The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP010264	Bordetella pertussis strain I656 chromosome, complete genome	4101762	27282	70036	4101762	tRNA,transposase	Synechococcus_phage(50.0%)	41	NA	NA
WP_010930363.1|27282_28233_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023995007.1|28314_28650_-	CoA transferase	NA	NA	NA	NA	NA
WP_010929578.1|28674_29109_-	OB-fold domain-containing protein	NA	NA	NA	NA	NA
WP_019247164.1|29141_30359_-	thiolase family protein	NA	NA	NA	NA	NA
WP_010929580.1|30364_30862_-	MaoC family dehydratase	NA	NA	NA	NA	NA
WP_019247165.1|31069_32005_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929582.1|32214_33006_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010929583.1|33048_34470_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_010929584.1|34625_35576_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814398.1|35572_36763_-	MFS transporter	NA	NA	NA	NA	NA
WP_010929585.1|37012_37924_+|tRNA	glycine--tRNA ligase subunit alpha	tRNA	NA	NA	NA	NA
WP_010929586.1|37925_40064_+|tRNA	glycine--tRNA ligase subunit beta	tRNA	NA	NA	NA	NA
WP_003814404.1|40060_40600_+	D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase	NA	NA	NA	NA	NA
WP_003814405.1|40603_41332_+	1-acyl-sn-glycerol-3-phosphate acyltransferase	NA	NA	NA	NA	NA
WP_010929587.1|41318_42212_+	M48 family metallopeptidase	NA	NA	NA	NA	NA
WP_019247766.1|42282_42678_+	lactoylglutathione lyase	NA	NA	NA	NA	NA
WP_003814412.1|42687_43218_+	peptide deformylase	NA	E3SLL2	Synechococcus_phage	35.4	3.7e-12
WP_010929588.1|43663_44614_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929589.1|45200_45749_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815265.1|45720_45957_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003815255.1|46084_46978_+	AEC family transporter	NA	NA	NA	NA	NA
WP_010929590.1|48147_49395_+	homoserine O-acetyltransferase	NA	NA	NA	NA	NA
WP_003817748.1|49391_50006_+	methionine biosynthesis protein MetW	NA	NA	NA	NA	NA
WP_005012067.1|50141_51092_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_029443813.1|51134_52391_+	muropeptide transporter	NA	NA	NA	NA	NA
WP_010929592.1|53622_54357_-	aspartate/glutamate racemase family protein	NA	NA	NA	NA	NA
WP_019247224.1|54362_54953_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.6	3.2e-20
WP_003817737.1|54977_55667_-	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_023852650.1|55663_56425_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010929594.1|56504_57404_-	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_005012808.1|57497_58448_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929595.1|59248_60475_-	type II toxin-antitoxin system HipA family toxin	NA	NA	NA	NA	NA
WP_047122776.1|60474_60888_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010929597.1|61077_62019_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019248755.1|62442_63417_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929599.1|63473_64055_-	DJ-1/PfpI family protein	NA	NA	NA	NA	NA
WP_010929600.1|64067_64370_-	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA	NA
WP_029443770.1|64488_65547_-	2Fe-2S iron-sulfur cluster binding domain-containing protein	NA	NA	NA	NA	NA
WP_019247832.1|65581_66853_-	TRAP transporter large permease	NA	NA	NA	NA	NA
WP_010929603.1|67482_68664_-	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929584.1|69085_70036_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 2
NZ_CP010264	Bordetella pertussis strain I656 chromosome, complete genome	4101762	77634	136108	4101762	tRNA,transposase	Planktothrix_phage(22.22%)	54	NA	NA
WP_005012067.1|77634_78585_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_041166334.1|78659_79604_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929608.1|79600_81475_-	O-antigen biosynthesis protein WlbL	NA	A0A2P1ELS8	Moumouvirus	26.9	2.0e-23
WP_003807102.1|82822_83527_-	O-antigen biosynthesis protein WlbI	NA	NA	NA	NA	NA
WP_010929609.1|83523_84696_-	O-antigen biosynthesis protein WlbH	NA	NA	NA	NA	NA
WP_010929610.1|84891_85485_-	O-antigen biosynthesis protein WlbG	NA	NA	NA	NA	NA
WP_010929611.1|85481_86714_-	O-antigen biosynthesis protein WlbF	NA	NA	NA	NA	NA
WP_010929612.1|86731_87991_-	O-antigen biosynthesis protein WlbE	NA	NA	NA	NA	NA
WP_010929613.1|88014_89103_-	O-antigen biosynthesis protein WlbD	NA	A0A0N9R0B2	Chrysochromulina_ericina_virus	36.3	4.8e-46
WP_010929614.1|89110_90211_-	O-antigen biosynthesis protein WlbC	NA	A0A2K9L0G1	Tupanvirus	29.7	3.3e-31
WP_003807114.1|90214_90790_-	O-antigen biosynthesis protein WlbB	NA	NA	NA	NA	NA
WP_003807115.1|90793_91846_-	O-antigen biosynthesis protein WlbA	NA	NA	NA	NA	NA
WP_010929615.1|91976_92984_+	lipopolysaccharide heptosyltransferase I	NA	NA	NA	NA	NA
WP_010929616.1|92985_94272_+	3-deoxy-D-manno-octulosonic acid transferase	NA	NA	NA	NA	NA
WP_003807124.1|94288_94444_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929617.1|94468_95272_-	type III pantothenate kinase	NA	NA	NA	NA	NA
WP_010929618.1|95268_96135_-	biotin--[acetyl-CoA-carboxylase] ligase	NA	NA	NA	NA	NA
WP_010929619.1|96209_97340_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_003807131.1|97339_98179_+	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	32.4	9.1e-21
WP_010929620.1|99111_99714_+	membrane integrity-associated transporter subunit PqiC	NA	NA	NA	NA	NA
WP_010929621.1|99743_100397_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003807138.1|100529_101786_+	D-alanyl-D-alanine carboxypeptidase	NA	B6DZZ7	Stx2-converting_phage	40.5	6.2e-66
WP_010929622.1|101833_102733_+	D-amino acid aminotransferase	NA	NA	NA	NA	NA
WP_003818417.1|102808_103084_+	YbeD family protein	NA	NA	NA	NA	NA
WP_010929623.1|103091_103754_+	lipoyl(octanoyl) transferase LipB	NA	NA	NA	NA	NA
WP_003807146.1|103815_104817_+	lipoyl synthase	NA	NA	NA	NA	NA
WP_003807148.1|104831_105380_-	dTDP-4-dehydrorhamnose 3,5-epimerase	NA	A0A291LA62	Escherichia_phage	53.4	3.7e-47
WP_010929624.1|105437_106334_-	dTDP-4-dehydrorhamnose reductase	NA	NA	NA	NA	NA
WP_010929625.1|106330_107392_-	dTDP-glucose 4,6-dehydratase	NA	A0A1D7XFE8	Escherichia_phage	44.8	1.6e-78
WP_010929626.1|107427_108378_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929627.1|109277_110471_+	cystathionine beta-lyase	NA	NA	NA	NA	NA
WP_010929628.1|110552_111182_-	thiol:disulfide interchange protein DsbA/DsbL	NA	NA	NA	NA	NA
WP_010927242.1|111243_111927_-	SPOR domain-containing protein	NA	NA	NA	NA	NA
WP_023853376.1|111936_113619_-|tRNA	arginine--tRNA ligase	tRNA	NA	NA	NA	NA
WP_003815933.1|113906_114254_+	DUF1840 domain-containing protein	NA	NA	NA	NA	NA
WP_003815930.1|114344_114662_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931363.1|114944_115961_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003815929.1|116036_116837_-	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
WP_003815927.1|116833_117709_-	sugar ABC transporter permease	NA	NA	NA	NA	NA
WP_010929633.1|117719_119012_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929634.1|119054_120095_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.7	6.0e-22
WP_010929635.1|120200_121022_-	phosphodiesterase	NA	NA	NA	NA	NA
WP_005012067.1|121122_122073_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014905488.1|122171_123077_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	31.7	9.8e-21
WP_003815918.1|123073_123907_-	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_010929637.1|124743_125754_-	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_019247800.1|125750_126140_-	substrate-binding domain-containing protein	NA	NA	NA	NA	NA
WP_010929638.1|127033_128287_+	amidase	NA	NA	NA	NA	NA
WP_010929639.1|128377_130078_-	2-isopropylmalate synthase	NA	NA	NA	NA	NA
WP_010929640.1|130504_131152_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023853393.1|131150_132590_+	RNA polymerase factor sigma-54	NA	NA	NA	NA	NA
WP_003815905.1|132682_132985_+	bacterioferritin-associated ferredoxin	NA	NA	NA	NA	NA
WP_010929512.1|133012_133891_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|135157_136108_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 3
NZ_CP010264	Bordetella pertussis strain I656 chromosome, complete genome	4101762	164893	225404	4101762	tRNA,protease,transposase	Diachasmimorpha_longicaudata_entomopoxvirus(11.11%)	51	NA	NA
WP_005015810.1|164893_165844_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929659.1|167287_168190_-	YgcG family protein	NA	NA	NA	NA	NA
WP_003815889.1|168167_168797_-	LemA family protein	NA	NA	NA	NA	NA
WP_010929660.1|169079_170510_+	DEAD/DEAH box helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	29.8	5.8e-44
WP_010929661.1|170543_171173_+	LysE family transporter	NA	NA	NA	NA	NA
WP_003815895.1|171221_172829_+	peptide chain release factor 3	NA	A0A2K9L6L3	Tupanvirus	37.8	9.3e-14
WP_010929663.1|172853_173537_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815898.1|173618_174095_-	bacterioferritin	NA	NA	NA	NA	NA
WP_010929591.1|174301_175252_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929664.1|176367_176895_+	META domain-containing protein	NA	NA	NA	NA	NA
WP_010929665.1|176986_177802_+	META and DUF4377 domain-containing protein	NA	NA	NA	NA	NA
WP_003808370.1|177862_178597_+	sulfurtransferase	NA	NA	NA	NA	NA
WP_010929666.1|178634_180713_-|tRNA	methionine--tRNA ligase	tRNA	A0A1V0SHR2	Klosneuvirus	23.6	1.5e-27
WP_003808374.1|180962_181235_-	hypothetical protein	NA	NA	NA	NA	NA
WP_033446322.1|181336_182422_+	iron-sulfur cluster carrier protein ApbC	NA	NA	NA	NA	NA
WP_010929668.1|182425_184330_+	BamA/TamA family outer membrane protein	NA	NA	NA	NA	NA
WP_014486044.1|184326_188001_+	translocation/assembly module TamB domain-containing protein	NA	NA	NA	NA	NA
WP_010929670.1|188061_188625_+	dCTP deaminase	NA	S5VM63	Pseudomonas_phage	75.3	2.6e-72
WP_003808385.1|188632_189055_-	VOC family protein	NA	NA	NA	NA	NA
WP_010929671.1|189082_189502_-	VOC family protein	NA	NA	NA	NA	NA
WP_076879599.1|189530_190004_-	GNAT family N-acetyltransferase	NA	Q9AZG4	Lactococcus_phage	31.1	2.2e-11
WP_003808391.1|190103_190601_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003808393.1|190755_193026_+	arginine/lysine/ornithine decarboxylase	NA	NA	NA	NA	NA
WP_010929672.1|193074_194307_+	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010929591.1|194405_195356_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929673.1|195458_196094_+	superoxide dismutase	NA	Q56AR7	Bacillus_thuringiensis_phage	73.8	2.8e-83
WP_019248671.1|196090_196984_+	ZIP family metal transporter	NA	NA	NA	NA	NA
WP_010929675.1|197378_198479_+	glycine cleavage system aminomethyltransferase GcvT	NA	NA	NA	NA	NA
WP_010929676.1|198560_198935_+	glycine cleavage system protein GcvH	NA	NA	NA	NA	NA
WP_010929677.1|198994_201859_+	aminomethyl-transferring glycine dehydrogenase	NA	E3SN07	Prochlorococcus_phage	51.4	1.2e-261
WP_010929678.1|202003_202744_-	FadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929679.1|202813_204025_+	CoA transferase	NA	NA	NA	NA	NA
WP_010929680.1|204053_205022_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931070.1|205635_206586_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929699.1|206742_207066_+	phosphate starvation-inducible protein	NA	NA	NA	NA	NA
WP_023853200.1|207170_208211_-	cyclase family protein	NA	NA	NA	NA	NA
WP_010929697.1|208216_208996_-	3-oxoadipate enol-lactonase	NA	NA	NA	NA	NA
WP_003807672.1|209041_209338_-	YciI family protein	NA	NA	NA	NA	NA
WP_003807674.1|209363_209639_-	muconolactone Delta-isomerase	NA	NA	NA	NA	NA
WP_003819086.1|209695_210340_-	CoA transferase subunit B	NA	NA	NA	NA	NA
WP_010929696.1|210339_211026_-	3-oxoacid CoA-transferase subunit A	NA	NA	NA	NA	NA
WP_010929695.1|211155_212007_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929694.1|212057_212783_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010929693.1|212814_214164_-	short-chain fatty acid transporter	NA	NA	NA	NA	NA
WP_010929692.1|214275_215208_-	3-hydroxyacyl-CoA dehydrogenase family protein	NA	NA	NA	NA	NA
WP_033455792.1|215665_218461_-|protease	serine protease autotransporter SphB1	protease	NA	NA	NA	NA
WP_010929690.1|219054_221997_-	phosphoenolpyruvate carboxylase	NA	NA	NA	NA	NA
WP_010929689.1|222068_222788_+	7-cyano-7-deazaguanine synthase QueC	NA	A0A0A0RPC6	Escherichia_phage	43.9	8.0e-50
WP_010929688.1|222826_223375_-	N-acetyltransferase	NA	A0A2H4J136	uncultured_Caudovirales_phage	41.7	1.2e-21
WP_010929687.1|223529_224429_+	virginiamycin B lyase	NA	NA	NA	NA	NA
WP_005012808.1|224453_225404_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 4
NZ_CP010264	Bordetella pertussis strain I656 chromosome, complete genome	4101762	233336	286924	4101762	tRNA,protease,transposase	Bacillus_phage(25.0%)	47	NA	NA
WP_005012067.1|233336_234287_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010927663.1|234373_235324_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|235320_236271_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929700.1|236369_237167_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_003814363.1|238116_238527_+	carboxymuconolactone decarboxylase family protein	NA	NA	NA	NA	NA
WP_003814358.1|239548_240292_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814356.1|240335_241379_-	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003814355.1|241549_243652_+	TRAP transporter large permease subunit	NA	NA	NA	NA	NA
WP_003814351.1|245062_246019_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929701.1|246037_246529_-	2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase	NA	NA	NA	NA	NA
WP_010929702.1|246525_247881_-	polynucleotide adenylyltransferase PcnB	NA	A0A1B1IVF3	uncultured_Mediterranean_phage	36.8	3.4e-25
WP_010929703.1|247881_248580_-	HAD-IB family hydrolase	NA	NA	NA	NA	NA
WP_010929704.1|248576_249278_-	DnaA regulatory inactivator Hda	NA	NA	NA	NA	NA
WP_003814339.1|249530_250580_+	phosphoribosylformylglycinamidine cyclo-ligase	NA	Q58MH8	Prochlorococcus_phage	43.6	5.6e-68
WP_003814337.1|250685_251627_-|tRNA	tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA	tRNA	NA	NA	NA	NA
WP_010929705.1|251623_253513_-	DNA mismatch repair endonuclease MutL	NA	A0A1B2LRQ5	Wolbachia_phage	32.8	3.3e-79
WP_003814332.1|253599_254238_+	VTT domain-containing protein	NA	NA	NA	NA	NA
WP_019247543.1|254380_255766_-	N-acetylmuramoyl-L-alanine amidase	NA	A0A2H4JCM7	uncultured_Caudovirales_phage	30.3	4.5e-17
WP_010929706.1|255696_256233_-|tRNA	bifunctional alanine racemase/tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE	tRNA	NA	NA	NA	NA
WP_010929707.1|256384_257776_+	class II fumarate hydratase	NA	NA	NA	NA	NA
WP_010929708.1|257792_258773_-	AEC family transporter	NA	NA	NA	NA	NA
WP_003814324.1|258908_259892_+	tripartite tricarboxylate transporter substrate binding protein BugE	NA	NA	NA	NA	NA
WP_010929709.1|259956_260856_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814321.1|260962_262717_+	gamma-glutamyltransferase	NA	NA	NA	NA	NA
WP_010929710.1|262724_263849_-	CoA transferase	NA	NA	NA	NA	NA
WP_010929711.1|263862_264843_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_005012067.1|265573_266524_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929712.1|267083_267629_+	GbsR/MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929713.1|267712_269332_+	cytochrome d ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
WP_004567834.1|269347_270502_+	cytochrome d ubiquinol oxidase subunit II	NA	NA	NA	NA	NA
WP_003817696.1|270515_270641_+	cytochrome bd-I oxidase subunit CydX	NA	NA	NA	NA	NA
WP_010929714.1|270637_272389_+	thiol reductant ABC exporter subunit CydD	NA	W8CYL7	Bacillus_phage	23.8	3.4e-09
WP_010929715.1|272385_274065_+	thiol reductant ABC exporter subunit CydC	NA	W8CYL7	Bacillus_phage	27.6	3.6e-16
WP_010929716.1|274127_274676_+	adenine phosphoribosyltransferase	NA	A0A1V0SKE5	Klosneuvirus	43.1	1.3e-28
WP_010929717.1|275818_276097_+	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|277140_278091_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929718.1|278368_278530_+	DUF4224 domain-containing protein	NA	NA	NA	NA	NA
WP_010929719.1|278537_278678_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815821.1|279196_279646_-|protease	ClpXP protease specificity-enhancing factor	protease	NA	NA	NA	NA
WP_003815819.1|279655_280267_-	glutathione S-transferase N-terminal domain-containing protein	NA	NA	NA	NA	NA
WP_019247426.1|280425_281280_-	cytochrome c1	NA	NA	NA	NA	NA
WP_003815816.1|281299_282682_-	cytochrome bc complex cytochrome b subunit	NA	NA	NA	NA	NA
WP_003815815.1|282746_283388_-	ubiquinol-cytochrome c reductase iron-sulfur subunit	NA	NA	NA	NA	NA
WP_010929721.1|283527_283986_+	large conductance mechanosensitive channel protein MscL	NA	NA	NA	NA	NA
WP_010927226.1|284010_284787_-	Nif3-like dinuclear metal center hexameric protein	NA	NA	NA	NA	NA
WP_014906092.1|284840_285977_+	trypsin-like peptidase domain-containing protein	NA	W5SAB9	Pithovirus	31.2	1.2e-07
WP_005015810.1|285973_286924_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 5
NZ_CP010264	Bordetella pertussis strain I656 chromosome, complete genome	4101762	390857	448366	4101762	transposase	Orpheovirus(14.29%)	50	NA	NA
WP_005012067.1|390857_391808_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010927231.1|391944_392862_+	reductase	NA	NA	NA	NA	NA
WP_003815842.1|392858_393107_+	glutaredoxin family protein	NA	NA	NA	NA	NA
WP_003815840.1|393103_394309_+	CoA transferase	NA	NA	NA	NA	NA
WP_014486045.1|394381_395377_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_014486046.1|395399_396620_-	CoA transferase	NA	NA	NA	NA	NA
WP_014486047.1|396616_397261_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019248476.1|398991_399801_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_014486048.1|400105_401059_+	thioredoxin-disulfide reductase	NA	A0A2I2L5E1	Orpheovirus	42.5	5.6e-59
WP_014486049.1|401157_402141_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014486050.1|402067_402769_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_014486051.1|402817_403588_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_019247259.1|403584_404763_-	CoA transferase	NA	NA	NA	NA	NA
WP_014486052.1|404930_406637_-	thiamine pyrophosphate-requiring protein	NA	NA	NA	NA	NA
WP_014486053.1|406633_407530_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_014486054.1|407570_409160_-	rhodanese homology domain-containing protein	NA	NA	NA	NA	NA
WP_003807867.1|409209_410202_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003807865.1|410270_410870_-	hypothetical protein	NA	NA	NA	NA	NA
WP_014486055.1|411330_412311_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929577.1|412386_413337_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_047122777.1|413425_414340_+	DMT family transporter	NA	NA	NA	NA	NA
WP_010929782.1|414336_414996_+	LysE family translocator	NA	NA	NA	NA	NA
WP_003814709.1|415085_416009_+	alpha/beta fold hydrolase	NA	A0A1C9C5K3	Heterosigma_akashiwo_virus	27.2	4.8e-07
WP_010929783.1|416014_416470_-	multidrug/biocide efflux PACE transporter	NA	NA	NA	NA	NA
WP_010929784.1|416466_417570_-	ChbG/HpnK family deacetylase	NA	NA	NA	NA	NA
WP_157734656.1|417528_417798_+	GtrA family protein	NA	NA	NA	NA	NA
WP_010927086.1|417757_419377_-	glycosyltransferase family 39 protein	NA	NA	NA	NA	NA
WP_003814720.1|419373_420432_-	glycosyltransferase family 2 protein	NA	I1TED8	Salmonella_phage	40.5	2.8e-59
WP_033446199.1|420561_421056_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_022997984.1|421148_422126_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929785.1|422321_423527_+	sodium/glutamate symporter	NA	NA	NA	NA	NA
WP_010929786.1|423523_425035_+	TAXI family TRAP transporter solute-binding subunit	NA	NA	NA	NA	NA
WP_003814726.1|425050_426364_-	short-chain fatty acid transporter	NA	NA	NA	NA	NA
WP_003814728.1|426554_426734_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003814730.1|427143_427878_-	DNA polymerase III subunit epsilon	NA	A0A1X9SH08	Bradyrhizobium_phage	43.8	1.4e-41
WP_010929577.1|430322_431273_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247421.1|431404_431803_-	GTP-binding protein	NA	E4ZFJ7	Streptococcus_phage	44.3	9.0e-19
WP_003814701.1|432213_432684_-	universal stress protein	NA	NA	NA	NA	NA
WP_003820700.1|432772_433117_-	TIGR01244 family phosphatase	NA	NA	NA	NA	NA
WP_010929788.1|433216_434617_-	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
WP_010929789.1|436405_436924_-	MgtC/SapB family protein	NA	G3MA03	Bacillus_virus	38.9	2.1e-12
WP_003814694.1|437034_437790_+	TerC family protein	NA	A0A0R6PEZ3	Moraxella_phage	40.8	2.9e-42
WP_003814691.1|437985_439218_+	CoA transferase	NA	NA	NA	NA	NA
WP_010929791.1|439210_439996_+	crotonase/enoyl-CoA hydratase family protein	NA	NA	NA	NA	NA
WP_003814685.1|440062_441034_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003814681.1|441044_442022_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247419.1|442147_443320_+	acyl-CoA dehydrogenase family protein	NA	NA	NA	NA	NA
WP_010929793.1|443346_444375_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_003814674.1|444440_445634_+	acetyl-CoA C-acyltransferase	NA	NA	NA	NA	NA
WP_005012067.1|447415_448366_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 6
NZ_CP010264	Bordetella pertussis strain I656 chromosome, complete genome	4101762	590420	651611	4101762	protease,transposase	uncultured_Mediterranean_phage(40.0%)	55	NA	NA
WP_005013747.1|590420_591371_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023998122.1|591867_592737_+	phosphonate ABC transporter, permease protein PhnE	NA	NA	NA	NA	NA
WP_010931496.1|592733_593555_+	phosphonate ABC transporter, permease protein PhnE	NA	NA	NA	NA	NA
WP_019247235.1|593754_594246_+	CYTH domain-containing protein	NA	NA	NA	NA	NA
WP_019247236.1|594264_595338_+	CHAD domain-containing protein	NA	NA	NA	NA	NA
WP_023853086.1|595384_596488_-	signal recognition particle-docking protein FtsY	NA	NA	NA	NA	NA
WP_003808577.1|596563_597184_+	16S rRNA (guanine(966)-N(2))-methyltransferase RsmD	NA	NA	NA	NA	NA
WP_003808574.1|597204_597714_+	pantetheine-phosphate adenylyltransferase	NA	A0A1B1IVQ3	uncultured_Mediterranean_phage	42.1	1.2e-28
WP_003808570.1|597768_598020_+	YfhL family 4Fe-4S dicluster ferredoxin	NA	A0A1B1IWY9	uncultured_Mediterranean_phage	53.4	1.6e-18
WP_010931494.1|598083_599217_+	benzoate/H(+) symporter BenE family transporter	NA	NA	NA	NA	NA
WP_003808567.1|599224_599611_-	MOSC N-terminal beta barrel domain-containing protein	NA	NA	NA	NA	NA
WP_010931493.1|599607_602127_-	AsmA family protein	NA	NA	NA	NA	NA
WP_003808563.1|602555_602894_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003808562.1|602890_603397_+	SRPBCC family protein	NA	NA	NA	NA	NA
WP_010931492.1|603458_604259_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931491.1|604369_605311_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931490.1|605404_606940_-	M81 family metallopeptidase	NA	NA	NA	NA	NA
WP_010931489.1|608619_610470_-	dipeptide ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	29.2	1.6e-17
WP_003808549.1|610473_611307_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931488.1|611306_612248_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931487.1|612499_613471_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931486.1|613612_615901_+	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
WP_003808542.1|616207_617116_+	TauD/TfdA family dioxygenase	NA	NA	NA	NA	NA
WP_010931485.1|617170_618136_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931484.1|618210_619872_+	thiamine pyrophosphate-binding protein	NA	NA	NA	NA	NA
WP_010931483.1|619943_620654_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|620802_621753_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814152.1|622451_622835_+	membrane protein	NA	NA	NA	NA	NA
WP_010927005.1|622892_623495_+	DUF2946 family protein	NA	NA	NA	NA	NA
WP_003820995.1|623512_623914_-	DoxX family protein	NA	NA	NA	NA	NA
WP_003814158.1|624047_624941_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931481.1|624937_625519_+	NUDIX hydrolase	NA	NA	NA	NA	NA
WP_003814165.1|626313_627048_+	arginyltransferase	NA	NA	NA	NA	NA
WP_010931480.1|627088_628138_+	quinone-dependent dihydroorotate dehydrogenase	NA	NA	NA	NA	NA
WP_003814172.1|628285_628864_-	TIGR01841 family phasin	NA	NA	NA	NA	NA
WP_010931479.1|629250_630228_+	tripartite tricarboxylate transporter substrate binding protein BugD	NA	NA	NA	NA	NA
WP_010931478.1|630321_634716_-	dermonecrotic toxin	NA	NA	NA	NA	NA
WP_003814178.1|634916_635765_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931477.1|635923_636736_-	competence/damage-inducible protein A	NA	NA	NA	NA	NA
WP_005015810.1|636791_637742_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931453.1|637840_638641_-	EI24 domain-containing protein	NA	NA	NA	NA	NA
WP_003814185.1|638702_639086_+	thioredoxin family protein	NA	NA	NA	NA	NA
WP_010931454.1|639097_640531_-	DEAD/DEAH box helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	34.4	1.5e-52
WP_003814188.1|640737_641067_-	AzlD domain-containing protein	NA	NA	NA	NA	NA
WP_010931455.1|641069_641819_-	AzlC family ABC transporter permease	NA	NA	NA	NA	NA
WP_010931456.1|642001_642922_+	branched-chain amino acid transaminase	NA	NA	NA	NA	NA
WP_003814195.1|642968_643181_+	zinc-finger domain-containing protein	NA	NA	NA	NA	NA
WP_010931457.1|643203_643626_+	nuclear transport factor 2 family protein	NA	NA	NA	NA	NA
WP_010931458.1|643642_644743_+	alpha/beta fold hydrolase	NA	NA	NA	NA	NA
WP_010931459.1|644839_646357_-|protease	M48 family metalloprotease	protease	NA	NA	NA	NA
WP_003814203.1|646432_647272_+	UTP--glucose-1-phosphate uridylyltransferase GalU	NA	A0A127AW70	Bacillus_phage	48.9	1.1e-66
WP_003814205.1|647293_648175_-	cytochrome c oxidase assembly protein	NA	NA	NA	NA	NA
WP_003814206.1|648256_649351_-	porin	NA	NA	NA	NA	NA
WP_010929851.1|649644_650595_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_041166340.1|650669_651611_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 7
NZ_CP010264	Bordetella pertussis strain I656 chromosome, complete genome	4101762	656935	703126	4101762	tRNA,transposase,terminase,tail	uncultured_Caudovirales_phage(18.18%)	50	NA	NA
WP_023995141.1|656935_657961_+|tRNA	tRNA dihydrouridine synthase DusB	tRNA	NA	NA	NA	NA
WP_003814221.1|658001_658241_+	DNA-binding protein	NA	NA	NA	NA	NA
WP_010931464.1|658310_659900_+	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase	NA	Q58MG4	Prochlorococcus_phage	47.2	8.7e-65
WP_010931465.1|659899_660448_+	crossover junction endodeoxyribonuclease RuvC	NA	NA	NA	NA	NA
WP_003814226.1|660528_661101_+	Holliday junction branch migration protein RuvA	NA	NA	NA	NA	NA
WP_010927008.1|661119_662031_-	complex I NDUFA9 subunit family protein	NA	NA	NA	NA	NA
WP_003814230.1|662104_663073_-	threo-3-hydroxy-L-aspartate ammonia-lyase	NA	NA	NA	NA	NA
WP_010931466.1|663195_664269_+	Holliday junction branch migration DNA helicase RuvB	NA	A0A127AWE7	Bacillus_phage	25.7	2.3e-08
WP_010931467.1|664273_666094_-	DNA helicase RecQ	NA	L7RCS0	Acanthamoeba_polyphaga_moumouvirus	35.3	3.1e-74
WP_010930800.1|666170_667121_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_033446132.1|667209_667545_+	ASCH domain-containing protein	NA	NA	NA	NA	NA
WP_003819076.1|667678_668329_+	carbonic anhydrase	NA	NA	NA	NA	NA
WP_010931468.1|668350_669769_-	amidase	NA	NA	NA	NA	NA
WP_019248554.1|669838_670594_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019247734.1|670562_671321_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010931471.1|671331_672213_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010931472.1|672229_672937_+	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	25.4	8.2e-07
WP_010931473.1|672939_673698_+	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	24.4	4.4e-14
WP_010931474.1|673907_675650_+	nitrite/sulfite reductase	NA	NA	NA	NA	NA
WP_010925795.1|675642_676167_+	DUF934 domain-containing protein	NA	NA	NA	NA	NA
WP_010931475.1|676206_677001_-	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019248926.1|677168_678242_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|678340_679291_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247378.1|679542_679749_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931451.1|679820_680432_-	S24 family peptidase	NA	NA	NA	NA	NA
WP_023853179.1|680986_681238_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_161633094.1|681230_681920_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|682176_683127_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247942.1|683766_684252_+|transposase	transposase	transposase	C7U0W1	Enterobacteria_phage	61.5	7.3e-39
WP_010931447.1|684238_685516_+|terminase	terminase large subunit	terminase	A0A1B1P9C9	Acinetobacter_phage	64.7	2.4e-150
WP_010931446.1|685518_686937_+	DUF4055 domain-containing protein	NA	R9TF43	Synechococcus_phage	42.1	2.2e-99
WP_010931445.1|686965_688021_+	hypothetical protein	NA	A0A0H5BBX3	Pseudomonas_phage	50.6	2.6e-97
WP_010931444.1|688026_688269_+	hypothetical protein	NA	A0A0H5AUE5	Pseudomonas_phage	53.2	5.6e-16
WP_010931443.1|688391_688994_+	hypothetical protein	NA	R9TF81	Synechococcus_phage	43.6	7.9e-27
WP_005012808.1|689422_690373_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931442.1|691047_691299_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247789.1|691361_691844_+	hypothetical protein	NA	A0A2H4JE38	uncultured_Caudovirales_phage	37.1	1.8e-13
WP_010931440.1|691845_692046_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931439.1|692045_692441_+	hypothetical protein	NA	A0A2D2W284	Stenotrophomonas_phage	35.0	7.8e-07
WP_010931438.1|692437_692836_+	hypothetical protein	NA	I6PCW1	Cronobacter_phage	38.0	4.2e-16
WP_010931437.1|692832_693255_+	DUF4128 domain-containing protein	NA	NA	NA	NA	NA
WP_010931436.1|693262_693763_+	HNH endonuclease	NA	A0A1I9SEX5	Klebsiella_phage	45.1	4.4e-31
WP_010931435.1|694017_694536_+|tail	phage tail protein	tail	A0A1S5R1H0	Pseudomonas_phage	38.3	5.4e-24
WP_003813412.1|694545_694875_+|tail	phage tail assembly chaperone	tail	A0A2H4J121	uncultured_Caudovirales_phage	44.0	2.9e-15
WP_010931434.1|694892_695183_+	DUF1799 domain-containing protein	NA	A0A2H4JBP7	uncultured_Caudovirales_phage	45.2	3.7e-14
WP_010931433.1|695208_697821_+|tail	phage tail tape measure protein	tail	A0A2H4J107	uncultured_Caudovirales_phage	38.6	4.9e-105
WP_010931432.1|697830_698190_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931431.1|698257_698791_+	DUF1833 family protein	NA	A5A3Q9	Burkholderia_phage	46.9	1.1e-40
WP_010931430.1|698787_699177_+	C40 family peptidase	NA	A0A0G3EYJ9	Achromobacter_phage	50.0	3.0e-35
WP_010931429.1|699169_703126_+	DUF1983 domain-containing protein	NA	A0A0B5A1N2	Achromobacter_phage	40.8	3.9e-215
>prophage 8
NZ_CP010264	Bordetella pertussis strain I656 chromosome, complete genome	4101762	709292	763222	4101762	tRNA,transposase	Planktothrix_phage(50.0%)	46	NA	NA
WP_003814636.1|709292_711023_+|tRNA	proline--tRNA ligase	tRNA	A0A2K9L3R9	Tupanvirus	29.4	4.6e-11
WP_010931419.1|711075_711504_+	tol-pal system-associated acyl-CoA thioesterase	NA	NA	NA	NA	NA
WP_003814641.1|711506_712187_+	protein TolQ	NA	NA	NA	NA	NA
WP_003814643.1|712186_712645_+	protein TolR	NA	NA	NA	NA	NA
WP_010931418.1|712681_713656_+	cell envelope integrity protein TolA	NA	NA	NA	NA	NA
WP_010931417.1|713672_714989_+	Tol-Pal system protein TolB	NA	NA	NA	NA	NA
WP_003814650.1|715020_715518_+	peptidoglycan-associated lipoprotein Pal	NA	NA	NA	NA	NA
WP_003814652.1|715604_716294_+	tol-pal system protein YbgF	NA	NA	NA	NA	NA
WP_010931416.1|716293_717343_+	iron ABC transporter permease	NA	NA	NA	NA	NA
WP_003814657.1|717339_718134_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.6	2.4e-15
WP_019247923.1|718302_718653_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247922.1|718628_719186_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_005012808.1|720315_721266_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929184.1|723403_724633_+	spore maturation protein	NA	NA	NA	NA	NA
WP_003814419.1|724635_726078_-	pyruvate kinase	NA	NA	NA	NA	NA
WP_010931414.1|726182_727328_+	glycerate kinase	NA	W6LM47	Streptococcus_phage	42.2	1.7e-41
WP_010931413.1|727359_728157_-	16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA	NA	NA	NA	NA	NA
WP_010931412.1|728181_729741_-	chaperone SurA	NA	NA	NA	NA	NA
WP_010931411.1|729737_732110_-	LPS-assembly protein LptD	NA	NA	NA	NA	NA
WP_010931410.1|732219_733323_+	phosphotransferase	NA	NA	NA	NA	NA
WP_010931409.1|733322_734015_+	nucleotidyltransferase family protein	NA	NA	NA	NA	NA
WP_003814436.1|734158_734860_+	membrane protein	NA	NA	NA	NA	NA
WP_003814437.1|734844_735222_-	4a-hydroxytetrahydrobiopterin dehydratase	NA	NA	NA	NA	NA
WP_005012067.1|735953_736904_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814441.1|737063_737936_-	oxaloacetate decarboxylase	NA	NA	NA	NA	NA
WP_003814443.1|738276_738495_+	DUF1059 domain-containing protein	NA	NA	NA	NA	NA
WP_019247242.1|738534_739914_-	aminotransferase class III-fold pyridoxal phosphate-dependent enzyme	NA	NA	NA	NA	NA
WP_010929976.1|739955_741353_-	amidase family protein	NA	NA	NA	NA	NA
WP_010927038.1|741392_743045_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.8	6.0e-16
WP_010929977.1|743048_743933_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010929978.1|743932_744874_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010929979.1|744952_746572_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929980.1|746738_747554_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814459.1|747621_748191_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005013747.1|748191_749142_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814461.1|749796_750894_+	carboxynorspermidine decarboxylase	NA	NA	NA	NA	NA
WP_003814462.1|750927_752193_+	saccharopine dehydrogenase family protein	NA	NA	NA	NA	NA
WP_010929591.1|752350_753301_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929982.1|753544_754135_+	polyisoprenoid-binding protein	NA	NA	NA	NA	NA
WP_010929983.1|754150_756595_-	TonB-dependent siderophore receptor	NA	NA	NA	NA	NA
WP_003814467.1|756714_757686_-	FecR family protein	NA	NA	NA	NA	NA
WP_023852739.1|757817_758342_+	sigma-70 family RNA polymerase sigma factor	NA	NA	NA	NA	NA
WP_005012067.1|758301_759252_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929984.1|759473_761669_-	DUF1156 domain-containing protein	NA	NA	NA	NA	NA
WP_010929985.1|761741_762170_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_005012808.1|762271_763222_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 9
NZ_CP010264	Bordetella pertussis strain I656 chromosome, complete genome	4101762	814815	886828	4101762	holin,transposase	Acinetobacter_phage(20.0%)	60	NA	NA
WP_010931070.1|814815_815766_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930050.1|815864_816521_-	DUF4136 domain-containing protein	NA	NA	NA	NA	NA
WP_010930049.1|816668_819377_+	aminopeptidase N	NA	A0A0P0IY26	Acinetobacter_phage	24.0	2.8e-15
WP_003813068.1|819386_820406_+	class 1 fructose-bisphosphatase	NA	A0A1V0SKX4	Klosneuvirus	35.7	1.5e-49
WP_041337087.1|820402_821353_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003813893.1|821451_821940_-	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	NA	NA	NA	NA	NA
WP_003813895.1|821936_822620_-	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	NA	NA	NA	NA	NA
WP_010926959.1|822649_826105_+	transcription-repair coupling factor	NA	NA	NA	NA	NA
WP_010930046.1|826140_827001_+	phosphoserine phosphatase SerB	NA	NA	NA	NA	NA
WP_010930045.1|827129_828047_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930044.1|828184_829165_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003813904.1|829224_831015_+	acetolactate synthase large subunit	NA	A0A0P0YLY7	Yellowstone_lake_phycodnavirus	26.1	2.0e-25
WP_010930042.1|831011_831788_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930041.1|831797_832316_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_003813909.1|832428_834699_-	TonB-dependent siderophore receptor	NA	NA	NA	NA	NA
WP_010930039.1|834910_837142_-	TonB-dependent siderophore receptor	NA	NA	NA	NA	NA
WP_003813915.1|837442_837772_-	DUF2818 family protein	NA	NA	NA	NA	NA
WP_019248505.1|837788_839273_-	NADH-quinone oxidoreductase subunit NuoN	NA	NA	NA	NA	NA
WP_019247436.1|839283_840786_-	NADH-quinone oxidoreductase subunit M	NA	NA	NA	NA	NA
WP_010930037.1|840782_842795_-	NADH-quinone oxidoreductase subunit L	NA	NA	NA	NA	NA
WP_003813920.1|842812_843121_-	NADH-quinone oxidoreductase subunit NuoK	NA	NA	NA	NA	NA
WP_003813921.1|843117_843765_-	NADH-quinone oxidoreductase subunit J	NA	NA	NA	NA	NA
WP_003813924.1|843782_844271_-	NADH-quinone oxidoreductase subunit NuoI	NA	NA	NA	NA	NA
WP_003813926.1|844292_845366_-	NADH-quinone oxidoreductase subunit NuoH	NA	NA	NA	NA	NA
WP_010930036.1|845365_847693_-	NADH-quinone oxidoreductase subunit G	NA	NA	NA	NA	NA
WP_003813930.1|847708_849076_-	NADH-quinone oxidoreductase subunit NuoF	NA	NA	NA	NA	NA
WP_003813932.1|849072_849567_-	NADH-quinone oxidoreductase subunit NuoE	NA	NA	NA	NA	NA
WP_010930035.1|849612_850869_-	NADH-quinone oxidoreductase subunit D	NA	NA	NA	NA	NA
WP_010926963.1|850871_851495_-	NADH-quinone oxidoreductase subunit C	NA	NA	NA	NA	NA
WP_003813941.1|851569_852046_-	NADH-quinone oxidoreductase subunit B	NA	NA	NA	NA	NA
WP_003813943.1|852082_852442_-	NADH-quinone oxidoreductase subunit A	NA	NA	NA	NA	NA
WP_010930034.1|852630_853788_-	porin	NA	NA	NA	NA	NA
WP_010929591.1|854100_855051_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247352.1|855068_855623_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003813949.1|855624_856059_+	PaaI family thioesterase	NA	NA	NA	NA	NA
WP_003813951.1|856055_856490_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003813952.1|856473_857277_-	phosphatase PAP2 family protein	NA	NA	NA	NA	NA
WP_003813954.1|857293_858109_-	metallophosphoesterase	NA	NA	NA	NA	NA
WP_019248500.1|858105_858921_-	diacylglycerol kinase	NA	NA	NA	NA	NA
WP_010930033.1|859067_859769_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003813960.1|859796_861755_-|holin	choline BCCT transporter BetT	holin	A0A2I7QNT1	Vibrio_phage	30.3	8.0e-28
WP_005013747.1|861837_862788_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930032.1|863008_863677_+	transcriptional regulator	NA	NA	NA	NA	NA
WP_010930031.1|863800_864907_+	efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
WP_010930030.1|864919_868033_+	MexW/MexI family multidrug efflux RND transporter permease subunit	NA	S5VTK5	Leptospira_phage	21.5	4.5e-57
WP_010930029.1|868029_869523_+	efflux transporter outer membrane subunit	NA	NA	NA	NA	NA
WP_010926969.1|869537_870209_+	transcriptional regulator	NA	NA	NA	NA	NA
WP_003813974.1|870252_870747_-	azurin	NA	NA	NA	NA	NA
WP_010930027.1|870887_871535_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_023853163.1|871638_873687_+	hydantoinase/oxoprolinase family protein	NA	NA	NA	NA	NA
WP_010930025.1|873683_875696_+	hydantoinase B/oxoprolinase family protein	NA	NA	NA	NA	NA
WP_010930024.1|875721_877056_+	FAD-binding oxidoreductase	NA	NA	NA	NA	NA
WP_003813981.1|877164_878157_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003813982.1|878223_880308_-	rhodanese-like domain-containing protein	NA	NA	NA	NA	NA
WP_010930023.1|880332_881304_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930022.1|881432_882464_-	succinylglutamate desuccinylase/aspartoacylase family protein	NA	NA	NA	NA	NA
WP_010930021.1|882467_883619_-	cystathionine beta-lyase	NA	NA	NA	NA	NA
WP_076879542.1|883789_884713_+	transcriptional regulator LrhA	NA	NA	NA	NA	NA
WP_003813987.1|884790_885615_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_023994644.1|885811_886828_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
>prophage 10
NZ_CP010264	Bordetella pertussis strain I656 chromosome, complete genome	4101762	894462	957543	4101762	holin,transposase	Bacillus_phage(25.0%)	54	NA	NA
WP_010930018.1|894462_896694_-|holin	choline BCCT transporter BetT	holin	NA	NA	NA	NA
WP_010930017.1|897481_897928_-	preprotein translocase subunit SecG	NA	NA	NA	NA	NA
WP_003813996.1|897949_898696_-	triose-phosphate isomerase	NA	NA	NA	NA	NA
WP_003813997.1|898839_899817_-	NAD(P)H-quinone oxidoreductase	NA	NA	NA	NA	NA
WP_010930016.1|900450_901062_+	PIN domain-containing protein	NA	K4HZX4	Acidithiobacillus_phage	32.5	3.3e-12
WP_003813999.1|901055_902273_-	threonine ammonia-lyase	NA	NA	NA	NA	NA
WP_005013747.1|902413_903364_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814000.1|903360_904080_-	lipoprotein	NA	NA	NA	NA	NA
WP_003821234.1|904200_906360_-	polyribonucleotide nucleotidyltransferase	NA	NA	NA	NA	NA
WP_003814002.1|906450_906720_-	30S ribosomal protein S15	NA	NA	NA	NA	NA
WP_003814003.1|907013_907541_+	lipoprotein	NA	NA	NA	NA	NA
WP_003814004.1|907559_908339_-	CDP-diacylglycerol--serine O-phosphatidyltransferase	NA	NA	NA	NA	NA
WP_010930015.1|908506_909523_-	ketol-acid reductoisomerase	NA	NA	NA	NA	NA
WP_003814006.1|909595_910087_-	acetolactate synthase small subunit	NA	NA	NA	NA	NA
WP_003814007.1|910097_911813_-	acetolactate synthase 3 catalytic subunit	NA	A0A0P0CDR3	Ostreococcus_lucimarinus_virus	30.3	3.1e-60
WP_005012067.1|912976_913927_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930051.1|913923_915756_-	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	26.4	1.3e-27
WP_010930052.1|916154_916814_+	thiopurine S-methyltransferase	NA	NA	NA	NA	NA
WP_023852837.1|916907_917054_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003809770.1|917162_917330_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930054.1|917341_918022_-	DUF3313 domain-containing protein	NA	NA	NA	NA	NA
WP_010930055.1|918303_919020_+	flagellar brake protein	NA	NA	NA	NA	NA
WP_010930056.1|919034_920336_-	phospholipase A	NA	NA	NA	NA	NA
WP_029444137.1|922480_925369_+	HD domain-containing protein	NA	NA	NA	NA	NA
WP_010930057.1|925592_926945_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_004568140.1|926973_927495_+	acetyl-CoA carboxylase biotin carboxyl carrier protein	NA	NA	NA	NA	NA
WP_003819989.1|927491_928946_+	carboxylase	NA	NA	NA	NA	NA
WP_023852826.1|928980_929229_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247557.1|929334_930210_+	amidohydrolase	NA	NA	NA	NA	NA
WP_010930060.1|930235_931291_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930061.1|931303_932095_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930062.1|932127_933498_+	acetyl-CoA carboxylase biotin carboxylase subunit	NA	NA	NA	NA	NA
WP_005012067.1|934674_935625_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930064.1|935677_935899_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003810832.1|936058_936271_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003810835.1|936390_937509_+	mannose-6-phosphate isomerase	NA	NA	NA	NA	NA
WP_003810839.1|938014_938266_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930066.1|938378_939329_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003810840.1|939325_939709_-	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA	NA
WP_023852913.1|939763_941578_-	ABC transporter ATP-binding protein/permease	NA	W8CYL7	Bacillus_phage	27.9	5.7e-44
WP_010930068.1|941727_942555_+	aldo/keto reductase	NA	A0A2H4PQR8	Staphylococcus_phage	47.4	1.7e-67
WP_010930069.1|942600_943581_+	aldo/keto reductase	NA	NA	NA	NA	NA
WP_003810850.1|943577_943790_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003810851.1|943786_944968_-	PepSY domain-containing protein	NA	NA	NA	NA	NA
WP_019248496.1|945131_945866_+	metallophosphoesterase	NA	A0A2H4J0P0	uncultured_Caudovirales_phage	49.2	1.9e-62
WP_010930071.1|945867_948480_-	PBP1A family penicillin-binding protein	NA	NA	NA	NA	NA
WP_003810859.1|948615_950529_-	S9 family peptidase	NA	NA	NA	NA	NA
WP_010930072.1|951144_951555_-	PaaI family thioesterase	NA	NA	NA	NA	NA
WP_003810865.1|951652_952738_+	DNA polymerase IV	NA	NA	NA	NA	NA
WP_005012067.1|952836_953787_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930088.1|953783_954758_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003821497.1|954882_955794_+	LysR family transcriptional regulator	NA	Q6JIH3	Burkholderia_virus	27.6	4.4e-05
WP_004566317.1|956070_956463_-	type II toxin-antitoxin system HicB family antitoxin	NA	A0A0R6PJ17	Moraxella_phage	45.0	4.8e-25
WP_005012808.1|956592_957543_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 11
NZ_CP010264	Bordetella pertussis strain I656 chromosome, complete genome	4101762	976965	1047232	4101762	transposase	Streptococcus_phage(14.29%)	57	NA	NA
WP_005012067.1|976965_977916_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014486062.1|977996_978908_+	cysteine synthase CysM	NA	A0A1X9I5K7	Streptococcus_phage	38.8	8.0e-47
WP_010930108.1|978968_980114_-	lytic murein transglycosylase B	NA	NA	NA	NA	NA
WP_003821521.1|980133_981048_+	histone deacetylase family protein	NA	A0A2K9KZC4	Tupanvirus	34.7	9.8e-45
WP_010930110.1|981119_981869_+	electron transfer flavoprotein subunit beta/FixA family protein	NA	NA	NA	NA	NA
WP_010930111.1|981868_982798_+	electron transfer flavoprotein subunit alpha	NA	NA	NA	NA	NA
WP_003821527.1|983041_984868_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_003813333.1|984950_985592_+	peroxiredoxin	NA	NA	NA	NA	NA
WP_170954292.1|985814_986816_+	sulfate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930112.1|988652_989717_+	sulfate ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	30.3	3.8e-24
WP_010930113.1|990514_991423_+	sulfate adenylyltransferase subunit CysD	NA	NA	NA	NA	NA
WP_023852693.1|992910_994185_+	PA0069 family radical SAM protein	NA	NA	NA	NA	NA
WP_023852686.1|994338_994719_+	hypothetical protein	NA	NA	NA	NA	NA
WP_014905652.1|994726_995599_-	EamA family transporter	NA	NA	NA	NA	NA
WP_003813315.1|995904_996285_+	50S ribosomal protein L19	NA	NA	NA	NA	NA
WP_003813314.1|996495_997221_+	CoA pyrophosphatase	NA	NA	NA	NA	NA
WP_005012067.1|997316_998267_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930118.1|998371_999421_+	NADP(H)-dependent aldo-keto reductase	NA	NA	NA	NA	NA
WP_010929632.1|999558_1000575_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010926548.1|1002083_1002656_-	chorismate lyase	NA	NA	NA	NA	NA
WP_010930119.1|1002715_1003447_+	rRNA pseudouridine synthase	NA	NA	NA	NA	NA
WP_029443805.1|1003498_1004416_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930121.1|1005223_1008403_+	efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_014486063.1|1008399_1009782_+	efflux transporter outer membrane subunit	NA	NA	NA	NA	NA
WP_010930123.1|1009851_1010103_-	GlsB/YeaQ/YmgE family stress response membrane protein	NA	NA	NA	NA	NA
WP_010930124.1|1010248_1010863_-	SCO family protein	NA	NA	NA	NA	NA
WP_019248379.1|1011049_1013164_-	M3 family metallopeptidase	NA	NA	NA	NA	NA
WP_003811948.1|1013239_1014091_-	bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD	NA	A0A249XZQ2	Enterococcus_phage	39.8	2.1e-33
WP_010930126.1|1014087_1014714_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_003817147.1|1014710_1016465_-	PAS domain S-box protein	NA	NA	NA	NA	NA
WP_010930127.1|1016757_1019463_+	pyruvate dehydrogenase (acetyl-transferring), homodimeric type	NA	NA	NA	NA	NA
WP_010930128.1|1019475_1021137_+	dihydrolipoyllysine-residue acetyltransferase	NA	NA	NA	NA	NA
WP_010930129.1|1021149_1022940_+	dihydrolipoyl dehydrogenase	NA	A0A2K5B2C5	Erysipelothrix_phage	25.2	2.4e-39
WP_003817151.1|1023161_1024337_-	FliC/FljB family flagellin	NA	NA	NA	NA	NA
WP_010929584.1|1024379_1025330_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930130.1|1025428_1026169_-	16S rRNA (uracil(1498)-N(3))-methyltransferase	NA	NA	NA	NA	NA
WP_010930131.1|1026363_1028400_+	transketolase	NA	NA	NA	NA	NA
WP_010930132.1|1028417_1029428_+	type I glyceraldehyde-3-phosphate dehydrogenase	NA	NA	NA	NA	NA
WP_010930133.1|1029545_1030739_+	phosphoglycerate kinase	NA	NA	NA	NA	NA
WP_010930134.1|1030768_1031542_-	enoyl-ACP reductase FabI	NA	NA	NA	NA	NA
WP_010930135.1|1031538_1032729_-	acetate kinase	NA	NA	NA	NA	NA
WP_003809454.1|1032754_1033693_-	phosphate acetyltransferase	NA	NA	NA	NA	NA
WP_010930136.1|1033689_1036038_-	DUF3141 domain-containing protein	NA	NA	NA	NA	NA
WP_010930137.1|1036192_1036834_-	glutathione transferase	NA	NA	NA	NA	NA
WP_023853531.1|1036937_1038071_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994624.1|1038163_1038316_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930138.1|1038347_1038896_-	DinB family protein	NA	NA	NA	NA	NA
WP_003819814.1|1038914_1039400_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_010930139.1|1039577_1040516_+	DnaJ domain-containing protein	NA	A0A0P0YMJ9	Yellowstone_lake_phycodnavirus	24.1	5.6e-11
WP_003809467.1|1040518_1040836_+	MerR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247197.1|1040881_1041826_+	AzlC family ABC transporter permease	NA	NA	NA	NA	NA
WP_010930141.1|1043506_1044157_+	molybdopterin adenylyltransferase	NA	NA	NA	NA	NA
WP_003809479.1|1044210_1044546_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930142.1|1044542_1045403_+	M23 family metallopeptidase	NA	A0A292GJG6	Xanthomonas_phage	36.1	2.6e-15
WP_003819817.1|1045419_1045701_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003809486.1|1045774_1046038_-	translation initiation factor IF-1	NA	NA	NA	NA	NA
WP_005012067.1|1046281_1047232_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 12
NZ_CP010264	Bordetella pertussis strain I656 chromosome, complete genome	4101762	1059450	1116832	4101762	tRNA,holin,transposase,protease	uncultured_Mediterranean_phage(37.5%)	47	NA	NA
WP_010931363.1|1059450_1060467_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010930148.1|1061255_1062305_+	aldo/keto reductase	NA	NA	NA	NA	NA
WP_014486064.1|1062301_1063945_-	apolipoprotein N-acyltransferase	NA	NA	NA	NA	NA
WP_010930149.1|1063941_1064829_-	CBS domain-containing protein	NA	NA	NA	NA	NA
WP_003809396.1|1064969_1065443_-	rRNA maturation RNase YbeY	NA	NA	NA	NA	NA
WP_010930151.1|1065432_1066455_-	PhoH family protein	NA	A0A0S0MVD6	Pseudomonas_phage	45.4	8.7e-50
WP_015041211.1|1066451_1067879_-|tRNA	tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB	tRNA	NA	NA	NA	NA
WP_010931363.1|1068816_1069833_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003809411.1|1070165_1071101_-	protein translocase subunit SecF	NA	A0A1B1IVP7	uncultured_Mediterranean_phage	35.5	3.0e-41
WP_010930154.1|1071150_1073031_-	protein translocase subunit SecD	NA	NA	NA	NA	NA
WP_003809416.1|1073097_1073442_-	preprotein translocase subunit YajC	NA	A0A1B1IVR5	uncultured_Mediterranean_phage	40.4	1.0e-10
WP_010930155.1|1073586_1074723_-|tRNA	tRNA guanosine(34) transglycosylase Tgt	tRNA	A0A1B1IVQ4	uncultured_Mediterranean_phage	44.4	1.9e-85
WP_023853534.1|1074719_1075793_-|tRNA	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	tRNA	NA	NA	NA	NA
WP_003809423.1|1075950_1077387_+	D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase	NA	NA	NA	NA	NA
WP_010930157.1|1077477_1078119_+	uracil phosphoribosyltransferase	NA	NA	NA	NA	NA
WP_023853536.1|1078454_1079471_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_019248433.1|1079803_1082551_+	pertactin autotransporter	NA	NA	NA	NA	NA
WP_010930160.1|1082617_1084039_-	uroporphyrinogen-III C-methyltransferase	NA	NA	NA	NA	NA
WP_003809431.1|1084302_1085019_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003809432.1|1085103_1085421_+	DUF883 domain-containing protein	NA	NA	NA	NA	NA
WP_003819794.1|1085461_1085875_+|holin	phage holin family protein	holin	NA	NA	NA	NA
WP_010930161.1|1085876_1086236_+	hypothetical protein	NA	NA	NA	NA	NA
WP_023853525.1|1086278_1087823_-	4-hydroxy-3-polyprenylbenzoate decarboxylase	NA	NA	NA	NA	NA
WP_010930163.1|1087906_1088737_+	lytic transglycosylase domain-containing protein	NA	NA	NA	NA	NA
WP_010930164.1|1088771_1089926_-	pyridoxal phosphate-dependent aminotransferase	NA	NA	NA	NA	NA
WP_010930165.1|1089968_1090841_+	hypothetical protein	NA	NA	NA	NA	NA
WP_014486065.1|1090957_1093246_+	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
WP_003809441.1|1094452_1094917_+	barstar family protein	NA	NA	NA	NA	NA
WP_005013747.1|1094943_1095894_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930167.1|1096261_1097038_-	phosphate ABC transporter ATP-binding protein PstB	NA	G9BWD6	Planktothrix_phage	28.7	4.3e-17
WP_003809638.1|1097082_1097940_-	phosphate ABC transporter permease PstA	NA	NA	NA	NA	NA
WP_010930169.1|1097961_1098978_-	phosphate ABC transporter permease subunit PstC	NA	NA	NA	NA	NA
WP_014486066.1|1099112_1100153_-	phosphate ABC transporter substrate-binding protein PstS	NA	M4QHS4	Cyanophage	40.2	2.1e-51
WP_010930171.1|1100347_1102429_-	polyphosphate kinase 1	NA	NA	NA	NA	NA
WP_010930172.1|1102664_1104158_+	exopolyphosphatase	NA	NA	NA	NA	NA
WP_003809629.1|1104388_1105183_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_003819875.1|1105403_1106762_-	phosphoglucosamine mutase	NA	NA	NA	NA	NA
WP_010930173.1|1106758_1107601_-	dihydropteroate synthase	NA	A0A0B5J4J5	Pandoravirus	32.5	3.2e-26
WP_010930174.1|1107619_1109506_-|protease	ATP-dependent zinc metalloprotease FtsH	protease	M4QMW8	Micromonas_pusilla_virus	41.5	1.4e-109
WP_162096758.1|1109447_1109699_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930175.1|1109743_1110376_-	RlmE family RNA methyltransferase	NA	NA	NA	NA	NA
WP_003809618.1|1110394_1110997_+	YhbY family RNA-binding protein	NA	NA	NA	NA	NA
WP_010929591.1|1111148_1112099_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_161633091.1|1112679_1113387_+	DUF192 domain-containing protein	NA	NA	NA	NA	NA
WP_003812707.1|1113745_1114732_-	homoserine kinase	NA	NA	NA	NA	NA
WP_010930178.1|1114871_1115885_+|tRNA	tRNA dihydrouridine(20/20a) synthase DusA	tRNA	NA	NA	NA	NA
WP_005012067.1|1115881_1116832_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 13
NZ_CP010264	Bordetella pertussis strain I656 chromosome, complete genome	4101762	1316903	1385390	4101762	transposase	Planktothrix_phage(33.33%)	58	NA	NA
WP_005012808.1|1316903_1317854_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930283.1|1318622_1319261_-	glutathione S-transferase	NA	NA	NA	NA	NA
WP_019247793.1|1320150_1320597_+	aspartate/glutamate racemase family protein	NA	NA	NA	NA	NA
WP_010930284.1|1320678_1321380_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.4	1.3e-17
WP_003811277.1|1321380_1322148_-	high-affinity branched-chain amino acid ABC transporter ATP-binding protein LivG	NA	A0A2H4PQG7	Staphylococcus_phage	26.4	1.2e-14
WP_010930285.1|1322144_1323383_-	high-affinity branched-chain amino acid ABC transporter permease LivM	NA	NA	NA	NA	NA
WP_003811272.1|1323382_1324309_-	high-affinity branched-chain amino acid ABC transporter permease LivH	NA	NA	NA	NA	NA
WP_010930286.1|1324411_1325527_-	branched-chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_005015810.1|1325542_1326493_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930287.1|1326846_1327428_-	queuosine precursor transporter	NA	A0A2I7SAW6	Vibrio_phage	37.3	9.4e-17
WP_003811267.1|1327424_1328258_-	pyrroline-5-carboxylate reductase	NA	NA	NA	NA	NA
WP_010930288.1|1328468_1329782_+	sn-glycerol-3-phosphate ABC transporter substrate-binding protein UgpB	NA	NA	NA	NA	NA
WP_003811262.1|1329958_1330840_+	sn-glycerol-3-phosphate ABC transporter permease UgpA	NA	NA	NA	NA	NA
WP_003811259.1|1330859_1331711_+	sn-glycerol-3-phosphate ABC transporter permease UgpE	NA	NA	NA	NA	NA
WP_010930289.1|1331763_1332852_+	sn-glycerol-3-phosphate import ATP-binding protein UgpC	NA	G9BWD6	Planktothrix_phage	31.2	2.2e-19
WP_010930290.1|1332962_1334090_-	branched-chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003811244.1|1334324_1334936_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_010929584.1|1335034_1335985_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811293.1|1336206_1336584_-	DUF423 domain-containing protein	NA	NA	NA	NA	NA
WP_003811295.1|1336731_1337229_+	DUF2384 domain-containing protein	NA	NA	NA	NA	NA
WP_010930291.1|1337225_1337753_+	RES family NAD+ phosphorylase	NA	NA	NA	NA	NA
WP_003811298.1|1337886_1338702_+	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930292.1|1338714_1339896_-	alpha-hydroxy-acid oxidizing protein	NA	NA	NA	NA	NA
WP_003811301.1|1339943_1340837_-	phosphatidylserine decarboxylase	NA	NA	NA	NA	NA
WP_010930293.1|1340963_1341434_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930294.1|1341559_1342387_-	DUF3298 domain-containing protein	NA	NA	NA	NA	NA
WP_003811306.1|1342415_1343192_-	lipoate--protein ligase family protein	NA	NA	NA	NA	NA
WP_023852802.1|1343188_1343464_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930295.1|1343478_1343943_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_010930296.1|1343954_1344656_-	glutathione S-transferase N-terminal domain-containing protein	NA	NA	NA	NA	NA
WP_003811310.1|1344765_1345266_-	glutathione peroxidase	NA	Q6VZR0	Canarypox_virus	38.4	4.7e-25
WP_010930297.1|1345348_1346527_-	DUF1501 domain-containing protein	NA	NA	NA	NA	NA
WP_003811313.1|1348154_1348490_+	tetratricopeptide repeat protein	NA	NA	NA	NA	NA
WP_010930298.1|1348677_1350126_+	CoA transferase	NA	NA	NA	NA	NA
WP_023852799.1|1350183_1350528_+	arsenate reductase (glutaredoxin)	NA	A0A2H4J8T1	uncultured_Caudovirales_phage	58.4	3.0e-31
WP_003811316.1|1350634_1351174_-	peroxiredoxin	NA	NA	NA	NA	NA
WP_005012067.1|1351266_1352217_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023852768.1|1352315_1352723_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247530.1|1352955_1353387_-	YXWGXW repeat-containing protein	NA	NA	NA	NA	NA
WP_010930300.1|1353568_1353973_-	DoxX family protein	NA	NA	NA	NA	NA
WP_010930301.1|1355209_1355533_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247533.1|1355535_1356423_-	aldo/keto reductase	NA	NA	NA	NA	NA
WP_003811322.1|1356455_1356881_-	universal stress protein	NA	NA	NA	NA	NA
WP_019247534.1|1356952_1357306_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003811324.1|1357545_1358052_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930302.1|1358090_1359422_-	transcriptional regulator PtsJ	NA	NA	NA	NA	NA
WP_003811326.1|1359481_1360297_+	YggS family pyridoxal phosphate-dependent enzyme	NA	NA	NA	NA	NA
WP_010930303.1|1360293_1361148_+	pyridoxine/pyridoxal/pyridoxamine kinase	NA	NA	NA	NA	NA
WP_010930304.1|1364210_1366754_-	malto-oligosyltrehalose synthase	NA	NA	NA	NA	NA
WP_010930305.1|1368120_1369875_-	malto-oligosyltrehalose trehalohydrolase	NA	NA	NA	NA	NA
WP_010930306.1|1369871_1371992_-	glycogen debranching protein GlgX	NA	NA	NA	NA	NA
WP_010930307.1|1371996_1374192_-	1,4-alpha-glucan branching protein GlgB	NA	NA	NA	NA	NA
WP_010930308.1|1374188_1377530_-	maltose alpha-D-glucosyltransferase	NA	NA	NA	NA	NA
WP_010930208.1|1380332_1381283_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811361.1|1381348_1381528_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247449.1|1381644_1382400_-	alpha/beta fold hydrolase	NA	NA	NA	NA	NA
WP_010930310.1|1382386_1383532_-	DUF3182 family protein	NA	NA	NA	NA	NA
WP_010930208.1|1384439_1385390_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 14
NZ_CP010264	Bordetella pertussis strain I656 chromosome, complete genome	4101762	1445881	1501369	4101762	protease,transposase	Mollivirus(16.67%)	56	NA	NA
WP_005012067.1|1445881_1446832_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811846.1|1448033_1448480_-	flagellar export protein FliJ	NA	NA	NA	NA	NA
WP_019247562.1|1448472_1449948_-	flagellar protein export ATPase FliI	NA	NA	NA	NA	NA
WP_010930338.1|1449944_1450700_-	flagellar assembly protein FliH	NA	NA	NA	NA	NA
WP_003817203.1|1450692_1451703_-	flagellar motor switch protein FliG	NA	NA	NA	NA	NA
WP_010930339.1|1451692_1453369_-	flagellar M-ring protein FliF	NA	NA	NA	NA	NA
WP_010930340.1|1453681_1454014_+	flagellar hook-basal body complex protein FliE	NA	NA	NA	NA	NA
WP_010930341.1|1454027_1454423_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930342.1|1454432_1454759_-	EscU/YscU/HrcU family type III secretion system export apparatus switch protein	NA	NA	NA	NA	NA
WP_019247563.1|1454755_1455082_-	flagellar hook-length control protein FliK	NA	NA	NA	NA	NA
WP_023994685.1|1455008_1456031_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930343.1|1456027_1456378_-	flagellar protein FliT	NA	NA	NA	NA	NA
WP_010930344.1|1456425_1456854_-	flagellar export chaperone FliS	NA	NA	NA	NA	NA
WP_010930345.1|1456861_1458235_-	flagellar filament capping protein FliD	NA	NA	NA	NA	NA
WP_003817216.1|1458375_1458753_-	flagellar protein FlaG	NA	NA	NA	NA	NA
WP_010930346.1|1459015_1460323_+	bifunctional tetrahydrofolate synthase/dihydrofolate synthase	NA	NA	NA	NA	NA
WP_023852965.1|1460383_1461214_+	SPOR domain-containing protein	NA	NA	NA	NA	NA
WP_003811815.1|1461210_1461699_+	CvpA family protein	NA	NA	NA	NA	NA
WP_003811814.1|1461740_1463261_+	amidophosphoribosyltransferase	NA	A0A0M3SGR2	Mollivirus	43.7	4.8e-97
WP_003811812.1|1463304_1463781_-	disulfide bond formation protein B	NA	NA	NA	NA	NA
WP_010930348.1|1464584_1467182_-	[protein-PII] uridylyltransferase	NA	NA	NA	NA	NA
WP_003811806.1|1467211_1468033_-	type I methionyl aminopeptidase	NA	NA	NA	NA	NA
WP_003811803.1|1468759_1469509_+	30S ribosomal protein S2	NA	NA	NA	NA	NA
WP_010926570.1|1469692_1470571_+	elongation factor Ts	NA	NA	NA	NA	NA
WP_010930349.1|1470668_1471385_+	UMP kinase	NA	NA	NA	NA	NA
WP_003811796.1|1471399_1471960_+	ribosome recycling factor	NA	NA	NA	NA	NA
WP_010930350.1|1472126_1472891_+	di-trans,poly-cis-decaprenylcistransferase	NA	R9W0U9	Flavobacterium_phage	36.1	1.7e-18
WP_010930351.1|1472910_1473768_+	phosphatidate cytidylyltransferase	NA	NA	NA	NA	NA
WP_003811788.1|1473764_1474964_+	1-deoxy-D-xylulose-5-phosphate reductoisomerase	NA	NA	NA	NA	NA
WP_010930352.1|1475003_1476338_+|protease	RIP metalloprotease RseP	protease	NA	NA	NA	NA
WP_010930353.1|1476390_1478727_+	outer membrane protein assembly factor BamA	NA	NA	NA	NA	NA
WP_003811782.1|1478852_1479416_+	OmpH family outer membrane protein	NA	NA	NA	NA	NA
WP_010930354.1|1479424_1480516_+	UDP-3-O-(3-hydroxymyristoyl)glucosamine N-acyltransferase	NA	NA	NA	NA	NA
WP_003811776.1|1480587_1481043_+	3-hydroxyacyl-ACP dehydratase FabZ	NA	NA	NA	NA	NA
WP_010930355.1|1481043_1481838_+	acyl-ACP--UDP-N-acetylglucosamine O-acyltransferase	NA	NA	NA	NA	NA
WP_010930356.1|1481834_1483016_+	lipid-A-disaccharide synthase	NA	NA	NA	NA	NA
WP_003811770.1|1483002_1483608_+	ribonuclease HII	NA	G9E3X7	Emiliania_huxleyi_virus	40.2	8.8e-26
WP_003811768.1|1483604_1484378_+	RNA methyltransferase	NA	NA	NA	NA	NA
WP_010930357.1|1484389_1485217_-	kinase/pyrophosphorylase	NA	NA	NA	NA	NA
WP_010930358.1|1485378_1487742_+	phosphoenolpyruvate synthase	NA	A0A1V0SGR7	Hokovirus	35.9	2.2e-165
WP_010930359.1|1487809_1488529_-	glutamine amidotransferase	NA	NA	NA	NA	NA
WP_003811761.1|1488652_1489078_+	NfeD family protein	NA	NA	NA	NA	NA
WP_005012067.1|1489112_1490063_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811759.1|1490180_1491107_+	paraslipin	NA	NA	NA	NA	NA
WP_010930360.1|1491172_1492330_+	GGDEF domain-containing protein	NA	A0A127AWB9	Bacillus_phage	36.2	2.3e-14
WP_003811754.1|1492310_1492778_-	SsrA-binding protein SmpB	NA	W5RAM5	Staphylococcus_phage	45.1	6.2e-27
WP_010930800.1|1492925_1493876_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811752.1|1493892_1494327_+	type II toxin-antitoxin system RatA family toxin	NA	NA	NA	NA	NA
WP_003811750.1|1494316_1494667_+	RnfH family protein	NA	NA	NA	NA	NA
WP_003811748.1|1494863_1496018_+	acyl-CoA dehydrogenase family protein	NA	NA	NA	NA	NA
WP_003811746.1|1496014_1497187_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003811743.1|1497234_1498128_+	3-hydroxyisobutyrate dehydrogenase	NA	NA	NA	NA	NA
WP_003811741.1|1498173_1498611_+	PaaI family thioesterase	NA	NA	NA	NA	NA
WP_010930362.1|1498670_1499360_+	VIT family protein	NA	NA	NA	NA	NA
WP_010930363.1|1499369_1500320_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_076879624.1|1500418_1501369_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 15
NZ_CP010264	Bordetella pertussis strain I656 chromosome, complete genome	4101762	1793939	1841954	4101762	tRNA,transposase	Moraxella_phage(18.18%)	42	NA	NA
WP_010930522.1|1793939_1794890_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|1794988_1795939_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930804.1|1796037_1798638_-	TRAP transporter fused permease subunit	NA	NA	NA	NA	NA
WP_003818658.1|1798744_1799749_-	TAXI family TRAP transporter solute-binding subunit	NA	NA	NA	NA	NA
WP_010930803.1|1799857_1801198_-	aspartate aminotransferase family protein	NA	A0A1V0SKB7	Klosneuvirus	22.8	8.8e-18
WP_003818661.1|1801238_1802267_-	MurR/RpiR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930802.1|1802462_1803008_+	winged helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010930801.1|1803004_1803565_+	diaminobutyrate acetyltransferase	NA	NA	NA	NA	NA
WP_010930048.1|1803663_1804614_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930523.1|1804651_1805239_+	YigZ family protein	NA	A0A1X9I5T8	Streptococcus_phage	35.8	4.7e-16
WP_003811007.1|1805256_1805640_-	thioredoxin family protein	NA	V9SJ74	Achromobacter_phage	25.8	8.1e-09
WP_003811011.1|1806999_1808292_-	NCS2 family permease	NA	A0A0R6PHV4	Moraxella_phage	36.0	1.7e-66
WP_010930524.1|1808426_1809467_+|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD	tRNA	A0A0R6PI74	Moraxella_phage	51.3	6.1e-91
WP_010929632.1|1809564_1810581_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003811015.1|1810848_1811496_-	glycerol-3-phosphate 1-O-acyltransferase PlsY	NA	NA	NA	NA	NA
WP_010930526.1|1811621_1812380_+	5'/3'-nucleotidase SurE	NA	A0A1B1ITZ2	uncultured_Mediterranean_phage	51.2	1.4e-68
WP_019247478.1|1812364_1813144_+	protein-L-isoaspartate(D-aspartate) O-methyltransferase	NA	A0A1B1IU40	uncultured_Mediterranean_phage	46.9	4.8e-32
WP_003811022.1|1813161_1814046_+	peptidoglycan DD-metalloendopeptidase family protein	NA	A0A292GJG6	Xanthomonas_phage	49.5	4.6e-15
WP_019248494.1|1814042_1814822_+	3'-5' exonuclease	NA	NA	NA	NA	NA
WP_010930528.1|1814926_1815526_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930529.1|1815814_1816567_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003816525.1|1816685_1818086_+	23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD	NA	A0A2K5B251	Erysipelothrix_phage	26.5	7.3e-31
WP_003816523.1|1818109_1818508_-	Cu(I)-responsive transcriptional regulator	NA	NA	NA	NA	NA
WP_003811035.1|1818683_1818884_+	heavy-metal-associated domain-containing protein	NA	NA	NA	NA	NA
WP_010930530.1|1819022_1819751_+	redoxin family protein	NA	A0A1D8KSL1	Synechococcus_phage	56.8	9.6e-43
WP_003816520.1|1819884_1821300_+	dihydrolipoyl dehydrogenase	NA	NA	NA	NA	NA
WP_003816518.1|1821303_1822167_-	23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ	NA	NA	NA	NA	NA
WP_004568486.1|1822179_1822929_-	glycerophosphodiester phosphodiesterase	NA	A0A2H4PGQ5	Escherichia_phage	27.8	1.5e-14
WP_019247881.1|1823111_1825127_+	SurA N-terminal domain-containing protein	NA	NA	NA	NA	NA
WP_019247882.1|1825108_1825777_-	arylesterase	NA	NA	NA	NA	NA
WP_005012067.1|1826551_1827502_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003813572.1|1827650_1827989_-	BON domain-containing protein	NA	NA	NA	NA	NA
WP_003813570.1|1828046_1828208_-	DUF1328 domain-containing protein	NA	NA	NA	NA	NA
WP_003813568.1|1828239_1828440_-	CsbD family protein	NA	NA	NA	NA	NA
WP_010930533.1|1828705_1831279_-	cyanophycin synthetase	NA	NA	NA	NA	NA
WP_019247811.1|1831349_1833899_-	cyanophycin synthetase	NA	NA	NA	NA	NA
WP_010930535.1|1836449_1836938_+	DUF1854 domain-containing protein	NA	NA	NA	NA	NA
WP_029443743.1|1837029_1838181_-	N-acetyltransferase	NA	NA	NA	NA	NA
WP_004566336.1|1838234_1839056_+	ferritin-like domain-containing protein	NA	NA	NA	NA	NA
WP_010930537.1|1839094_1840324_+	lytic murein transglycosylase	NA	NA	NA	NA	NA
WP_004566334.1|1840452_1840893_+	DUF937 domain-containing protein	NA	NA	NA	NA	NA
WP_005012808.1|1841003_1841954_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 16
NZ_CP010264	Bordetella pertussis strain I656 chromosome, complete genome	4101762	1903516	2034577	4101762	tRNA,protease,transposase	Klosneuvirus(18.75%)	119	NA	NA
WP_005013747.1|1903516_1904467_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930573.1|1904591_1905401_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010929577.1|1905601_1906552_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930574.1|1907825_1909043_+	four-carbon acid sugar kinase family protein	NA	NA	NA	NA	NA
WP_003818670.1|1910099_1911002_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930576.1|1911078_1911951_+	MOSC N-terminal beta barrel domain-containing protein	NA	NA	NA	NA	NA
WP_003818672.1|1912081_1912450_+	aspartate 1-decarboxylase	NA	NA	NA	NA	NA
WP_010930577.1|1912507_1913554_+	CDP-6-deoxy-delta-3,4-glucoseen reductase	NA	NA	NA	NA	NA
WP_010930578.1|1913749_1915006_+	D-amino acid dehydrogenase	NA	NA	NA	NA	NA
WP_003810623.1|1915010_1916348_+	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_003818676.1|1916497_1917454_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247555.1|1917556_1918489_-	acyclic terpene utilization AtuA family protein	NA	NA	NA	NA	NA
WP_019247554.1|1918604_1918925_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247553.1|1918917_1919277_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930581.1|1919324_1920899_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003810637.1|1920951_1921896_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010930582.1|1921913_1922744_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010930583.1|1922736_1924371_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	32.7	8.2e-18
WP_010930584.1|1924367_1925723_+	amidase	NA	NA	NA	NA	NA
WP_010930585.1|1926629_1928207_+	lipoprotein	NA	NA	NA	NA	NA
WP_010930586.1|1928210_1929485_+	type 4b pilus protein PilO2	NA	NA	NA	NA	NA
WP_010930587.1|1929582_1929957_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930588.1|1931672_1932806_+	general secretion pathway protein	NA	NA	NA	NA	NA
WP_003810661.1|1932843_1933449_+	prepilin-type N-terminal cleavage/methylation domain-containing protein	NA	NA	NA	NA	NA
WP_010930589.1|1933445_1934264_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930590.1|1934335_1936960_+|tRNA	alanine--tRNA ligase	tRNA	A0A1V0SK38	Klosneuvirus	39.4	1.7e-81
WP_004568544.1|1936946_1937201_+	sulfurtransferase TusA family protein	NA	NA	NA	NA	NA
WP_010930591.1|1937267_1937849_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010926757.1|1938152_1938413_+	30S ribosomal protein S16	NA	NA	NA	NA	NA
WP_014905757.1|1938578_1939202_+	ribosome maturation factor RimM	NA	NA	NA	NA	NA
WP_003816734.1|1939201_1939975_+|tRNA	tRNA (guanosine(37)-N1)-methyltransferase TrmD	tRNA	NA	NA	NA	NA
WP_010930593.1|1939971_1941180_-	aminotransferase class V-fold PLP-dependent enzyme	NA	NA	NA	NA	NA
WP_010930594.1|1941205_1941679_-	RidA family protein	NA	NA	NA	NA	NA
WP_005012067.1|1941752_1942703_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930796.1|1942801_1944151_-	two-component sensor histidine kinase	NA	NA	NA	NA	NA
WP_023852900.1|1944916_1945672_+	MipA/OmpV family protein	NA	NA	NA	NA	NA
WP_010930794.1|1945764_1948647_-|tRNA	valine--tRNA ligase	tRNA	A0A1V0SK04	Klosneuvirus	37.1	3.7e-138
WP_003810689.1|1948969_1949395_+	nucleoside-diphosphate kinase	NA	D2E8E1	Anguillid_herpesvirus	43.2	2.1e-21
WP_004568542.1|1949422_1950571_+	23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN	NA	NA	NA	NA	NA
WP_003810693.1|1950567_1951074_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010930793.1|1951080_1952376_+	flavodoxin-dependent (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase	NA	NA	NA	NA	NA
WP_023995843.1|1952434_1953721_+|tRNA	histidine--tRNA ligase	tRNA	NA	NA	NA	NA
WP_010930791.1|1953722_1954361_+	tetratricopeptide repeat protein	NA	NA	NA	NA	NA
WP_003810701.1|1954363_1955524_+	outer membrane protein assembly factor BamB	NA	NA	NA	NA	NA
WP_003810703.1|1955550_1956906_+	ribosome biogenesis GTPase Der	NA	NA	NA	NA	NA
WP_010930790.1|1956909_1957980_+	histidinol-phosphate transaminase	NA	A0A1X6WGT4	Pacmanvirus	25.7	2.5e-15
WP_003810707.1|1958118_1958355_+	RNA chaperone Hfq	NA	NA	NA	NA	NA
WP_010930789.1|1958442_1959549_+	GTPase HflX	NA	NA	NA	NA	NA
WP_010930788.1|1959514_1960819_+|protease	FtsH protease activity modulator HflK	protease	NA	NA	NA	NA
WP_010930787.1|1960837_1961737_+|protease	protease modulator HflC	protease	NA	NA	NA	NA
WP_010930786.1|1961920_1963078_+	ATP phosphoribosyltransferase regulatory subunit	NA	NA	NA	NA	NA
WP_023852902.1|1963154_1964450_+	adenylosuccinate synthase	NA	A0A160ER07	Powai_lake_megavirus	33.5	3.0e-63
WP_003810720.1|1964563_1965103_+	phosphoribosyltransferase	NA	NA	NA	NA	NA
WP_006218592.1|1965380_1965593_+	30S ribosomal protein S21	NA	NA	NA	NA	NA
WP_010930784.1|1965612_1967643_+	DNA primase	NA	A0A0K1LMQ9	Caulobacter_phage	41.9	1.0e-65
WP_124740709.1|1967668_1967863_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930783.1|1968328_1970611_+	RNA polymerase sigma factor RpoD	NA	A0A2I7SAT0	Vibrio_phage	30.1	3.2e-36
WP_003816708.1|1971020_1971320_-	hypothetical protein	NA	NA	NA	NA	NA
WP_047122784.1|1971604_1972018_+	transcriptional regulator	NA	A0A222YXG1	Escherichia_phage	59.0	3.8e-36
WP_005013747.1|1971977_1972928_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|1973026_1973977_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930782.1|1974176_1975262_+	AI-2E family transporter	NA	NA	NA	NA	NA
WP_003810400.1|1975277_1976039_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_170954295.1|1976035_1976995_-	ATP-binding cassette domain-containing protein	NA	A0A2H4PQG7	Staphylococcus_phage	33.6	1.7e-23
WP_010930780.1|1977057_1977558_-	N-acetyltransferase	NA	NA	NA	NA	NA
WP_010930779.1|1977590_1978334_-	sulfite exporter TauE/SafE family protein	NA	NA	NA	NA	NA
WP_010930778.1|1978429_1978669_-	membrane protein	NA	NA	NA	NA	NA
WP_010930777.1|1978682_1978835_-	lipoprotein	NA	NA	NA	NA	NA
WP_010930776.1|1978920_1980411_-	cytochrome c oxidase accessory protein CcoG	NA	NA	NA	NA	NA
WP_010930775.1|1980502_1981441_-	cytochrome-c oxidase, cbb3-type subunit III	NA	NA	NA	NA	NA
WP_003818560.1|1981437_1981614_-	cytochrome oxidase	NA	NA	NA	NA	NA
WP_003810383.1|1981616_1982279_-	cytochrome-c oxidase, cbb3-type subunit II	NA	NA	NA	NA	NA
WP_003810379.1|1983900_1984044_-	cbb3-type cytochrome oxidase assembly protein CcoS	NA	NA	NA	NA	NA
WP_010930774.1|1984040_1985015_-	membrane protein	NA	NA	NA	NA	NA
WP_005012067.1|1985181_1986132_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930773.1|1986128_1987403_-	adenosylmethionine--8-amino-7-oxononanoate transaminase	NA	A0A1V0SKB7	Klosneuvirus	28.9	9.6e-14
WP_010930772.1|1987506_1988700_+	8-amino-7-oxononanoate synthase	NA	NA	NA	NA	NA
WP_010930771.1|1988696_1989350_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_010930770.1|1989346_1990783_+	dethiobiotin synthase	NA	NA	NA	NA	NA
WP_010930769.1|1990770_1991130_+	CidA/LrgA family protein	NA	NA	NA	NA	NA
WP_162268681.1|1991944_1992085_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|1992102_1993053_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930768.1|1994098_1995964_-	sigma-54-dependent Fis family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930767.1|1996221_1997742_+	aldehyde dehydrogenase	NA	NA	NA	NA	NA
WP_003816959.1|1997829_1998480_-	NAD(P)H-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010930766.1|1999428_2000724_+	DUF445 domain-containing protein	NA	NA	NA	NA	NA
WP_010930765.1|2000745_2001630_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930764.1|2001728_2002604_+	PhzF family phenazine biosynthesis protein	NA	NA	NA	NA	NA
WP_003816964.1|2002593_2002950_-	DUF1428 domain-containing protein	NA	NA	NA	NA	NA
WP_010930763.1|2003080_2004055_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003812228.1|2004184_2004364_-	DUF3008 family protein	NA	NA	NA	NA	NA
WP_029443822.1|2004461_2004986_+	DUF302 domain-containing protein	NA	NA	NA	NA	NA
WP_010930761.1|2004996_2005833_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003816971.1|2005945_2006317_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010930760.1|2006313_2006865_+	SRPBCC family protein	NA	NA	NA	NA	NA
WP_003816975.1|2006880_2008572_-	STAS domain-containing protein	NA	A0A2H4J153	uncultured_Caudovirales_phage	27.3	5.0e-42
WP_003816977.1|2008620_2009301_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_014905663.1|2009548_2010013_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930758.1|2010182_2011112_+	ZIP family metal transporter	NA	NA	NA	NA	NA
WP_019247659.1|2011124_2011772_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023997035.1|2011845_2013663_-	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	27.4	2.3e-37
WP_005012067.1|2013746_2014697_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929577.1|2015349_2016300_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812199.1|2016318_2016666_-	GFA family protein	NA	NA	NA	NA	NA
WP_010930755.1|2016694_2018134_-	MFS transporter	NA	A0A0M3UL24	Mycobacterium_phage	37.4	7.4e-55
WP_010930754.1|2018152_2018548_-	VOC family protein	NA	NA	NA	NA	NA
WP_003812191.1|2018722_2019331_+	LON peptidase substrate-binding domain-containing protein	NA	NA	NA	NA	NA
WP_010930753.1|2019343_2020162_+	hypothetical protein	NA	A0A1B1INV8	uncultured_Mediterranean_phage	28.8	2.3e-16
WP_010930752.1|2020113_2021088_-	AraC family transcriptional regulator	NA	NA	NA	NA	NA
WP_003812183.1|2021116_2022178_-	XdhC family protein	NA	NA	NA	NA	NA
WP_010930751.1|2022174_2024391_-	xanthine dehydrogenase family protein molybdopterin-binding subunit	NA	NA	NA	NA	NA
WP_010930750.1|2024404_2024863_-	(2Fe-2S)-binding protein	NA	NA	NA	NA	NA
WP_003812179.1|2025020_2025365_-	exported protein	NA	NA	NA	NA	NA
WP_010930749.1|2025521_2026427_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930748.1|2026513_2027527_+	pyridoxamine 5'-phosphate oxidase family protein	NA	NA	NA	NA	NA
WP_010930153.1|2029506_2030523_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_019247707.1|2030665_2032018_-	glutathione-disulfide reductase	NA	A0A2K5B2C5	Erysipelothrix_phage	27.6	2.9e-45
WP_003812172.1|2032192_2032489_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|2033626_2034577_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 17
NZ_CP010264	Bordetella pertussis strain I656 chromosome, complete genome	4101762	2046073	2110442	4101762	transposase	Vibrio_phage(20.0%)	51	NA	NA
WP_005013747.1|2046073_2047024_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005015810.1|2047245_2048196_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012808.1|2048294_2049245_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023852887.1|2049343_2050309_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930740.1|2050446_2051346_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930739.1|2053940_2055428_+	hydroxymethylglutaryl-CoA synthase family protein	NA	NA	NA	NA	NA
WP_014486081.1|2055438_2056635_+	acetyl-CoA acetyltransferase	NA	NA	NA	NA	NA
WP_003816680.1|2056707_2058027_+	AMP-binding protein	NA	NA	NA	NA	NA
WP_010930737.1|2058023_2058899_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_010930736.1|2058929_2060078_-	CoA transferase	NA	NA	NA	NA	NA
WP_010930735.1|2060095_2060410_-	2Fe-2S iron-sulfur cluster binding domain-containing protein	NA	NA	NA	NA	NA
WP_003816687.1|2060431_2061154_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_003816690.1|2061153_2061972_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003816691.1|2061976_2062504_-	aromatic-ring-hydroxylating dioxygenase subunit beta	NA	NA	NA	NA	NA
WP_010930733.1|2062509_2063766_-	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA	NA
WP_010930732.1|2064124_2065264_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930731.1|2065341_2066214_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010930730.1|2067084_2068035_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930729.1|2067994_2068630_-	membrane protein	NA	NA	NA	NA	NA
WP_010930728.1|2068989_2070312_-	isocitrate lyase	NA	NA	NA	NA	NA
WP_010930727.1|2070630_2071452_+	NADPH-dependent 7-cyano-7-deazaguanine reductase QueF	NA	A0A2I7SAX1	Vibrio_phage	37.6	4.1e-42
WP_003810356.1|2072876_2073449_-	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	NA	NA	NA	NA	NA
WP_010930726.1|2073488_2075318_-	excinuclease ABC subunit UvrC	NA	NA	NA	NA	NA
WP_010930725.1|2075280_2076339_-	beta-N-acetylhexosaminidase	NA	NA	NA	NA	NA
WP_010930724.1|2076376_2076838_-	holo-ACP synthase	NA	NA	NA	NA	NA
WP_003810344.1|2076922_2077669_-	pyridoxine 5'-phosphate synthase	NA	NA	NA	NA	NA
WP_019247651.1|2079159_2082390_-	multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_019248531.1|2082456_2083788_-	efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
WP_010930721.1|2084040_2084415_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010930720.1|2084517_2085696_-	patatin-like phospholipase family protein	NA	NA	NA	NA	NA
WP_003810329.1|2085706_2086297_-	DUF4136 domain-containing protein	NA	NA	NA	NA	NA
WP_003818535.1|2086407_2087214_+	TOBE domain-containing protein	NA	NA	NA	NA	NA
WP_010930719.1|2087239_2088034_-	ABC transporter ATP-binding protein	NA	A0A1V0SE00	Indivirus	25.7	5.1e-05
WP_010930718.1|2089034_2090009_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003818533.1|2090167_2090680_-	superoxide dismutase family protein	NA	Q9MC02	Salmonella_phage	52.3	1.8e-43
WP_003818532.1|2090836_2091808_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930717.1|2093552_2094359_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010930716.1|2094355_2095657_-	malonyl-CoA decarboxylase family protein	NA	NA	NA	NA	NA
WP_010930715.1|2095607_2096372_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930714.1|2096485_2097256_-	spermidine synthase	NA	NA	NA	NA	NA
WP_010930713.1|2097340_2098528_-	acetyl-CoA C-acyltransferase family protein	NA	NA	NA	NA	NA
WP_003818524.1|2098600_2098975_-	tautomerase family protein	NA	NA	NA	NA	NA
WP_003810308.1|2099075_2100338_-	glycine betaine/L-proline ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	36.6	6.8e-28
WP_003810306.1|2100334_2101192_-	proline/glycine betaine ABC transporter permease	NA	NA	NA	NA	NA
WP_003818523.1|2101364_2102366_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929591.1|2102817_2103768_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930712.1|2105283_2106483_+	multidrug effflux MFS transporter	NA	NA	NA	NA	NA
WP_003810297.1|2106851_2107088_+	50S ribosomal protein L28	NA	NA	NA	NA	NA
WP_010930711.1|2107151_2107319_+	50S ribosomal protein L33	NA	NA	NA	NA	NA
WP_010930710.1|2107432_2109238_-	STAS domain-containing protein	NA	A0A2H4J153	uncultured_Caudovirales_phage	27.5	2.2e-19
WP_062826579.1|2109491_2110442_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 18
NZ_CP010264	Bordetella pertussis strain I656 chromosome, complete genome	4101762	2297959	2359307	4101762	tRNA,transposase	Yellowstone_lake_phycodnavirus(12.5%)	52	NA	NA
WP_005013747.1|2297959_2298910_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811701.1|2299026_2299746_+	FadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930605.1|2299918_2300905_+	DctP family TRAP transporter solute-binding subunit	NA	NA	NA	NA	NA
WP_010930604.1|2300905_2301388_+	TRAP transporter small permease	NA	NA	NA	NA	NA
WP_003811706.1|2301391_2302675_+	TRAP transporter large permease	NA	NA	NA	NA	NA
WP_003811709.1|2302671_2303610_+	citrate lyase subunit beta	NA	NA	NA	NA	NA
WP_010930603.1|2303606_2305316_+	thiamine pyrophosphate-binding protein	NA	A0A0P0YLY7	Yellowstone_lake_phycodnavirus	27.3	5.9e-35
WP_010930602.1|2305325_2306573_+	Zn-dependent hydrolase	NA	NA	NA	NA	NA
WP_003811716.1|2308183_2309473_-	Glu/Leu/Phe/Val dehydrogenase	NA	NA	NA	NA	NA
WP_020699606.1|2310610_2311369_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	37.9	6.7e-31
WP_010930601.1|2312045_2312789_-	glutamine ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930600.1|2312863_2313604_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930599.1|2313799_2314636_-	ankyrin repeat domain-containing protein	NA	NA	NA	NA	NA
WP_010930598.1|2314686_2315457_-	TatD family hydrolase	NA	NA	NA	NA	NA
WP_010930597.1|2315506_2316559_-	DNA polymerase III subunit delta'	NA	NA	NA	NA	NA
WP_003811733.1|2316555_2317182_-	dTMP kinase	NA	A0A1L2BX49	Bacteriophage	35.1	1.6e-22
WP_010930596.1|2317178_2318213_-	endolytic transglycosylase MltG	NA	NA	NA	NA	NA
WP_010930595.1|2318391_2319408_+	folate-binding protein YgfZ	NA	NA	NA	NA	NA
WP_005012067.1|2319506_2320457_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930797.1|2323197_2324487_-	D-amino acid dehydrogenase	NA	NA	NA	NA	NA
WP_010930798.1|2324605_2325043_-	Rrf2 family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930799.1|2325086_2326295_-	NO-inducible flavohemoprotein	NA	NA	NA	NA	NA
WP_003810867.1|2326441_2326906_+	GatB/YqeY domain-containing protein	NA	A0A0K2FLI9	Brevibacillus_phage	32.4	3.9e-05
WP_014905945.1|2326929_2327880_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930521.1|2328864_2329638_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010930520.1|2329634_2330633_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930519.1|2330717_2331494_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	34.2	1.2e-30
WP_010930518.1|2331649_2333254_-	ABC-F family ATPase	NA	A0A1V0SKJ1	Klosneuvirus	28.9	1.2e-53
WP_003816541.1|2333634_2334759_+	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003810992.1|2334885_2335509_+	TRAP transporter small permease subunit	NA	NA	NA	NA	NA
WP_010930517.1|2335505_2337407_+	TRAP transporter large permease subunit	NA	NA	NA	NA	NA
WP_010930516.1|2337455_2338250_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010930515.1|2338262_2339264_-	muramoyltetrapeptide carboxypeptidase	NA	NA	NA	NA	NA
WP_004568494.1|2339260_2339767_-|tRNA	tRNA adenosine(34) deaminase TadA	tRNA	S4VYT2	Pandoravirus	38.4	3.4e-07
WP_010930513.1|2339759_2340608_-	haloacid dehalogenase-like hydrolase	NA	NA	NA	NA	NA
WP_019247780.1|2340705_2341248_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|2341291_2342242_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930511.1|2342397_2342724_-	cation:proton antiporter	NA	NA	NA	NA	NA
WP_003810975.1|2342720_2343005_-	K+/H+ antiporter subunit F	NA	NA	NA	NA	NA
WP_010930510.1|2343001_2343481_-	Na+/H+ antiporter subunit E	NA	NA	NA	NA	NA
WP_004568496.1|2343477_2345106_-	monovalent cation/H+ antiporter subunit D	NA	NA	NA	NA	NA
WP_003810969.1|2345102_2345447_-	Na+/H+ antiporter subunit C	NA	NA	NA	NA	NA
WP_010930509.1|2345446_2348380_-	monovalent cation/H+ antiporter subunit A	NA	NA	NA	NA	NA
WP_010929588.1|2349538_2350489_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811452.1|2350587_2350884_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930508.1|2350990_2351908_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930507.1|2351912_2352626_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930506.1|2352639_2353611_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019249653.1|2355330_2355711_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010930504.1|2355714_2356902_+	MFS transporter	NA	NA	NA	NA	NA
WP_170954298.1|2357325_2358063_+	arsenical resistance protein ArsH	NA	A0A2H4J5V6	uncultured_Caudovirales_phage	68.2	1.3e-87
WP_005013747.1|2358356_2359307_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 19
NZ_CP010264	Bordetella pertussis strain I656 chromosome, complete genome	4101762	2380098	2449754	4101762	transposase	Tetraselmis_virus(10.0%)	53	NA	NA
WP_005012067.1|2380098_2381049_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023852967.1|2381601_2383227_-	arylsulfatase	NA	A0A2P0VMN7	Tetraselmis_virus	52.2	2.0e-149
WP_010930475.1|2383276_2384311_-	haloacid dehalogenase-like hydrolase	NA	NA	NA	NA	NA
WP_010930476.1|2384313_2385660_-	BatD family protein	NA	NA	NA	NA	NA
WP_010930477.1|2385656_2387171_-	VWA domain-containing protein	NA	NA	NA	NA	NA
WP_010930478.1|2387161_2388172_-	VWA domain-containing protein	NA	NA	NA	NA	NA
WP_010930479.1|2388645_2389587_-	DUF58 domain-containing protein	NA	NA	NA	NA	NA
WP_010930480.1|2389595_2390564_-	AAA family ATPase	NA	NA	NA	NA	NA
WP_010930481.1|2392103_2393072_+	transporter	NA	NA	NA	NA	NA
WP_010930482.1|2393249_2394239_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010926609.1|2394285_2395044_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930483.1|2395233_2395971_+	TerC family protein	NA	A0A0S4KZH7	Pseudomonas_phage	46.6	4.1e-41
WP_005012808.1|2396069_2397020_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003816696.1|2397204_2397987_+	ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	25.8	2.0e-09
WP_003810743.1|2397980_2398682_+	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
WP_003810741.1|2398921_2399524_+	TetR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005013747.1|2400850_2401801_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014486074.1|2401797_2403354_-	LTA synthase family protein	NA	NA	NA	NA	NA
WP_010930486.1|2403346_2404120_-	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_005013747.1|2404178_2405129_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023852812.1|2405210_2406386_-	capsular biosynthesis protein	NA	NA	NA	NA	NA
WP_010930473.1|2406399_2408457_-	capsular polysaccharide biosynthesis protein	NA	NA	NA	NA	NA
WP_010930472.1|2408453_2409479_-	Vi polysaccharide biosynthesis UDP-N-acetylglucosaminuronic acid C-4 epimerase TviC	NA	A0A2K9L4U8	Tupanvirus	44.2	4.7e-72
WP_003811224.1|2410398_2411289_-	capsular polysaccharide biosynthesis protein	NA	NA	NA	NA	NA
WP_010930469.1|2411285_2413370_-	glycosyltransferase	NA	NA	NA	NA	NA
WP_010930468.1|2413401_2414571_-	capsule polysaccharide transporter	NA	NA	NA	NA	NA
WP_014486073.1|2414612_2415353_-	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
WP_010930466.1|2415352_2416123_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_019247171.1|2416447_2416615_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930465.1|2416978_2417764_+	glycosyltransferase family 2 protein	NA	A0A1V0SAH6	Catovirus	32.0	1.1e-12
WP_010930464.1|2417790_2419875_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247170.1|2420042_2421998_+	capsular polysaccharide biosynthesis protein	NA	NA	NA	NA	NA
WP_003811209.1|2422321_2422822_-	DNA starvation/stationary phase protection protein	NA	W5S6G8	Pithovirus	35.5	6.4e-14
WP_010930461.1|2422920_2424447_-	CoA-acylating methylmalonate-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
WP_010930460.1|2424584_2425472_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811203.1|2425486_2426440_-	LysR family transcriptional regulator	NA	A0A2P0ZL89	Lactobacillus_phage	26.5	7.2e-14
WP_033446218.1|2426491_2428582_-	ATP-dependent DNA helicase RecG	NA	NA	NA	NA	NA
WP_010930458.1|2428597_2428984_-	reactive intermediate/imine deaminase	NA	NA	NA	NA	NA
WP_010930457.1|2431677_2432481_-	2,5-didehydrogluconate reductase DkgB	NA	A0A2H4PQR8	Staphylococcus_phage	32.4	2.0e-33
WP_010930456.1|2433774_2434677_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811187.1|2434741_2435518_-	ferredoxin--NADP reductase	NA	NA	NA	NA	NA
WP_010930455.1|2435839_2436889_+	Fe(3+) ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930454.1|2437012_2438683_+	iron ABC transporter permease	NA	NA	NA	NA	NA
WP_019248220.1|2438687_2439482_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	29.4	8.3e-16
WP_005012808.1|2439580_2440531_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930450.1|2440552_2441773_+	oxygen-independent coproporphyrinogen III oxidase-like protein	NA	NA	NA	NA	NA
WP_003811164.1|2441958_2443371_+	type I glutamate--ammonia ligase	NA	NA	NA	NA	NA
WP_003811167.1|2443434_2444502_+	PAS domain-containing protein	NA	Q8QKV7	Ectocarpus_siliculosus_virus	23.5	1.1e-05
WP_010930451.1|2444501_2445989_+	nitrogen regulation protein NR(I)	NA	NA	NA	NA	NA
WP_010930452.1|2445998_2446943_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811176.1|2447102_2447801_+	pirin family protein	NA	NA	NA	NA	NA
WP_010930453.1|2447878_2448784_+	pirin family protein	NA	NA	NA	NA	NA
WP_005012067.1|2448803_2449754_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 20
NZ_CP010264	Bordetella pertussis strain I656 chromosome, complete genome	4101762	2533954	2585126	4101762	tRNA,transposase	Salmonella_phage(20.0%)	48	NA	NA
WP_005012067.1|2533954_2534905_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812577.1|2535003_2535774_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	39.5	8.3e-29
WP_010930397.1|2535770_2536442_-	ectoine/hydroxyectoine ABC transporter permease subunit EhuD	NA	NA	NA	NA	NA
WP_003812581.1|2536438_2537080_-	ectoine/hydroxyectoine ABC transporter permease subunit EhuC	NA	NA	NA	NA	NA
WP_010930396.1|2537092_2538013_-	ectoine/hydroxyectoine ABC transporter substrate-binding protein EhuB	NA	NA	NA	NA	NA
WP_010930395.1|2538173_2539334_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930394.1|2539375_2540326_-	ornithine cyclodeaminase family protein	NA	NA	NA	NA	NA
WP_169507376.1|2540990_2541191_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930392.1|2541313_2543008_-	phosphoenolpyruvate--protein phosphotransferase	NA	NA	NA	NA	NA
WP_003812598.1|2543129_2543399_-	HPr family phosphocarrier protein	NA	NA	NA	NA	NA
WP_003812601.1|2543514_2543913_-	PTS mannose transporter subunit IIA	NA	NA	NA	NA	NA
WP_010930391.1|2543923_2544880_-	glutathione synthase	NA	NA	NA	NA	NA
WP_033446215.1|2545016_2545562_-	translation initiation factor IF-3	NA	A0A2L0UZ54	Agrobacterium_phage	29.9	9.1e-14
WP_003812608.1|2545582_2547532_-|tRNA	threonine--tRNA ligase	tRNA	A0A2K9L297	Tupanvirus	36.0	4.1e-125
WP_019248759.1|2547919_2548696_+	response regulator transcription factor	NA	NA	NA	NA	NA
WP_003812612.1|2548701_2549094_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|2549515_2550466_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930389.1|2550462_2551560_-	sensor domain-containing diguanylate cyclase	NA	A0A127AWB9	Bacillus_phage	37.3	3.5e-20
WP_076879548.1|2551591_2552542_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814009.1|2554323_2555565_-	MFS transporter	NA	NA	NA	NA	NA
WP_003814010.1|2555576_2556350_-	peroxide stress protein YaaA	NA	NA	NA	NA	NA
WP_005012067.1|2556376_2557327_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814011.1|2557425_2558208_-	3-hydroxybutyrate dehydrogenase	NA	NA	NA	NA	NA
WP_003814012.1|2558296_2559523_-	cation:proton antiporter	NA	NA	NA	NA	NA
WP_003814013.1|2560248_2561634_+	alcaligin siderophore biosynthesis protein AlcA	NA	NA	NA	NA	NA
WP_003814014.1|2561652_2562258_+	alcaligin siderophore biosynthesis protein AlcB	NA	NA	NA	NA	NA
WP_010930939.1|2562254_2564111_+	alcaligin siderophore biosynthesis protein AlcC	NA	NA	NA	NA	NA
WP_003814016.1|2564107_2564908_+	alcaligin siderophore biosynthesis protein AlcD	NA	NA	NA	NA	NA
WP_005013753.1|2564922_2566116_+	alcaligin siderophore biosynthesis protein AlcE	NA	NA	NA	NA	NA
WP_003814017.1|2566183_2567158_+	alcaligin siderophore biosynthesis transcriptional regulator AlcR	NA	NA	NA	NA	NA
WP_010930940.1|2567280_2568504_+	alcaligin siderophore export MFS transporter Bcr	NA	S4TR35	Salmonella_phage	29.4	9.8e-24
WP_010930941.1|2568614_2570819_+	TonB-dependent alcaligin siderophore receptor FauA	NA	NA	NA	NA	NA
WP_003814020.1|2571113_2571773_+	NAAT family transporter	NA	NA	NA	NA	NA
WP_019247690.1|2571780_2571987_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003814021.1|2572325_2573081_+	GGDEF domain-containing protein	NA	NA	NA	NA	NA
WP_003814022.1|2573096_2573258_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003814023.1|2573351_2573867_+	hypothetical protein	NA	T1SAR8	Salmonella_phage	44.6	5.1e-06
WP_003814024.1|2574139_2574457_+	virulence factor	NA	NA	NA	NA	NA
WP_170954289.1|2574401_2575046_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930944.1|2575171_2576527_-|tRNA	serine--tRNA ligase	tRNA	A0A1B1IVT2	uncultured_Mediterranean_phage	47.5	1.6e-83
WP_010930945.1|2576573_2577914_-	replication-associated recombination protein A	NA	G3MBE0	Bacillus_virus	38.9	1.6e-75
WP_010930946.1|2578015_2578648_-	outer membrane lipoprotein chaperone LolA	NA	NA	NA	NA	NA
WP_003814032.1|2578647_2581008_-	DNA translocase FtsK	NA	S5VNE3	Mycobacterium_phage	48.0	7.6e-81
WP_010930948.1|2581049_2582009_+	thioredoxin-disulfide reductase	NA	A0A2I2L5E1	Orpheovirus	40.2	3.1e-57
WP_010929073.1|2581995_2582682_+	Smr/MutS family protein	NA	NA	NA	NA	NA
WP_005015014.1|2582678_2583011_+	multidrug transporter	NA	NA	NA	NA	NA
WP_005012067.1|2583126_2584077_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929577.1|2584175_2585126_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 21
NZ_CP010264	Bordetella pertussis strain I656 chromosome, complete genome	4101762	2683421	2724090	4101762	tRNA,transposase	Salmonella_phage(33.33%)	42	NA	NA
WP_010929591.1|2683421_2684372_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_004567479.1|2684482_2684665_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931004.1|2684764_2685361_-	lipoprotein	NA	NA	NA	NA	NA
WP_010931005.1|2685544_2686636_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003812822.1|2687135_2687546_-	MerR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931006.1|2687604_2687946_-	integration host factor subunit alpha	NA	A0A0H3UZA0	Geobacillus_virus	42.2	2.8e-13
WP_010931007.1|2687951_2690369_-|tRNA	phenylalanine--tRNA ligase subunit beta	tRNA	NA	NA	NA	NA
WP_010926359.1|2690381_2691404_-|tRNA	phenylalanine--tRNA ligase subunit alpha	tRNA	A0A2H4UW22	Bodo_saltans_virus	38.6	1.0e-26
WP_003812832.1|2691478_2691838_-	50S ribosomal protein L20	NA	NA	NA	NA	NA
WP_003812834.1|2691853_2692051_-	50S ribosomal protein L35	NA	NA	NA	NA	NA
WP_010929584.1|2692386_2693337_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003816756.1|2693531_2693981_+	dUTP diphosphatase	NA	S4TNT3	Salmonella_phage	67.2	3.7e-45
WP_005012808.1|2693977_2694928_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931008.1|2695038_2696487_+	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
WP_010931009.1|2696601_2696883_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|2696986_2697937_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003820420.1|2698181_2698895_-	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_019247724.1|2699017_2699245_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_003816758.1|2699539_2700178_-	DedA family protein	NA	NA	NA	NA	NA
WP_010931011.1|2700286_2701321_+	metal-dependent hydrolase	NA	NA	NA	NA	NA
WP_010929591.1|2701317_2702268_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931012.1|2702683_2703208_-	DNA-binding protein	NA	J9Q7G7	Salmonella_phage	32.9	6.5e-09
WP_004567322.1|2703211_2703481_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931013.1|2703679_2704741_-	LacI family DNA-binding transcriptional regulator	NA	NA	NA	NA	NA
WP_010931014.1|2704824_2706459_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	31.1	2.9e-15
WP_010931015.1|2706460_2707264_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931016.1|2707292_2708252_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931017.1|2708255_2709770_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019248147.1|2709806_2710811_-	M20/M25/M40 family metallo-hydrolase	NA	NA	NA	NA	NA
WP_010931018.1|2711242_2711713_-	DUF1801 domain-containing protein	NA	NA	NA	NA	NA
WP_010931019.1|2711748_2712360_-	LysE family translocator	NA	NA	NA	NA	NA
WP_010931020.1|2712390_2713014_-	FMN-binding negative transcriptional regulator	NA	NA	NA	NA	NA
WP_010931021.1|2713094_2714627_+	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
WP_010931022.1|2714661_2715903_-	MFS transporter	NA	NA	NA	NA	NA
WP_010931023.1|2715946_2716978_-	alcohol dehydrogenase catalytic domain-containing protein	NA	A0A2K9L339	Tupanvirus	27.8	1.8e-26
WP_010931024.1|2716974_2718144_-	FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010931025.1|2718137_2718818_-	cupin domain-containing protein	NA	NA	NA	NA	NA
WP_010931026.1|2718979_2719822_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931027.1|2719984_2720956_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010931028.1|2721127_2722006_+	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
WP_010931029.1|2722028_2723099_-	FUSC family protein	NA	NA	NA	NA	NA
WP_005013747.1|2723139_2724090_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 22
NZ_CP010264	Bordetella pertussis strain I656 chromosome, complete genome	4101762	2779555	2852425	4101762	tRNA,transposase	Moraxella_phage(16.67%)	58	NA	NA
WP_003810909.1|2779555_2779972_-|tRNA	aminoacyl-tRNA hydrolase	tRNA	NA	NA	NA	NA
WP_010931061.1|2780082_2780715_+	7-carboxy-7-deazaguanine synthase	NA	NA	NA	NA	NA
WP_010931062.1|2780743_2781187_+	6-carboxytetrahydropterin synthase QueD	NA	NA	NA	NA	NA
WP_003810897.1|2781208_2782300_-	TRAP transporter substrate-binding protein DctP	NA	NA	NA	NA	NA
WP_010931063.1|2782354_2783155_-	aldolase	NA	NA	NA	NA	NA
WP_010931064.1|2783290_2783911_+	cupin domain-containing protein	NA	NA	NA	NA	NA
WP_010931065.1|2784050_2784524_+	MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|2785663_2786614_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931066.1|2786610_2794272_-	hemagglutinin repeat-containing protein	NA	A0A0R6PJK4	Moraxella_phage	30.9	7.3e-24
WP_010931067.1|2794512_2798559_-	phosphoribosylformylglycinamidine synthase	NA	A9YX36	Burkholderia_phage	67.4	6.3e-160
WP_003816847.1|2798871_2799453_+	TRAP transporter small permease	NA	NA	NA	NA	NA
WP_010931068.1|2799449_2800748_+	TRAP transporter large permease	NA	NA	NA	NA	NA
WP_010931069.1|2800827_2801856_+	DctP family TRAP transporter solute-binding subunit	NA	NA	NA	NA	NA
WP_010931070.1|2802116_2803067_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010927663.1|2803063_2804014_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931071.1|2804330_2804936_+	fimbrial major subunit FimX	NA	NA	NA	NA	NA
WP_010931072.1|2804989_2806303_-	phenylacetate--CoA ligase	NA	NA	NA	NA	NA
WP_003813284.1|2806377_2806848_-	hydroxyphenylacetyl-CoA thioesterase PaaI	NA	NA	NA	NA	NA
WP_010931073.1|2806847_2807636_-	2-(1,2-epoxy-1,2-dihydrophenyl)acetyl-CoA isomerase	NA	NA	NA	NA	NA
WP_010931074.1|2807646_2809299_-	phenylacetic acid degradation protein PaaN	NA	NA	NA	NA	NA
WP_010929591.1|2809386_2810337_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931075.1|2811498_2812005_-	phenylacetate-CoA oxygenase subunit PaaJ	NA	NA	NA	NA	NA
WP_003813293.1|2812001_2812766_-	phenylacetate-CoA oxygenase subunit PaaC	NA	NA	NA	NA	NA
WP_010931076.1|2812781_2813066_-	1,2-phenylacetyl-CoA epoxidase subunit B	NA	NA	NA	NA	NA
WP_003813298.1|2813130_2814120_-	1,2-phenylacetyl-CoA epoxidase subunit A	NA	NA	NA	NA	NA
WP_010931077.1|2814291_2815221_+	phenylacetic acid degradation operon negative regulatory protein PaaX	NA	NA	NA	NA	NA
WP_003813302.1|2815192_2815879_-	NAD(P)H-hydrate epimerase	NA	NA	NA	NA	NA
WP_003813303.1|2815912_2816458_-	oligoribonuclease	NA	Q8B5Y0	Diachasmimorpha_longicaudata_entomopoxvirus	37.7	2.1e-26
WP_003813306.1|2816502_2817768_+	M48 family metallopeptidase	NA	NA	NA	NA	NA
WP_003813309.1|2817764_2818667_+	ribosome small subunit-dependent GTPase A	NA	NA	NA	NA	NA
WP_019247679.1|2819848_2820793_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931079.1|2820887_2822405_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931080.1|2822446_2824075_-	gamma-glutamyltransferase	NA	NA	NA	NA	NA
WP_003811986.1|2824182_2825064_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931081.1|2828176_2828551_+	endonuclease	NA	F4YXR7	Roseobacter_phage	54.4	2.1e-25
WP_003812004.1|2828575_2828914_-	P-II family nitrogen regulator	NA	NA	NA	NA	NA
WP_010931082.1|2828957_2830592_-	NAD+ synthase	NA	A0A2L0UZF5	Agrobacterium_phage	36.6	8.3e-87
WP_010931083.1|2830630_2831977_-	mechanosensitive ion channel family protein	NA	NA	NA	NA	NA
WP_003812010.1|2832084_2833506_+	argininosuccinate lyase	NA	NA	NA	NA	NA
WP_010931084.1|2833575_2834160_-	nitroreductase	NA	NA	NA	NA	NA
WP_005012067.1|2834262_2835213_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931085.1|2835347_2836454_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010931086.1|2836464_2837562_+	GTP 3',8-cyclase MoaA	NA	NA	NA	NA	NA
WP_010931087.1|2837706_2838912_-	molybdopterin molybdotransferase MoeA	NA	NA	NA	NA	NA
WP_010931088.1|2838918_2839440_-	molybdenum cofactor biosynthesis protein B	NA	NA	NA	NA	NA
WP_010931089.1|2839436_2839928_-	molybdenum cofactor biosynthesis protein MoaE	NA	NA	NA	NA	NA
WP_003819740.1|2839924_2840176_-	MoaD/ThiS family protein	NA	NA	NA	NA	NA
WP_003819741.1|2840156_2840642_-	cyclic pyranopterin monophosphate synthase MoaC	NA	NA	NA	NA	NA
WP_010931090.1|2840777_2844239_+	DUF748 domain-containing protein	NA	NA	NA	NA	NA
WP_010931091.1|2844256_2845141_+	dienelactone hydrolase family protein	NA	NA	NA	NA	NA
WP_010931092.1|2845150_2845582_-	lipoprotein	NA	NA	NA	NA	NA
WP_003809348.1|2845828_2846332_+	peroxiredoxin	NA	M1I839	Pelagibacter_phage	44.1	1.8e-24
WP_010931094.1|2846409_2847810_+	MFS transporter	NA	NA	NA	NA	NA
WP_010931095.1|2847884_2848760_-	membrane protein	NA	NA	NA	NA	NA
WP_023853546.1|2848756_2849764_-	biotin synthase BioB	NA	NA	NA	NA	NA
WP_010931097.1|2850231_2850537_+	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
WP_003819753.1|2850627_2851218_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930525.1|2851408_2852425_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
>prophage 23
NZ_CP010264	Bordetella pertussis strain I656 chromosome, complete genome	4101762	2855568	2922380	4101762	protease,transposase	uncultured_Mediterranean_phage(28.57%)	49	NA	NA
WP_023995489.1|2855568_2856519_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|2856617_2857568_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931099.1|2857564_2858359_-	N-formylglutamate deformylase	NA	NA	NA	NA	NA
WP_010931100.1|2858390_2859095_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010931101.1|2859169_2859970_-	SURF1 family protein	NA	NA	NA	NA	NA
WP_003809276.1|2859966_2860374_-	cytochrome o ubiquinol oxidase subunit IV	NA	NA	NA	NA	NA
WP_003819722.1|2860370_2861012_-	cytochrome o ubiquinol oxidase subunit III	NA	NA	NA	NA	NA
WP_010931102.1|2861004_2863005_-	cytochrome o ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
WP_010931103.1|2864265_2865597_+	MFS transporter	NA	NA	NA	NA	NA
WP_005012067.1|2865593_2866544_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931105.1|2868250_2868517_-	accessory factor UbiK family protein	NA	NA	NA	NA	NA
WP_003812839.1|2869224_2869563_+	P-II family nitrogen regulator	NA	NA	NA	NA	NA
WP_010931107.1|2874117_2874720_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931108.1|2874816_2876106_+	MFS transporter	NA	NA	NA	NA	NA
WP_003812846.1|2876163_2876895_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	31.0	1.4e-12
WP_010931109.1|2876891_2877695_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	23.5	7.9e-14
WP_003812851.1|2877691_2878780_-	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
WP_003820410.1|2878776_2879706_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003812857.1|2879854_2881000_-	branched-chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930800.1|2881021_2881972_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931110.1|2882302_2886124_-	trifunctional transcriptional regulator/proline dehydrogenase/L-glutamate gamma-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
WP_010931111.1|2886280_2886949_-	membrane integrity-associated transporter subunit PqiC	NA	NA	NA	NA	NA
WP_014905522.1|2886953_2888627_-	MCE family protein	NA	NA	NA	NA	NA
WP_003820402.1|2888645_2889965_-	PqiA/YebS family transporter subunit	NA	NA	NA	NA	NA
WP_010931114.1|2889969_2892285_-|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	protease	A0A223W0B1	Agrobacterium_phage	41.9	4.1e-164
WP_010931115.1|2892340_2894509_-	penicillin-binding protein 1C	NA	NA	NA	NA	NA
WP_010931116.1|2894505_2899695_-	alpha-2-macroglobulin family protein	NA	NA	NA	NA	NA
WP_003820400.1|2899784_2900099_-|protease	ATP-dependent Clp protease adapter ClpS	protease	A0A1B1IT64	uncultured_Mediterranean_phage	43.8	1.2e-10
WP_003812875.1|2900326_2900572_+	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	76.6	1.3e-20
WP_003820399.1|2900666_2901185_+	DUF192 domain-containing protein	NA	A0A1B1IUW8	uncultured_Mediterranean_phage	42.2	5.1e-14
WP_010931117.1|2901284_2902490_-	3-oxoadipyl-CoA thiolase	NA	NA	NA	NA	NA
WP_019247560.1|2902605_2904003_-	chloride channel protein	NA	NA	NA	NA	NA
WP_010931119.1|2904119_2904698_-	superoxide dismutase [Fe]	NA	NA	NA	NA	NA
WP_010931120.1|2904770_2906162_-	exodeoxyribonuclease VII large subunit	NA	A0A1V0SD82	Indivirus	32.0	1.4e-29
WP_005012067.1|2906329_2907280_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812889.1|2907560_2908181_+	MotA/TolQ/ExbB proton channel family protein	NA	NA	NA	NA	NA
WP_010931122.1|2908177_2908591_+	biopolymer transporter ExbD	NA	NA	NA	NA	NA
WP_010931123.1|2908587_2909631_+	tetraacyldisaccharide 4'-kinase	NA	NA	NA	NA	NA
WP_003812895.1|2909686_2909875_+	Trm112 family protein	NA	NA	NA	NA	NA
WP_010931124.1|2909884_2910649_+	3-deoxy-manno-octulosonate cytidylyltransferase	NA	NA	NA	NA	NA
WP_010931125.1|2910739_2911396_+	adenylate kinase	NA	NA	NA	NA	NA
WP_010931126.1|2911487_2912246_+	3-hydroxyacyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_010931127.1|2912271_2913873_+	murein biosynthesis integral membrane protein MurJ	NA	NA	NA	NA	NA
WP_010931128.1|2914073_2915078_+	FecR domain-containing protein	NA	NA	NA	NA	NA
WP_003812908.1|2915178_2915442_+	30S ribosomal protein S20	NA	NA	NA	NA	NA
WP_010931129.1|2915559_2916336_-	2-dehydro-3-deoxyglucarate aldolase	NA	NA	NA	NA	NA
WP_005012067.1|2916926_2917877_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931130.1|2920260_2921373_-	Ldh family oxidoreductase	NA	NA	NA	NA	NA
WP_005012808.1|2921429_2922380_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 24
NZ_CP010264	Bordetella pertussis strain I656 chromosome, complete genome	4101762	2944672	2996457	4101762	transposase	Staphylococcus_phage(25.0%)	46	NA	NA
WP_005012067.1|2944672_2945623_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814555.1|2945818_2947291_-	magnesium transporter	NA	NA	NA	NA	NA
WP_003814554.1|2947301_2947712_-	acyl-CoA thioesterase	NA	NA	NA	NA	NA
WP_010929220.1|2947775_2948822_-	YeiH family putative sulfate export transporter	NA	NA	NA	NA	NA
WP_003814552.1|2948928_2949807_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931140.1|2949820_2951017_-	amidohydrolase	NA	NA	NA	NA	NA
WP_023852727.1|2951093_2952770_+	long-chain-fatty-acid--CoA ligase	NA	A0A2H4PQU7	Staphylococcus_phage	28.1	9.3e-33
WP_005012067.1|2952766_2953717_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023852715.1|2953837_2954734_-	inositol monophosphatase	NA	NA	NA	NA	NA
WP_003814547.1|2957011_2959237_+	glycoside hydrolase family 31 protein	NA	NA	NA	NA	NA
WP_003814544.1|2959401_2960490_+	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	36.4	8.7e-32
WP_019247918.1|2960446_2961100_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931144.1|2961147_2961945_+	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930176.1|2962476_2963427_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247277.1|2963501_2964656_+	iron-containing alcohol dehydrogenase	NA	NA	NA	NA	NA
WP_005012067.1|2964712_2965663_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814535.1|2965761_2966067_-	antibiotic biosynthesis monooxygenase	NA	NA	NA	NA	NA
WP_003820797.1|2966095_2966530_-	DUF126 domain-containing protein	NA	NA	NA	NA	NA
WP_010931147.1|2966531_2967776_-	DUF521 domain-containing protein	NA	NA	NA	NA	NA
WP_003820799.1|2967772_2968483_-	FadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_033446288.1|2968497_2969409_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931149.1|2969771_2970176_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247890.1|2970172_2970631_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_019247891.1|2970637_2971546_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_010931150.1|2971542_2972409_+	sugar ABC transporter permease	NA	NA	NA	NA	NA
WP_003814524.1|2972395_2973223_+	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
WP_003820806.1|2973233_2974361_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	32.3	1.2e-23
WP_023852748.1|2975438_2976677_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931152.1|2976718_2977981_+	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_010931153.1|2977987_2978740_+	DNA-binding protein	NA	NA	NA	NA	NA
WP_019248355.1|2978791_2978977_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003820813.1|2979252_2979717_+	redox-sensitive transcriptional activator SoxR	NA	NA	NA	NA	NA
WP_003820814.1|2979748_2980408_+	DNA-3-methyladenine glycosylase I	NA	NA	NA	NA	NA
WP_010931154.1|2980552_2982661_+	AsmA family protein	NA	NA	NA	NA	NA
WP_023852714.1|2982657_2983608_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931155.1|2983711_2984332_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931156.1|2984423_2985176_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_019248356.1|2986310_2987435_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247402.1|2987480_2987849_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|2988090_2989041_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247492.1|2990076_2990619_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|2991004_2991955_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023997028.1|2991951_2992917_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003815281.1|2992986_2993823_+	3-methyl-2-oxobutanoate hydroxymethyltransferase	NA	A0A0P0BXC9	Ostreococcus_lucimarinus_virus	33.3	1.6e-33
WP_010931158.1|2994335_2995445_+	porin	NA	NA	NA	NA	NA
WP_005012067.1|2995506_2996457_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 26
NZ_CP010264	Bordetella pertussis strain I656 chromosome, complete genome	4101762	3376403	3430144	4101762	transposase	Staphylococcus_phage(33.33%)	48	NA	NA
WP_023995489.1|3376403_3377354_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931336.1|3377758_3378403_-	urease accessory protein UreG	NA	NA	NA	NA	NA
WP_019247677.1|3378427_3379012_-	urease accessory protein UreF	NA	NA	NA	NA	NA
WP_014905506.1|3379112_3379730_-	urease accessory protein UreE	NA	NA	NA	NA	NA
WP_010931337.1|3379732_3381448_-	urease subunit alpha	NA	NA	NA	NA	NA
WP_010931338.1|3381444_3381753_-	urease subunit beta	NA	NA	NA	NA	NA
WP_003814828.1|3381769_3382387_-	HupE/UreJ family protein	NA	NA	NA	NA	NA
WP_010931340.1|3382431_3382734_-	urease subunit gamma	NA	NA	NA	NA	NA
WP_003814832.1|3382834_3383689_-	urease accessory protein UreD	NA	NA	NA	NA	NA
WP_124740609.1|3383876_3384101_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929281.1|3384270_3384543_+	MerR family DNA-binding transcriptional regulator	NA	NA	NA	NA	NA
WP_010929282.1|3384960_3385368_-	GFA family protein	NA	NA	NA	NA	NA
WP_010931341.1|3385737_3386532_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010927102.1|3386632_3387868_+	methylaspartate ammonia-lyase	NA	NA	NA	NA	NA
WP_003814852.1|3387936_3388953_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931342.1|3388964_3390341_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_003814856.1|3390337_3391534_+	MFS transporter	NA	NA	NA	NA	NA
WP_003814858.1|3391530_3393069_-	SpoVR family protein	NA	NA	NA	NA	NA
WP_010931343.1|3393065_3394325_-	YeaH/YhbH family protein	NA	NA	NA	NA	NA
WP_005012067.1|3396265_3397216_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931344.1|3397982_3399077_-	CoA transferase	NA	NA	NA	NA	NA
WP_019247312.1|3399069_3400404_-	AMP-binding protein	NA	NA	NA	NA	NA
WP_003808193.1|3400357_3401041_-	TetR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003808195.1|3401066_3402230_-	acyl-CoA dehydrogenase family protein	NA	NA	NA	NA	NA
WP_004566224.1|3402226_3403228_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010931346.1|3403227_3404100_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010931347.1|3404096_3404846_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	27.8	1.9e-09
WP_010931348.1|3404842_3405634_-	ATP-binding cassette domain-containing protein	NA	A0A1M7XV31	Cedratvirus	29.4	1.7e-08
WP_010931349.1|3405630_3406770_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_047122778.1|3407045_3407831_+	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_014486103.1|3407864_3408647_+	crotonase/enoyl-CoA hydratase family protein	NA	NA	NA	NA	NA
WP_010931351.1|3408650_3409040_+	OB-fold domain-containing protein	NA	NA	NA	NA	NA
WP_010931352.1|3410179_3411043_+	MaoC family dehydratase N-terminal domain-containing protein	NA	NA	NA	NA	NA
WP_010931353.1|3411078_3412167_+	NAD(P)H-binding protein	NA	NA	NA	NA	NA
WP_010931070.1|3412163_3413114_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247959.1|3413467_3416446_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003818344.1|3417372_3418251_+	fatty acid desaturase	NA	NA	NA	NA	NA
WP_005013747.1|3420199_3421150_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931354.1|3421146_3421614_-	ribonuclease HI	NA	J9Q745	Salmonella_phage	50.7	5.6e-36
WP_010931355.1|3421656_3422427_-	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_010927090.1|3422447_3423248_+	hydroxyacylglutathione hydrolase	NA	NA	NA	NA	NA
WP_010931356.1|3423258_3424668_+	transglycosylase SLT domain-containing protein	NA	NA	NA	NA	NA
WP_003814739.1|3424762_3425548_+	enoyl-ACP reductase FabI	NA	NA	NA	NA	NA
WP_010931561.1|3425787_3426804_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003814742.1|3426911_3427304_-	OsmC family protein	NA	NA	NA	NA	NA
WP_010931357.1|3427441_3428122_+	tellurite resistance TerB family protein	NA	NA	NA	NA	NA
WP_023994844.1|3428126_3429098_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930179.1|3429193_3430144_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 27
NZ_CP010264	Bordetella pertussis strain I656 chromosome, complete genome	4101762	3436299	3495599	4101762	tRNA,transposase	Acinetobacter_phage(27.27%)	48	NA	NA
WP_003820957.1|3436299_3438063_+|tRNA	glutamine--tRNA ligase/YqeY domain fusion protein	tRNA	A0A222YZ70	Escherichia_phage	50.0	5.0e-162
WP_010931362.1|3438174_3439053_+	septum site-determining protein MinC	NA	NA	NA	NA	NA
WP_003814250.1|3439165_3439981_+	septum site-determining protein MinD	NA	NA	NA	NA	NA
WP_003814252.1|3439984_3440236_+	cell division topological specificity factor MinE	NA	NA	NA	NA	NA
WP_010929632.1|3440320_3441337_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003814254.1|3441667_3441889_-	glycine zipper 2TM domain-containing protein	NA	NA	NA	NA	NA
WP_019247693.1|3444249_3445167_-	DMT family transporter	NA	NA	NA	NA	NA
WP_019247692.1|3445664_3446873_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931365.1|3446952_3448524_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003814275.1|3448641_3449577_-	glycosyltransferase family 2 protein	NA	NA	NA	NA	NA
WP_003814277.1|3449765_3450710_+	LysR family transcriptional regulator	NA	A0A2P0ZL89	Lactobacillus_phage	23.2	8.4e-07
WP_003814283.1|3451277_3456995_+	excinuclease ABC subunit UvrA	NA	A0A1B1IVR3	uncultured_Mediterranean_phage	39.5	1.0e-195
WP_010931367.1|3457000_3458128_+	aminodeoxychorismate synthase component I	NA	S4VT78	Pandoravirus	37.8	3.8e-38
WP_003814287.1|3458183_3458810_+	aminotransferase class IV	NA	NA	NA	NA	NA
WP_010931363.1|3459081_3460098_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010927020.1|3460193_3460904_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010931368.1|3460900_3461890_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931369.1|3461985_3463617_+	AMP-binding protein	NA	NA	NA	NA	NA
WP_010931370.1|3463619_3464357_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247745.1|3464512_3465385_-|tRNA	tRNA threonylcarbamoyladenosine dehydratase	tRNA	NA	NA	NA	NA
WP_003814298.1|3465653_3466874_+	MFS transporter	NA	NA	NA	NA	NA
WP_003814300.1|3466870_3467530_+	gamma-glutamylcyclotransferase	NA	NA	NA	NA	NA
WP_003814302.1|3467601_3468234_+	pyridoxamine 5'-phosphate oxidase	NA	NA	NA	NA	NA
WP_010931372.1|3468263_3468782_+	flavin reductase family protein	NA	NA	NA	NA	NA
WP_010931373.1|3468792_3469902_+	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_003814312.1|3469948_3470803_+	formyltetrahydrofolate deformylase	NA	NA	NA	NA	NA
WP_010931374.1|3470804_3471707_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|3472929_3473880_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023997720.1|3475636_3476626_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247413.1|3476622_3476781_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931375.1|3476801_3477590_-	indole-3-glycerol phosphate synthase TrpC	NA	A0A0P0IR83	Acinetobacter_phage	53.0	5.1e-66
WP_003817833.1|3477586_3478618_-	anthranilate phosphoribosyltransferase	NA	A0A0N7IRD9	Acinetobacter_phage	42.7	7.4e-73
WP_003815390.1|3478636_3479200_-	aminodeoxychorismate/anthranilate synthase component II	NA	A0A0P0IKJ1	Acinetobacter_phage	62.1	1.1e-65
WP_010931376.1|3479255_3480776_-	anthranilate synthase component I	NA	S4VT78	Pandoravirus	32.1	9.0e-43
WP_010931377.1|3481039_3481744_-	phosphoglycolate phosphatase	NA	NA	NA	NA	NA
WP_003815384.1|3481751_3482489_-	ribulose-phosphate 3-epimerase	NA	NA	NA	NA	NA
WP_003815381.1|3482594_3482969_+	Co2+/Mg2+ efflux protein ApaG	NA	NA	NA	NA	NA
WP_003815379.1|3483011_3484301_+	murein transglycosylase A	NA	NA	NA	NA	NA
WP_010931378.1|3484297_3485467_+	UbiH/UbiF family hydroxylase	NA	NA	NA	NA	NA
WP_010931379.1|3485463_3486303_+	thiol:disulfide interchange protein DsbC	NA	NA	NA	NA	NA
WP_010931380.1|3486362_3487298_+	D-2-hydroxyacid dehydrogenase family protein	NA	A0A1J0F959	Only_Syngen_Nebraska_virus	27.7	6.4e-15
WP_005012067.1|3487310_3488261_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931381.1|3488359_3489322_-|tRNA	tRNA 2-thiocytidine(32) synthetase TtcA	tRNA	A0A0U2S5Z2	Escherichia_phage	64.5	4.6e-93
WP_003817821.1|3489353_3489713_-	dihydroneopterin aldolase	NA	NA	NA	NA	NA
WP_010931382.1|3489837_3490740_+	NAD(P)/FAD-dependent oxidoreductase	NA	G3MA85	Bacillus_virus	24.0	1.9e-08
WP_010931383.1|3490741_3492514_-	M61 family metallopeptidase	NA	NA	NA	NA	NA
WP_003815367.1|3492548_3493325_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_023852617.1|3494648_3495599_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 28
NZ_CP010264	Bordetella pertussis strain I656 chromosome, complete genome	4101762	3510537	3568610	4101762	tRNA,transposase	Planktothrix_phage(12.5%)	47	NA	NA
WP_005012808.1|3510537_3511488_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931392.1|3511616_3512750_-	M20 family metallopeptidase	NA	NA	NA	NA	NA
WP_010931393.1|3512793_3513699_-	hydrolase	NA	NA	NA	NA	NA
WP_023852622.1|3513701_3515402_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	32.7	1.0e-15
WP_010931394.1|3515398_3516319_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_003817805.1|3516326_3517304_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931395.1|3517362_3518397_-	succinylglutamate desuccinylase/aspartoacylase family protein	NA	NA	NA	NA	NA
WP_003815317.1|3520371_3520608_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023995266.1|3520734_3521598_-	NAD(P)H-hydrate dehydratase	NA	NA	NA	NA	NA
WP_003815315.1|3521686_3522508_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003815313.1|3522587_3523325_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010931397.1|3523321_3524314_-	nitronate monooxygenase	NA	NA	NA	NA	NA
WP_003817794.1|3524427_3525090_+	TetR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931399.1|3525134_3526283_+	acyl-CoA dehydrogenase family protein	NA	NA	NA	NA	NA
WP_010931400.1|3528606_3529557_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014486105.1|3529897_3530848_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|3530946_3531897_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_029443756.1|3532193_3532691_+	cupredoxin family protein	NA	NA	NA	NA	NA
WP_010931403.1|3532733_3534509_+	copper resistance system multicopper oxidase	NA	NA	NA	NA	NA
WP_010931404.1|3534516_3535383_+	copper resistance protein B	NA	NA	NA	NA	NA
WP_019249391.1|3535389_3536124_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010931406.1|3537293_3538088_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003815296.1|3538377_3538968_+	cysteine dioxygenase	NA	NA	NA	NA	NA
WP_010931407.1|3539001_3540330_-	amidase	NA	NA	NA	NA	NA
WP_010931408.1|3540404_3541550_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_014905478.1|3541661_3542660_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_033446233.1|3542622_3543057_+	carbon monoxide dehydrogenase	NA	NA	NA	NA	NA
WP_010929974.1|3544573_3545458_+	DMT family transporter	NA	NA	NA	NA	NA
WP_010929973.1|3545454_3546660_-	cardiolipin synthase ClsB	NA	NA	NA	NA	NA
WP_010929972.1|3546656_3547517_-	endonuclease/exonuclease/phosphatase family protein	NA	NA	NA	NA	NA
WP_003807038.1|3547629_3549420_-|tRNA	aspartate--tRNA ligase	tRNA	A0A1V0SAC0	Catovirus	25.5	6.5e-08
WP_003807035.1|3549460_3550126_-	DUF502 domain-containing protein	NA	A0A2I7S9X1	Vibrio_phage	28.4	6.7e-11
WP_010929971.1|3550126_3550435_-	FmdB family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929970.1|3550600_3551887_-	putative Na+/H+ antiporter	NA	NA	NA	NA	NA
WP_010929969.1|3553320_3554271_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929968.1|3556222_3557437_-	formate-dependent phosphoribosylglycinamide formyltransferase	NA	NA	NA	NA	NA
WP_003815171.1|3557542_3558532_+	KpsF/GutQ family sugar-phosphate isomerase	NA	A0A2P0VNK5	Tetraselmis_virus	37.7	4.3e-38
WP_003815172.1|3558528_3559137_+	HAD-IIIA family hydrolase	NA	E3T535	Cafeteria_roenbergensis_virus	26.1	5.2e-10
WP_010929967.1|3559149_3559779_+	LPS export ABC transporter periplasmic protein LptC	NA	NA	NA	NA	NA
WP_003815175.1|3559775_3560396_+	lipopolysaccharide transport periplasmic protein LptA	NA	NA	NA	NA	NA
WP_003815177.1|3560427_3561219_+	LPS export ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	27.4	9.5e-20
WP_010929966.1|3562070_3562526_+	PTS sugar transporter subunit IIA	NA	NA	NA	NA	NA
WP_010929965.1|3562544_3563471_+	HPr kinase/phosphorylase	NA	NA	NA	NA	NA
WP_010929964.1|3563524_3564811_-	cytochrome c	NA	NA	NA	NA	NA
WP_003815183.1|3565741_3566614_+	RNase adapter RapZ	NA	A0A1P8D5W0	Corynebacterium_phage	34.5	2.4e-08
WP_010929963.1|3566610_3567561_+	septal ring lytic transglycosylase RlpA family protein	NA	F5B3X9	Synechococcus_phage	47.2	6.9e-17
WP_005012067.1|3567659_3568610_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 30
NZ_CP010264	Bordetella pertussis strain I656 chromosome, complete genome	4101762	4023933	4077365	4101762	transposase	Planktothrix_phage(40.0%)	45	NA	NA
WP_010931661.1|4023933_4024884_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931662.1|4025053_4026280_+	bifunctional glutamate N-acetyltransferase/amino-acid acetyltransferase ArgJ	NA	NA	NA	NA	NA
WP_010931663.1|4026479_4027346_+	ATP-binding protein	NA	NA	NA	NA	NA
WP_003815027.1|4027338_4028301_+	Nudix family hydrolase	NA	A0A221LFJ1	Barns_Ness_breadcrumb_sponge_sobemo-like_virus	53.4	1.9e-06
WP_010927663.1|4028401_4029352_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|4029450_4030401_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929577.1|4030499_4031450_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994937.1|4031446_4032940_-	efflux transporter outer membrane subunit	NA	NA	NA	NA	NA
WP_003815032.1|4032936_4036044_-	multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_010931665.1|4036040_4039109_-	MdtB/MuxB family multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_010931666.1|4039105_4040356_-	MdtA/MuxA family multidrug efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
WP_003815038.1|4040536_4041298_-	cell division protein ZapD	NA	NA	NA	NA	NA
WP_019247320.1|4041330_4041981_-	dephospho-CoA kinase	NA	NA	NA	NA	NA
WP_003820519.1|4041983_4042823_-	prepilin peptidase	NA	NA	NA	NA	NA
WP_003815047.1|4043063_4043807_+	copper resistance protein NlpE N-terminal domain-containing protein	NA	NA	NA	NA	NA
WP_003815049.1|4043889_4044237_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003815051.1|4044334_4045177_-	pantoate--beta-alanine ligase	NA	NA	NA	NA	NA
WP_003815053.1|4045221_4046109_-	segregation/condensation protein A	NA	NA	NA	NA	NA
WP_003815055.1|4046135_4046324_-	DUF3460 family protein	NA	NA	NA	NA	NA
WP_010931669.1|4046421_4047879_+	DHA2 family efflux MFS transporter permease subunit	NA	NA	NA	NA	NA
WP_010931670.1|4047865_4049392_+	glycerol kinase GlpK	NA	NA	NA	NA	NA
WP_003815061.1|4049410_4049878_-	CopD family protein	NA	NA	NA	NA	NA
WP_010931671.1|4049877_4050900_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_169507388.1|4051020_4051740_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	39.9	4.7e-34
WP_003815066.1|4051815_4052916_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003815068.1|4052917_4054108_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003815070.1|4054227_4055244_-	amino acid ABC transporter substrate-binding protein	NA	A0A1B1IT51	uncultured_Mediterranean_phage	42.1	1.0e-71
WP_003815073.1|4055562_4056234_+	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	38.2	9.5e-29
WP_010927126.1|4056230_4057139_+	FtsX-like permease family protein	NA	NA	NA	NA	NA
WP_010931672.1|4057350_4057998_+	chemoreceptor glutamine deamidase CheD	NA	NA	NA	NA	NA
WP_010931673.1|4061849_4062926_+	A/G-specific adenine glycosylase	NA	NA	NA	NA	NA
WP_003815084.1|4062936_4063746_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003815086.1|4063835_4064609_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_010930363.1|4064791_4065742_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_077274100.1|4065630_4066653_+	CoA transferase	NA	NA	NA	NA	NA
WP_010931674.1|4066642_4067797_+	CoA transferase	NA	NA	NA	NA	NA
WP_010931675.1|4067836_4069249_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_019247370.1|4069373_4070240_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931677.1|4070241_4071066_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_023853488.1|4071062_4071824_+	nitroreductase	NA	M1I6Q5	Acanthocystis_turfacea_Chlorella_virus	31.0	2.0e-19
WP_003808010.1|4071904_4072591_-	TetR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931679.1|4072764_4073772_+	hydroxymethylglutaryl-CoA lyase	NA	NA	NA	NA	NA
WP_003819309.1|4073768_4074548_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010931680.1|4074605_4075868_+	CoA transferase	NA	NA	NA	NA	NA
WP_077598852.1|4076414_4077365_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
