Bacillus_phage(20.0%)	57	741565:741583	761453:761471
WP_023995489.1|694428_695379_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931335.1|695477_696953_-	M81 family metallopeptidase	NA	NA	NA	NA	NA
WP_010931334.1|698540_699428_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931333.1|699430_700372_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931332.1|700417_701983_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931331.1|703760_705086_-	aspartate aminotransferase family protein	NA	NA	NA	NA	NA
WP_010931330.1|705268_706726_+	PLP-dependent aminotransferase family protein	NA	A0A1X9I5H2	Streptococcus_phage	21.1	7.6e-15
WP_003816386.1|706689_707187_-	dihydrofolate reductase	NA	A0A140HLG8	Bacillus_phage	38.9	3.0e-24
WP_010931328.1|707217_708189_-	thymidylate synthase	NA	J7KKN7	Erwinia_phage	33.3	4.8e-50
WP_003808444.1|708241_708679_-	OsmC family protein	NA	NA	NA	NA	NA
WP_010931327.1|708802_709471_+	2-polyprenyl-3-methyl-6-methoxy-1,4-benzoquinone monooxygenase	NA	NA	NA	NA	NA
WP_003808448.1|710199_711303_+	glycosyltransferase family 4 protein	NA	NA	NA	NA	NA
WP_171024626.1|711405_712683_+	Vi polysaccharide biosynthesis UDP-N-acetylglucosamine C-6 dehydrogenase TviB	NA	NA	NA	NA	NA
WP_010930472.1|712694_713720_+	Vi polysaccharide biosynthesis UDP-N-acetylglucosaminuronic acid C-4 epimerase TviC	NA	A0A2K9L4U8	Tupanvirus	44.2	4.7e-72
WP_010931325.1|713721_715092_+	polysaccharide biosynthesis C-terminal domain-containing protein	NA	NA	NA	NA	NA
WP_010931324.1|715092_716229_+	glycosyltransferase family 4 protein	NA	NA	NA	NA	NA
WP_010931323.1|716275_718201_+	asparagine synthase (glutamine-hydrolyzing)	NA	A0A2K9R7N5	Dishui_lake_phycodnavirus	29.0	1.0e-27
WP_010931322.1|718197_719319_+	glycosyltransferase family 4 protein	NA	NA	NA	NA	NA
WP_010931321.1|719315_720470_+	glycosyltransferase	NA	NA	NA	NA	NA
WP_010931320.1|720466_721597_+	glycosyltransferase family 4 protein	NA	NA	NA	NA	NA
WP_003808462.1|721604_723170_-	glucose-6-phosphate isomerase	NA	NA	NA	NA	NA
WP_010931319.1|723176_724559_-	phosphomannomutase/phosphoglucomutase	NA	A0A127AWJ1	Bacillus_phage	31.6	6.2e-51
WP_003808465.1|724837_725449_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931317.1|725540_726956_+	FAD-binding oxidoreductase	NA	NA	NA	NA	NA
WP_003818936.1|726973_727684_+	response regulator transcription factor	NA	NA	NA	NA	NA
WP_010931316.1|727680_729003_+	HAMP domain-containing histidine kinase	NA	NA	NA	NA	NA
WP_010931315.1|729082_731044_+	sulfatase-like hydrolase/transferase	NA	NA	NA	NA	NA
WP_003818932.1|731169_732483_-	fumarylacetoacetase	NA	NA	NA	NA	NA
WP_003818930.1|732591_733890_-	homogentisate 1,2-dioxygenase	NA	NA	NA	NA	NA
WP_010931314.1|734072_734981_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003808487.1|734990_735200_-	DUF2783 domain-containing protein	NA	NA	NA	NA	NA
WP_003808489.1|735211_736891_-	FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010931313.1|736992_737946_-	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
WP_010925978.1|738036_738864_-	bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase	NA	NA	NA	NA	NA
WP_010931312.1|738862_740749_+	tetratricopeptide repeat protein	NA	NA	NA	NA	NA
WP_003818921.1|740745_741345_+	lipoprotein localization protein LolB	NA	NA	NA	NA	NA
WP_010931311.1|741393_742293_+	4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase	NA	NA	NA	NA	NA
741565:741583	attL	CTGCCTGGCGTGGCCGAGT	NA	NA	NA	NA
WP_010931310.1|742501_743452_+	ribose-phosphate pyrophosphokinase	NA	A0A2K9L8D8	Tupanvirus	35.5	7.3e-43
WP_029443719.1|743574_744189_+	50S ribosomal protein L25/general stress protein Ctc	NA	NA	NA	NA	NA
WP_010931308.1|744317_744914_+|tRNA	aminoacyl-tRNA hydrolase	tRNA	NA	NA	NA	NA
WP_010931307.1|744910_745693_+|protease	CPBP family intramembrane metalloprotease	protease	NA	NA	NA	NA
WP_010931306.1|745765_746857_+	redox-regulated ATPase YchF	NA	NA	NA	NA	NA
WP_010931305.1|747136_748264_+|integrase	site-specific integrase	integrase	A0A1B0VMI6	Pseudomonas_phage	33.6	1.4e-48
WP_010931304.1|748605_749652_+	Fic family protein	NA	NA	NA	NA	NA
WP_010931303.1|749799_752919_+	DEAD/DEAH box helicase family protein	NA	NA	NA	NA	NA
WP_023994585.1|752920_755872_+	DNA methylase	NA	G8I4P9	Mycobacterium_phage	25.1	2.9e-21
WP_010931301.1|755887_757099_+	AAA family ATPase	NA	NA	NA	NA	NA
WP_010931070.1|757282_758233_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_077274087.1|758249_758744_+	DUF4276 family protein	NA	NA	NA	NA	NA
WP_019247740.1|758747_759005_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019248455.1|759548_760460_+	UvrD-helicase domain-containing protein	NA	NA	NA	NA	NA
WP_029443992.1|760541_760826_+	ATP-dependent helicase	NA	A0A1V0SIN4	Klosneuvirus	34.1	6.8e-05
WP_005012067.1|761609_762560_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
761453:761471	attR	ACTCGGCCACGCCAGGCAG	NA	NA	NA	NA
WP_019247178.1|762978_765543_-	autotransporter domain-containing protein	NA	NA	NA	NA	NA
WP_019247179.1|765587_767441_-	autotransporter-associated beta strand repeat-containing protein	NA	NA	NA	NA	NA
WP_014905963.1|767773_769345_+	winged helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|770786_771737_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 8
NZ_CP010266	Bordetella pertussis strain I707 chromosome, complete genome	4107557	838462	911922	4107557	tRNA,transposase	Streptococcus_phage(14.29%)	58	NA	NA
WP_005012067.1|838462_839413_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|839511_840462_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003820745.1|840624_841155_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003814611.1|841154_841466_+	cell division protein ZapA	NA	NA	NA	NA	NA
WP_005012808.1|841910_842861_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003820749.1|843568_844357_-	prolipoprotein diacylglyceryl transferase	NA	NA	NA	NA	NA
WP_010931269.1|844476_846165_+	dihydroxy-acid dehydratase	NA	NA	NA	NA	NA
WP_010929235.1|846148_846481_+	c-type cytochrome	NA	NA	NA	NA	NA
WP_010931268.1|846504_847065_+	peptide-methionine (S)-S-oxide reductase MsrA	NA	NA	NA	NA	NA
WP_010931267.1|847132_848245_-	4-hydroxyphenylpyruvate dioxygenase	NA	NA	NA	NA	NA
WP_003820758.1|848397_848874_+	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_047122782.1|855403_855847_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003810239.1|855911_856184_-	N-acetyltransferase	NA	NA	NA	NA	NA
WP_010930706.1|856180_857128_-	3-hydroxybutyryl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_010930707.1|857309_858704_+	amidase family protein	NA	NA	NA	NA	NA
WP_003810249.1|858726_859122_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930708.1|859118_860378_-	glutamate-5-semialdehyde dehydrogenase	NA	A0A1X9I5D4	Streptococcus_phage	45.7	1.1e-91
WP_003818514.1|860499_861555_-	DNA polymerase III subunit delta	NA	NA	NA	NA	NA
WP_003810254.1|861557_862217_-	lipoprotein	NA	NA	NA	NA	NA
WP_003818515.1|862232_864890_-|tRNA	leucine--tRNA ligase	tRNA	A0A2H4PQS0	Staphylococcus_phage	39.0	3.3e-173
WP_010930709.1|864967_866170_-	MFS transporter	NA	NA	NA	NA	NA
WP_003810260.1|866166_866679_-	MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247822.1|866801_867239_-	HU family DNA-binding protein	NA	NA	NA	NA	NA
WP_010931070.1|867515_868466_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_077069014.1|868564_869515_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930710.1|869768_871574_+	STAS domain-containing protein	NA	A0A2H4J153	uncultured_Caudovirales_phage	27.5	2.2e-19
WP_010930711.1|871687_871855_-	50S ribosomal protein L33	NA	NA	NA	NA	NA
WP_003810297.1|871918_872155_-	50S ribosomal protein L28	NA	NA	NA	NA	NA
WP_010930712.1|872523_873723_-	multidrug effflux MFS transporter	NA	NA	NA	NA	NA
WP_010929591.1|875238_876189_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003818523.1|876640_877642_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003810306.1|877814_878672_+	proline/glycine betaine ABC transporter permease	NA	NA	NA	NA	NA
WP_003810308.1|878668_879931_+	glycine betaine/L-proline ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	36.6	6.8e-28
WP_003818524.1|880031_880406_+	tautomerase family protein	NA	NA	NA	NA	NA
WP_010930713.1|880478_881666_+	acetyl-CoA C-acyltransferase family protein	NA	NA	NA	NA	NA
WP_010930714.1|881750_882521_+	spermidine synthase	NA	NA	NA	NA	NA
WP_010930715.1|882634_883399_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930716.1|883349_884651_+	malonyl-CoA decarboxylase family protein	NA	NA	NA	NA	NA
WP_010930717.1|884647_885454_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003818532.1|887198_888170_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003818533.1|888326_888839_+	superoxide dismutase family protein	NA	Q9MC02	Salmonella_phage	52.3	1.8e-43
WP_010930718.1|888997_889972_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930719.1|890972_891767_+	ABC transporter ATP-binding protein	NA	A0A1V0SE00	Indivirus	25.7	5.1e-05
WP_003818535.1|891792_892599_-	TOBE domain-containing protein	NA	NA	NA	NA	NA
WP_003810329.1|892709_893300_+	DUF4136 domain-containing protein	NA	NA	NA	NA	NA
WP_010930720.1|893310_894489_+	patatin-like phospholipase family protein	NA	NA	NA	NA	NA
WP_010930721.1|894591_894966_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_019248531.1|895218_896550_+	efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
WP_019247651.1|896616_899847_+	multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_003810344.1|901337_902084_+	pyridoxine 5'-phosphate synthase	NA	NA	NA	NA	NA
WP_010930724.1|902168_902630_+	holo-ACP synthase	NA	NA	NA	NA	NA
WP_010930725.1|902667_903726_+	beta-N-acetylhexosaminidase	NA	NA	NA	NA	NA
WP_010930726.1|903688_905518_+	excinuclease ABC subunit UvrC	NA	NA	NA	NA	NA
WP_003810356.1|905557_906130_+	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	NA	NA	NA	NA	NA
WP_010930727.1|907554_908376_-	NADPH-dependent 7-cyano-7-deazaguanine reductase QueF	NA	A0A2I7SAX1	Vibrio_phage	37.6	4.1e-42
WP_010930728.1|908694_910017_+	isocitrate lyase	NA	NA	NA	NA	NA
WP_010930729.1|910376_911012_+	membrane protein	NA	NA	NA	NA	NA
WP_010930730.1|910971_911922_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 9
NZ_CP010266	Bordetella pertussis strain I707 chromosome, complete genome	4107557	929761	964211	4107557	transposase	Erysipelothrix_phage(33.33%)	31	NA	NA
WP_005015810.1|929761_930712_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|930933_931884_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812024.1|931880_932183_-	SelT/SelW/SelH family protein	NA	NA	NA	NA	NA
WP_003812026.1|932342_932747_+	group III truncated hemoglobin	NA	NA	NA	NA	NA
WP_010930743.1|932739_933966_+	NnrS family protein	NA	NA	NA	NA	NA
WP_003812030.1|933962_934409_+	membrane protein	NA	NA	NA	NA	NA
WP_003812032.1|934478_935261_+	exodeoxyribonuclease III	NA	NA	NA	NA	NA
WP_010930744.1|935302_936808_+	M81 family metallopeptidase	NA	NA	NA	NA	NA
WP_019247851.1|937093_937927_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930745.1|939364_940186_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_010930746.1|940204_941059_-	polysaccharide deacetylase	NA	NA	NA	NA	NA
WP_003812044.1|941062_942034_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019247855.1|942718_942895_+	winged helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_005013747.1|943380_944331_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812172.1|945468_945765_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247707.1|945939_947292_+	glutathione-disulfide reductase	NA	A0A2K5B2C5	Erysipelothrix_phage	27.6	2.9e-45
WP_010930153.1|947434_948451_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010930748.1|950430_951444_-	pyridoxamine 5'-phosphate oxidase family protein	NA	NA	NA	NA	NA
WP_010930749.1|951530_952436_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003812179.1|952592_952937_+	exported protein	NA	NA	NA	NA	NA
WP_010930750.1|953094_953553_+	(2Fe-2S)-binding protein	NA	NA	NA	NA	NA
WP_010930751.1|953566_955783_+	xanthine dehydrogenase family protein molybdopterin-binding subunit	NA	NA	NA	NA	NA
WP_003812183.1|955779_956841_+	XdhC family protein	NA	NA	NA	NA	NA
WP_010930752.1|956869_957844_+	AraC family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930753.1|957795_958614_-	hypothetical protein	NA	A0A1B1INV8	uncultured_Mediterranean_phage	28.8	2.3e-16
WP_003812191.1|958626_959235_-	LON peptidase substrate-binding domain-containing protein	NA	NA	NA	NA	NA
WP_010930754.1|959409_959805_+	VOC family protein	NA	NA	NA	NA	NA
WP_010930755.1|959823_961263_+	MFS transporter	NA	A0A0M3UL24	Mycobacterium_phage	37.4	7.4e-55
WP_003812199.1|961291_961639_+	GFA family protein	NA	NA	NA	NA	NA
WP_010929577.1|961657_962608_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|963260_964211_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 10
NZ_CP010266	Bordetella pertussis strain I707 chromosome, complete genome	4107557	984904	1039805	4107557	protease,tRNA,transposase	Klosneuvirus(22.22%)	53	NA	NA
WP_005012067.1|984904_985855_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_162268681.1|985872_986013_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930769.1|986827_987187_-	CidA/LrgA family protein	NA	NA	NA	NA	NA
WP_010930770.1|987174_988611_-	dethiobiotin synthase	NA	NA	NA	NA	NA
WP_010930771.1|988607_989261_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_010930772.1|989257_990451_-	8-amino-7-oxononanoate synthase	NA	NA	NA	NA	NA
WP_010930773.1|990554_991829_+	adenosylmethionine--8-amino-7-oxononanoate transaminase	NA	A0A1V0SKB7	Klosneuvirus	28.9	9.6e-14
WP_005012067.1|991825_992776_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930774.1|992942_993917_+	membrane protein	NA	NA	NA	NA	NA
WP_003810379.1|993913_994057_+	cbb3-type cytochrome oxidase assembly protein CcoS	NA	NA	NA	NA	NA
WP_003810383.1|995678_996341_+	cytochrome-c oxidase, cbb3-type subunit II	NA	NA	NA	NA	NA
WP_003818560.1|996343_996520_+	cytochrome oxidase	NA	NA	NA	NA	NA
WP_010930775.1|996516_997455_+	cytochrome-c oxidase, cbb3-type subunit III	NA	NA	NA	NA	NA
WP_010930776.1|997546_999037_+	cytochrome c oxidase accessory protein CcoG	NA	NA	NA	NA	NA
WP_010930777.1|999122_999275_+	lipoprotein	NA	NA	NA	NA	NA
WP_010930778.1|999288_999528_+	membrane protein	NA	NA	NA	NA	NA
WP_010930779.1|999623_1000367_+	sulfite exporter TauE/SafE family protein	NA	NA	NA	NA	NA
WP_010930780.1|1000399_1000900_+	N-acetyltransferase	NA	NA	NA	NA	NA
WP_170954295.1|1000962_1001922_+	ATP-binding cassette domain-containing protein	NA	A0A2H4PQG7	Staphylococcus_phage	33.6	1.7e-23
WP_003810400.1|1001918_1002680_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010930782.1|1002695_1003781_-	AI-2E family transporter	NA	NA	NA	NA	NA
WP_005013747.1|1003980_1004931_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|1005029_1005980_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_047122784.1|1005939_1006353_-	transcriptional regulator	NA	A0A222YXG1	Escherichia_phage	59.0	3.8e-36
WP_003816708.1|1006637_1006937_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930783.1|1007346_1009629_-	RNA polymerase sigma factor RpoD	NA	A0A2I7SAT0	Vibrio_phage	30.1	3.2e-36
WP_124740709.1|1010094_1010289_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930784.1|1010314_1012345_-	DNA primase	NA	A0A0K1LMQ9	Caulobacter_phage	41.9	1.0e-65
WP_006218592.1|1012364_1012577_-	30S ribosomal protein S21	NA	NA	NA	NA	NA
WP_003810720.1|1012854_1013394_-	phosphoribosyltransferase	NA	NA	NA	NA	NA
WP_023852902.1|1013507_1014803_-	adenylosuccinate synthase	NA	A0A160ER07	Powai_lake_megavirus	33.5	3.0e-63
WP_010930786.1|1014879_1016037_-	ATP phosphoribosyltransferase regulatory subunit	NA	NA	NA	NA	NA
WP_010930787.1|1016220_1017120_-|protease	protease modulator HflC	protease	NA	NA	NA	NA
WP_010930788.1|1017138_1018443_-|protease	FtsH protease activity modulator HflK	protease	NA	NA	NA	NA
WP_010930789.1|1018408_1019515_-	GTPase HflX	NA	NA	NA	NA	NA
WP_003810707.1|1019602_1019839_-	RNA chaperone Hfq	NA	NA	NA	NA	NA
WP_010930790.1|1019977_1021048_-	histidinol-phosphate transaminase	NA	A0A1X6WGT4	Pacmanvirus	25.7	2.5e-15
WP_003810703.1|1021051_1022407_-	ribosome biogenesis GTPase Der	NA	NA	NA	NA	NA
WP_003810701.1|1022433_1023594_-	outer membrane protein assembly factor BamB	NA	NA	NA	NA	NA
WP_010930791.1|1023596_1024235_-	tetratricopeptide repeat protein	NA	NA	NA	NA	NA
WP_023995843.1|1024236_1025523_-|tRNA	histidine--tRNA ligase	tRNA	NA	NA	NA	NA
WP_010930793.1|1025581_1026877_-	flavodoxin-dependent (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase	NA	NA	NA	NA	NA
WP_003810693.1|1026883_1027390_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_004568542.1|1027386_1028535_-	23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN	NA	NA	NA	NA	NA
WP_003810689.1|1028562_1028988_-	nucleoside-diphosphate kinase	NA	D2E8E1	Anguillid_herpesvirus	43.2	2.1e-21
WP_010930794.1|1029310_1032193_+|tRNA	valine--tRNA ligase	tRNA	A0A1V0SK04	Klosneuvirus	37.1	3.7e-138
WP_023852900.1|1032285_1033041_-	MipA/OmpV family protein	NA	NA	NA	NA	NA
WP_010930796.1|1033806_1035156_+	two-component sensor histidine kinase	NA	NA	NA	NA	NA
WP_076879566.1|1035254_1036205_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930048.1|1036303_1037254_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930594.1|1037327_1037801_+	RidA family protein	NA	NA	NA	NA	NA
WP_010930593.1|1037826_1039035_+	aminotransferase class V-fold PLP-dependent enzyme	NA	NA	NA	NA	NA
WP_003816734.1|1039031_1039805_-|tRNA	tRNA (guanosine(37)-N1)-methyltransferase TrmD	tRNA	NA	NA	NA	NA
>prophage 11
NZ_CP010266	Bordetella pertussis strain I707 chromosome, complete genome	4107557	1072454	1138003	4107557	protease,tRNA,transposase	Lake_Baikal_phage(20.0%)	58	NA	NA
WP_010929577.1|1072454_1073405_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930573.1|1073605_1074415_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_005013747.1|1074539_1075490_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930572.1|1075486_1076380_-	methylglyoxal synthase	NA	NA	NA	NA	NA
WP_003812452.1|1076504_1076699_-	Fe-S cluster assembly protein IscX	NA	NA	NA	NA	NA
WP_003812453.1|1076698_1077040_-	ISC system 2Fe-2S type ferredoxin	NA	NA	NA	NA	NA
WP_010930571.1|1077049_1078912_-	Fe-S protein assembly chaperone HscA	NA	A0A0N9QXN8	Chrysochromulina_ericina_virus	42.4	3.0e-101
WP_003812456.1|1079041_1079554_-	Fe-S protein assembly co-chaperone HscB	NA	NA	NA	NA	NA
WP_003812458.1|1079556_1079880_-	iron-sulfur cluster assembly protein IscA	NA	A0A2H4N7N5	Lake_Baikal_phage	52.8	6.8e-25
WP_003812460.1|1079881_1080292_-	Fe-S cluster assembly scaffold IscU	NA	A0A218MKD1	uncultured_virus	79.0	7.5e-53
WP_010930570.1|1080329_1081541_-	IscS subfamily cysteine desulfurase	NA	NA	NA	NA	NA
WP_003812463.1|1081558_1082071_-	Fe-S cluster assembly transcriptional regulator IscR	NA	NA	NA	NA	NA
WP_010930569.1|1082286_1082778_-	low molecular weight phosphotyrosine protein phosphatase	NA	NA	NA	NA	NA
WP_010930568.1|1083030_1085067_-	excinuclease ABC subunit UvrB	NA	NA	NA	NA	NA
WP_019247244.1|1085144_1086347_+	aspartate/tyrosine/aromatic aminotransferase	NA	NA	NA	NA	NA
WP_010930566.1|1086475_1087126_+	transcriptional repressor LexA	NA	A0A2H4JG58	uncultured_Caudovirales_phage	50.7	3.3e-10
WP_005012067.1|1088683_1089634_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247934.1|1090204_1090417_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247935.1|1090434_1091166_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003812478.1|1091200_1091842_-	CoA transferase subunit B	NA	NA	NA	NA	NA
WP_010930565.1|1091834_1092503_-	3-oxoacid CoA-transferase subunit A	NA	NA	NA	NA	NA
WP_010930564.1|1094715_1095492_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930563.1|1095513_1096671_-	thiolase	NA	NA	NA	NA	NA
WP_003812491.1|1096667_1097099_-	OB-fold domain-containing protein	NA	NA	NA	NA	NA
WP_015063637.1|1097095_1097899_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010930561.1|1097912_1098314_-	MaoC family dehydratase	NA	NA	NA	NA	NA
WP_010930560.1|1098380_1099352_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930559.1|1099417_1100641_-	CoA transferase	NA	NA	NA	NA	NA
WP_019247936.1|1100868_1101819_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930557.1|1101942_1104396_-	endopeptidase La	NA	A0A0R6PGP8	Moraxella_phage	52.0	1.5e-220
WP_010930556.1|1104584_1105889_-|protease	ATP-dependent Clp protease ATP-binding subunit ClpX	protease	G3M9Z9	Bacillus_virus	53.8	3.2e-129
WP_003812508.1|1105993_1106647_-	ATP-dependent Clp endopeptidase proteolytic subunit ClpP	NA	A0A223W000	Agrobacterium_phage	57.5	6.8e-56
WP_010930555.1|1106649_1107960_-	trigger factor	NA	NA	NA	NA	NA
WP_010930554.1|1108156_1108717_+	TIGR00645 family protein	NA	K4K6D8	Caulobacter_phage	33.7	1.0e-23
WP_010930553.1|1108828_1109029_-	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	64.4	7.4e-14
WP_003812519.1|1109374_1109941_-	DUF924 family protein	NA	NA	NA	NA	NA
WP_010930551.1|1110024_1110228_-	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	62.1	1.6e-16
WP_003812524.1|1110534_1110855_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003812526.1|1110896_1111178_-	membrane protein	NA	NA	NA	NA	NA
WP_010930550.1|1111252_1112509_-	autotransporter Phg	NA	NA	NA	NA	NA
WP_010930549.1|1112891_1113221_+	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
WP_003812536.1|1114791_1115613_+	2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase	NA	NA	NA	NA	NA
WP_010930548.1|1115612_1116752_+	succinyl-diaminopimelate desuccinylase	NA	NA	NA	NA	NA
WP_019247938.1|1116758_1117655_+	50S ribosomal protein L3 N(5)-glutamine methyltransferase	NA	NA	NA	NA	NA
WP_010930546.1|1117651_1119577_+	ATP-binding cassette domain-containing protein	NA	A0A2K9L0W2	Tupanvirus	31.8	1.1e-66
WP_010926400.1|1119936_1122549_+	TonB-dependent receptor	NA	NA	NA	NA	NA
WP_003812546.1|1122601_1124902_-	UvrD-helicase domain-containing protein	NA	A7KV33	Bacillus_phage	35.9	9.9e-110
WP_003812548.1|1124898_1126107_-	fatty acid desaturase	NA	NA	NA	NA	NA
WP_010930545.1|1126368_1126743_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|1126739_1127690_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_076879626.1|1127788_1129783_-	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	33.3	4.4e-21
WP_010930543.1|1129842_1130808_+	bifunctional riboflavin kinase/FAD synthetase	NA	NA	NA	NA	NA
WP_010930542.1|1130797_1133659_+|tRNA	isoleucine--tRNA ligase	tRNA	A0A1V0SJ93	Klosneuvirus	25.5	1.0e-71
WP_010930541.1|1133661_1134168_+	lipoprotein signal peptidase	NA	NA	NA	NA	NA
WP_010930540.1|1134272_1135481_+	bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC	NA	Q9HH70	Methanothermobacter_phage	30.0	3.8e-36
WP_033446178.1|1135482_1136421_-	membrane protein	NA	NA	NA	NA	NA
WP_010930538.1|1136582_1137056_+	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012808.1|1137052_1138003_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 12
NZ_CP010266	Bordetella pertussis strain I707 chromosome, complete genome	4107557	1224180	1293405	4107557	protease,transposase	uncultured_Caudovirales_phage(11.11%)	52	NA	NA
WP_010931070.1|1224180_1225131_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003809615.1|1225432_1225909_-	transcription elongation factor GreA	NA	NA	NA	NA	NA
WP_019247142.1|1226532_1228170_+	Tar ligand binding domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	30.2	8.8e-12
WP_003809610.1|1228200_1229514_-	pyrimidine permease	NA	Q9KX94	Enterobacteria_phage	67.1	2.1e-149
WP_004568205.1|1229647_1229965_+	hypothetical protein	NA	NA	NA	NA	NA
WP_023852827.1|1230065_1231388_+	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_010929591.1|1231384_1232335_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|1232433_1233384_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930836.1|1233913_1234936_-	putative 2-aminoethylphosphonate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003820286.1|1234964_1235795_-	phosphonoacetaldehyde hydrolase	NA	NA	NA	NA	NA
WP_029443740.1|1235811_1237509_-	putative 2-aminoethylphosphonate ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_010930838.1|1237573_1238650_-	putative 2-aminoethylphosphonate ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	35.8	1.2e-28
WP_010930839.1|1238809_1239673_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930840.1|1239703_1240273_+	HD domain-containing protein	NA	NA	NA	NA	NA
WP_010930841.1|1240289_1241141_-	sulfurtransferase	NA	NA	NA	NA	NA
WP_003813142.1|1242198_1243080_+|protease	protease HtpX	protease	NA	NA	NA	NA
WP_010930842.1|1243154_1244144_-	quinone oxidoreductase	NA	NA	NA	NA	NA
WP_010930843.1|1244206_1245157_-	DMT family transporter	NA	NA	NA	NA	NA
WP_003813147.1|1245219_1246077_+	DMT family transporter	NA	NA	NA	NA	NA
WP_003813149.1|1246136_1246625_+	MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930844.1|1248197_1249388_+	efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
WP_010930845.1|1249384_1250971_+	DHA2 family efflux MFS transporter permease subunit	NA	NA	NA	NA	NA
WP_010930846.1|1250989_1252057_-	tartrate dehydrogenase	NA	NA	NA	NA	NA
WP_010930847.1|1252161_1253706_-	PLP-dependent aminotransferase family protein	NA	A0A1X9I5H2	Streptococcus_phage	25.4	3.1e-14
WP_010930848.1|1254125_1255700_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930849.1|1255807_1256824_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_003813165.1|1256820_1257660_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010930850.1|1257664_1259302_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.6	3.6e-21
WP_005013747.1|1259298_1260249_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930851.1|1260391_1261666_+	4-aminobutyrate--2-oxoglutarate transaminase	NA	A0A1V0SKB7	Klosneuvirus	27.9	1.6e-24
WP_010930852.1|1261695_1261986_+	cupin domain-containing protein	NA	NA	NA	NA	NA
WP_047122810.1|1262058_1263072_+	histone deacetylase family protein	NA	A0A2K9L4C2	Tupanvirus	35.2	1.7e-42
WP_010930854.1|1263091_1264354_+	Zn-dependent hydrolase	NA	NA	NA	NA	NA
WP_010930855.1|1264356_1265280_+	DMT family transporter	NA	NA	NA	NA	NA
WP_010930856.1|1265276_1266770_+	aldehyde dehydrogenase	NA	NA	NA	NA	NA
WP_010930857.1|1266780_1267713_-	glyoxylate/hydroxypyruvate reductase A	NA	NA	NA	NA	NA
WP_076879554.1|1267894_1269220_+	aspartate aminotransferase family protein	NA	A0A1C9EHH3	Mycobacterium_phage	22.5	1.8e-07
WP_023853659.1|1269254_1270598_-	sodium:alanine symporter family protein	NA	NA	NA	NA	NA
WP_023853666.1|1270670_1272191_-	DUF853 domain-containing protein	NA	A0A248XCZ8	Klebsiella_phage	44.9	1.7e-78
WP_010930861.1|1272345_1273077_+	YebC/PmpR family DNA-binding transcriptional regulator	NA	NA	NA	NA	NA
WP_010930862.1|1273144_1274485_+	phosphoribosylamine--glycine ligase	NA	NA	NA	NA	NA
WP_010930863.1|1274500_1275412_+	oxygen-dependent coproporphyrinogen oxidase	NA	NA	NA	NA	NA
WP_010930864.1|1275402_1275996_+	nicotinate (nicotinamide) nucleotide adenylyltransferase	NA	NA	NA	NA	NA
WP_003813196.1|1276057_1276444_+	ribosome silencing factor	NA	NA	NA	NA	NA
WP_003813199.1|1276455_1276926_+	23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH	NA	NA	NA	NA	NA
WP_010930865.1|1276937_1277561_+	septum formation inhibitor Maf	NA	NA	NA	NA	NA
WP_010930866.1|1277581_1280329_-	autotransporter Vag8	NA	NA	NA	NA	NA
WP_019248843.1|1286907_1287156_-	DUF1127 domain-containing protein	NA	NA	NA	NA	NA
WP_010930705.1|1287244_1288207_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_023853568.1|1289438_1290956_-	succinate CoA transferase	NA	NA	NA	NA	NA
WP_010926318.1|1291181_1292093_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012808.1|1292454_1293405_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 13
NZ_CP010266	Bordetella pertussis strain I707 chromosome, complete genome	4107557	1393706	1485677	4107557	tRNA,transposase	Moraxella_phage(25.0%)	60	NA	NA
WP_010929632.1|1393706_1394723_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010930633.1|1395116_1396382_-	aspartate kinase	NA	NA	NA	NA	NA
WP_010930632.1|1396481_1397447_-|tRNA	tRNA lysidine(34) synthetase TilS	tRNA	NA	NA	NA	NA
WP_023997643.1|1397576_1398527_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003810007.1|1398625_1399591_-	acetyl-CoA carboxylase carboxyltransferase subunit alpha	NA	NA	NA	NA	NA
WP_003820119.1|1399627_1400272_-	DNA-3-methyladenine glycosylase 2 family protein	NA	NA	NA	NA	NA
WP_010930630.1|1400291_1401752_-|tRNA	cysteine--tRNA ligase	tRNA	A0A2K9L6B7	Tupanvirus	27.9	2.5e-34
WP_010930629.1|1401991_1402675_+	tetratricopeptide repeat protein	NA	NA	NA	NA	NA
WP_003809999.1|1402803_1403313_+	peptidylprolyl isomerase	NA	NA	NA	NA	NA
WP_019247344.1|1403305_1404082_+	UDP-2,3-diacylglucosamine diphosphatase	NA	NA	NA	NA	NA
WP_010930627.1|1404289_1405153_-	undecaprenyl-diphosphate phosphatase	NA	NA	NA	NA	NA
WP_003809992.1|1405177_1406764_-	TerC family protein	NA	A0A0R6PEZ3	Moraxella_phage	42.0	1.9e-35
WP_010930626.1|1406890_1407673_-	inositol monophosphatase	NA	NA	NA	NA	NA
WP_010930625.1|1407780_1408557_+	RNA methyltransferase	NA	NA	NA	NA	NA
WP_010930624.1|1408774_1409767_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930623.1|1409928_1410687_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003809983.1|1410700_1411534_-	mechanosensitive ion channel	NA	NA	NA	NA	NA
WP_010930622.1|1412693_1413725_+	C45 family peptidase	NA	NA	NA	NA	NA
WP_010930621.1|1413738_1417362_-	hydantoinase B/oxoprolinase family protein	NA	NA	NA	NA	NA
WP_010930620.1|1417440_1417953_-	winged helix DNA-binding protein	NA	NA	NA	NA	NA
WP_019247163.1|1419127_1419829_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930618.1|1419849_1420815_+	TRAP transporter substrate-binding protein DctP	NA	NA	NA	NA	NA
WP_010930617.1|1420828_1421320_+	TRAP transporter small permease	NA	NA	NA	NA	NA
WP_010930616.1|1422876_1423851_+	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930615.1|1423857_1424358_+	TRAP transporter small permease	NA	NA	NA	NA	NA
WP_010930614.1|1425675_1427430_-	filamentous hemagglutinin transporter protein FhaC	NA	NA	NA	NA	NA
WP_019247160.1|1427422_1428553_-	type 1 fimbrial protein	NA	NA	NA	NA	NA
WP_010930612.1|1428533_1431155_-	fimbrial biogenesis outer membrane usher protein	NA	NA	NA	NA	NA
WP_010930611.1|1431217_1431952_-	molecular chaperone FimB	NA	NA	NA	NA	NA
WP_010930610.1|1432714_1443487_-	filamentous hemagglutinin/adhesin	NA	A0A0R6PJK4	Moraxella_phage	32.5	3.6e-29
WP_010930609.1|1443913_1444543_+	virulence factors two-component system response regulator BvgA	NA	NA	NA	NA	NA
WP_014486076.1|1444551_1448268_+	virulence factors two-component system sensor histidine kinase BvgS	NA	A0A1V0SGX0	Hokovirus	32.0	4.2e-33
WP_003816497.1|1448311_1449187_-	EAL domain-containing protein	NA	NA	NA	NA	NA
WP_010930607.1|1449320_1450115_-	putative hydro-lyase	NA	NA	NA	NA	NA
WP_010930606.1|1450172_1451522_-	amidase	NA	NA	NA	NA	NA
WP_005013747.1|1454707_1455658_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811701.1|1455774_1456494_+	FadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930605.1|1456666_1457653_+	DctP family TRAP transporter solute-binding subunit	NA	NA	NA	NA	NA
WP_010930604.1|1457653_1458136_+	TRAP transporter small permease	NA	NA	NA	NA	NA
WP_003811706.1|1458139_1459423_+	TRAP transporter large permease	NA	NA	NA	NA	NA
WP_003811709.1|1459419_1460358_+	citrate lyase subunit beta	NA	NA	NA	NA	NA
WP_010930603.1|1460354_1462064_+	thiamine pyrophosphate-binding protein	NA	A0A0P0YLY7	Yellowstone_lake_phycodnavirus	27.3	5.9e-35
WP_010930602.1|1462073_1463321_+	Zn-dependent hydrolase	NA	NA	NA	NA	NA
WP_003811716.1|1464931_1466221_-	Glu/Leu/Phe/Val dehydrogenase	NA	NA	NA	NA	NA
WP_020699606.1|1467358_1468117_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	37.9	6.7e-31
WP_010930601.1|1468793_1469537_-	glutamine ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930600.1|1469611_1470352_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930599.1|1470547_1471384_-	ankyrin repeat domain-containing protein	NA	NA	NA	NA	NA
WP_010930598.1|1471434_1472205_-	TatD family hydrolase	NA	NA	NA	NA	NA
WP_010930597.1|1472254_1473307_-	DNA polymerase III subunit delta'	NA	NA	NA	NA	NA
WP_003811733.1|1473303_1473930_-	dTMP kinase	NA	A0A1L2BX49	Bacteriophage	35.1	1.6e-22
WP_010930596.1|1473926_1474961_-	endolytic transglycosylase MltG	NA	NA	NA	NA	NA
WP_010930595.1|1475139_1476156_+	folate-binding protein YgfZ	NA	NA	NA	NA	NA
WP_005012067.1|1476254_1477205_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930797.1|1479945_1481235_-	D-amino acid dehydrogenase	NA	NA	NA	NA	NA
WP_010930798.1|1481353_1481791_-	Rrf2 family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930799.1|1481834_1483043_-	NO-inducible flavohemoprotein	NA	NA	NA	NA	NA
WP_003810867.1|1483189_1483654_+	GatB/YqeY domain-containing protein	NA	A0A0K2FLI9	Brevibacillus_phage	32.4	3.9e-05
WP_014905945.1|1483677_1484628_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|1484726_1485677_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 14
NZ_CP010266	Bordetella pertussis strain I707 chromosome, complete genome	4107557	1497057	1559598	4107557	tRNA,transposase	Pandoravirus(20.0%)	54	NA	NA
WP_004568494.1|1497057_1497564_-|tRNA	tRNA adenosine(34) deaminase TadA	tRNA	S4VYT2	Pandoravirus	38.4	3.4e-07
WP_010930513.1|1497556_1498405_-	haloacid dehalogenase-like hydrolase	NA	NA	NA	NA	NA
WP_019247780.1|1498502_1499045_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|1499088_1500039_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930511.1|1500194_1500521_-	cation:proton antiporter	NA	NA	NA	NA	NA
WP_003810975.1|1500517_1500802_-	K+/H+ antiporter subunit F	NA	NA	NA	NA	NA
WP_010930510.1|1500798_1501278_-	Na+/H+ antiporter subunit E	NA	NA	NA	NA	NA
WP_004568496.1|1501274_1502903_-	monovalent cation/H+ antiporter subunit D	NA	NA	NA	NA	NA
WP_003810969.1|1502899_1503244_-	Na+/H+ antiporter subunit C	NA	NA	NA	NA	NA
WP_010930509.1|1503243_1506177_-	monovalent cation/H+ antiporter subunit A	NA	NA	NA	NA	NA
WP_010929588.1|1507335_1508286_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811452.1|1508384_1508681_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930508.1|1508787_1509705_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930507.1|1509709_1510423_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930506.1|1510436_1511408_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019249653.1|1513127_1513508_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010930504.1|1513511_1514699_+	MFS transporter	NA	NA	NA	NA	NA
WP_170954298.1|1515122_1515860_+	arsenical resistance protein ArsH	NA	A0A2H4J5V6	uncultured_Caudovirales_phage	68.2	1.3e-87
WP_005013747.1|1516153_1517104_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019249376.1|1517100_1517529_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003811538.1|1518930_1519893_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930502.1|1520008_1520962_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930501.1|1520971_1521964_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930500.1|1522015_1522771_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930499.1|1522835_1523525_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930498.1|1523746_1524697_+	fumarylacetoacetate hydrolase family protein	NA	NA	NA	NA	NA
WP_010930497.1|1524727_1525924_+	alpha-hydroxy-acid oxidizing protein	NA	NA	NA	NA	NA
WP_019247910.1|1525914_1526694_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_019247909.1|1526806_1527733_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930494.1|1527818_1528763_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930493.1|1528740_1529610_-	TauD/TfdA family dioxygenase	NA	NA	NA	NA	NA
WP_010930492.1|1529853_1530477_+	glutathione S-transferase family protein	NA	NA	NA	NA	NA
WP_019247905.1|1530791_1531091_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_023995112.1|1531104_1534179_-	autotransporter SphB2	NA	NA	NA	NA	NA
WP_010930489.1|1534308_1534983_+	response regulator transcription factor	NA	NA	NA	NA	NA
WP_019247865.1|1534975_1536790_+	sensor histidine kinase	NA	NA	NA	NA	NA
WP_010930487.1|1536843_1537791_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|1537895_1538846_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023852967.1|1539398_1541024_-	arylsulfatase	NA	A0A2P0VMN7	Tetraselmis_virus	52.2	2.0e-149
WP_010930475.1|1541073_1542108_-	haloacid dehalogenase-like hydrolase	NA	NA	NA	NA	NA
WP_010930476.1|1542110_1543457_-	BatD family protein	NA	NA	NA	NA	NA
WP_010930477.1|1543453_1544968_-	VWA domain-containing protein	NA	NA	NA	NA	NA
WP_010930478.1|1544958_1545969_-	VWA domain-containing protein	NA	NA	NA	NA	NA
WP_010930479.1|1546442_1547384_-	DUF58 domain-containing protein	NA	NA	NA	NA	NA
WP_010930480.1|1547392_1548361_-	AAA family ATPase	NA	NA	NA	NA	NA
WP_010930481.1|1549900_1550869_+	transporter	NA	NA	NA	NA	NA
WP_010930482.1|1551046_1552036_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010926609.1|1552082_1552841_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930483.1|1553030_1553768_+	TerC family protein	NA	A0A0S4KZH7	Pseudomonas_phage	46.6	4.1e-41
WP_005012808.1|1553866_1554817_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003816696.1|1555001_1555784_+	ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	25.8	2.0e-09
WP_003810743.1|1555777_1556479_+	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
WP_003810741.1|1556718_1557321_+	TetR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005013747.1|1558647_1559598_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 15
NZ_CP010266	Bordetella pertussis strain I707 chromosome, complete genome	4107557	1598875	1665204	4107557	transposase	Ectocarpus_siliculosus_virus(11.11%)	56	NA	NA
WP_005012067.1|1598875_1599826_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930453.1|1599845_1600751_-	pirin family protein	NA	NA	NA	NA	NA
WP_003811176.1|1600828_1601527_-	pirin family protein	NA	NA	NA	NA	NA
WP_010930452.1|1601686_1602631_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930451.1|1602640_1604128_-	nitrogen regulation protein NR(I)	NA	NA	NA	NA	NA
WP_003811167.1|1604127_1605195_-	PAS domain-containing protein	NA	Q8QKV7	Ectocarpus_siliculosus_virus	23.5	1.1e-05
WP_003811164.1|1605258_1606671_-	type I glutamate--ammonia ligase	NA	NA	NA	NA	NA
WP_010930450.1|1606856_1608077_-	oxygen-independent coproporphyrinogen III oxidase-like protein	NA	NA	NA	NA	NA
WP_005012808.1|1608098_1609049_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930449.1|1609147_1609789_-	RdgB/HAM1 family non-canonical purine NTP pyrophosphatase	NA	NA	NA	NA	NA
WP_010930448.1|1609915_1611718_+	EAL domain-containing protein	NA	NA	NA	NA	NA
WP_003811152.1|1613369_1614275_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930446.1|1614456_1615833_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_003811149.1|1615999_1616740_-	ribonuclease PH	NA	NA	NA	NA	NA
WP_003811148.1|1616876_1617803_+	YicC family protein	NA	NA	NA	NA	NA
WP_010930445.1|1618075_1618231_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010926696.1|1618368_1618653_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003811138.1|1618711_1620202_-	AMP nucleosidase	NA	NA	NA	NA	NA
WP_003811137.1|1620446_1621046_+	C40 family peptidase	NA	A0A0A8WF62	Clostridium_phage	41.6	1.4e-20
WP_003811135.1|1621050_1621821_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930444.1|1622058_1622772_+	c-type cytochrome	NA	NA	NA	NA	NA
WP_010930443.1|1622768_1623686_+	c-type cytochrome	NA	NA	NA	NA	NA
WP_010930442.1|1623821_1624454_+	guanylate kinase	NA	A0A218KC48	Bacillus_phage	33.9	2.4e-13
WP_010930441.1|1624495_1624699_+	DNA-directed RNA polymerase subunit omega	NA	NA	NA	NA	NA
WP_010930440.1|1624723_1627003_+	bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase	NA	A0A1B1IUF0	uncultured_Mediterranean_phage	32.1	5.9e-06
WP_003811113.1|1627015_1627744_-	glutamine ABC transporter ATP-binding protein GlnQ	NA	G9BWD6	Planktothrix_phage	39.3	3.3e-35
WP_003811112.1|1627740_1628400_-	glutamine ABC transporter permease GlnP	NA	NA	NA	NA	NA
WP_010930439.1|1628468_1629221_-	glutamine ABC transporter substrate-binding protein GlnH	NA	NA	NA	NA	NA
WP_005012067.1|1629402_1630353_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_033446216.1|1631245_1632151_+	4-hydroxy-tetrahydrodipicolinate synthase	NA	NA	NA	NA	NA
WP_010930437.1|1632162_1633290_+	outer membrane protein assembly factor BamC	NA	NA	NA	NA	NA
WP_010930436.1|1633378_1633993_-	serotype 3 fimbrial subunit	NA	NA	NA	NA	NA
WP_010930435.1|1634651_1635839_-	cupin domain-containing protein	NA	NA	NA	NA	NA
WP_033446228.1|1635835_1638433_-	DNA mismatch repair protein MutS	NA	A0A1V0SDQ0	Indivirus	22.6	1.5e-21
WP_010930433.1|1638687_1638903_+	dodecin domain-containing protein	NA	NA	NA	NA	NA
WP_010930432.1|1639358_1639913_-	NAD(P)H-dependent oxidoreductase	NA	A0A2P0ZL82	Lactobacillus_phage	32.0	1.7e-15
WP_010930431.1|1640180_1640741_+	membrane protein	NA	NA	NA	NA	NA
WP_023853587.1|1640852_1642157_+	imelysin	NA	NA	NA	NA	NA
WP_019247498.1|1642153_1643665_+	c-type cytochrome	NA	NA	NA	NA	NA
WP_019248041.1|1643770_1644772_+	imelysin family protein	NA	NA	NA	NA	NA
WP_019249265.1|1644761_1645874_+	DUF1513 domain-containing protein	NA	NA	NA	NA	NA
WP_010929591.1|1645972_1646923_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010928449.1|1646919_1647546_-	threonylcarbamoyl-AMP synthase	NA	NA	NA	NA	NA
WP_010930427.1|1647605_1648457_+	neutral zinc metallopeptidase	NA	A0A1I9SA48	Rhodococcus_phage	35.3	7.0e-37
WP_010930426.1|1648560_1649160_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930425.1|1649156_1649921_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|1649990_1650941_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930424.1|1651039_1651648_-	recombination protein RecR	NA	NA	NA	NA	NA
WP_010930423.1|1651698_1652025_-	YbaB/EbfC family nucleoid-associated protein	NA	NA	NA	NA	NA
WP_023995689.1|1652071_1654297_-	DNA polymerase III subunit gamma/tau	NA	A0A1U9WR94	Streptococcus_virus	38.5	1.2e-43
WP_010930421.1|1654964_1658369_-	UvrD-helicase domain-containing protein	NA	NA	NA	NA	NA
WP_010930420.1|1658381_1661042_-	PD-(D/E)XK nuclease family protein	NA	NA	NA	NA	NA
WP_004568212.1|1661063_1661210_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930419.1|1661245_1662448_-	MFS transporter	NA	NA	NA	NA	NA
WP_023994932.1|1663134_1664247_+	D-alanyl-D-alanine endopeptidase	NA	NA	NA	NA	NA
WP_005012067.1|1664253_1665204_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 16
NZ_CP010266	Bordetella pertussis strain I707 chromosome, complete genome	4107557	1693249	1744421	4107557	tRNA,transposase	Salmonella_phage(20.0%)	48	NA	NA
WP_005012067.1|1693249_1694200_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812577.1|1694298_1695069_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	39.5	8.3e-29
WP_010930397.1|1695065_1695737_-	ectoine/hydroxyectoine ABC transporter permease subunit EhuD	NA	NA	NA	NA	NA
WP_003812581.1|1695733_1696375_-	ectoine/hydroxyectoine ABC transporter permease subunit EhuC	NA	NA	NA	NA	NA
WP_010930396.1|1696387_1697308_-	ectoine/hydroxyectoine ABC transporter substrate-binding protein EhuB	NA	NA	NA	NA	NA
WP_010930395.1|1697468_1698629_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930394.1|1698670_1699621_-	ornithine cyclodeaminase family protein	NA	NA	NA	NA	NA
WP_169507376.1|1700285_1700486_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930392.1|1700608_1702303_-	phosphoenolpyruvate--protein phosphotransferase	NA	NA	NA	NA	NA
WP_003812598.1|1702424_1702694_-	HPr family phosphocarrier protein	NA	NA	NA	NA	NA
WP_003812601.1|1702809_1703208_-	PTS mannose transporter subunit IIA	NA	NA	NA	NA	NA
WP_010930391.1|1703218_1704175_-	glutathione synthase	NA	NA	NA	NA	NA
WP_033446215.1|1704311_1704857_-	translation initiation factor IF-3	NA	A0A2L0UZ54	Agrobacterium_phage	29.9	9.1e-14
WP_003812608.1|1704877_1706827_-|tRNA	threonine--tRNA ligase	tRNA	A0A2K9L297	Tupanvirus	36.0	4.1e-125
WP_019248759.1|1707214_1707991_+	response regulator transcription factor	NA	NA	NA	NA	NA
WP_003812612.1|1707996_1708389_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|1708810_1709761_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930389.1|1709757_1710855_-	sensor domain-containing diguanylate cyclase	NA	A0A127AWB9	Bacillus_phage	37.3	3.5e-20
WP_076879548.1|1710886_1711837_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814009.1|1713618_1714860_-	MFS transporter	NA	NA	NA	NA	NA
WP_003814010.1|1714871_1715645_-	peroxide stress protein YaaA	NA	NA	NA	NA	NA
WP_005012067.1|1715671_1716622_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814011.1|1716720_1717503_-	3-hydroxybutyrate dehydrogenase	NA	NA	NA	NA	NA
WP_003814012.1|1717591_1718818_-	cation:proton antiporter	NA	NA	NA	NA	NA
WP_003814013.1|1719543_1720929_+	alcaligin siderophore biosynthesis protein AlcA	NA	NA	NA	NA	NA
WP_003814014.1|1720947_1721553_+	alcaligin siderophore biosynthesis protein AlcB	NA	NA	NA	NA	NA
WP_010930939.1|1721549_1723406_+	alcaligin siderophore biosynthesis protein AlcC	NA	NA	NA	NA	NA
WP_003814016.1|1723402_1724203_+	alcaligin siderophore biosynthesis protein AlcD	NA	NA	NA	NA	NA
WP_005013753.1|1724217_1725411_+	alcaligin siderophore biosynthesis protein AlcE	NA	NA	NA	NA	NA
WP_003814017.1|1725478_1726453_+	alcaligin siderophore biosynthesis transcriptional regulator AlcR	NA	NA	NA	NA	NA
WP_010930940.1|1726575_1727799_+	alcaligin siderophore export MFS transporter Bcr	NA	S4TR35	Salmonella_phage	29.4	9.8e-24
WP_010930941.1|1727909_1730114_+	TonB-dependent alcaligin siderophore receptor FauA	NA	NA	NA	NA	NA
WP_003814020.1|1730408_1731068_+	NAAT family transporter	NA	NA	NA	NA	NA
WP_019247690.1|1731075_1731282_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003814021.1|1731620_1732376_+	GGDEF domain-containing protein	NA	NA	NA	NA	NA
WP_003814022.1|1732391_1732553_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003814023.1|1732646_1733162_+	hypothetical protein	NA	T1SAR8	Salmonella_phage	44.6	5.1e-06
WP_003814024.1|1733434_1733752_+	virulence factor	NA	NA	NA	NA	NA
WP_170954289.1|1733696_1734341_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930944.1|1734466_1735822_-|tRNA	serine--tRNA ligase	tRNA	A0A1B1IVT2	uncultured_Mediterranean_phage	47.5	1.6e-83
WP_010930945.1|1735868_1737209_-	replication-associated recombination protein A	NA	G3MBE0	Bacillus_virus	38.9	1.6e-75
WP_010930946.1|1737310_1737943_-	outer membrane lipoprotein chaperone LolA	NA	NA	NA	NA	NA
WP_003814032.1|1737942_1740303_-	DNA translocase FtsK	NA	S5VNE3	Mycobacterium_phage	48.0	7.6e-81
WP_010930948.1|1740344_1741304_+	thioredoxin-disulfide reductase	NA	A0A2I2L5E1	Orpheovirus	40.2	3.1e-57
WP_010929073.1|1741290_1741977_+	Smr/MutS family protein	NA	NA	NA	NA	NA
WP_005015014.1|1741973_1742306_+	multidrug transporter	NA	NA	NA	NA	NA
WP_005012067.1|1742421_1743372_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929577.1|1743470_1744421_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 17
NZ_CP010266	Bordetella pertussis strain I707 chromosome, complete genome	4107557	1842716	1883385	4107557	tRNA,transposase	Salmonella_phage(33.33%)	42	NA	NA
WP_010929591.1|1842716_1843667_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_004567479.1|1843777_1843960_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931004.1|1844059_1844656_-	lipoprotein	NA	NA	NA	NA	NA
WP_010931005.1|1844839_1845931_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003812822.1|1846430_1846841_-	MerR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931006.1|1846899_1847241_-	integration host factor subunit alpha	NA	A0A0H3UZA0	Geobacillus_virus	42.2	2.8e-13
WP_010931007.1|1847246_1849664_-|tRNA	phenylalanine--tRNA ligase subunit beta	tRNA	NA	NA	NA	NA
WP_010926359.1|1849676_1850699_-|tRNA	phenylalanine--tRNA ligase subunit alpha	tRNA	A0A2H4UW22	Bodo_saltans_virus	38.6	1.0e-26
WP_003812832.1|1850773_1851133_-	50S ribosomal protein L20	NA	NA	NA	NA	NA
WP_003812834.1|1851148_1851346_-	50S ribosomal protein L35	NA	NA	NA	NA	NA
WP_010929584.1|1851681_1852632_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003816756.1|1852826_1853276_+	dUTP diphosphatase	NA	S4TNT3	Salmonella_phage	67.2	3.7e-45
WP_005012808.1|1853272_1854223_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931008.1|1854333_1855782_+	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
WP_010931009.1|1855896_1856178_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|1856281_1857232_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003820420.1|1857476_1858190_-	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_019247724.1|1858312_1858540_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_003816758.1|1858834_1859473_-	DedA family protein	NA	NA	NA	NA	NA
WP_010931011.1|1859581_1860616_+	metal-dependent hydrolase	NA	NA	NA	NA	NA
WP_010929591.1|1860612_1861563_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931012.1|1861978_1862503_-	DNA-binding protein	NA	J9Q7G7	Salmonella_phage	32.9	6.5e-09
WP_004567322.1|1862506_1862776_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931013.1|1862974_1864036_-	LacI family DNA-binding transcriptional regulator	NA	NA	NA	NA	NA
WP_010931014.1|1864119_1865754_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	31.1	2.9e-15
WP_010931015.1|1865755_1866559_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931016.1|1866587_1867547_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931017.1|1867550_1869065_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019248147.1|1869101_1870106_-	M20/M25/M40 family metallo-hydrolase	NA	NA	NA	NA	NA
WP_010931018.1|1870537_1871008_-	DUF1801 domain-containing protein	NA	NA	NA	NA	NA
WP_010931019.1|1871043_1871655_-	LysE family translocator	NA	NA	NA	NA	NA
WP_010931020.1|1871685_1872309_-	FMN-binding negative transcriptional regulator	NA	NA	NA	NA	NA
WP_010931021.1|1872389_1873922_+	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
WP_010931022.1|1873956_1875198_-	MFS transporter	NA	NA	NA	NA	NA
WP_010931023.1|1875241_1876273_-	alcohol dehydrogenase catalytic domain-containing protein	NA	A0A2K9L339	Tupanvirus	27.8	1.8e-26
WP_010931024.1|1876269_1877439_-	FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010931025.1|1877432_1878113_-	cupin domain-containing protein	NA	NA	NA	NA	NA
WP_010931026.1|1878274_1879117_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931027.1|1879279_1880251_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010931028.1|1880422_1881301_+	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
WP_010931029.1|1881323_1882394_-	FUSC family protein	NA	NA	NA	NA	NA
WP_005013747.1|1882434_1883385_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 18
NZ_CP010266	Bordetella pertussis strain I707 chromosome, complete genome	4107557	1938850	2011720	4107557	tRNA,transposase	Moraxella_phage(16.67%)	58	NA	NA
WP_003810909.1|1938850_1939267_-|tRNA	aminoacyl-tRNA hydrolase	tRNA	NA	NA	NA	NA
WP_010931061.1|1939377_1940010_+	7-carboxy-7-deazaguanine synthase	NA	NA	NA	NA	NA
WP_010931062.1|1940038_1940482_+	6-carboxytetrahydropterin synthase QueD	NA	NA	NA	NA	NA
WP_003810897.1|1940503_1941595_-	TRAP transporter substrate-binding protein DctP	NA	NA	NA	NA	NA
WP_010931063.1|1941649_1942450_-	aldolase	NA	NA	NA	NA	NA
WP_010931064.1|1942585_1943206_+	cupin domain-containing protein	NA	NA	NA	NA	NA
WP_010931065.1|1943345_1943819_+	MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|1944958_1945909_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931066.1|1945905_1953567_-	hemagglutinin repeat-containing protein	NA	A0A0R6PJK4	Moraxella_phage	30.9	7.3e-24
WP_010931067.1|1953807_1957854_-	phosphoribosylformylglycinamidine synthase	NA	A9YX36	Burkholderia_phage	67.4	6.3e-160
WP_003816847.1|1958166_1958748_+	TRAP transporter small permease	NA	NA	NA	NA	NA
WP_010931068.1|1958744_1960043_+	TRAP transporter large permease	NA	NA	NA	NA	NA
WP_010931069.1|1960122_1961151_+	DctP family TRAP transporter solute-binding subunit	NA	NA	NA	NA	NA
WP_010931070.1|1961411_1962362_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010927663.1|1962358_1963309_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931071.1|1963625_1964231_+	fimbrial major subunit FimX	NA	NA	NA	NA	NA
WP_010931072.1|1964284_1965598_-	phenylacetate--CoA ligase	NA	NA	NA	NA	NA
WP_003813284.1|1965672_1966143_-	hydroxyphenylacetyl-CoA thioesterase PaaI	NA	NA	NA	NA	NA
WP_010931073.1|1966142_1966931_-	2-(1,2-epoxy-1,2-dihydrophenyl)acetyl-CoA isomerase	NA	NA	NA	NA	NA
WP_010931074.1|1966941_1968594_-	phenylacetic acid degradation protein PaaN	NA	NA	NA	NA	NA
WP_010929591.1|1968681_1969632_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931075.1|1970793_1971300_-	phenylacetate-CoA oxygenase subunit PaaJ	NA	NA	NA	NA	NA
WP_003813293.1|1971296_1972061_-	phenylacetate-CoA oxygenase subunit PaaC	NA	NA	NA	NA	NA
WP_010931076.1|1972076_1972361_-	1,2-phenylacetyl-CoA epoxidase subunit B	NA	NA	NA	NA	NA
WP_003813298.1|1972425_1973415_-	1,2-phenylacetyl-CoA epoxidase subunit A	NA	NA	NA	NA	NA
WP_010931077.1|1973586_1974516_+	phenylacetic acid degradation operon negative regulatory protein PaaX	NA	NA	NA	NA	NA
WP_003813302.1|1974487_1975174_-	NAD(P)H-hydrate epimerase	NA	NA	NA	NA	NA
WP_003813303.1|1975207_1975753_-	oligoribonuclease	NA	Q8B5Y0	Diachasmimorpha_longicaudata_entomopoxvirus	37.7	2.1e-26
WP_003813306.1|1975797_1977063_+	M48 family metallopeptidase	NA	NA	NA	NA	NA
WP_003813309.1|1977059_1977962_+	ribosome small subunit-dependent GTPase A	NA	NA	NA	NA	NA
WP_019247679.1|1979143_1980088_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931079.1|1980182_1981700_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931080.1|1981741_1983370_-	gamma-glutamyltransferase	NA	NA	NA	NA	NA
WP_003811986.1|1983477_1984359_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931081.1|1987471_1987846_+	endonuclease	NA	F4YXR7	Roseobacter_phage	54.4	2.1e-25
WP_003812004.1|1987870_1988209_-	P-II family nitrogen regulator	NA	NA	NA	NA	NA
WP_010931082.1|1988252_1989887_-	NAD+ synthase	NA	A0A2L0UZF5	Agrobacterium_phage	36.6	8.3e-87
WP_010931083.1|1989925_1991272_-	mechanosensitive ion channel family protein	NA	NA	NA	NA	NA
WP_003812010.1|1991379_1992801_+	argininosuccinate lyase	NA	NA	NA	NA	NA
WP_010931084.1|1992870_1993455_-	nitroreductase	NA	NA	NA	NA	NA
WP_005012067.1|1993557_1994508_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931085.1|1994642_1995749_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010931086.1|1995759_1996857_+	GTP 3',8-cyclase MoaA	NA	NA	NA	NA	NA
WP_010931087.1|1997001_1998207_-	molybdopterin molybdotransferase MoeA	NA	NA	NA	NA	NA
WP_010931088.1|1998213_1998735_-	molybdenum cofactor biosynthesis protein B	NA	NA	NA	NA	NA
WP_010931089.1|1998731_1999223_-	molybdenum cofactor biosynthesis protein MoaE	NA	NA	NA	NA	NA
WP_003819740.1|1999219_1999471_-	MoaD/ThiS family protein	NA	NA	NA	NA	NA
WP_003819741.1|1999451_1999937_-	cyclic pyranopterin monophosphate synthase MoaC	NA	NA	NA	NA	NA
WP_010931090.1|2000072_2003534_+	DUF748 domain-containing protein	NA	NA	NA	NA	NA
WP_010931091.1|2003551_2004436_+	dienelactone hydrolase family protein	NA	NA	NA	NA	NA
WP_010931092.1|2004445_2004877_-	lipoprotein	NA	NA	NA	NA	NA
WP_003809348.1|2005123_2005627_+	peroxiredoxin	NA	M1I839	Pelagibacter_phage	44.1	1.8e-24
WP_010931094.1|2005704_2007105_+	MFS transporter	NA	NA	NA	NA	NA
WP_010931095.1|2007179_2008055_-	membrane protein	NA	NA	NA	NA	NA
WP_023853546.1|2008051_2009059_-	biotin synthase BioB	NA	NA	NA	NA	NA
WP_010931097.1|2009526_2009832_+	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
WP_003819753.1|2009922_2010513_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930525.1|2010703_2011720_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
>prophage 19
NZ_CP010266	Bordetella pertussis strain I707 chromosome, complete genome	4107557	2014863	2081674	4107557	protease,transposase	uncultured_Mediterranean_phage(28.57%)	49	NA	NA
WP_023995489.1|2014863_2015814_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|2015912_2016863_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931099.1|2016859_2017654_-	N-formylglutamate deformylase	NA	NA	NA	NA	NA
WP_010931100.1|2017685_2018390_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010931101.1|2018464_2019265_-	SURF1 family protein	NA	NA	NA	NA	NA
WP_003809276.1|2019261_2019669_-	cytochrome o ubiquinol oxidase subunit IV	NA	NA	NA	NA	NA
WP_003819722.1|2019665_2020307_-	cytochrome o ubiquinol oxidase subunit III	NA	NA	NA	NA	NA
WP_010931102.1|2020299_2022300_-	cytochrome o ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
WP_010931103.1|2023560_2024892_+	MFS transporter	NA	NA	NA	NA	NA
WP_005012067.1|2024888_2025839_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931105.1|2027545_2027812_-	accessory factor UbiK family protein	NA	NA	NA	NA	NA
WP_003812839.1|2028519_2028858_+	P-II family nitrogen regulator	NA	NA	NA	NA	NA
WP_010931107.1|2033411_2034014_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931108.1|2034110_2035400_+	MFS transporter	NA	NA	NA	NA	NA
WP_003812846.1|2035457_2036189_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	31.0	1.4e-12
WP_010931109.1|2036185_2036989_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	23.5	7.9e-14
WP_003812851.1|2036985_2038074_-	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
WP_003820410.1|2038070_2039000_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003812857.1|2039148_2040294_-	branched-chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930800.1|2040315_2041266_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931110.1|2041596_2045418_-	trifunctional transcriptional regulator/proline dehydrogenase/L-glutamate gamma-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
WP_010931111.1|2045574_2046243_-	membrane integrity-associated transporter subunit PqiC	NA	NA	NA	NA	NA
WP_014905522.1|2046247_2047921_-	MCE family protein	NA	NA	NA	NA	NA
WP_003820402.1|2047939_2049259_-	PqiA/YebS family transporter subunit	NA	NA	NA	NA	NA
WP_010931114.1|2049263_2051579_-|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	protease	A0A223W0B1	Agrobacterium_phage	41.9	4.1e-164
WP_010931115.1|2051634_2053803_-	penicillin-binding protein 1C	NA	NA	NA	NA	NA
WP_010931116.1|2053799_2058989_-	alpha-2-macroglobulin family protein	NA	NA	NA	NA	NA
WP_003820400.1|2059078_2059393_-|protease	ATP-dependent Clp protease adapter ClpS	protease	A0A1B1IT64	uncultured_Mediterranean_phage	43.8	1.2e-10
WP_003812875.1|2059620_2059866_+	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	76.6	1.3e-20
WP_003820399.1|2059960_2060479_+	DUF192 domain-containing protein	NA	A0A1B1IUW8	uncultured_Mediterranean_phage	42.2	5.1e-14
WP_010931117.1|2060578_2061784_-	3-oxoadipyl-CoA thiolase	NA	NA	NA	NA	NA
WP_019247560.1|2061899_2063297_-	chloride channel protein	NA	NA	NA	NA	NA
WP_010931119.1|2063413_2063992_-	superoxide dismutase [Fe]	NA	NA	NA	NA	NA
WP_010931120.1|2064064_2065456_-	exodeoxyribonuclease VII large subunit	NA	A0A1V0SD82	Indivirus	32.0	1.4e-29
WP_005012067.1|2065623_2066574_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812889.1|2066854_2067475_+	MotA/TolQ/ExbB proton channel family protein	NA	NA	NA	NA	NA
WP_010931122.1|2067471_2067885_+	biopolymer transporter ExbD	NA	NA	NA	NA	NA
WP_010931123.1|2067881_2068925_+	tetraacyldisaccharide 4'-kinase	NA	NA	NA	NA	NA
WP_003812895.1|2068980_2069169_+	Trm112 family protein	NA	NA	NA	NA	NA
WP_010931124.1|2069178_2069943_+	3-deoxy-manno-octulosonate cytidylyltransferase	NA	NA	NA	NA	NA
WP_010931125.1|2070033_2070690_+	adenylate kinase	NA	NA	NA	NA	NA
WP_010931126.1|2070781_2071540_+	3-hydroxyacyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_010931127.1|2071565_2073167_+	murein biosynthesis integral membrane protein MurJ	NA	NA	NA	NA	NA
WP_010931128.1|2073367_2074372_+	FecR domain-containing protein	NA	NA	NA	NA	NA
WP_003812908.1|2074472_2074736_+	30S ribosomal protein S20	NA	NA	NA	NA	NA
WP_010931129.1|2074853_2075630_-	2-dehydro-3-deoxyglucarate aldolase	NA	NA	NA	NA	NA
WP_005012067.1|2076220_2077171_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931130.1|2079554_2080667_-	Ldh family oxidoreductase	NA	NA	NA	NA	NA
WP_005012808.1|2080723_2081674_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 20
NZ_CP010266	Bordetella pertussis strain I707 chromosome, complete genome	4107557	2112060	2155751	4107557	transposase	Planktothrix_phage(33.33%)	39	NA	NA
WP_005012067.1|2112060_2113011_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023852715.1|2113131_2114028_-	inositol monophosphatase	NA	NA	NA	NA	NA
WP_003814547.1|2116305_2118531_+	glycoside hydrolase family 31 protein	NA	NA	NA	NA	NA
WP_003814544.1|2118695_2119784_+	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	36.4	8.7e-32
WP_019247918.1|2119740_2120394_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931144.1|2120441_2121239_+	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930176.1|2121770_2122721_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247277.1|2122795_2123950_+	iron-containing alcohol dehydrogenase	NA	NA	NA	NA	NA
WP_005012067.1|2124006_2124957_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814535.1|2125055_2125361_-	antibiotic biosynthesis monooxygenase	NA	NA	NA	NA	NA
WP_003820797.1|2125389_2125824_-	DUF126 domain-containing protein	NA	NA	NA	NA	NA
WP_010931147.1|2125825_2127070_-	DUF521 domain-containing protein	NA	NA	NA	NA	NA
WP_003820799.1|2127066_2127777_-	FadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_033446288.1|2127791_2128703_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931149.1|2129065_2129470_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247890.1|2129466_2129925_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_019247891.1|2129931_2130840_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_010931150.1|2130836_2131703_+	sugar ABC transporter permease	NA	NA	NA	NA	NA
WP_003814524.1|2131689_2132517_+	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
WP_003820806.1|2132527_2133655_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	32.3	1.2e-23
WP_023852748.1|2134732_2135971_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931152.1|2136012_2137275_+	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_010931153.1|2137281_2138034_+	DNA-binding protein	NA	NA	NA	NA	NA
WP_019248355.1|2138085_2138271_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003820813.1|2138546_2139011_+	redox-sensitive transcriptional activator SoxR	NA	NA	NA	NA	NA
WP_003820814.1|2139042_2139702_+	DNA-3-methyladenine glycosylase I	NA	NA	NA	NA	NA
WP_010931154.1|2139846_2141955_+	AsmA family protein	NA	NA	NA	NA	NA
WP_023852714.1|2141951_2142902_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931155.1|2143005_2143626_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931156.1|2143717_2144470_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_019248356.1|2145604_2146729_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247402.1|2146774_2147143_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|2147384_2148335_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247492.1|2149370_2149913_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|2150298_2151249_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023997028.1|2151245_2152211_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003815281.1|2152280_2153117_+	3-methyl-2-oxobutanoate hydroxymethyltransferase	NA	A0A0P0BXC9	Ostreococcus_lucimarinus_virus	33.3	1.6e-33
WP_010931158.1|2153629_2154739_+	porin	NA	NA	NA	NA	NA
WP_005012067.1|2154800_2155751_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 21
NZ_CP010266	Bordetella pertussis strain I707 chromosome, complete genome	4107557	2278334	2342169	4107557	protease,tRNA,transposase	Pseudomonas_phage(30.0%)	56	NA	NA
WP_005015810.1|2278334_2279285_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_047122802.1|2279430_2280555_-	bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD	NA	A0A2H4PQS8	Staphylococcus_phage	33.3	3.8e-38
WP_023853315.1|2280760_2281324_+	isochorismatase family protein	NA	NA	NA	NA	NA
WP_003814871.1|2282318_2282801_-	transcriptional repressor NrdR	NA	NA	NA	NA	NA
WP_003814873.1|2282958_2284206_-	serine hydroxymethyltransferase	NA	A0A219YCZ0	Aeromonas_phage	52.7	1.1e-99
WP_003820605.1|2284426_2285083_-	YbhB/YbcL family Raf kinase inhibitor-like protein	NA	NA	NA	NA	NA
WP_003814877.1|2285118_2286348_-|tRNA	tyrosine--tRNA ligase	tRNA	NA	NA	NA	NA
WP_005012067.1|2286615_2287566_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931221.1|2287657_2289073_+	peptidoglycan DD-metalloendopeptidase family protein	NA	A8ATH6	Listeria_phage	46.9	1.9e-18
WP_010931222.1|2289078_2290215_+	anhydro-N-acetylmuramic acid kinase	NA	NA	NA	NA	NA
WP_003814883.1|2290284_2290656_-	iron-sulfur cluster insertion protein ErpA	NA	A0A2H4N7M3	Lake_Baikal_phage	56.9	4.7e-30
WP_010931223.1|2290743_2291490_-	membrane protein	NA	NA	NA	NA	NA
WP_003820599.1|2291526_2292591_-	N-acetyl-gamma-glutamyl-phosphate reductase	NA	NA	NA	NA	NA
WP_010931224.1|2292779_2293172_-	30S ribosomal protein S9	NA	NA	NA	NA	NA
WP_010927106.1|2293181_2293610_-	50S ribosomal protein L13	NA	NA	NA	NA	NA
WP_004567739.1|2293905_2295003_-	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_004567741.1|2295344_2296709_-|protease	metalloprotease PmbA	protease	NA	NA	NA	NA
WP_023853313.1|2296767_2297319_+	ribosome-associated protein	NA	NA	NA	NA	NA
WP_010931226.1|2297332_2298007_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_010931227.1|2299263_2300073_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	37.9	2.6e-33
WP_010931228.1|2300075_2300912_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_003820594.1|2300926_2301619_+	cysteine hydrolase	NA	NA	NA	NA	NA
WP_003820593.1|2301630_2302020_-	VOC family protein	NA	NA	NA	NA	NA
WP_003820592.1|2302125_2303514_-	ATP-dependent RNA helicase DbpA	NA	A0A0N9Q9J4	Chrysochromulina_ericina_virus	33.5	4.6e-54
WP_010931229.1|2303630_2305127_-	membrane protein	NA	NA	NA	NA	NA
WP_010931230.1|2305423_2306098_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|2306196_2307147_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931231.1|2307143_2309603_-	bifunctional acetate--CoA ligase family protein/GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_003814917.1|2309699_2311145_+|tRNA	glutamate--tRNA ligase	tRNA	NA	NA	NA	NA
WP_010931233.1|2311148_2312336_-	MFS transporter	NA	NA	NA	NA	NA
WP_023998238.1|2312404_2312914_-	lipoprotein	NA	NA	NA	NA	NA
WP_003814925.1|2313115_2313568_-	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_192855352.1|2313540_2314107_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247415.1|2314129_2317192_+	indolepyruvate ferredoxin oxidoreductase family protein	NA	NA	NA	NA	NA
WP_010931235.1|2317497_2320425_+	ribonucleoside-diphosphate reductase subunit alpha	NA	A0A2H4P767	Pseudomonas_phage	43.9	3.4e-171
WP_003814929.1|2320446_2321643_+	ribonucleotide-diphosphate reductase subunit beta	NA	A0A2H4P762	Pseudomonas_phage	28.9	1.0e-33
WP_010931236.1|2321960_2322488_+	histone H1-like DNA-binding protein	NA	NA	NA	NA	NA
WP_010931237.1|2322626_2323202_+	YggT family protein	NA	NA	NA	NA	NA
WP_010931238.1|2323209_2324673_-	D-alanine--poly(phosphoribitol) ligase	NA	A0A2K9L3I8	Tupanvirus	25.1	7.3e-26
WP_010931239.1|2324683_2325811_-	membrane-bound O-acyltransferase	NA	A0A125RNP0	Pseudomonas_phage	30.8	3.7e-25
WP_003814941.1|2325940_2327068_-	D-alanyl-lipoteichoic acid biosynthesis protein DltD	NA	NA	NA	NA	NA
WP_003814943.1|2327093_2327333_-	acyl carrier protein	NA	NA	NA	NA	NA
WP_010931240.1|2327613_2328117_-	glycine zipper 2TM domain-containing protein	NA	NA	NA	NA	NA
WP_010931241.1|2328289_2329231_-	carbohydrate kinase family protein	NA	NA	NA	NA	NA
WP_010931242.1|2329242_2330340_-	DUF3426 domain-containing protein	NA	NA	NA	NA	NA
WP_003814951.1|2331305_2332652_-	acetyl-CoA carboxylase biotin carboxylase subunit	NA	NA	NA	NA	NA
WP_003814952.1|2332661_2333111_-	acetyl-CoA carboxylase biotin carboxyl carrier protein	NA	NA	NA	NA	NA
WP_003814953.1|2333200_2333635_-	type II 3-dehydroquinate dehydratase	NA	NA	NA	NA	NA
WP_023853327.1|2333713_2334262_-	TlpA family protein disulfide reductase	NA	NA	NA	NA	NA
WP_003814955.1|2334344_2335715_+	UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase	NA	NA	NA	NA	NA
WP_010931244.1|2335725_2336319_+	alpha/beta fold hydrolase	NA	NA	NA	NA	NA
WP_014486102.1|2336390_2338274_+	RNB domain-containing ribonuclease	NA	NA	NA	NA	NA
WP_010931246.1|2338311_2339211_+	TonB family protein	NA	NA	NA	NA	NA
WP_010931247.1|2339207_2340071_+	shikimate dehydrogenase	NA	NA	NA	NA	NA
WP_005012067.1|2340169_2341120_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|2341218_2342169_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 22
NZ_CP010266	Bordetella pertussis strain I707 chromosome, complete genome	4107557	2531169	2589413	4107557	tRNA,transposase	Planktothrix_phage(28.57%)	53	NA	NA
WP_005012067.1|2531169_2532120_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930388.1|2532599_2533256_-	phosphoribosylanthranilate isomerase	NA	NA	NA	NA	NA
WP_010930387.1|2533270_2534938_-	TRAP transporter large permease subunit	NA	NA	NA	NA	NA
WP_010930386.1|2534940_2535570_-	TRAP transporter small permease subunit	NA	NA	NA	NA	NA
WP_014486072.1|2535781_2536876_-	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930384.1|2537020_2537833_-|tRNA	tRNA pseudouridine(38-40) synthase TruA	tRNA	NA	NA	NA	NA
WP_023853502.1|2537836_2539540_-	FimV N-terminal domain protein	NA	NA	NA	NA	NA
WP_010930382.1|2539590_2540721_-	aspartate-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
WP_010930381.1|2540907_2541984_-	3-isopropylmalate dehydrogenase	NA	NA	NA	NA	NA
WP_010930380.1|2542065_2542716_-	3-isopropylmalate dehydratase small subunit	NA	NA	NA	NA	NA
WP_010930379.1|2542730_2544134_-	3-isopropylmalate dehydratase large subunit	NA	NA	NA	NA	NA
WP_004567445.1|2544417_2545236_-	substrate-binding domain-containing protein	NA	NA	NA	NA	NA
WP_010930378.1|2545232_2545937_-	phosphate ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.0	2.6e-13
WP_010930377.1|2546836_2547952_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_004567447.1|2547985_2548360_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930376.1|2548382_2549540_-	formate dehydrogenase subunit gamma	NA	NA	NA	NA	NA
WP_003812666.1|2549552_2549786_-	lipoprotein	NA	NA	NA	NA	NA
WP_019247523.1|2550420_2553390_-	formate dehydrogenase subunit alpha	NA	NA	NA	NA	NA
WP_023853518.1|2553404_2553614_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019248667.1|2553765_2554395_-	molecular chaperone TorD family protein	NA	NA	NA	NA	NA
WP_010930373.1|2554391_2556482_-	4Fe-4S binding protein	NA	NA	NA	NA	NA
WP_010930372.1|2556505_2557186_-	DUF3306 domain-containing protein	NA	NA	NA	NA	NA
WP_003820494.1|2557182_2557743_-	DUF3305 domain-containing protein	NA	NA	NA	NA	NA
WP_004567450.1|2557749_2558847_-	iron-sulfur cluster carrier protein ApbC	NA	NA	NA	NA	NA
WP_010930371.1|2558999_2559593_+	molybdenum cofactor guanylyltransferase MobA	NA	NA	NA	NA	NA
WP_010930370.1|2559589_2560882_+	molybdopterin molybdotransferase MoeA	NA	NA	NA	NA	NA
WP_003812685.1|2560895_2561438_+	molybdopterin-guanine dinucleotide biosynthesis protein B	NA	NA	NA	NA	NA
WP_010930369.1|2561447_2562284_-	M48 family metallopeptidase	NA	NA	NA	NA	NA
WP_003820487.1|2562317_2563379_-	chorismate synthase	NA	A0A291AU41	Pandoravirus	42.8	2.9e-80
WP_019247210.1|2563420_2564473_-	EAL domain-containing protein	NA	NA	NA	NA	NA
WP_019247209.1|2564488_2564791_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012808.1|2564932_2565883_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930368.1|2566061_2567756_+	iron ABC transporter permease	NA	NA	NA	NA	NA
WP_003809599.1|2567752_2568838_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	37.7	6.4e-27
WP_010930367.1|2568885_2569785_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003809593.1|2569795_2570440_+	histidine phosphatase family protein	NA	NA	NA	NA	NA
WP_010930366.1|2571461_2574704_-	carbamoyl-phosphate synthase large subunit	NA	NA	NA	NA	NA
WP_023852833.1|2574714_2575869_-	glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit	NA	R4TGJ8	Halovirus	35.4	3.3e-53
WP_010930364.1|2576095_2577058_+	transaldolase	NA	H6WFR1	Cyanophage	29.2	7.5e-11
WP_005013747.1|2577156_2578107_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930363.1|2578205_2579156_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930362.1|2579165_2579855_-	VIT family protein	NA	NA	NA	NA	NA
WP_003811741.1|2579914_2580352_-	PaaI family thioesterase	NA	NA	NA	NA	NA
WP_003811743.1|2580397_2581291_-	3-hydroxyisobutyrate dehydrogenase	NA	NA	NA	NA	NA
WP_003811746.1|2581338_2582511_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003811748.1|2582507_2583662_-	acyl-CoA dehydrogenase family protein	NA	NA	NA	NA	NA
WP_003811750.1|2583858_2584209_-	RnfH family protein	NA	NA	NA	NA	NA
WP_003811752.1|2584198_2584633_-	type II toxin-antitoxin system RatA family toxin	NA	NA	NA	NA	NA
WP_010930800.1|2584649_2585600_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811754.1|2585747_2586215_+	SsrA-binding protein SmpB	NA	W5RAM5	Staphylococcus_phage	45.1	6.2e-27
WP_010930360.1|2586195_2587353_-	GGDEF domain-containing protein	NA	A0A127AWB9	Bacillus_phage	36.2	2.3e-14
WP_003811759.1|2587418_2588345_-	paraslipin	NA	NA	NA	NA	NA
WP_005012067.1|2588462_2589413_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 23
NZ_CP010266	Bordetella pertussis strain I707 chromosome, complete genome	4107557	2631692	2698192	4107557	transposase	uncultured_Caudovirales_phage(40.0%)	56	NA	NA
WP_005012067.1|2631692_2632643_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811850.1|2633012_2633585_+	flagellar basal body-associated protein FliL	NA	NA	NA	NA	NA
WP_003811852.1|2633587_2634598_+	flagellar motor switch protein FliM	NA	NA	NA	NA	NA
WP_010930335.1|2634590_2635091_+	flagellar motor switch protein FliN	NA	NA	NA	NA	NA
WP_003811855.1|2635101_2635443_+	flagellar biosynthetic protein FliO	NA	NA	NA	NA	NA
WP_015041547.1|2635454_2636246_+	flagellar type III secretion system pore protein FliP	NA	NA	NA	NA	NA
WP_003811859.1|2636262_2636532_+	flagellar biosynthesis protein FliQ	NA	NA	NA	NA	NA
WP_010930333.1|2636554_2637343_+	flagellar biosynthetic protein FliR	NA	NA	NA	NA	NA
WP_010929632.1|2637389_2638406_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_014486070.1|2638622_2640065_-	PAS domain-containing protein	NA	A0A1B0V854	Salmonella_phage	41.8	1.0e-35
WP_010930332.1|2640243_2641863_-	Tar ligand binding domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	45.3	1.5e-08
WP_010930331.1|2641983_2643804_-	Tar ligand binding domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	52.6	6.4e-11
WP_010930330.1|2643882_2645415_-	flagellar hook-associated protein FlgL	NA	NA	NA	NA	NA
WP_010930329.1|2645448_2647095_-	flagellar hook-associated protein FlgK	NA	NA	NA	NA	NA
WP_010930328.1|2647164_2648187_-	flagellar assembly peptidoglycan hydrolase FlgJ	NA	A0A088F6W1	Sulfitobacter_phage	31.4	1.9e-12
WP_010930327.1|2648204_2649338_-	flagellar basal body P-ring protein FlgI	NA	NA	NA	NA	NA
WP_010930326.1|2649340_2650030_-	flagellar basal body L-ring protein FlgH	NA	NA	NA	NA	NA
WP_010930325.1|2650029_2650815_-	flagellar basal-body rod protein FlgG	NA	NA	NA	NA	NA
WP_003817181.1|2650858_2651623_-	flagellar basal body rod protein FlgF	NA	NA	NA	NA	NA
WP_003817180.1|2651661_2653083_-	flagellar hook-basal body complex protein	NA	NA	NA	NA	NA
WP_010930324.1|2653148_2653853_-	flagellar basal body rod modification protein FlgD	NA	NA	NA	NA	NA
WP_003817176.1|2653900_2654320_-	flagellar basal body rod protein FlgC	NA	NA	NA	NA	NA
WP_010930323.1|2654332_2654740_-	flagellar basal body rod protein FlgB	NA	NA	NA	NA	NA
WP_010930322.1|2654923_2655634_+	flagellar basal body P-ring formation protein FlgA	NA	NA	NA	NA	NA
WP_003817172.1|2655760_2656051_+	flagellar biosynthesis anti-sigma factor FlgM	NA	NA	NA	NA	NA
WP_003817170.1|2656068_2656551_+	flagellar protein FlgN	NA	NA	NA	NA	NA
WP_010930321.1|2661056_2662211_-	flagellar type III secretion system protein FlhB	NA	NA	NA	NA	NA
WP_010931363.1|2662516_2663533_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010930319.1|2663779_2664568_+	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003812020.1|2664634_2665315_+	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003812022.1|2665311_2666082_+	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	39.1	9.8e-30
WP_010930208.1|2666180_2667131_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811401.1|2667186_2668104_-	2-dehydropantoate 2-reductase	NA	NA	NA	NA	NA
WP_003811400.1|2668114_2669293_-	mandelate racemase/muconate lactonizing enzyme family protein	NA	NA	NA	NA	NA
WP_010930318.1|2669312_2670308_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003811396.1|2671896_2672505_+	3-isopropylmalate dehydratase small subunit	NA	NA	NA	NA	NA
WP_003811393.1|2672492_2673533_+	LacI family DNA-binding transcriptional regulator	NA	NA	NA	NA	NA
WP_003811391.1|2673550_2674513_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003811389.1|2674509_2675703_-	CoA transferase	NA	NA	NA	NA	NA
WP_010930317.1|2675699_2676497_-	citryl-CoA lyase	NA	NA	NA	NA	NA
WP_014486069.1|2676522_2677509_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930316.1|2677527_2679567_-	acetate--CoA ligase family protein	NA	NA	NA	NA	NA
WP_010930315.1|2679768_2680449_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930314.1|2680462_2681374_-	CoA ester lyase	NA	NA	NA	NA	NA
WP_003811381.1|2681370_2681949_-	NAD(P)H-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010930313.1|2682087_2682993_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930312.1|2683000_2686420_+	TM0106 family RecB-like putative nuclease	NA	NA	NA	NA	NA
WP_010930311.1|2686407_2689008_-	BP1344/BB2830 family autotransporter	NA	NA	NA	NA	NA
WP_003811375.1|2689963_2690596_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003811372.1|2690989_2691748_+	endonuclease/exonuclease/phosphatase family protein	NA	NA	NA	NA	NA
WP_003811370.1|2691744_2692947_+	cardiolipin synthase ClsB	NA	NA	NA	NA	NA
WP_010930208.1|2693134_2694085_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930310.1|2694992_2696138_+	DUF3182 family protein	NA	NA	NA	NA	NA
WP_019247449.1|2696124_2696880_+	alpha/beta fold hydrolase	NA	NA	NA	NA	NA
WP_003811361.1|2696996_2697176_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930208.1|2697241_2698192_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 24
NZ_CP010266	Bordetella pertussis strain I707 chromosome, complete genome	4107557	2896531	2969857	4107557	protease,tRNA,transposase	Catovirus(22.22%)	52	NA	NA
WP_010930211.1|2896531_2897887_-|tRNA	tryptophan--tRNA ligase	tRNA	NA	NA	NA	NA
WP_003813618.1|2899365_2900088_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930207.1|2900142_2901126_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_005012067.1|2901255_2902206_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003813621.1|2902202_2903105_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930206.1|2903192_2903951_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_023853245.1|2903963_2905055_-	cell division protein ZapE	NA	NA	NA	NA	NA
WP_003813626.1|2905152_2906580_-	dihydrolipoyl dehydrogenase	NA	A0A2K5B2C5	Erysipelothrix_phage	28.1	2.1e-41
WP_010930204.1|2906809_2908024_-	2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase	NA	NA	NA	NA	NA
WP_003813631.1|2908069_2910940_-	2-oxoglutarate dehydrogenase E1 component	NA	NA	NA	NA	NA
WP_010930202.1|2913350_2913839_-	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930201.1|2913964_2916661_+	alpha-ketoglutarate dehydrogenase	NA	NA	NA	NA	NA
WP_010930200.1|2916815_2919098_+	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
WP_019248935.1|2919272_2919896_+	serotype 2 fimbrial subunit	NA	NA	NA	NA	NA
WP_010930198.1|2919994_2920945_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812405.1|2920991_2921546_-	transcription elongation factor GreB	NA	NA	NA	NA	NA
WP_003816844.1|2921613_2922459_-	PHP domain-containing protein	NA	NA	NA	NA	NA
WP_019248398.1|2922528_2923497_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_023995083.1|2923496_2924360_-	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
WP_010930196.1|2927192_2931119_-	inverse autotransporter beta-barrel domain-containing protein	NA	NA	NA	NA	NA
WP_010930194.1|2931854_2935085_-	autotransporter SphB3	NA	NA	NA	NA	NA
WP_010928340.1|2935366_2936194_-	TatD family hydrolase	NA	NA	NA	NA	NA
WP_003812422.1|2936227_2936923_-	lipoprotein-releasing ABC transporter ATP-binding protein LolD	NA	G9BWD6	Planktothrix_phage	38.6	7.0e-35
WP_019247537.1|2936915_2938196_-	lipoprotein-releasing ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_010930192.1|2938205_2939183_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930191.1|2939164_2940865_+	single-stranded-DNA-specific exonuclease RecJ	NA	A7KV88	Bacillus_phage	28.3	1.3e-50
WP_010926448.1|2940967_2942071_+	peptide chain release factor 2	NA	NA	NA	NA	NA
WP_010926447.1|2942101_2942857_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930190.1|2942863_2944384_+|tRNA	lysine--tRNA ligase	tRNA	A0A1V0SAC0	Catovirus	36.0	1.2e-82
WP_010930189.1|2944426_2944729_+	membrane protein	NA	NA	NA	NA	NA
WP_003812436.1|2944725_2945358_-	TetR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930188.1|2945436_2947302_-	long-chain fatty acid--CoA ligase	NA	A0A1V0SBX8	Catovirus	23.3	9.3e-50
WP_020699602.1|2947298_2948093_-	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	23.3	1.2e-11
WP_010930186.1|2948121_2949237_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930185.1|2950141_2951020_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010930184.1|2951019_2951844_-	ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	22.7	1.0e-08
WP_010929591.1|2952011_2952962_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930183.1|2953174_2956024_+	EAL domain-containing protein	NA	NA	NA	NA	NA
WP_010930182.1|2956005_2956734_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_019248549.1|2956874_2958338_-	YdiU family protein	NA	A0A075BSJ0	Microcystis_phage	32.5	1.7e-43
WP_010930180.1|2958334_2958706_-	DUF2069 domain-containing protein	NA	NA	NA	NA	NA
WP_003812701.1|2958723_2960037_+	YihY family inner membrane protein	NA	NA	NA	NA	NA
WP_003812703.1|2960073_2960532_+	CBS domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|2960644_2961595_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930178.1|2961591_2962605_-|tRNA	tRNA dihydrouridine(20/20a) synthase DusA	tRNA	NA	NA	NA	NA
WP_003812707.1|2962744_2963731_+	homoserine kinase	NA	NA	NA	NA	NA
WP_161633091.1|2964089_2964797_-	DUF192 domain-containing protein	NA	NA	NA	NA	NA
WP_010929591.1|2965377_2966328_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003809618.1|2966479_2967082_-	YhbY family RNA-binding protein	NA	NA	NA	NA	NA
WP_010930175.1|2967100_2967733_+	RlmE family RNA methyltransferase	NA	NA	NA	NA	NA
WP_162096758.1|2967777_2968029_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930174.1|2967970_2969857_+|protease	ATP-dependent zinc metalloprotease FtsH	protease	M4QMW8	Micromonas_pusilla_virus	41.5	1.4e-109
>prophage 25
NZ_CP010266	Bordetella pertussis strain I707 chromosome, complete genome	4107557	2981582	3030253	4107557	holin,tRNA,transposase	uncultured_Mediterranean_phage(60.0%)	42	NA	NA
WP_005013747.1|2981582_2982533_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003809441.1|2982559_2983024_-	barstar family protein	NA	NA	NA	NA	NA
WP_014486065.1|2984230_2986519_-	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
WP_010930165.1|2986635_2987508_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930164.1|2987550_2988705_+	pyridoxal phosphate-dependent aminotransferase	NA	NA	NA	NA	NA
WP_010930163.1|2988739_2989570_-	lytic transglycosylase domain-containing protein	NA	NA	NA	NA	NA
WP_023853525.1|2989653_2991198_+	4-hydroxy-3-polyprenylbenzoate decarboxylase	NA	NA	NA	NA	NA
WP_010930161.1|2991240_2991600_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003819794.1|2991601_2992015_-|holin	phage holin family protein	holin	NA	NA	NA	NA
WP_003809432.1|2992055_2992373_-	DUF883 domain-containing protein	NA	NA	NA	NA	NA
WP_003809431.1|2992457_2993174_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930160.1|2993437_2994859_+	uroporphyrinogen-III C-methyltransferase	NA	NA	NA	NA	NA
WP_019248433.1|2994925_2997673_-	pertactin autotransporter	NA	NA	NA	NA	NA
WP_023853536.1|2998005_2999022_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010930157.1|2999357_2999999_-	uracil phosphoribosyltransferase	NA	NA	NA	NA	NA
WP_003809423.1|3000089_3001526_-	D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase	NA	NA	NA	NA	NA
WP_023853534.1|3001683_3002757_+|tRNA	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	tRNA	NA	NA	NA	NA
WP_010930155.1|3002753_3003890_+|tRNA	tRNA guanosine(34) transglycosylase Tgt	tRNA	A0A1B1IVQ4	uncultured_Mediterranean_phage	44.4	1.9e-85
WP_003809416.1|3004034_3004379_+	preprotein translocase subunit YajC	NA	A0A1B1IVR5	uncultured_Mediterranean_phage	40.4	1.0e-10
WP_010930154.1|3004445_3006326_+	protein translocase subunit SecD	NA	NA	NA	NA	NA
WP_003809411.1|3006375_3007311_+	protein translocase subunit SecF	NA	A0A1B1IVP7	uncultured_Mediterranean_phage	35.5	3.0e-41
WP_010931363.1|3007643_3008660_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_015041211.1|3009597_3011025_+|tRNA	tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB	tRNA	NA	NA	NA	NA
WP_010930151.1|3011021_3012044_+	PhoH family protein	NA	A0A0S0MVD6	Pseudomonas_phage	45.4	8.7e-50
WP_003809396.1|3012033_3012507_+	rRNA maturation RNase YbeY	NA	NA	NA	NA	NA
WP_010930149.1|3012647_3013535_+	CBS domain-containing protein	NA	NA	NA	NA	NA
WP_014486064.1|3013531_3015175_+	apolipoprotein N-acyltransferase	NA	NA	NA	NA	NA
WP_010930148.1|3015171_3016221_-	aldo/keto reductase	NA	NA	NA	NA	NA
WP_010931363.1|3017009_3018026_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003817162.1|3018125_3018758_-	protein phosphatase CheZ	NA	NA	NA	NA	NA
WP_003811911.1|3018766_3019156_-	chemotaxis response regulator CheY	NA	Q56AR1	Bacillus_thuringiensis_phage	33.3	5.7e-10
WP_010930146.1|3019208_3020261_-	chemotaxis response regulator protein-glutamate methylesterase	NA	NA	NA	NA	NA
WP_023995045.1|3021124_3021889_-	Tar ligand binding domain-containing protein	NA	NA	NA	NA	NA
WP_003811919.1|3021962_3022463_-	chemotaxis protein CheW	NA	NA	NA	NA	NA
WP_010930144.1|3022477_3024535_-	chemotaxis protein CheA	NA	NA	NA	NA	NA
WP_019247393.1|3024561_3024855_-	response regulator	NA	NA	NA	NA	NA
WP_003817154.1|3024956_3025904_-	flagellar motor protein MotB	NA	NA	NA	NA	NA
WP_003811927.1|3025916_3026792_-	flagellar motor stator protein MotA	NA	NA	NA	NA	NA
WP_003811929.1|3026912_3027473_-	flagellar transcriptional regulator FlhC	NA	NA	NA	NA	NA
WP_010930143.1|3027507_3027831_-	flagellar transcriptional regulator FlhD	NA	NA	NA	NA	NA
WP_003811933.1|3028266_3029004_+	RNA polymerase sigma factor FliA	NA	NA	NA	NA	NA
WP_005012067.1|3029302_3030253_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 26
NZ_CP010266	Bordetella pertussis strain I707 chromosome, complete genome	4107557	3038463	3100618	4107557	transposase	Erysipelothrix_phage(20.0%)	46	NA	NA
WP_023853531.1|3038463_3039597_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930137.1|3039700_3040342_+	glutathione transferase	NA	NA	NA	NA	NA
WP_010930136.1|3040496_3042845_+	DUF3141 domain-containing protein	NA	NA	NA	NA	NA
WP_003809454.1|3042841_3043780_+	phosphate acetyltransferase	NA	NA	NA	NA	NA
WP_010930135.1|3043805_3044996_+	acetate kinase	NA	NA	NA	NA	NA
WP_010930134.1|3044992_3045766_+	enoyl-ACP reductase FabI	NA	NA	NA	NA	NA
WP_010930133.1|3045795_3046989_-	phosphoglycerate kinase	NA	NA	NA	NA	NA
WP_010930132.1|3047106_3048117_-	type I glyceraldehyde-3-phosphate dehydrogenase	NA	NA	NA	NA	NA
WP_010930131.1|3048134_3050171_-	transketolase	NA	NA	NA	NA	NA
WP_010930130.1|3050365_3051106_+	16S rRNA (uracil(1498)-N(3))-methyltransferase	NA	NA	NA	NA	NA
WP_010929969.1|3051204_3052155_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929584.1|3052253_3053204_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003817151.1|3053246_3054422_+	FliC/FljB family flagellin	NA	NA	NA	NA	NA
WP_010930129.1|3054643_3056434_-	dihydrolipoyl dehydrogenase	NA	A0A2K5B2C5	Erysipelothrix_phage	25.2	2.4e-39
WP_010930128.1|3056446_3058108_-	dihydrolipoyllysine-residue acetyltransferase	NA	NA	NA	NA	NA
WP_010930127.1|3058120_3060826_-	pyruvate dehydrogenase (acetyl-transferring), homodimeric type	NA	NA	NA	NA	NA
WP_003817147.1|3061118_3062873_+	PAS domain S-box protein	NA	NA	NA	NA	NA
WP_010930126.1|3062869_3063496_+	response regulator transcription factor	NA	NA	NA	NA	NA
WP_003811948.1|3063492_3064344_+	bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD	NA	A0A249XZQ2	Enterococcus_phage	39.8	2.1e-33
WP_019248379.1|3064419_3066534_+	M3 family metallopeptidase	NA	NA	NA	NA	NA
WP_010930124.1|3066720_3067335_+	SCO family protein	NA	NA	NA	NA	NA
WP_010930123.1|3067480_3067732_+	GlsB/YeaQ/YmgE family stress response membrane protein	NA	NA	NA	NA	NA
WP_014486063.1|3067801_3069184_-	efflux transporter outer membrane subunit	NA	NA	NA	NA	NA
WP_010930121.1|3069180_3072360_-	efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_029443805.1|3073167_3074085_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930119.1|3074136_3074868_-	rRNA pseudouridine synthase	NA	NA	NA	NA	NA
WP_010926548.1|3074927_3075500_+	chorismate lyase	NA	NA	NA	NA	NA
WP_010929632.1|3077008_3078025_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010930118.1|3078162_3079212_-	NADP(H)-dependent aldo-keto reductase	NA	NA	NA	NA	NA
WP_005012067.1|3079316_3080267_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003813314.1|3080362_3081088_-	CoA pyrophosphatase	NA	NA	NA	NA	NA
WP_003813315.1|3081298_3081679_-	50S ribosomal protein L19	NA	NA	NA	NA	NA
WP_014905652.1|3081984_3082857_+	EamA family transporter	NA	NA	NA	NA	NA
WP_023852686.1|3082864_3083245_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023852693.1|3083398_3084673_-	PA0069 family radical SAM protein	NA	NA	NA	NA	NA
WP_010930113.1|3086160_3087069_-	sulfate adenylyltransferase subunit CysD	NA	NA	NA	NA	NA
WP_010930112.1|3087866_3088931_-	sulfate ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	30.3	3.8e-24
WP_170954292.1|3090767_3091769_-	sulfate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003813333.1|3091991_3092633_-	peroxiredoxin	NA	NA	NA	NA	NA
WP_003821527.1|3092715_3094542_-	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_010930111.1|3094785_3095715_-	electron transfer flavoprotein subunit alpha	NA	NA	NA	NA	NA
WP_010930110.1|3095714_3096464_-	electron transfer flavoprotein subunit beta/FixA family protein	NA	NA	NA	NA	NA
WP_003821521.1|3096535_3097450_-	histone deacetylase family protein	NA	A0A2K9KZC4	Tupanvirus	34.7	9.8e-45
WP_010930108.1|3097469_3098615_+	lytic murein transglycosylase B	NA	NA	NA	NA	NA
WP_014486062.1|3098675_3099587_-	cysteine synthase CysM	NA	A0A1X9I5K7	Streptococcus_phage	38.8	8.0e-47
WP_005012067.1|3099667_3100618_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 27
NZ_CP010266	Bordetella pertussis strain I707 chromosome, complete genome	4107557	3120040	3183121	4107557	holin,transposase	Bacillus_phage(25.0%)	54	NA	NA
WP_005012808.1|3120040_3120991_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_004566317.1|3121120_3121513_+	type II toxin-antitoxin system HicB family antitoxin	NA	A0A0R6PJ17	Moraxella_phage	45.0	4.8e-25
WP_003821497.1|3121789_3122701_-	LysR family transcriptional regulator	NA	Q6JIH3	Burkholderia_virus	27.6	4.4e-05
WP_010930088.1|3122825_3123800_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_005012067.1|3123796_3124747_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003810865.1|3124845_3125931_-	DNA polymerase IV	NA	NA	NA	NA	NA
WP_010930072.1|3126028_3126439_+	PaaI family thioesterase	NA	NA	NA	NA	NA
WP_003810859.1|3127054_3128968_+	S9 family peptidase	NA	NA	NA	NA	NA
WP_010930071.1|3129103_3131716_+	PBP1A family penicillin-binding protein	NA	NA	NA	NA	NA
WP_019248496.1|3131717_3132452_-	metallophosphoesterase	NA	A0A2H4J0P0	uncultured_Caudovirales_phage	49.2	1.9e-62
WP_003810851.1|3132615_3133797_+	PepSY domain-containing protein	NA	NA	NA	NA	NA
WP_003810850.1|3133793_3134006_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930069.1|3134002_3134983_-	aldo/keto reductase	NA	NA	NA	NA	NA
WP_010930068.1|3135028_3135856_-	aldo/keto reductase	NA	A0A2H4PQR8	Staphylococcus_phage	47.4	1.7e-67
WP_023852913.1|3136005_3137820_+	ABC transporter ATP-binding protein/permease	NA	W8CYL7	Bacillus_phage	27.9	5.7e-44
WP_003810840.1|3137874_3138258_+	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA	NA
WP_010930066.1|3138254_3139205_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003810839.1|3139317_3139569_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003810835.1|3140074_3141193_-	mannose-6-phosphate isomerase	NA	NA	NA	NA	NA
WP_003810832.1|3141312_3141525_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930064.1|3141684_3141906_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|3141958_3142909_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930062.1|3144085_3145456_-	acetyl-CoA carboxylase biotin carboxylase subunit	NA	NA	NA	NA	NA
WP_010930061.1|3145488_3146280_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930060.1|3146292_3147348_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_019247557.1|3147373_3148249_-	amidohydrolase	NA	NA	NA	NA	NA
WP_023852826.1|3148354_3148603_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003819989.1|3148637_3150092_-	carboxylase	NA	NA	NA	NA	NA
WP_004568140.1|3150088_3150610_-	acetyl-CoA carboxylase biotin carboxyl carrier protein	NA	NA	NA	NA	NA
WP_010930057.1|3150638_3151991_-	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_029444137.1|3152214_3155103_-	HD domain-containing protein	NA	NA	NA	NA	NA
WP_010930056.1|3157247_3158549_+	phospholipase A	NA	NA	NA	NA	NA
WP_010930055.1|3158563_3159280_-	flagellar brake protein	NA	NA	NA	NA	NA
WP_010930054.1|3159561_3160242_+	DUF3313 domain-containing protein	NA	NA	NA	NA	NA
WP_003809770.1|3160253_3160421_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023852837.1|3160529_3160676_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930052.1|3160769_3161429_-	thiopurine S-methyltransferase	NA	NA	NA	NA	NA
WP_010930051.1|3161827_3163660_+	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	26.4	1.3e-27
WP_005012067.1|3163656_3164607_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814007.1|3165770_3167486_+	acetolactate synthase 3 catalytic subunit	NA	A0A0P0CDR3	Ostreococcus_lucimarinus_virus	30.3	3.1e-60
WP_003814006.1|3167496_3167988_+	acetolactate synthase small subunit	NA	NA	NA	NA	NA
WP_010930015.1|3168060_3169077_+	ketol-acid reductoisomerase	NA	NA	NA	NA	NA
WP_003814004.1|3169244_3170024_+	CDP-diacylglycerol--serine O-phosphatidyltransferase	NA	NA	NA	NA	NA
WP_003814003.1|3170042_3170570_-	lipoprotein	NA	NA	NA	NA	NA
WP_003814002.1|3170863_3171133_+	30S ribosomal protein S15	NA	NA	NA	NA	NA
WP_003821234.1|3171223_3173383_+	polyribonucleotide nucleotidyltransferase	NA	NA	NA	NA	NA
WP_003814000.1|3173503_3174223_+	lipoprotein	NA	NA	NA	NA	NA
WP_005013747.1|3174219_3175170_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003813999.1|3175310_3176528_+	threonine ammonia-lyase	NA	NA	NA	NA	NA
WP_010930016.1|3176521_3177133_-	PIN domain-containing protein	NA	K4HZX4	Acidithiobacillus_phage	32.5	3.3e-12
WP_003813997.1|3177766_3178744_+	NAD(P)H-quinone oxidoreductase	NA	NA	NA	NA	NA
WP_003813996.1|3178887_3179634_+	triose-phosphate isomerase	NA	NA	NA	NA	NA
WP_010930017.1|3179655_3180102_+	preprotein translocase subunit SecG	NA	NA	NA	NA	NA
WP_010930018.1|3180889_3183121_+|holin	choline BCCT transporter BetT	holin	NA	NA	NA	NA
>prophage 28
NZ_CP010266	Bordetella pertussis strain I707 chromosome, complete genome	4107557	3190755	3262768	4107557	holin,transposase	Leptospira_phage(20.0%)	60	NA	NA
WP_023994644.1|3190755_3191772_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003813987.1|3191968_3192793_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_076879542.1|3192870_3193794_-	transcriptional regulator LrhA	NA	NA	NA	NA	NA
WP_010930021.1|3193964_3195116_+	cystathionine beta-lyase	NA	NA	NA	NA	NA
WP_010930022.1|3195119_3196151_+	succinylglutamate desuccinylase/aspartoacylase family protein	NA	NA	NA	NA	NA
WP_010930023.1|3196279_3197251_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003813982.1|3197275_3199360_+	rhodanese-like domain-containing protein	NA	NA	NA	NA	NA
WP_003813981.1|3199426_3200419_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930024.1|3200527_3201862_-	FAD-binding oxidoreductase	NA	NA	NA	NA	NA
WP_010930025.1|3201887_3203900_-	hydantoinase B/oxoprolinase family protein	NA	NA	NA	NA	NA
WP_023853163.1|3203896_3205945_-	hydantoinase/oxoprolinase family protein	NA	NA	NA	NA	NA
WP_010930027.1|3206048_3206696_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003813974.1|3206836_3207331_+	azurin	NA	NA	NA	NA	NA
WP_010926969.1|3207374_3208046_-	transcriptional regulator	NA	NA	NA	NA	NA
WP_010930029.1|3208060_3209554_-	efflux transporter outer membrane subunit	NA	NA	NA	NA	NA
WP_010930030.1|3209550_3212664_-	MexW/MexI family multidrug efflux RND transporter permease subunit	NA	S5VTK5	Leptospira_phage	21.5	4.5e-57
WP_010930031.1|3212676_3213783_-	efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
WP_010930032.1|3213906_3214575_-	transcriptional regulator	NA	NA	NA	NA	NA
WP_005013747.1|3214795_3215746_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003813960.1|3215828_3217787_+|holin	choline BCCT transporter BetT	holin	A0A2I7QNT1	Vibrio_phage	30.3	8.0e-28
WP_010930033.1|3217814_3218516_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019248500.1|3218662_3219478_+	diacylglycerol kinase	NA	NA	NA	NA	NA
WP_003813954.1|3219474_3220290_+	metallophosphoesterase	NA	NA	NA	NA	NA
WP_003813952.1|3220306_3221110_+	phosphatase PAP2 family protein	NA	NA	NA	NA	NA
WP_003813951.1|3221093_3221528_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003813949.1|3221524_3221959_-	PaaI family thioesterase	NA	NA	NA	NA	NA
WP_019247352.1|3221960_3222515_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929591.1|3222532_3223483_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930034.1|3223795_3224953_+	porin	NA	NA	NA	NA	NA
WP_003813943.1|3225141_3225501_+	NADH-quinone oxidoreductase subunit A	NA	NA	NA	NA	NA
WP_003813941.1|3225537_3226014_+	NADH-quinone oxidoreductase subunit B	NA	NA	NA	NA	NA
WP_010926963.1|3226088_3226712_+	NADH-quinone oxidoreductase subunit C	NA	NA	NA	NA	NA
WP_010930035.1|3226714_3227971_+	NADH-quinone oxidoreductase subunit D	NA	NA	NA	NA	NA
WP_003813932.1|3228016_3228511_+	NADH-quinone oxidoreductase subunit NuoE	NA	NA	NA	NA	NA
WP_003813930.1|3228507_3229875_+	NADH-quinone oxidoreductase subunit NuoF	NA	NA	NA	NA	NA
WP_010930036.1|3229890_3232218_+	NADH-quinone oxidoreductase subunit G	NA	NA	NA	NA	NA
WP_003813926.1|3232217_3233291_+	NADH-quinone oxidoreductase subunit NuoH	NA	NA	NA	NA	NA
WP_003813924.1|3233312_3233801_+	NADH-quinone oxidoreductase subunit NuoI	NA	NA	NA	NA	NA
WP_003813921.1|3233818_3234466_+	NADH-quinone oxidoreductase subunit J	NA	NA	NA	NA	NA
WP_003813920.1|3234462_3234771_+	NADH-quinone oxidoreductase subunit NuoK	NA	NA	NA	NA	NA
WP_010930037.1|3234788_3236801_+	NADH-quinone oxidoreductase subunit L	NA	NA	NA	NA	NA
WP_019247436.1|3236797_3238300_+	NADH-quinone oxidoreductase subunit M	NA	NA	NA	NA	NA
WP_019248505.1|3238310_3239795_+	NADH-quinone oxidoreductase subunit NuoN	NA	NA	NA	NA	NA
WP_003813915.1|3239811_3240141_+	DUF2818 family protein	NA	NA	NA	NA	NA
WP_010930039.1|3240441_3242673_+	TonB-dependent siderophore receptor	NA	NA	NA	NA	NA
WP_003813909.1|3242884_3245155_+	TonB-dependent siderophore receptor	NA	NA	NA	NA	NA
WP_010930041.1|3245267_3245786_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_010930042.1|3245795_3246572_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_003813904.1|3246568_3248359_-	acetolactate synthase large subunit	NA	A0A0P0YLY7	Yellowstone_lake_phycodnavirus	26.1	2.0e-25
WP_010930044.1|3248418_3249399_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930045.1|3249536_3250454_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930046.1|3250582_3251443_-	phosphoserine phosphatase SerB	NA	NA	NA	NA	NA
WP_010926959.1|3251478_3254934_-	transcription-repair coupling factor	NA	NA	NA	NA	NA
WP_003813895.1|3254963_3255647_+	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	NA	NA	NA	NA	NA
WP_003813893.1|3255643_3256132_+	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	NA	NA	NA	NA	NA
WP_041337087.1|3256230_3257181_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003813068.1|3257177_3258197_-	class 1 fructose-bisphosphatase	NA	A0A1V0SKX4	Klosneuvirus	35.7	1.5e-49
WP_010930049.1|3258206_3260915_-	aminopeptidase N	NA	A0A0P0IY26	Acinetobacter_phage	24.0	2.8e-15
WP_010930050.1|3261062_3261719_+	DUF4136 domain-containing protein	NA	NA	NA	NA	NA
WP_005013747.1|3261817_3262768_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 29
NZ_CP010266	Bordetella pertussis strain I707 chromosome, complete genome	4107557	3314361	3357268	4107557	transposase	Planktothrix_phage(50.0%)	34	NA	NA
WP_005012808.1|3314361_3315312_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929985.1|3315413_3315842_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010929984.1|3315914_3318110_+	DUF1156 domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|3318331_3319282_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023852739.1|3319241_3319766_-	sigma-70 family RNA polymerase sigma factor	NA	NA	NA	NA	NA
WP_003814467.1|3319897_3320869_+	FecR family protein	NA	NA	NA	NA	NA
WP_010929983.1|3320988_3323433_+	TonB-dependent siderophore receptor	NA	NA	NA	NA	NA
WP_010929982.1|3323448_3324039_-	polyisoprenoid-binding protein	NA	NA	NA	NA	NA
WP_010929591.1|3324282_3325233_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814462.1|3325390_3326656_-	saccharopine dehydrogenase family protein	NA	NA	NA	NA	NA
WP_003814461.1|3326689_3327787_-	carboxynorspermidine decarboxylase	NA	NA	NA	NA	NA
WP_005013747.1|3328441_3329392_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814459.1|3329392_3329962_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929980.1|3330029_3330845_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929979.1|3331011_3332631_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929978.1|3332709_3333651_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010929977.1|3333650_3334535_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010927038.1|3334538_3336191_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.8	6.0e-16
WP_010929976.1|3336230_3337628_+	amidase family protein	NA	NA	NA	NA	NA
WP_019247242.1|3337669_3339049_+	aminotransferase class III-fold pyridoxal phosphate-dependent enzyme	NA	NA	NA	NA	NA
WP_003814443.1|3339088_3339307_-	DUF1059 domain-containing protein	NA	NA	NA	NA	NA
WP_003814441.1|3339647_3340520_+	oxaloacetate decarboxylase	NA	NA	NA	NA	NA
WP_005012067.1|3340679_3341630_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814437.1|3342361_3342739_+	4a-hydroxytetrahydrobiopterin dehydratase	NA	NA	NA	NA	NA
WP_003814436.1|3342723_3343425_-	membrane protein	NA	NA	NA	NA	NA
WP_010931409.1|3343568_3344261_-	nucleotidyltransferase family protein	NA	NA	NA	NA	NA
WP_010931410.1|3344260_3345364_-	phosphotransferase	NA	NA	NA	NA	NA
WP_010931411.1|3345473_3347846_+	LPS-assembly protein LptD	NA	NA	NA	NA	NA
WP_010931412.1|3347842_3349402_+	chaperone SurA	NA	NA	NA	NA	NA
WP_010931413.1|3349426_3350224_+	16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA	NA	NA	NA	NA	NA
WP_010931414.1|3350255_3351401_-	glycerate kinase	NA	W6LM47	Streptococcus_phage	42.2	1.7e-41
WP_003814419.1|3351505_3352948_+	pyruvate kinase	NA	NA	NA	NA	NA
WP_010929184.1|3352950_3354180_-	spore maturation protein	NA	NA	NA	NA	NA
WP_005012808.1|3356317_3357268_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 30
NZ_CP010266	Bordetella pertussis strain I707 chromosome, complete genome	4107557	3366560	3399243	4107557	tRNA,terminase,tail,transposase	uncultured_Caudovirales_phage(21.05%)	41	NA	NA
WP_003814636.1|3366560_3368291_-|tRNA	proline--tRNA ligase	tRNA	A0A2K9L3R9	Tupanvirus	29.4	4.6e-11
WP_003814635.1|3368356_3368929_+	RNA pyrophosphohydrolase	NA	NA	NA	NA	NA
WP_010931420.1|3368909_3369596_+	response regulator	NA	NA	NA	NA	NA
WP_010931421.1|3369951_3370623_+	SOS response-associated peptidase	NA	Q5QF62	Pseudomonas_virus	39.9	4.7e-36
WP_010931422.1|3370951_3371173_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010926433.1|3371172_3371454_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931423.1|3371450_3371966_-	DUF2514 family protein	NA	NA	NA	NA	NA
WP_010931424.1|3371965_3372517_-	lysozyme	NA	NA	NA	NA	NA
WP_010931425.1|3372495_3372738_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931426.1|3372742_3373555_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010926428.1|3373554_3373818_-	hypothetical protein	NA	NA	NA	NA	NA
WP_124740660.1|3373858_3374056_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931428.1|3374036_3374453_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931429.1|3374457_3378414_-	DUF1983 domain-containing protein	NA	A0A0B5A1N2	Achromobacter_phage	40.8	3.9e-215
WP_010931430.1|3378406_3378796_-	C40 family peptidase	NA	A0A0G3EYJ9	Achromobacter_phage	50.0	3.0e-35
WP_010931431.1|3378792_3379326_-	DUF1833 family protein	NA	A5A3Q9	Burkholderia_phage	46.9	1.1e-40
WP_010931432.1|3379393_3379753_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931433.1|3379762_3382375_-|tail	phage tail tape measure protein	tail	A0A2H4J107	uncultured_Caudovirales_phage	38.6	4.9e-105
WP_010931434.1|3382400_3382691_-	DUF1799 domain-containing protein	NA	A0A2H4JBP7	uncultured_Caudovirales_phage	45.2	3.7e-14
WP_003813412.1|3382708_3383038_-|tail	phage tail assembly chaperone	tail	A0A2H4J121	uncultured_Caudovirales_phage	44.0	2.9e-15
WP_010931435.1|3383047_3383566_-|tail	phage tail protein	tail	A0A1S5R1H0	Pseudomonas_phage	38.3	5.4e-24
WP_010931436.1|3383820_3384321_-	HNH endonuclease	NA	A0A1I9SEX5	Klebsiella_phage	45.1	4.4e-31
WP_010931437.1|3384328_3384751_-	DUF4128 domain-containing protein	NA	NA	NA	NA	NA
WP_010931438.1|3384747_3385146_-	hypothetical protein	NA	I6PCW1	Cronobacter_phage	38.0	4.2e-16
WP_010931439.1|3385142_3385538_-	hypothetical protein	NA	A0A2D2W284	Stenotrophomonas_phage	35.0	7.8e-07
WP_010931440.1|3385537_3385738_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247789.1|3385739_3386222_-	hypothetical protein	NA	A0A2H4JE38	uncultured_Caudovirales_phage	37.1	1.8e-13
WP_010931442.1|3386284_3386536_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012808.1|3387210_3388161_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931443.1|3388589_3389192_-	hypothetical protein	NA	R9TF81	Synechococcus_phage	43.6	7.9e-27
WP_010931444.1|3389314_3389557_-	hypothetical protein	NA	A0A0H5AUE5	Pseudomonas_phage	53.2	5.6e-16
WP_010931445.1|3389562_3390618_-	hypothetical protein	NA	A0A0H5BBX3	Pseudomonas_phage	50.6	2.6e-97
WP_010931446.1|3390646_3392065_-	DUF4055 domain-containing protein	NA	R9TF43	Synechococcus_phage	42.1	2.2e-99
WP_010931447.1|3392067_3393345_-|terminase	terminase large subunit	terminase	A0A1B1P9C9	Acinetobacter_phage	64.7	2.4e-150
WP_019247942.1|3393331_3393817_-|transposase	transposase	transposase	C7U0W1	Enterobacteria_phage	61.5	7.3e-39
WP_077598855.1|3394456_3395407_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_161633094.1|3395663_3396353_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023853179.1|3396345_3396597_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010931451.1|3397151_3397763_+	S24 family peptidase	NA	NA	NA	NA	NA
WP_019247378.1|3397834_3398041_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|3398292_3399243_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 31
NZ_CP010266	Bordetella pertussis strain I707 chromosome, complete genome	4107557	3410462	3456781	4107557	protease,tRNA,transposase	Bacillus_phage(40.0%)	44	NA	NA
WP_010930800.1|3410462_3411413_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931467.1|3411489_3413310_+	DNA helicase RecQ	NA	L7RCS0	Acanthamoeba_polyphaga_moumouvirus	35.3	3.1e-74
WP_010931466.1|3413314_3414388_-	Holliday junction branch migration DNA helicase RuvB	NA	A0A127AWE7	Bacillus_phage	25.7	2.3e-08
WP_003814230.1|3414510_3415479_+	threo-3-hydroxy-L-aspartate ammonia-lyase	NA	NA	NA	NA	NA
WP_010927008.1|3415552_3416464_+	complex I NDUFA9 subunit family protein	NA	NA	NA	NA	NA
WP_003814226.1|3416482_3417055_-	Holliday junction branch migration protein RuvA	NA	NA	NA	NA	NA
WP_010931465.1|3417135_3417684_-	crossover junction endodeoxyribonuclease RuvC	NA	NA	NA	NA	NA
WP_010931464.1|3417683_3419273_-	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase	NA	Q58MG4	Prochlorococcus_phage	47.2	8.7e-65
WP_003814221.1|3419342_3419582_-	DNA-binding protein	NA	NA	NA	NA	NA
WP_023995141.1|3419622_3420648_-|tRNA	tRNA dihydrouridine synthase DusB	tRNA	NA	NA	NA	NA
WP_003814217.1|3420713_3421895_-	UbiH/UbiF/VisC/COQ6 family ubiquinone biosynthesis hydroxylase	NA	NA	NA	NA	NA
WP_010931463.1|3421991_3422444_+	membrane protein	NA	NA	NA	NA	NA
WP_010931462.1|3422453_3423794_-	aminopeptidase P N-terminal domain-containing protein	NA	NA	NA	NA	NA
WP_010931461.1|3424110_3425148_+	sodium:calcium antiporter	NA	NA	NA	NA	NA
WP_003814209.1|3425529_3425889_+	hypothetical protein	NA	NA	NA	NA	NA
WP_041166340.1|3425972_3426914_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_076879617.1|3426988_3427939_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814206.1|3428232_3429327_+	porin	NA	NA	NA	NA	NA
WP_003814205.1|3429408_3430290_+	cytochrome c oxidase assembly protein	NA	NA	NA	NA	NA
WP_003814203.1|3430311_3431151_-	UTP--glucose-1-phosphate uridylyltransferase GalU	NA	A0A127AW70	Bacillus_phage	48.9	1.1e-66
WP_010931459.1|3431226_3432744_+|protease	M48 family metalloprotease	protease	NA	NA	NA	NA
WP_010931458.1|3432840_3433941_-	alpha/beta fold hydrolase	NA	NA	NA	NA	NA
WP_010931457.1|3433957_3434380_-	nuclear transport factor 2 family protein	NA	NA	NA	NA	NA
WP_003814195.1|3434402_3434615_-	zinc-finger domain-containing protein	NA	NA	NA	NA	NA
WP_010931456.1|3434661_3435582_-	branched-chain amino acid transaminase	NA	NA	NA	NA	NA
WP_010931455.1|3435764_3436514_+	AzlC family ABC transporter permease	NA	NA	NA	NA	NA
WP_003814188.1|3436516_3436846_+	AzlD domain-containing protein	NA	NA	NA	NA	NA
WP_010931454.1|3437052_3438486_+	DEAD/DEAH box helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	34.4	1.5e-52
WP_003814185.1|3438497_3438881_-	thioredoxin family protein	NA	NA	NA	NA	NA
WP_010931453.1|3438942_3439743_+	EI24 domain-containing protein	NA	NA	NA	NA	NA
WP_005015810.1|3439841_3440792_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931477.1|3440847_3441660_+	competence/damage-inducible protein A	NA	NA	NA	NA	NA
WP_003814178.1|3441818_3442667_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931478.1|3442867_3447262_+	dermonecrotic toxin	NA	NA	NA	NA	NA
WP_010931479.1|3447355_3448333_-	tripartite tricarboxylate transporter substrate binding protein BugD	NA	NA	NA	NA	NA
WP_003814172.1|3448719_3449298_+	TIGR01841 family phasin	NA	NA	NA	NA	NA
WP_010931480.1|3449445_3450495_-	quinone-dependent dihydroorotate dehydrogenase	NA	NA	NA	NA	NA
WP_003814165.1|3450535_3451270_-	arginyltransferase	NA	NA	NA	NA	NA
WP_010931481.1|3452064_3452646_-	NUDIX hydrolase	NA	NA	NA	NA	NA
WP_003814158.1|3452642_3453536_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003820995.1|3453669_3454071_+	DoxX family protein	NA	NA	NA	NA	NA
WP_010927005.1|3454088_3454691_-	DUF2946 family protein	NA	NA	NA	NA	NA
WP_003814152.1|3454748_3455132_-	membrane protein	NA	NA	NA	NA	NA
WP_005012067.1|3455830_3456781_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 32
NZ_CP010266	Bordetella pertussis strain I707 chromosome, complete genome	4107557	3601461	3656435	4107557	transposase	Lake_Baikal_phage(20.0%)	44	NA	NA
WP_005012067.1|3601461_3602412_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929827.1|3602528_3603596_+	linear amide C-N hydrolase	NA	NA	NA	NA	NA
WP_019247670.1|3603671_3606800_-	Rne/Rng family ribonuclease	NA	NA	NA	NA	NA
WP_023853155.1|3607307_3608273_+	RluA family pseudouridine synthase	NA	NA	NA	NA	NA
WP_010929830.1|3608275_3608947_+	HAD family hydrolase	NA	NA	NA	NA	NA
WP_010929831.1|3609103_3610063_+	protein-methionine-sulfoxide reductase catalytic subunit MsrP	NA	NA	NA	NA	NA
WP_003821340.1|3610070_3610733_+	protein-methionine-sulfoxide reductase heme-binding subunit MsrQ	NA	NA	NA	NA	NA
WP_005013747.1|3610729_3611680_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929806.1|3611801_3613055_+	CoA transferase	NA	NA	NA	NA	NA
WP_010929805.1|3613032_3613995_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929804.1|3614126_3614621_+	MaoC family dehydratase	NA	NA	NA	NA	NA
WP_010929803.1|3614620_3615853_+	CoA transferase	NA	NA	NA	NA	NA
WP_019247316.1|3616598_3616880_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929802.1|3616866_3617853_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929801.1|3617996_3618401_+	RidA family protein	NA	NA	NA	NA	NA
WP_010929800.1|3618542_3621929_+	molybdopterin-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010929799.1|3621959_3623423_+	short-chain fatty acid transporter	NA	NA	NA	NA	NA
WP_019248869.1|3623443_3625060_+	L-glutamate gamma-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
WP_010929797.1|3625145_3625805_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929796.1|3625834_3626275_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929795.1|3626785_3626989_+	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	58.2	5.8e-14
WP_010929794.1|3627164_3628070_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929577.1|3628168_3629119_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|3629217_3630168_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814674.1|3631949_3633143_-	acetyl-CoA C-acyltransferase	NA	NA	NA	NA	NA
WP_010929793.1|3633208_3634237_-	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_019247419.1|3634263_3635436_-	acyl-CoA dehydrogenase family protein	NA	NA	NA	NA	NA
WP_003814681.1|3635561_3636539_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814685.1|3636549_3637521_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929791.1|3637587_3638373_-	crotonase/enoyl-CoA hydratase family protein	NA	NA	NA	NA	NA
WP_003814691.1|3638365_3639598_-	CoA transferase	NA	NA	NA	NA	NA
WP_003814694.1|3639793_3640549_-	TerC family protein	NA	A0A0R6PEZ3	Moraxella_phage	40.8	2.9e-42
WP_010929789.1|3640659_3641178_+	MgtC/SapB family protein	NA	G3MA03	Bacillus_virus	38.9	2.1e-12
WP_010929788.1|3642966_3644367_+	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
WP_003820700.1|3644466_3644811_+	TIGR01244 family phosphatase	NA	NA	NA	NA	NA
WP_003814701.1|3644899_3645370_+	universal stress protein	NA	NA	NA	NA	NA
WP_019247421.1|3645780_3646179_+	GTP-binding protein	NA	E4ZFJ7	Streptococcus_phage	44.3	9.0e-19
WP_010929577.1|3646310_3647261_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814730.1|3649705_3650440_+	DNA polymerase III subunit epsilon	NA	A0A1X9SH08	Bradyrhizobium_phage	43.8	1.4e-41
WP_003814728.1|3650849_3651029_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003814726.1|3651219_3652533_+	short-chain fatty acid transporter	NA	NA	NA	NA	NA
WP_010929786.1|3652548_3654060_-	TAXI family TRAP transporter solute-binding subunit	NA	NA	NA	NA	NA
WP_010929785.1|3654056_3655262_-	sodium/glutamate symporter	NA	NA	NA	NA	NA
WP_022997984.1|3655457_3656435_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 33
NZ_CP010266	Bordetella pertussis strain I707 chromosome, complete genome	4107557	3746248	3800443	4107557	protease,transposase	Paramecium_bursaria_Chlorella_virus(14.29%)	53	NA	NA
WP_005013747.1|3746248_3747199_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814960.1|3747321_3748050_+	monofunctional biosynthetic peptidoglycan transglycosylase	NA	NA	NA	NA	NA
WP_010929739.1|3748146_3749325_+	LPS export ABC transporter permease LptG	NA	NA	NA	NA	NA
WP_010929738.1|3749321_3750155_+	symmetrical bis(5'-nucleosyl)-tetraphosphatase	NA	NA	NA	NA	NA
WP_010929737.1|3750191_3750932_-	1-acyl-sn-glycerol-3-phosphate acyltransferase	NA	NA	NA	NA	NA
WP_010929736.1|3751051_3752227_-	dihydroorotase	NA	NA	NA	NA	NA
WP_003820560.1|3752223_3753177_-	aspartate carbamoyltransferase catalytic subunit	NA	A7RB08	Paramecium_bursaria_Chlorella_virus	35.8	2.5e-30
WP_010929735.1|3753190_3753592_-	Holliday junction resolvase RuvX	NA	NA	NA	NA	NA
WP_010927118.1|3753584_3754190_-	YqgE/AlgH family protein	NA	NA	NA	NA	NA
WP_003814980.1|3754277_3754442_-	rubredoxin	NA	NA	NA	NA	NA
WP_010929734.1|3754558_3755407_+	hydroxymethylpyrimidine/phosphomethylpyrimidine kinase	NA	NA	NA	NA	NA
WP_003814984.1|3755403_3756057_+	thiamine phosphate synthase	NA	NA	NA	NA	NA
WP_010929733.1|3756073_3757357_+	glutamate-1-semialdehyde 2,1-aminomutase	NA	NA	NA	NA	NA
WP_010929732.1|3757596_3759222_+	DUF342 domain-containing protein	NA	NA	NA	NA	NA
WP_003814990.1|3759315_3759717_-	RidA family protein	NA	NA	NA	NA	NA
WP_003814993.1|3759741_3760176_-	acyl-CoA thioesterase	NA	NA	NA	NA	NA
WP_003814996.1|3760177_3761827_-	AMP-binding protein	NA	A0A2H4PQU7	Staphylococcus_phage	31.2	2.6e-56
WP_010929731.1|3761867_3763037_-	acyl-CoA dehydrogenase family protein	NA	NA	NA	NA	NA
WP_010929730.1|3763039_3763903_-	enoyl-CoA hydratase family protein	NA	NA	NA	NA	NA
WP_010929729.1|3767266_3767971_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	32.2	1.1e-16
WP_003815010.1|3767964_3768759_-	ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	23.5	2.6e-09
WP_003815011.1|3768755_3769721_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003815013.1|3769724_3770645_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003815015.1|3770741_3771905_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929728.1|3772127_3773018_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003815019.1|3773021_3773525_+	MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929727.1|3773567_3774566_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930048.1|3774562_3775513_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_111735998.1|3775601_3775889_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|3776080_3777031_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_004566083.1|3777090_3777651_+	5'-3'-deoxyribonucleotidase	NA	A0A1E1EUN3	Acanthamoeba_castellanii_mimivirus	30.8	3.2e-14
WP_004566082.1|3779153_3780035_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929725.1|3780148_3781351_+	MFS transporter	NA	NA	NA	NA	NA
WP_003819105.1|3781479_3783339_-	dihydroxy-acid dehydratase	NA	NA	NA	NA	NA
WP_003819104.1|3783416_3784226_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010929724.1|3784296_3785298_+	2-isopropylmalate synthase	NA	NA	NA	NA	NA
WP_003807710.1|3785329_3786190_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010929723.1|3786389_3787394_+	alpha/beta hydrolase	NA	A0A2L2DMU8	Acanthamoeba_polyphaga_mimivirus	31.5	7.5e-30
WP_003819100.1|3787390_3788977_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003807706.1|3788985_3789912_+	glyoxylate/hydroxypyruvate reductase A	NA	NA	NA	NA	NA
WP_003807705.1|3789934_3790561_+	FMN-binding negative transcriptional regulator	NA	NA	NA	NA	NA
WP_005015810.1|3790659_3791610_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014906092.1|3791606_3792743_-	trypsin-like peptidase domain-containing protein	NA	W5SAB9	Pithovirus	31.2	1.2e-07
WP_010927226.1|3792796_3793573_+	Nif3-like dinuclear metal center hexameric protein	NA	NA	NA	NA	NA
WP_010929721.1|3793597_3794056_-	large conductance mechanosensitive channel protein MscL	NA	NA	NA	NA	NA
WP_003815815.1|3794195_3794837_+	ubiquinol-cytochrome c reductase iron-sulfur subunit	NA	NA	NA	NA	NA
WP_003815816.1|3794901_3796284_+	cytochrome bc complex cytochrome b subunit	NA	NA	NA	NA	NA
WP_019247426.1|3796303_3797158_+	cytochrome c1	NA	NA	NA	NA	NA
WP_003815819.1|3797316_3797928_+	glutathione S-transferase N-terminal domain-containing protein	NA	NA	NA	NA	NA
WP_003815821.1|3797937_3798387_+|protease	ClpXP protease specificity-enhancing factor	protease	NA	NA	NA	NA
WP_010929719.1|3798905_3799046_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929718.1|3799053_3799215_-	DUF4224 domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|3799492_3800443_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 34
NZ_CP010266	Bordetella pertussis strain I707 chromosome, complete genome	4107557	3811059	3871948	4107557	protease,tRNA,transposase	uncultured_Caudovirales_phage(33.33%)	51	NA	NA
WP_010929591.1|3811059_3812010_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929711.1|3812740_3813721_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929710.1|3813734_3814859_+	CoA transferase	NA	NA	NA	NA	NA
WP_003814321.1|3814866_3816621_-	gamma-glutamyltransferase	NA	NA	NA	NA	NA
WP_010929709.1|3816727_3817627_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814324.1|3817691_3818675_-	tripartite tricarboxylate transporter substrate binding protein BugE	NA	NA	NA	NA	NA
WP_010929708.1|3818810_3819791_+	AEC family transporter	NA	NA	NA	NA	NA
WP_010929707.1|3819807_3821199_-	class II fumarate hydratase	NA	NA	NA	NA	NA
WP_010929706.1|3821350_3821887_+|tRNA	bifunctional alanine racemase/tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE	tRNA	NA	NA	NA	NA
WP_019247543.1|3821817_3823203_+	N-acetylmuramoyl-L-alanine amidase	NA	A0A2H4JCM7	uncultured_Caudovirales_phage	30.3	4.5e-17
WP_003814332.1|3823345_3823984_-	VTT domain-containing protein	NA	NA	NA	NA	NA
WP_010929705.1|3824070_3825960_+	DNA mismatch repair endonuclease MutL	NA	A0A1B2LRQ5	Wolbachia_phage	32.8	3.3e-79
WP_003814337.1|3825956_3826898_+|tRNA	tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA	tRNA	NA	NA	NA	NA
WP_003814339.1|3827003_3828053_-	phosphoribosylformylglycinamidine cyclo-ligase	NA	Q58MH8	Prochlorococcus_phage	43.6	5.6e-68
WP_010929704.1|3828305_3829007_+	DnaA regulatory inactivator Hda	NA	NA	NA	NA	NA
WP_010929703.1|3829003_3829702_+	HAD-IB family hydrolase	NA	NA	NA	NA	NA
WP_010929702.1|3829702_3831058_+	polynucleotide adenylyltransferase PcnB	NA	A0A1B1IVF3	uncultured_Mediterranean_phage	36.8	3.4e-25
WP_010929701.1|3831054_3831546_+	2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase	NA	NA	NA	NA	NA
WP_003814351.1|3831564_3832521_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003814355.1|3833931_3836034_-	TRAP transporter large permease subunit	NA	NA	NA	NA	NA
WP_003814356.1|3836204_3837248_+	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003814358.1|3837291_3838035_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814363.1|3839056_3839467_-	carboxymuconolactone decarboxylase family protein	NA	NA	NA	NA	NA
WP_010929700.1|3840416_3841214_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930742.1|3841312_3842263_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010927663.1|3842259_3843210_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|3843296_3844247_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929681.1|3844361_3845363_-	HindIII family type II restriction endonuclease	NA	NA	NA	NA	NA
WP_010929682.1|3845453_3846020_-	preprotein translocase subunit SecD	NA	NA	NA	NA	NA
WP_010929683.1|3846338_3848252_+	phosphomethylpyrimidine synthase ThiC	NA	NA	NA	NA	NA
WP_010929684.1|3848293_3849724_-	aldehyde dehydrogenase family protein	NA	NA	NA	NA	NA
WP_019247308.1|3849836_3851249_-	FAD-binding oxidoreductase	NA	NA	NA	NA	NA
WP_003818947.1|3851265_3851961_-	FadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012808.1|3852179_3853130_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929687.1|3853154_3854054_-	virginiamycin B lyase	NA	NA	NA	NA	NA
WP_010929688.1|3854208_3854757_+	N-acetyltransferase	NA	A0A2H4J136	uncultured_Caudovirales_phage	41.7	1.2e-21
WP_010929689.1|3854795_3855515_-	7-cyano-7-deazaguanine synthase QueC	NA	A0A0A0RPC6	Escherichia_phage	43.9	8.0e-50
WP_010929690.1|3855586_3858529_+	phosphoenolpyruvate carboxylase	NA	NA	NA	NA	NA
WP_033455792.1|3859122_3861918_+|protease	serine protease autotransporter SphB1	protease	NA	NA	NA	NA
WP_010929692.1|3862375_3863308_+	3-hydroxyacyl-CoA dehydrogenase family protein	NA	NA	NA	NA	NA
WP_010929693.1|3863419_3864769_+	short-chain fatty acid transporter	NA	NA	NA	NA	NA
WP_010929694.1|3864800_3865526_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010929695.1|3865576_3866428_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929696.1|3866557_3867244_+	3-oxoacid CoA-transferase subunit A	NA	NA	NA	NA	NA
WP_003819086.1|3867243_3867888_+	CoA transferase subunit B	NA	NA	NA	NA	NA
WP_003807674.1|3867944_3868220_+	muconolactone Delta-isomerase	NA	NA	NA	NA	NA
WP_003807672.1|3868245_3868542_+	YciI family protein	NA	NA	NA	NA	NA
WP_010929697.1|3868587_3869367_+	3-oxoadipate enol-lactonase	NA	NA	NA	NA	NA
WP_023853200.1|3869372_3870413_+	cyclase family protein	NA	NA	NA	NA	NA
WP_010929699.1|3870517_3870841_-	phosphate starvation-inducible protein	NA	NA	NA	NA	NA
WP_010931070.1|3870997_3871948_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 35
NZ_CP010266	Bordetella pertussis strain I707 chromosome, complete genome	4107557	4029728	4083160	4107557	transposase	Planktothrix_phage(40.0%)	45	NA	NA
WP_010931661.1|4029728_4030679_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931662.1|4030848_4032075_+	bifunctional glutamate N-acetyltransferase/amino-acid acetyltransferase ArgJ	NA	NA	NA	NA	NA
WP_010931663.1|4032274_4033141_+	ATP-binding protein	NA	NA	NA	NA	NA
WP_003815027.1|4033133_4034096_+	Nudix family hydrolase	NA	A0A221LFJ1	Barns_Ness_breadcrumb_sponge_sobemo-like_virus	53.4	1.9e-06
WP_010927663.1|4034196_4035147_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|4035245_4036196_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929577.1|4036294_4037245_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994937.1|4037241_4038735_-	efflux transporter outer membrane subunit	NA	NA	NA	NA	NA
WP_003815032.1|4038731_4041839_-	multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_010931665.1|4041835_4044904_-	MdtB/MuxB family multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_010931666.1|4044900_4046151_-	MdtA/MuxA family multidrug efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
WP_003815038.1|4046331_4047093_-	cell division protein ZapD	NA	NA	NA	NA	NA
WP_019247320.1|4047125_4047776_-	dephospho-CoA kinase	NA	NA	NA	NA	NA
WP_003820519.1|4047778_4048618_-	prepilin peptidase	NA	NA	NA	NA	NA
WP_003815047.1|4048858_4049602_+	copper resistance protein NlpE N-terminal domain-containing protein	NA	NA	NA	NA	NA
WP_003815049.1|4049684_4050032_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003815051.1|4050129_4050972_-	pantoate--beta-alanine ligase	NA	NA	NA	NA	NA
WP_003815053.1|4051016_4051904_-	segregation/condensation protein A	NA	NA	NA	NA	NA
WP_003815055.1|4051930_4052119_-	DUF3460 family protein	NA	NA	NA	NA	NA
WP_010931669.1|4052216_4053674_+	DHA2 family efflux MFS transporter permease subunit	NA	NA	NA	NA	NA
WP_010931670.1|4053660_4055187_+	glycerol kinase GlpK	NA	NA	NA	NA	NA
WP_003815061.1|4055205_4055673_-	CopD family protein	NA	NA	NA	NA	NA
WP_010931671.1|4055672_4056695_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_169507388.1|4056815_4057535_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	39.9	4.7e-34
WP_003815066.1|4057610_4058711_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003815068.1|4058712_4059903_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003815070.1|4060022_4061039_-	amino acid ABC transporter substrate-binding protein	NA	A0A1B1IT51	uncultured_Mediterranean_phage	42.1	1.0e-71
WP_003815073.1|4061357_4062029_+	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	38.2	9.5e-29
WP_010927126.1|4062025_4062934_+	FtsX-like permease family protein	NA	NA	NA	NA	NA
WP_010931672.1|4063145_4063793_+	chemoreceptor glutamine deamidase CheD	NA	NA	NA	NA	NA
WP_010931673.1|4067644_4068721_+	A/G-specific adenine glycosylase	NA	NA	NA	NA	NA
WP_003815084.1|4068731_4069541_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003815086.1|4069630_4070404_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_010930363.1|4070586_4071537_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_077274100.1|4071425_4072448_+	CoA transferase	NA	NA	NA	NA	NA
WP_010931674.1|4072437_4073592_+	CoA transferase	NA	NA	NA	NA	NA
WP_010931675.1|4073631_4075044_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_019247370.1|4075168_4076035_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931677.1|4076036_4076861_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_023853488.1|4076857_4077619_+	nitroreductase	NA	M1I6Q5	Acanthocystis_turfacea_Chlorella_virus	31.0	2.0e-19
WP_003808010.1|4077699_4078386_-	TetR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931679.1|4078559_4079567_+	hydroxymethylglutaryl-CoA lyase	NA	NA	NA	NA	NA
WP_003819309.1|4079563_4080343_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010931680.1|4080400_4081663_+	CoA transferase	NA	NA	NA	NA	NA
WP_010929591.1|4082209_4083160_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
