The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP010263	Bordetella pertussis strain I646 chromosome, complete genome	4105348	27282	70036	4105348	transposase,tRNA	Synechococcus_phage(50.0%)	41	NA	NA
WP_010930363.1|27282_28233_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023995007.1|28314_28650_-	CoA transferase	NA	NA	NA	NA	NA
WP_010929578.1|28674_29109_-	OB-fold domain-containing protein	NA	NA	NA	NA	NA
WP_019247164.1|29141_30359_-	thiolase family protein	NA	NA	NA	NA	NA
WP_010929580.1|30364_30862_-	MaoC family dehydratase	NA	NA	NA	NA	NA
WP_019247165.1|31069_32005_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929582.1|32214_33006_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010929583.1|33048_34470_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_010929584.1|34625_35576_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814398.1|35572_36763_-	MFS transporter	NA	NA	NA	NA	NA
WP_010929585.1|37012_37924_+|tRNA	glycine--tRNA ligase subunit alpha	tRNA	NA	NA	NA	NA
WP_010929586.1|37925_40064_+|tRNA	glycine--tRNA ligase subunit beta	tRNA	NA	NA	NA	NA
WP_003814404.1|40060_40600_+	D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase	NA	NA	NA	NA	NA
WP_003814405.1|40603_41332_+	1-acyl-sn-glycerol-3-phosphate acyltransferase	NA	NA	NA	NA	NA
WP_010929587.1|41318_42212_+	M48 family metallopeptidase	NA	NA	NA	NA	NA
WP_019247766.1|42282_42678_+	lactoylglutathione lyase	NA	NA	NA	NA	NA
WP_003814412.1|42687_43218_+	peptide deformylase	NA	E3SLL2	Synechococcus_phage	35.4	3.7e-12
WP_010930208.1|43663_44614_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929589.1|45200_45749_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815265.1|45720_45957_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003815255.1|46084_46978_+	AEC family transporter	NA	NA	NA	NA	NA
WP_010929590.1|48147_49395_+	homoserine O-acetyltransferase	NA	NA	NA	NA	NA
WP_003817748.1|49391_50006_+	methionine biosynthesis protein MetW	NA	NA	NA	NA	NA
WP_010929591.1|50141_51092_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_029443813.1|51134_52391_+	muropeptide transporter	NA	NA	NA	NA	NA
WP_010929592.1|53622_54357_-	aspartate/glutamate racemase family protein	NA	NA	NA	NA	NA
WP_019247224.1|54362_54953_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.6	3.2e-20
WP_003817737.1|54977_55667_-	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_023852650.1|55663_56425_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010929594.1|56504_57404_-	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_005012808.1|57497_58448_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929595.1|59248_60475_-	type II toxin-antitoxin system HipA family toxin	NA	NA	NA	NA	NA
WP_047122776.1|60474_60888_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010929597.1|61077_62019_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019248755.1|62442_63417_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929599.1|63473_64055_-	DJ-1/PfpI family protein	NA	NA	NA	NA	NA
WP_010929600.1|64067_64370_-	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA	NA
WP_029443770.1|64488_65547_-	2Fe-2S iron-sulfur cluster binding domain-containing protein	NA	NA	NA	NA	NA
WP_019247832.1|65581_66853_-	TRAP transporter large permease	NA	NA	NA	NA	NA
WP_010929603.1|67482_68664_-	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_005012808.1|69085_70036_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 2
NZ_CP010263	Bordetella pertussis strain I646 chromosome, complete genome	4105348	77634	136108	4105348	transposase,tRNA	Planktothrix_phage(22.22%)	54	NA	NA
WP_005012067.1|77634_78585_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_041166334.1|78659_79604_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929608.1|79600_81475_-	O-antigen biosynthesis protein WlbL	NA	A0A2P1ELS8	Moumouvirus	26.9	2.0e-23
WP_003807102.1|82822_83527_-	O-antigen biosynthesis protein WlbI	NA	NA	NA	NA	NA
WP_010929609.1|83523_84696_-	O-antigen biosynthesis protein WlbH	NA	NA	NA	NA	NA
WP_010929610.1|84891_85485_-	O-antigen biosynthesis protein WlbG	NA	NA	NA	NA	NA
WP_010929611.1|85481_86714_-	O-antigen biosynthesis protein WlbF	NA	NA	NA	NA	NA
WP_010929612.1|86731_87991_-	O-antigen biosynthesis protein WlbE	NA	NA	NA	NA	NA
WP_010929613.1|88014_89103_-	O-antigen biosynthesis protein WlbD	NA	A0A0N9R0B2	Chrysochromulina_ericina_virus	36.3	4.8e-46
WP_010929614.1|89110_90211_-	O-antigen biosynthesis protein WlbC	NA	A0A2K9L0G1	Tupanvirus	29.7	3.3e-31
WP_003807114.1|90214_90790_-	O-antigen biosynthesis protein WlbB	NA	NA	NA	NA	NA
WP_003807115.1|90793_91846_-	O-antigen biosynthesis protein WlbA	NA	NA	NA	NA	NA
WP_010929615.1|91976_92984_+	lipopolysaccharide heptosyltransferase I	NA	NA	NA	NA	NA
WP_010929616.1|92985_94272_+	3-deoxy-D-manno-octulosonic acid transferase	NA	NA	NA	NA	NA
WP_003807124.1|94288_94444_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929617.1|94468_95272_-	type III pantothenate kinase	NA	NA	NA	NA	NA
WP_010929618.1|95268_96135_-	biotin--[acetyl-CoA-carboxylase] ligase	NA	NA	NA	NA	NA
WP_010929619.1|96209_97340_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_003807131.1|97339_98179_+	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	32.4	9.1e-21
WP_010929620.1|99111_99714_+	membrane integrity-associated transporter subunit PqiC	NA	NA	NA	NA	NA
WP_010929621.1|99743_100397_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003807138.1|100529_101786_+	D-alanyl-D-alanine carboxypeptidase	NA	B6DZZ7	Stx2-converting_phage	40.5	6.2e-66
WP_010929622.1|101833_102733_+	D-amino acid aminotransferase	NA	NA	NA	NA	NA
WP_003818417.1|102808_103084_+	YbeD family protein	NA	NA	NA	NA	NA
WP_010929623.1|103091_103754_+	lipoyl(octanoyl) transferase LipB	NA	NA	NA	NA	NA
WP_003807146.1|103815_104817_+	lipoyl synthase	NA	NA	NA	NA	NA
WP_003807148.1|104831_105380_-	dTDP-4-dehydrorhamnose 3,5-epimerase	NA	A0A291LA62	Escherichia_phage	53.4	3.7e-47
WP_010929624.1|105437_106334_-	dTDP-4-dehydrorhamnose reductase	NA	NA	NA	NA	NA
WP_010929625.1|106330_107392_-	dTDP-glucose 4,6-dehydratase	NA	A0A1D7XFE8	Escherichia_phage	44.8	1.6e-78
WP_010929626.1|107427_108378_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929627.1|109277_110471_+	cystathionine beta-lyase	NA	NA	NA	NA	NA
WP_010929628.1|110552_111182_-	thiol:disulfide interchange protein DsbA/DsbL	NA	NA	NA	NA	NA
WP_010927242.1|111243_111927_-	SPOR domain-containing protein	NA	NA	NA	NA	NA
WP_023853376.1|111936_113619_-|tRNA	arginine--tRNA ligase	tRNA	NA	NA	NA	NA
WP_003815933.1|113906_114254_+	DUF1840 domain-containing protein	NA	NA	NA	NA	NA
WP_003815930.1|114344_114662_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931363.1|114944_115961_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003815929.1|116036_116837_-	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
WP_003815927.1|116833_117709_-	sugar ABC transporter permease	NA	NA	NA	NA	NA
WP_010929633.1|117719_119012_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929634.1|119054_120095_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.7	6.0e-22
WP_010929635.1|120200_121022_-	phosphodiesterase	NA	NA	NA	NA	NA
WP_005012067.1|121122_122073_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014905488.1|122171_123077_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	31.7	9.8e-21
WP_003815918.1|123073_123907_-	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_010929637.1|124743_125754_-	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_019247800.1|125750_126140_-	substrate-binding domain-containing protein	NA	NA	NA	NA	NA
WP_010929638.1|127033_128287_+	amidase	NA	NA	NA	NA	NA
WP_010929639.1|128377_130078_-	2-isopropylmalate synthase	NA	NA	NA	NA	NA
WP_010929640.1|130504_131152_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023853393.1|131150_132590_+	RNA polymerase factor sigma-54	NA	NA	NA	NA	NA
WP_003815905.1|132682_132985_+	bacterioferritin-associated ferredoxin	NA	NA	NA	NA	NA
WP_010929512.1|133012_133891_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|135157_136108_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 3
NZ_CP010263	Bordetella pertussis strain I646 chromosome, complete genome	4105348	164893	225404	4105348	protease,transposase,tRNA	Diachasmimorpha_longicaudata_entomopoxvirus(11.11%)	51	NA	NA
WP_005015810.1|164893_165844_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929659.1|167287_168190_-	YgcG family protein	NA	NA	NA	NA	NA
WP_003815889.1|168167_168797_-	LemA family protein	NA	NA	NA	NA	NA
WP_010929660.1|169079_170510_+	DEAD/DEAH box helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	29.8	5.8e-44
WP_010929661.1|170543_171173_+	LysE family transporter	NA	NA	NA	NA	NA
WP_003815895.1|171221_172829_+	peptide chain release factor 3	NA	A0A2K9L6L3	Tupanvirus	37.8	9.3e-14
WP_010929663.1|172853_173537_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815898.1|173618_174095_-	bacterioferritin	NA	NA	NA	NA	NA
WP_010929591.1|174301_175252_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929664.1|176367_176895_+	META domain-containing protein	NA	NA	NA	NA	NA
WP_010929665.1|176986_177802_+	META and DUF4377 domain-containing protein	NA	NA	NA	NA	NA
WP_003808370.1|177862_178597_+	sulfurtransferase	NA	NA	NA	NA	NA
WP_010929666.1|178634_180713_-|tRNA	methionine--tRNA ligase	tRNA	A0A1V0SHR2	Klosneuvirus	23.6	1.5e-27
WP_003808374.1|180962_181235_-	hypothetical protein	NA	NA	NA	NA	NA
WP_033446322.1|181336_182422_+	iron-sulfur cluster carrier protein ApbC	NA	NA	NA	NA	NA
WP_010929668.1|182425_184330_+	BamA/TamA family outer membrane protein	NA	NA	NA	NA	NA
WP_014486044.1|184326_188001_+	translocation/assembly module TamB domain-containing protein	NA	NA	NA	NA	NA
WP_010929670.1|188061_188625_+	dCTP deaminase	NA	S5VM63	Pseudomonas_phage	75.3	2.6e-72
WP_003808385.1|188632_189055_-	VOC family protein	NA	NA	NA	NA	NA
WP_010929671.1|189082_189502_-	VOC family protein	NA	NA	NA	NA	NA
WP_076879599.1|189530_190004_-	GNAT family N-acetyltransferase	NA	Q9AZG4	Lactococcus_phage	31.1	2.2e-11
WP_003808391.1|190103_190601_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003808393.1|190755_193026_+	arginine/lysine/ornithine decarboxylase	NA	NA	NA	NA	NA
WP_010929672.1|193074_194307_+	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010929591.1|194405_195356_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929673.1|195458_196094_+	superoxide dismutase	NA	Q56AR7	Bacillus_thuringiensis_phage	73.8	2.8e-83
WP_019248671.1|196090_196984_+	ZIP family metal transporter	NA	NA	NA	NA	NA
WP_010929675.1|197378_198479_+	glycine cleavage system aminomethyltransferase GcvT	NA	NA	NA	NA	NA
WP_010929676.1|198560_198935_+	glycine cleavage system protein GcvH	NA	NA	NA	NA	NA
WP_010929677.1|198994_201859_+	aminomethyl-transferring glycine dehydrogenase	NA	E3SN07	Prochlorococcus_phage	51.4	1.2e-261
WP_010929678.1|202003_202744_-	FadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929679.1|202813_204025_+	CoA transferase	NA	NA	NA	NA	NA
WP_010929680.1|204053_205022_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931070.1|205635_206586_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929699.1|206742_207066_+	phosphate starvation-inducible protein	NA	NA	NA	NA	NA
WP_023853200.1|207170_208211_-	cyclase family protein	NA	NA	NA	NA	NA
WP_010929697.1|208216_208996_-	3-oxoadipate enol-lactonase	NA	NA	NA	NA	NA
WP_003807672.1|209041_209338_-	YciI family protein	NA	NA	NA	NA	NA
WP_003807674.1|209363_209639_-	muconolactone Delta-isomerase	NA	NA	NA	NA	NA
WP_003819086.1|209695_210340_-	CoA transferase subunit B	NA	NA	NA	NA	NA
WP_010929696.1|210339_211026_-	3-oxoacid CoA-transferase subunit A	NA	NA	NA	NA	NA
WP_010929695.1|211155_212007_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929694.1|212057_212783_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010929693.1|212814_214164_-	short-chain fatty acid transporter	NA	NA	NA	NA	NA
WP_010929692.1|214275_215208_-	3-hydroxyacyl-CoA dehydrogenase family protein	NA	NA	NA	NA	NA
WP_033455792.1|215665_218461_-|protease	serine protease autotransporter SphB1	protease	NA	NA	NA	NA
WP_010929690.1|219054_221997_-	phosphoenolpyruvate carboxylase	NA	NA	NA	NA	NA
WP_010929689.1|222068_222788_+	7-cyano-7-deazaguanine synthase QueC	NA	A0A0A0RPC6	Escherichia_phage	43.9	8.0e-50
WP_010929688.1|222826_223375_-	N-acetyltransferase	NA	A0A2H4J136	uncultured_Caudovirales_phage	41.7	1.2e-21
WP_010929687.1|223529_224429_+	virginiamycin B lyase	NA	NA	NA	NA	NA
WP_005012808.1|224453_225404_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 4
NZ_CP010263	Bordetella pertussis strain I646 chromosome, complete genome	4105348	233336	287973	4105348	protease,transposase,tRNA	Bacillus_phage(25.0%)	49	NA	NA
WP_005012067.1|233336_234287_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010927663.1|234373_235324_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|235320_236271_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930742.1|236369_237320_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929700.1|237418_238216_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_003814363.1|239165_239576_+	carboxymuconolactone decarboxylase family protein	NA	NA	NA	NA	NA
WP_003814358.1|240597_241341_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814356.1|241384_242428_-	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003814355.1|242598_244701_+	TRAP transporter large permease subunit	NA	NA	NA	NA	NA
WP_003814351.1|246111_247068_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929701.1|247086_247578_-	2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase	NA	NA	NA	NA	NA
WP_010929702.1|247574_248930_-	polynucleotide adenylyltransferase PcnB	NA	A0A1B1IVF3	uncultured_Mediterranean_phage	36.8	3.4e-25
WP_010929703.1|248930_249629_-	HAD-IB family hydrolase	NA	NA	NA	NA	NA
WP_010929704.1|249625_250327_-	DnaA regulatory inactivator Hda	NA	NA	NA	NA	NA
WP_003814339.1|250579_251629_+	phosphoribosylformylglycinamidine cyclo-ligase	NA	Q58MH8	Prochlorococcus_phage	43.6	5.6e-68
WP_003814337.1|251734_252676_-|tRNA	tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA	tRNA	NA	NA	NA	NA
WP_010929705.1|252672_254562_-	DNA mismatch repair endonuclease MutL	NA	A0A1B2LRQ5	Wolbachia_phage	32.8	3.3e-79
WP_003814332.1|254648_255287_+	VTT domain-containing protein	NA	NA	NA	NA	NA
WP_019247543.1|255429_256815_-	N-acetylmuramoyl-L-alanine amidase	NA	A0A2H4JCM7	uncultured_Caudovirales_phage	30.3	4.5e-17
WP_010929706.1|256745_257282_-|tRNA	bifunctional alanine racemase/tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE	tRNA	NA	NA	NA	NA
WP_010929707.1|257433_258825_+	class II fumarate hydratase	NA	NA	NA	NA	NA
WP_010929708.1|258841_259822_-	AEC family transporter	NA	NA	NA	NA	NA
WP_003814324.1|259957_260941_+	tripartite tricarboxylate transporter substrate binding protein BugE	NA	NA	NA	NA	NA
WP_010929709.1|261005_261905_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814321.1|262011_263766_+	gamma-glutamyltransferase	NA	NA	NA	NA	NA
WP_010929710.1|263773_264898_-	CoA transferase	NA	NA	NA	NA	NA
WP_010929711.1|264911_265892_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930048.1|266622_267573_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929712.1|268132_268678_+	GbsR/MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929713.1|268761_270381_+	cytochrome d ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
WP_004567834.1|270396_271551_+	cytochrome d ubiquinol oxidase subunit II	NA	NA	NA	NA	NA
WP_003817696.1|271564_271690_+	cytochrome bd-I oxidase subunit CydX	NA	NA	NA	NA	NA
WP_010929714.1|271686_273438_+	thiol reductant ABC exporter subunit CydD	NA	W8CYL7	Bacillus_phage	23.8	3.4e-09
WP_010929715.1|273434_275114_+	thiol reductant ABC exporter subunit CydC	NA	W8CYL7	Bacillus_phage	27.6	3.6e-16
WP_010929716.1|275176_275725_+	adenine phosphoribosyltransferase	NA	A0A1V0SKE5	Klosneuvirus	43.1	1.3e-28
WP_010929717.1|276867_277146_+	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|278189_279140_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_173651708.1|279157_279304_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929718.1|279417_279579_+	DUF4224 domain-containing protein	NA	NA	NA	NA	NA
WP_010929719.1|279586_279727_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815821.1|280245_280695_-|protease	ClpXP protease specificity-enhancing factor	protease	NA	NA	NA	NA
WP_003815819.1|280704_281316_-	glutathione S-transferase N-terminal domain-containing protein	NA	NA	NA	NA	NA
WP_019247426.1|281474_282329_-	cytochrome c1	NA	NA	NA	NA	NA
WP_003815816.1|282348_283731_-	cytochrome bc complex cytochrome b subunit	NA	NA	NA	NA	NA
WP_003815815.1|283795_284437_-	ubiquinol-cytochrome c reductase iron-sulfur subunit	NA	NA	NA	NA	NA
WP_010929721.1|284576_285035_+	large conductance mechanosensitive channel protein MscL	NA	NA	NA	NA	NA
WP_010927226.1|285059_285836_-	Nif3-like dinuclear metal center hexameric protein	NA	NA	NA	NA	NA
WP_014906092.1|285889_287026_+	trypsin-like peptidase domain-containing protein	NA	W5SAB9	Pithovirus	31.2	1.2e-07
WP_005015810.1|287022_287973_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 5
NZ_CP010263	Bordetella pertussis strain I646 chromosome, complete genome	4105348	391906	449415	4105348	transposase	Orpheovirus(14.29%)	50	NA	NA
WP_005012067.1|391906_392857_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010927231.1|392993_393911_+	reductase	NA	NA	NA	NA	NA
WP_003815842.1|393907_394156_+	glutaredoxin family protein	NA	NA	NA	NA	NA
WP_003815840.1|394152_395358_+	CoA transferase	NA	NA	NA	NA	NA
WP_014486045.1|395430_396426_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_014486046.1|396448_397669_-	CoA transferase	NA	NA	NA	NA	NA
WP_014486047.1|397665_398310_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019248476.1|400040_400850_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_014486048.1|401154_402108_+	thioredoxin-disulfide reductase	NA	A0A2I2L5E1	Orpheovirus	42.5	5.6e-59
WP_014486049.1|402206_403190_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014486050.1|403116_403818_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_014486051.1|403866_404637_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_019247259.1|404633_405812_-	CoA transferase	NA	NA	NA	NA	NA
WP_014486052.1|405979_407686_-	thiamine pyrophosphate-requiring protein	NA	NA	NA	NA	NA
WP_014486053.1|407682_408579_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_014486054.1|408619_410209_-	rhodanese homology domain-containing protein	NA	NA	NA	NA	NA
WP_003807867.1|410258_411251_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003807865.1|411319_411919_-	hypothetical protein	NA	NA	NA	NA	NA
WP_014486055.1|412379_413360_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929577.1|413435_414386_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_047122777.1|414474_415389_+	DMT family transporter	NA	NA	NA	NA	NA
WP_010929782.1|415385_416045_+	LysE family translocator	NA	NA	NA	NA	NA
WP_003814709.1|416134_417058_+	alpha/beta fold hydrolase	NA	A0A1C9C5K3	Heterosigma_akashiwo_virus	27.2	4.8e-07
WP_010929783.1|417063_417519_-	multidrug/biocide efflux PACE transporter	NA	NA	NA	NA	NA
WP_010929784.1|417515_418619_-	ChbG/HpnK family deacetylase	NA	NA	NA	NA	NA
WP_157734656.1|418577_418847_+	GtrA family protein	NA	NA	NA	NA	NA
WP_010927086.1|418806_420426_-	glycosyltransferase family 39 protein	NA	NA	NA	NA	NA
WP_003814720.1|420422_421481_-	glycosyltransferase family 2 protein	NA	I1TED8	Salmonella_phage	40.5	2.8e-59
WP_033446199.1|421610_422105_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_022997984.1|422197_423175_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929785.1|423370_424576_+	sodium/glutamate symporter	NA	NA	NA	NA	NA
WP_010929786.1|424572_426084_+	TAXI family TRAP transporter solute-binding subunit	NA	NA	NA	NA	NA
WP_003814726.1|426099_427413_-	short-chain fatty acid transporter	NA	NA	NA	NA	NA
WP_003814728.1|427603_427783_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003814730.1|428192_428927_-	DNA polymerase III subunit epsilon	NA	A0A1X9SH08	Bradyrhizobium_phage	43.8	1.4e-41
WP_010929577.1|431371_432322_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247421.1|432453_432852_-	GTP-binding protein	NA	E4ZFJ7	Streptococcus_phage	44.3	9.0e-19
WP_003814701.1|433262_433733_-	universal stress protein	NA	NA	NA	NA	NA
WP_003820700.1|433821_434166_-	TIGR01244 family phosphatase	NA	NA	NA	NA	NA
WP_010929788.1|434265_435666_-	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
WP_010929789.1|437454_437973_-	MgtC/SapB family protein	NA	G3MA03	Bacillus_virus	38.9	2.1e-12
WP_003814694.1|438083_438839_+	TerC family protein	NA	A0A0R6PEZ3	Moraxella_phage	40.8	2.9e-42
WP_003814691.1|439034_440267_+	CoA transferase	NA	NA	NA	NA	NA
WP_010929791.1|440259_441045_+	crotonase/enoyl-CoA hydratase family protein	NA	NA	NA	NA	NA
WP_003814685.1|441111_442083_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003814681.1|442093_443071_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247419.1|443196_444369_+	acyl-CoA dehydrogenase family protein	NA	NA	NA	NA	NA
WP_010929793.1|444395_445424_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_003814674.1|445489_446683_+	acetyl-CoA C-acyltransferase	NA	NA	NA	NA	NA
WP_005012067.1|448464_449415_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 6
NZ_CP010263	Bordetella pertussis strain I646 chromosome, complete genome	4105348	591469	652660	4105348	protease,transposase	uncultured_Mediterranean_phage(40.0%)	56	NA	NA
WP_005013747.1|591469_592420_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023998122.1|592916_593786_+	phosphonate ABC transporter, permease protein PhnE	NA	NA	NA	NA	NA
WP_010931496.1|593782_594604_+	phosphonate ABC transporter, permease protein PhnE	NA	NA	NA	NA	NA
WP_019247235.1|594803_595295_+	CYTH domain-containing protein	NA	NA	NA	NA	NA
WP_019247236.1|595313_596387_+	CHAD domain-containing protein	NA	NA	NA	NA	NA
WP_023853086.1|596433_597537_-	signal recognition particle-docking protein FtsY	NA	NA	NA	NA	NA
WP_003808577.1|597612_598233_+	16S rRNA (guanine(966)-N(2))-methyltransferase RsmD	NA	NA	NA	NA	NA
WP_003808574.1|598253_598763_+	pantetheine-phosphate adenylyltransferase	NA	A0A1B1IVQ3	uncultured_Mediterranean_phage	42.1	1.2e-28
WP_003808570.1|598817_599069_+	YfhL family 4Fe-4S dicluster ferredoxin	NA	A0A1B1IWY9	uncultured_Mediterranean_phage	53.4	1.6e-18
WP_010931494.1|599132_600266_+	benzoate/H(+) symporter BenE family transporter	NA	NA	NA	NA	NA
WP_003808567.1|600273_600660_-	MOSC N-terminal beta barrel domain-containing protein	NA	NA	NA	NA	NA
WP_010931493.1|600656_603176_-	AsmA family protein	NA	NA	NA	NA	NA
WP_003808563.1|603604_603943_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003808562.1|603939_604446_+	SRPBCC family protein	NA	NA	NA	NA	NA
WP_010931492.1|604507_605308_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931491.1|605418_606360_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931490.1|606453_607989_-	M81 family metallopeptidase	NA	NA	NA	NA	NA
WP_010931489.1|609668_611519_-	dipeptide ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	29.2	1.6e-17
WP_003808549.1|611522_612356_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931488.1|612355_613297_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931487.1|613548_614520_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931486.1|614661_616950_+	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
WP_003808542.1|617256_618165_+	TauD/TfdA family dioxygenase	NA	NA	NA	NA	NA
WP_010931485.1|618219_619185_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931484.1|619259_620921_+	thiamine pyrophosphate-binding protein	NA	NA	NA	NA	NA
WP_010931483.1|620992_621703_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_154698388.1|621669_621834_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|621851_622802_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814152.1|623500_623884_+	membrane protein	NA	NA	NA	NA	NA
WP_010927005.1|623941_624544_+	DUF2946 family protein	NA	NA	NA	NA	NA
WP_003820995.1|624561_624963_-	DoxX family protein	NA	NA	NA	NA	NA
WP_003814158.1|625096_625990_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931481.1|625986_626568_+	NUDIX hydrolase	NA	NA	NA	NA	NA
WP_003814165.1|627362_628097_+	arginyltransferase	NA	NA	NA	NA	NA
WP_010931480.1|628137_629187_+	quinone-dependent dihydroorotate dehydrogenase	NA	NA	NA	NA	NA
WP_003814172.1|629334_629913_-	TIGR01841 family phasin	NA	NA	NA	NA	NA
WP_010931479.1|630299_631277_+	tripartite tricarboxylate transporter substrate binding protein BugD	NA	NA	NA	NA	NA
WP_010931478.1|631370_635765_-	dermonecrotic toxin	NA	NA	NA	NA	NA
WP_003814178.1|635965_636814_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931477.1|636972_637785_-	competence/damage-inducible protein A	NA	NA	NA	NA	NA
WP_005015810.1|637840_638791_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931453.1|638889_639690_-	EI24 domain-containing protein	NA	NA	NA	NA	NA
WP_003814185.1|639751_640135_+	thioredoxin family protein	NA	NA	NA	NA	NA
WP_010931454.1|640146_641580_-	DEAD/DEAH box helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	34.4	1.5e-52
WP_003814188.1|641786_642116_-	AzlD domain-containing protein	NA	NA	NA	NA	NA
WP_010931455.1|642118_642868_-	AzlC family ABC transporter permease	NA	NA	NA	NA	NA
WP_010931456.1|643050_643971_+	branched-chain amino acid transaminase	NA	NA	NA	NA	NA
WP_003814195.1|644017_644230_+	zinc-finger domain-containing protein	NA	NA	NA	NA	NA
WP_010931457.1|644252_644675_+	nuclear transport factor 2 family protein	NA	NA	NA	NA	NA
WP_010931458.1|644691_645792_+	alpha/beta fold hydrolase	NA	NA	NA	NA	NA
WP_010931459.1|645888_647406_-|protease	M48 family metalloprotease	protease	NA	NA	NA	NA
WP_003814203.1|647481_648321_+	UTP--glucose-1-phosphate uridylyltransferase GalU	NA	A0A127AW70	Bacillus_phage	48.9	1.1e-66
WP_003814205.1|648342_649224_-	cytochrome c oxidase assembly protein	NA	NA	NA	NA	NA
WP_003814206.1|649305_650400_-	porin	NA	NA	NA	NA	NA
WP_076879617.1|650693_651644_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_041166340.1|651718_652660_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 7
NZ_CP010263	Bordetella pertussis strain I646 chromosome, complete genome	4105348	657984	704175	4105348	transposase,tRNA,terminase,tail	uncultured_Caudovirales_phage(18.18%)	51	NA	NA
WP_023995141.1|657984_659010_+|tRNA	tRNA dihydrouridine synthase DusB	tRNA	NA	NA	NA	NA
WP_003814221.1|659050_659290_+	DNA-binding protein	NA	NA	NA	NA	NA
WP_010931464.1|659359_660949_+	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase	NA	Q58MG4	Prochlorococcus_phage	47.2	8.7e-65
WP_010931465.1|660948_661497_+	crossover junction endodeoxyribonuclease RuvC	NA	NA	NA	NA	NA
WP_003814226.1|661577_662150_+	Holliday junction branch migration protein RuvA	NA	NA	NA	NA	NA
WP_010927008.1|662168_663080_-	complex I NDUFA9 subunit family protein	NA	NA	NA	NA	NA
WP_003814230.1|663153_664122_-	threo-3-hydroxy-L-aspartate ammonia-lyase	NA	NA	NA	NA	NA
WP_010931466.1|664244_665318_+	Holliday junction branch migration DNA helicase RuvB	NA	A0A127AWE7	Bacillus_phage	25.7	2.3e-08
WP_010931467.1|665322_667143_-	DNA helicase RecQ	NA	L7RCS0	Acanthamoeba_polyphaga_moumouvirus	35.3	3.1e-74
WP_010930800.1|667219_668170_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_033446132.1|668258_668594_+	ASCH domain-containing protein	NA	NA	NA	NA	NA
WP_003819076.1|668727_669378_+	carbonic anhydrase	NA	NA	NA	NA	NA
WP_010931468.1|669399_670818_-	amidase	NA	NA	NA	NA	NA
WP_019248554.1|670887_671643_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019247734.1|671611_672370_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010931471.1|672380_673262_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010931472.1|673278_673986_+	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	25.4	8.2e-07
WP_010931473.1|673988_674747_+	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	24.4	4.4e-14
WP_010931474.1|674956_676699_+	nitrite/sulfite reductase	NA	NA	NA	NA	NA
WP_010925795.1|676691_677216_+	DUF934 domain-containing protein	NA	NA	NA	NA	NA
WP_010931475.1|677255_678050_-	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019248926.1|678217_679291_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|679389_680340_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247378.1|680591_680798_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931451.1|680869_681481_-	S24 family peptidase	NA	NA	NA	NA	NA
WP_023853179.1|682035_682287_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_161633094.1|682279_682969_+	hypothetical protein	NA	NA	NA	NA	NA
WP_023853183.1|682986_683208_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|683225_684176_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247942.1|684815_685301_+|transposase	transposase	transposase	C7U0W1	Enterobacteria_phage	61.5	7.3e-39
WP_010931447.1|685287_686565_+|terminase	terminase large subunit	terminase	A0A1B1P9C9	Acinetobacter_phage	64.7	2.4e-150
WP_010931446.1|686567_687986_+	DUF4055 domain-containing protein	NA	R9TF43	Synechococcus_phage	42.1	2.2e-99
WP_010931445.1|688014_689070_+	hypothetical protein	NA	A0A0H5BBX3	Pseudomonas_phage	50.6	2.6e-97
WP_010931444.1|689075_689318_+	hypothetical protein	NA	A0A0H5AUE5	Pseudomonas_phage	53.2	5.6e-16
WP_010931443.1|689440_690043_+	hypothetical protein	NA	R9TF81	Synechococcus_phage	43.6	7.9e-27
WP_005012808.1|690471_691422_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931442.1|692096_692348_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247789.1|692410_692893_+	hypothetical protein	NA	A0A2H4JE38	uncultured_Caudovirales_phage	37.1	1.8e-13
WP_010931440.1|692894_693095_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931439.1|693094_693490_+	hypothetical protein	NA	A0A2D2W284	Stenotrophomonas_phage	35.0	7.8e-07
WP_010931438.1|693486_693885_+	hypothetical protein	NA	I6PCW1	Cronobacter_phage	38.0	4.2e-16
WP_010931437.1|693881_694304_+	DUF4128 domain-containing protein	NA	NA	NA	NA	NA
WP_010931436.1|694311_694812_+	HNH endonuclease	NA	A0A1I9SEX5	Klebsiella_phage	45.1	4.4e-31
WP_010931435.1|695066_695585_+|tail	phage tail protein	tail	A0A1S5R1H0	Pseudomonas_phage	38.3	5.4e-24
WP_003813412.1|695594_695924_+|tail	phage tail assembly chaperone	tail	A0A2H4J121	uncultured_Caudovirales_phage	44.0	2.9e-15
WP_010931434.1|695941_696232_+	DUF1799 domain-containing protein	NA	A0A2H4JBP7	uncultured_Caudovirales_phage	45.2	3.7e-14
WP_010931433.1|696257_698870_+|tail	phage tail tape measure protein	tail	A0A2H4J107	uncultured_Caudovirales_phage	38.6	4.9e-105
WP_010931432.1|698879_699239_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931431.1|699306_699840_+	DUF1833 family protein	NA	A5A3Q9	Burkholderia_phage	46.9	1.1e-40
WP_010931430.1|699836_700226_+	C40 family peptidase	NA	A0A0G3EYJ9	Achromobacter_phage	50.0	3.0e-35
WP_010931429.1|700218_704175_+	DUF1983 domain-containing protein	NA	A0A0B5A1N2	Achromobacter_phage	40.8	3.9e-215
>prophage 8
NZ_CP010263	Bordetella pertussis strain I646 chromosome, complete genome	4105348	710341	764271	4105348	transposase,tRNA	Planktothrix_phage(50.0%)	46	NA	NA
WP_003814636.1|710341_712072_+|tRNA	proline--tRNA ligase	tRNA	A0A2K9L3R9	Tupanvirus	29.4	4.6e-11
WP_010931419.1|712124_712553_+	tol-pal system-associated acyl-CoA thioesterase	NA	NA	NA	NA	NA
WP_003814641.1|712555_713236_+	protein TolQ	NA	NA	NA	NA	NA
WP_003814643.1|713235_713694_+	protein TolR	NA	NA	NA	NA	NA
WP_010931418.1|713730_714705_+	cell envelope integrity protein TolA	NA	NA	NA	NA	NA
WP_010931417.1|714721_716038_+	Tol-Pal system protein TolB	NA	NA	NA	NA	NA
WP_003814650.1|716069_716567_+	peptidoglycan-associated lipoprotein Pal	NA	NA	NA	NA	NA
WP_003814652.1|716653_717343_+	tol-pal system protein YbgF	NA	NA	NA	NA	NA
WP_010931416.1|717342_718392_+	iron ABC transporter permease	NA	NA	NA	NA	NA
WP_003814657.1|718388_719183_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.6	2.4e-15
WP_019247923.1|719351_719702_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247922.1|719677_720235_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_005012808.1|721364_722315_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929184.1|724452_725682_+	spore maturation protein	NA	NA	NA	NA	NA
WP_003814419.1|725684_727127_-	pyruvate kinase	NA	NA	NA	NA	NA
WP_010931414.1|727231_728377_+	glycerate kinase	NA	W6LM47	Streptococcus_phage	42.2	1.7e-41
WP_010931413.1|728408_729206_-	16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA	NA	NA	NA	NA	NA
WP_010931412.1|729230_730790_-	chaperone SurA	NA	NA	NA	NA	NA
WP_010931411.1|730786_733159_-	LPS-assembly protein LptD	NA	NA	NA	NA	NA
WP_010931410.1|733268_734372_+	phosphotransferase	NA	NA	NA	NA	NA
WP_010931409.1|734371_735064_+	nucleotidyltransferase family protein	NA	NA	NA	NA	NA
WP_003814436.1|735207_735909_+	membrane protein	NA	NA	NA	NA	NA
WP_003814437.1|735893_736271_-	4a-hydroxytetrahydrobiopterin dehydratase	NA	NA	NA	NA	NA
WP_005012067.1|737002_737953_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814441.1|738112_738985_-	oxaloacetate decarboxylase	NA	NA	NA	NA	NA
WP_003814443.1|739325_739544_+	DUF1059 domain-containing protein	NA	NA	NA	NA	NA
WP_019247242.1|739583_740963_-	aminotransferase class III-fold pyridoxal phosphate-dependent enzyme	NA	NA	NA	NA	NA
WP_010929976.1|741004_742402_-	amidase family protein	NA	NA	NA	NA	NA
WP_010927038.1|742441_744094_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.8	6.0e-16
WP_010929977.1|744097_744982_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010929978.1|744981_745923_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010929979.1|746001_747621_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929980.1|747787_748603_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814459.1|748670_749240_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005013747.1|749240_750191_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814461.1|750845_751943_+	carboxynorspermidine decarboxylase	NA	NA	NA	NA	NA
WP_003814462.1|751976_753242_+	saccharopine dehydrogenase family protein	NA	NA	NA	NA	NA
WP_010929591.1|753399_754350_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929982.1|754593_755184_+	polyisoprenoid-binding protein	NA	NA	NA	NA	NA
WP_010929983.1|755199_757644_-	TonB-dependent siderophore receptor	NA	NA	NA	NA	NA
WP_003814467.1|757763_758735_-	FecR family protein	NA	NA	NA	NA	NA
WP_023852739.1|758866_759391_+	sigma-70 family RNA polymerase sigma factor	NA	NA	NA	NA	NA
WP_005012067.1|759350_760301_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929984.1|760522_762718_-	DUF1156 domain-containing protein	NA	NA	NA	NA	NA
WP_010929985.1|762790_763219_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_005012808.1|763320_764271_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 9
NZ_CP010263	Bordetella pertussis strain I646 chromosome, complete genome	4105348	855149	904413	4105348	transposase,holin	Vibrio_phage(33.33%)	40	NA	NA
WP_010929591.1|855149_856100_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247352.1|856117_856672_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003813949.1|856673_857108_+	PaaI family thioesterase	NA	NA	NA	NA	NA
WP_003813951.1|857104_857539_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003813952.1|857522_858326_-	phosphatase PAP2 family protein	NA	NA	NA	NA	NA
WP_003813954.1|858342_859158_-	metallophosphoesterase	NA	NA	NA	NA	NA
WP_019248500.1|859154_859970_-	diacylglycerol kinase	NA	NA	NA	NA	NA
WP_010930033.1|860116_860818_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003813960.1|860845_862804_-|holin	choline BCCT transporter BetT	holin	A0A2I7QNT1	Vibrio_phage	30.3	8.0e-28
WP_005013747.1|862886_863837_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930032.1|864057_864726_+	transcriptional regulator	NA	NA	NA	NA	NA
WP_010930031.1|864849_865956_+	efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
WP_010930030.1|865968_869082_+	MexW/MexI family multidrug efflux RND transporter permease subunit	NA	S5VTK5	Leptospira_phage	21.5	4.5e-57
WP_010930029.1|869078_870572_+	efflux transporter outer membrane subunit	NA	NA	NA	NA	NA
WP_010926969.1|870586_871258_+	transcriptional regulator	NA	NA	NA	NA	NA
WP_003813974.1|871301_871796_-	azurin	NA	NA	NA	NA	NA
WP_010930027.1|871936_872584_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_023853163.1|872687_874736_+	hydantoinase/oxoprolinase family protein	NA	NA	NA	NA	NA
WP_010930025.1|874732_876745_+	hydantoinase B/oxoprolinase family protein	NA	NA	NA	NA	NA
WP_010930024.1|876770_878105_+	FAD-binding oxidoreductase	NA	NA	NA	NA	NA
WP_003813981.1|878213_879206_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003813982.1|879272_881357_-	rhodanese-like domain-containing protein	NA	NA	NA	NA	NA
WP_010930023.1|881381_882353_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930022.1|882481_883513_-	succinylglutamate desuccinylase/aspartoacylase family protein	NA	NA	NA	NA	NA
WP_010930021.1|883516_884668_-	cystathionine beta-lyase	NA	NA	NA	NA	NA
WP_076879542.1|884838_885762_+	transcriptional regulator LrhA	NA	NA	NA	NA	NA
WP_003813987.1|885839_886664_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_023994644.1|886860_887877_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003813988.1|888073_889057_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930019.1|890655_892044_-	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_003813991.1|892074_893064_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003813992.1|893174_894407_-	methylaspartate ammonia-lyase	NA	NA	NA	NA	NA
WP_003813993.1|894688_895489_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930018.1|895511_897743_-|holin	choline BCCT transporter BetT	holin	NA	NA	NA	NA
WP_010930017.1|898530_898977_-	preprotein translocase subunit SecG	NA	NA	NA	NA	NA
WP_003813996.1|898998_899745_-	triose-phosphate isomerase	NA	NA	NA	NA	NA
WP_003813997.1|899888_900866_-	NAD(P)H-quinone oxidoreductase	NA	NA	NA	NA	NA
WP_010930016.1|901499_902111_+	PIN domain-containing protein	NA	K4HZX4	Acidithiobacillus_phage	32.5	3.3e-12
WP_003813999.1|902104_903322_-	threonine ammonia-lyase	NA	NA	NA	NA	NA
WP_005013747.1|903462_904413_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 10
NZ_CP010263	Bordetella pertussis strain I646 chromosome, complete genome	4105348	914025	978965	4105348	transposase	Bacillus_phage(18.18%)	58	NA	NA
WP_005012067.1|914025_914976_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930051.1|914972_916805_-	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	26.4	1.3e-27
WP_010930052.1|917203_917863_+	thiopurine S-methyltransferase	NA	NA	NA	NA	NA
WP_023852837.1|917956_918103_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003809770.1|918211_918379_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930054.1|918390_919071_-	DUF3313 domain-containing protein	NA	NA	NA	NA	NA
WP_010930055.1|919352_920069_+	flagellar brake protein	NA	NA	NA	NA	NA
WP_010930056.1|920083_921385_-	phospholipase A	NA	NA	NA	NA	NA
WP_029444137.1|923529_926418_+	HD domain-containing protein	NA	NA	NA	NA	NA
WP_010930057.1|926641_927994_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_004568140.1|928022_928544_+	acetyl-CoA carboxylase biotin carboxyl carrier protein	NA	NA	NA	NA	NA
WP_003819989.1|928540_929995_+	carboxylase	NA	NA	NA	NA	NA
WP_023852826.1|930029_930278_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247557.1|930383_931259_+	amidohydrolase	NA	NA	NA	NA	NA
WP_010930060.1|931284_932340_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930061.1|932352_933144_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930062.1|933176_934547_+	acetyl-CoA carboxylase biotin carboxylase subunit	NA	NA	NA	NA	NA
WP_005012067.1|935723_936674_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930064.1|936726_936948_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003810832.1|937107_937320_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003810835.1|937439_938558_+	mannose-6-phosphate isomerase	NA	NA	NA	NA	NA
WP_003810839.1|939063_939315_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930066.1|939427_940378_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003810840.1|940374_940758_-	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA	NA
WP_023852913.1|940812_942627_-	ABC transporter ATP-binding protein/permease	NA	W8CYL7	Bacillus_phage	27.9	5.7e-44
WP_010930068.1|942776_943604_+	aldo/keto reductase	NA	A0A2H4PQR8	Staphylococcus_phage	47.4	1.7e-67
WP_010930069.1|943649_944630_+	aldo/keto reductase	NA	NA	NA	NA	NA
WP_003810850.1|944626_944839_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003810851.1|944835_946017_-	PepSY domain-containing protein	NA	NA	NA	NA	NA
WP_019248496.1|946180_946915_+	metallophosphoesterase	NA	A0A2H4J0P0	uncultured_Caudovirales_phage	49.2	1.9e-62
WP_010930071.1|946916_949529_-	PBP1A family penicillin-binding protein	NA	NA	NA	NA	NA
WP_003810859.1|949664_951578_-	S9 family peptidase	NA	NA	NA	NA	NA
WP_010930072.1|952193_952604_-	PaaI family thioesterase	NA	NA	NA	NA	NA
WP_003810865.1|952701_953787_+	DNA polymerase IV	NA	NA	NA	NA	NA
WP_005012067.1|953885_954836_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930088.1|954832_955807_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003821497.1|955931_956843_+	LysR family transcriptional regulator	NA	Q6JIH3	Burkholderia_virus	27.6	4.4e-05
WP_004566317.1|957119_957512_-	type II toxin-antitoxin system HicB family antitoxin	NA	A0A0R6PJ17	Moraxella_phage	45.0	4.8e-25
WP_005012808.1|957641_958592_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930090.1|958621_958804_-	type II toxin-antitoxin system HicA family toxin	NA	A0A1L2JY37	Aeribacillus_phage	56.1	3.7e-12
WP_010930091.1|959576_960758_-	MFS transporter	NA	NA	NA	NA	NA
WP_010930092.1|960973_961651_-	HAD-IA family hydrolase	NA	NA	NA	NA	NA
WP_010930093.1|961647_962373_-	bifunctional 3-demethylubiquinone 3-O-methyltransferase/2-octaprenyl-6-hydroxy phenol methylase	NA	NA	NA	NA	NA
WP_010930094.1|962498_963080_-	OmpA family protein	NA	NA	NA	NA	NA
WP_010930095.1|963450_966132_+	DNA gyrase subunit A	NA	G3M9Z5	Bacillus_virus	33.5	3.2e-104
WP_010930096.1|966131_967265_+	3-phosphoserine/phosphohydroxythreonine transaminase	NA	M1Q1P2	Streptococcus_phage	44.0	6.4e-78
WP_010930097.1|967257_968343_+	prephenate dehydratase	NA	NA	NA	NA	NA
WP_010930098.1|968429_969329_+	prephenate dehydrogenase/arogenate dehydrogenase family protein	NA	NA	NA	NA	NA
WP_010930099.1|969325_970654_+	3-phosphoshikimate 1-carboxyvinyltransferase	NA	NA	NA	NA	NA
WP_010930100.1|970668_971340_+	(d)CMP kinase	NA	NA	NA	NA	NA
WP_010930101.1|971527_973243_+	30S ribosomal protein S1	NA	NA	NA	NA	NA
WP_010930102.1|973244_973604_+	integration host factor subunit beta	NA	NA	NA	NA	NA
WP_010930103.1|973795_974110_+	DUF1049 domain-containing protein	NA	NA	NA	NA	NA
WP_010930104.1|974152_975373_+	lipopolysaccharide assembly protein LapB	NA	NA	NA	NA	NA
WP_010930105.1|975369_976311_+	D-glycero-beta-D-manno-heptose-7-phosphate kinase	NA	A0A2H4N7X4	Lake_Baikal_phage	28.1	1.5e-16
WP_003821513.1|976307_977297_+	ADP-glyceromanno-heptose 6-epimerase	NA	E3SJ87	Synechococcus_phage	34.4	2.2e-26
WP_033446303.1|977331_977916_+	helix-hairpin-helix domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|978014_978965_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 11
NZ_CP010263	Bordetella pertussis strain I646 chromosome, complete genome	4105348	998365	1061516	4105348	transposase	Enterococcus_phage(16.67%)	54	NA	NA
WP_005012067.1|998365_999316_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930118.1|999420_1000470_+	NADP(H)-dependent aldo-keto reductase	NA	NA	NA	NA	NA
WP_010929632.1|1000607_1001624_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010926548.1|1003132_1003705_-	chorismate lyase	NA	NA	NA	NA	NA
WP_010930119.1|1003764_1004496_+	rRNA pseudouridine synthase	NA	NA	NA	NA	NA
WP_029443805.1|1004547_1005465_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930121.1|1006272_1009452_+	efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_014486063.1|1009448_1010831_+	efflux transporter outer membrane subunit	NA	NA	NA	NA	NA
WP_010930123.1|1010900_1011152_-	GlsB/YeaQ/YmgE family stress response membrane protein	NA	NA	NA	NA	NA
WP_010930124.1|1011297_1011912_-	SCO family protein	NA	NA	NA	NA	NA
WP_019248379.1|1012098_1014213_-	M3 family metallopeptidase	NA	NA	NA	NA	NA
WP_003811948.1|1014288_1015140_-	bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD	NA	A0A249XZQ2	Enterococcus_phage	39.8	2.1e-33
WP_010930126.1|1015136_1015763_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_003817147.1|1015759_1017514_-	PAS domain S-box protein	NA	NA	NA	NA	NA
WP_010930127.1|1017806_1020512_+	pyruvate dehydrogenase (acetyl-transferring), homodimeric type	NA	NA	NA	NA	NA
WP_010930128.1|1020524_1022186_+	dihydrolipoyllysine-residue acetyltransferase	NA	NA	NA	NA	NA
WP_010930129.1|1022198_1023989_+	dihydrolipoyl dehydrogenase	NA	A0A2K5B2C5	Erysipelothrix_phage	25.2	2.4e-39
WP_003817151.1|1024210_1025386_-	FliC/FljB family flagellin	NA	NA	NA	NA	NA
WP_010929584.1|1025428_1026379_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930130.1|1026477_1027218_-	16S rRNA (uracil(1498)-N(3))-methyltransferase	NA	NA	NA	NA	NA
WP_010930131.1|1027412_1029449_+	transketolase	NA	NA	NA	NA	NA
WP_010930132.1|1029466_1030477_+	type I glyceraldehyde-3-phosphate dehydrogenase	NA	NA	NA	NA	NA
WP_010930133.1|1030594_1031788_+	phosphoglycerate kinase	NA	NA	NA	NA	NA
WP_010930134.1|1031817_1032591_-	enoyl-ACP reductase FabI	NA	NA	NA	NA	NA
WP_010930135.1|1032587_1033778_-	acetate kinase	NA	NA	NA	NA	NA
WP_003809454.1|1033803_1034742_-	phosphate acetyltransferase	NA	NA	NA	NA	NA
WP_010930136.1|1034738_1037087_-	DUF3141 domain-containing protein	NA	NA	NA	NA	NA
WP_010930137.1|1037241_1037883_-	glutathione transferase	NA	NA	NA	NA	NA
WP_023853531.1|1037986_1039120_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994624.1|1039212_1039365_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930138.1|1039396_1039945_-	DinB family protein	NA	NA	NA	NA	NA
WP_003819814.1|1039963_1040449_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_010930139.1|1040626_1041565_+	DnaJ domain-containing protein	NA	A0A0P0YMJ9	Yellowstone_lake_phycodnavirus	24.1	5.6e-11
WP_003809467.1|1041567_1041885_+	MerR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247197.1|1041930_1042875_+	AzlC family ABC transporter permease	NA	NA	NA	NA	NA
WP_010930141.1|1044555_1045206_+	molybdopterin adenylyltransferase	NA	NA	NA	NA	NA
WP_003809479.1|1045259_1045595_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930142.1|1045591_1046452_+	M23 family metallopeptidase	NA	A0A292GJG6	Xanthomonas_phage	36.1	2.6e-15
WP_003819817.1|1046468_1046750_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003809486.1|1046823_1047087_-	translation initiation factor IF-1	NA	NA	NA	NA	NA
WP_005012067.1|1047330_1048281_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811933.1|1048579_1049317_-	RNA polymerase sigma factor FliA	NA	NA	NA	NA	NA
WP_010930143.1|1049752_1050076_+	flagellar transcriptional regulator FlhD	NA	NA	NA	NA	NA
WP_003811929.1|1050110_1050671_+	flagellar transcriptional regulator FlhC	NA	NA	NA	NA	NA
WP_003811927.1|1050791_1051667_+	flagellar motor stator protein MotA	NA	NA	NA	NA	NA
WP_003817154.1|1051679_1052627_+	flagellar motor protein MotB	NA	NA	NA	NA	NA
WP_019247393.1|1052728_1053022_+	response regulator	NA	NA	NA	NA	NA
WP_010930144.1|1053048_1055106_+	chemotaxis protein CheA	NA	NA	NA	NA	NA
WP_003811919.1|1055120_1055621_+	chemotaxis protein CheW	NA	NA	NA	NA	NA
WP_010930145.1|1055694_1057401_+	Tar ligand binding domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	41.7	1.4e-12
WP_010930146.1|1058264_1059317_+	chemotaxis response regulator protein-glutamate methylesterase	NA	NA	NA	NA	NA
WP_003811911.1|1059369_1059759_+	chemotaxis response regulator CheY	NA	Q56AR1	Bacillus_thuringiensis_phage	33.3	5.7e-10
WP_003817162.1|1059767_1060400_+	protein phosphatase CheZ	NA	NA	NA	NA	NA
WP_010931363.1|1060499_1061516_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
>prophage 12
NZ_CP010263	Bordetella pertussis strain I646 chromosome, complete genome	4105348	1067500	1126514	4105348	protease,transposase,tRNA,holin	uncultured_Mediterranean_phage(37.5%)	50	NA	NA
WP_015041211.1|1067500_1068928_-|tRNA	tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB	tRNA	NA	NA	NA	NA
WP_010930158.1|1069865_1070882_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003809411.1|1071214_1072150_-	protein translocase subunit SecF	NA	A0A1B1IVP7	uncultured_Mediterranean_phage	35.5	3.0e-41
WP_010930154.1|1072199_1074080_-	protein translocase subunit SecD	NA	NA	NA	NA	NA
WP_003809416.1|1074146_1074491_-	preprotein translocase subunit YajC	NA	A0A1B1IVR5	uncultured_Mediterranean_phage	40.4	1.0e-10
WP_010930155.1|1074635_1075772_-|tRNA	tRNA guanosine(34) transglycosylase Tgt	tRNA	A0A1B1IVQ4	uncultured_Mediterranean_phage	44.4	1.9e-85
WP_023853534.1|1075768_1076842_-|tRNA	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	tRNA	NA	NA	NA	NA
WP_003809423.1|1076999_1078436_+	D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase	NA	NA	NA	NA	NA
WP_010930157.1|1078526_1079168_+	uracil phosphoribosyltransferase	NA	NA	NA	NA	NA
WP_023853536.1|1079503_1080520_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_019248433.1|1080852_1083600_+	pertactin autotransporter	NA	NA	NA	NA	NA
WP_010930160.1|1083666_1085088_-	uroporphyrinogen-III C-methyltransferase	NA	NA	NA	NA	NA
WP_003809431.1|1085351_1086068_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003809432.1|1086152_1086470_+	DUF883 domain-containing protein	NA	NA	NA	NA	NA
WP_003819794.1|1086510_1086924_+|holin	phage holin family protein	holin	NA	NA	NA	NA
WP_010930161.1|1086925_1087285_+	hypothetical protein	NA	NA	NA	NA	NA
WP_023853525.1|1087327_1088872_-	4-hydroxy-3-polyprenylbenzoate decarboxylase	NA	NA	NA	NA	NA
WP_010930163.1|1088955_1089786_+	lytic transglycosylase domain-containing protein	NA	NA	NA	NA	NA
WP_010930164.1|1089820_1090975_-	pyridoxal phosphate-dependent aminotransferase	NA	NA	NA	NA	NA
WP_010930165.1|1091017_1091890_+	hypothetical protein	NA	NA	NA	NA	NA
WP_014486065.1|1092006_1094295_+	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
WP_003809441.1|1095501_1095966_+	barstar family protein	NA	NA	NA	NA	NA
WP_005013747.1|1095992_1096943_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_154698393.1|1096960_1097098_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930167.1|1097310_1098087_-	phosphate ABC transporter ATP-binding protein PstB	NA	G9BWD6	Planktothrix_phage	28.7	4.3e-17
WP_003809638.1|1098131_1098989_-	phosphate ABC transporter permease PstA	NA	NA	NA	NA	NA
WP_010930169.1|1099010_1100027_-	phosphate ABC transporter permease subunit PstC	NA	NA	NA	NA	NA
WP_014486066.1|1100161_1101202_-	phosphate ABC transporter substrate-binding protein PstS	NA	M4QHS4	Cyanophage	40.2	2.1e-51
WP_010930171.1|1101396_1103478_-	polyphosphate kinase 1	NA	NA	NA	NA	NA
WP_010930172.1|1103713_1105207_+	exopolyphosphatase	NA	NA	NA	NA	NA
WP_003809629.1|1105437_1106232_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_003819875.1|1106452_1107811_-	phosphoglucosamine mutase	NA	NA	NA	NA	NA
WP_010930173.1|1107807_1108650_-	dihydropteroate synthase	NA	A0A0B5J4J5	Pandoravirus	32.5	3.2e-26
WP_010930174.1|1108668_1110555_-|protease	ATP-dependent zinc metalloprotease FtsH	protease	M4QMW8	Micromonas_pusilla_virus	41.5	1.4e-109
WP_162096758.1|1110496_1110748_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930175.1|1110792_1111425_-	RlmE family RNA methyltransferase	NA	NA	NA	NA	NA
WP_003809618.1|1111443_1112046_+	YhbY family RNA-binding protein	NA	NA	NA	NA	NA
WP_010929591.1|1112197_1113148_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_161633091.1|1113728_1114436_+	DUF192 domain-containing protein	NA	NA	NA	NA	NA
WP_003812707.1|1114794_1115781_-	homoserine kinase	NA	NA	NA	NA	NA
WP_010930178.1|1115920_1116934_+|tRNA	tRNA dihydrouridine(20/20a) synthase DusA	tRNA	NA	NA	NA	NA
WP_005012067.1|1116930_1117881_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_155120815.1|1117898_1118039_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003812703.1|1117993_1118452_-	CBS domain-containing protein	NA	NA	NA	NA	NA
WP_003812701.1|1118488_1119802_-	YihY family inner membrane protein	NA	NA	NA	NA	NA
WP_010930180.1|1119819_1120191_+	DUF2069 domain-containing protein	NA	NA	NA	NA	NA
WP_019248549.1|1120187_1121651_+	YdiU family protein	NA	A0A075BSJ0	Microcystis_phage	32.5	1.7e-43
WP_010930182.1|1121791_1122520_+	response regulator transcription factor	NA	NA	NA	NA	NA
WP_010930183.1|1122501_1125351_-	EAL domain-containing protein	NA	NA	NA	NA	NA
WP_010929591.1|1125563_1126514_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 13
NZ_CP010263	Bordetella pertussis strain I646 chromosome, complete genome	4105348	1317951	1386439	4105348	transposase	Planktothrix_phage(33.33%)	58	NA	NA
WP_005012808.1|1317951_1318902_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930283.1|1319670_1320309_-	glutathione S-transferase	NA	NA	NA	NA	NA
WP_019247793.1|1321198_1321645_+	aspartate/glutamate racemase family protein	NA	NA	NA	NA	NA
WP_010930284.1|1321726_1322428_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.4	1.3e-17
WP_003811277.1|1322428_1323196_-	high-affinity branched-chain amino acid ABC transporter ATP-binding protein LivG	NA	A0A2H4PQG7	Staphylococcus_phage	26.4	1.2e-14
WP_010930285.1|1323192_1324431_-	high-affinity branched-chain amino acid ABC transporter permease LivM	NA	NA	NA	NA	NA
WP_003811272.1|1324430_1325357_-	high-affinity branched-chain amino acid ABC transporter permease LivH	NA	NA	NA	NA	NA
WP_010930286.1|1325459_1326575_-	branched-chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_005015810.1|1326590_1327541_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930287.1|1327894_1328476_-	queuosine precursor transporter	NA	A0A2I7SAW6	Vibrio_phage	37.3	9.4e-17
WP_003811267.1|1328472_1329306_-	pyrroline-5-carboxylate reductase	NA	NA	NA	NA	NA
WP_010930288.1|1329516_1330830_+	sn-glycerol-3-phosphate ABC transporter substrate-binding protein UgpB	NA	NA	NA	NA	NA
WP_003811262.1|1331006_1331888_+	sn-glycerol-3-phosphate ABC transporter permease UgpA	NA	NA	NA	NA	NA
WP_003811259.1|1331907_1332759_+	sn-glycerol-3-phosphate ABC transporter permease UgpE	NA	NA	NA	NA	NA
WP_010930289.1|1332811_1333900_+	sn-glycerol-3-phosphate import ATP-binding protein UgpC	NA	G9BWD6	Planktothrix_phage	31.2	2.2e-19
WP_010930290.1|1334010_1335138_-	branched-chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003811244.1|1335372_1335984_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_010929584.1|1336082_1337033_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811293.1|1337254_1337632_-	DUF423 domain-containing protein	NA	NA	NA	NA	NA
WP_003811295.1|1337779_1338277_+	DUF2384 domain-containing protein	NA	NA	NA	NA	NA
WP_010930291.1|1338273_1338801_+	RES family NAD+ phosphorylase	NA	NA	NA	NA	NA
WP_003811298.1|1338934_1339750_+	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930292.1|1339762_1340944_-	alpha-hydroxy-acid oxidizing protein	NA	NA	NA	NA	NA
WP_003811301.1|1340991_1341885_-	phosphatidylserine decarboxylase	NA	NA	NA	NA	NA
WP_010930293.1|1342011_1342482_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930294.1|1342607_1343435_-	DUF3298 domain-containing protein	NA	NA	NA	NA	NA
WP_003811306.1|1343463_1344240_-	lipoate--protein ligase family protein	NA	NA	NA	NA	NA
WP_023852802.1|1344236_1344512_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930295.1|1344526_1344991_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_010930296.1|1345002_1345704_-	glutathione S-transferase N-terminal domain-containing protein	NA	NA	NA	NA	NA
WP_003811310.1|1345813_1346314_-	glutathione peroxidase	NA	Q6VZR0	Canarypox_virus	38.4	4.7e-25
WP_010930297.1|1346396_1347575_-	DUF1501 domain-containing protein	NA	NA	NA	NA	NA
WP_003811313.1|1349202_1349538_+	tetratricopeptide repeat protein	NA	NA	NA	NA	NA
WP_010930298.1|1349725_1351174_+	CoA transferase	NA	NA	NA	NA	NA
WP_023852799.1|1351231_1351576_+	arsenate reductase (glutaredoxin)	NA	A0A2H4J8T1	uncultured_Caudovirales_phage	58.4	3.0e-31
WP_003811316.1|1351682_1352222_-	peroxiredoxin	NA	NA	NA	NA	NA
WP_005012067.1|1352314_1353265_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_162268679.1|1353282_1353522_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247530.1|1354003_1354435_-	YXWGXW repeat-containing protein	NA	NA	NA	NA	NA
WP_010930300.1|1354616_1355021_-	DoxX family protein	NA	NA	NA	NA	NA
WP_010930301.1|1356257_1356581_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247533.1|1356583_1357471_-	aldo/keto reductase	NA	NA	NA	NA	NA
WP_003811322.1|1357503_1357929_-	universal stress protein	NA	NA	NA	NA	NA
WP_019247534.1|1358000_1358354_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003811324.1|1358593_1359100_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930302.1|1359138_1360470_-	transcriptional regulator PtsJ	NA	NA	NA	NA	NA
WP_003811326.1|1360529_1361345_+	YggS family pyridoxal phosphate-dependent enzyme	NA	NA	NA	NA	NA
WP_010930303.1|1361341_1362196_+	pyridoxine/pyridoxal/pyridoxamine kinase	NA	NA	NA	NA	NA
WP_010930304.1|1365259_1367803_-	malto-oligosyltrehalose synthase	NA	NA	NA	NA	NA
WP_010930305.1|1369169_1370924_-	malto-oligosyltrehalose trehalohydrolase	NA	NA	NA	NA	NA
WP_010930306.1|1370920_1373041_-	glycogen debranching protein GlgX	NA	NA	NA	NA	NA
WP_010930307.1|1373045_1375241_-	1,4-alpha-glucan branching protein GlgB	NA	NA	NA	NA	NA
WP_010930308.1|1375237_1378579_-	maltose alpha-D-glucosyltransferase	NA	NA	NA	NA	NA
WP_010930208.1|1381381_1382332_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811361.1|1382397_1382577_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247449.1|1382693_1383449_-	alpha/beta fold hydrolase	NA	NA	NA	NA	NA
WP_010930310.1|1383435_1384581_-	DUF3182 family protein	NA	NA	NA	NA	NA
WP_010930208.1|1385488_1386439_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 14
NZ_CP010263	Bordetella pertussis strain I646 chromosome, complete genome	4105348	1412442	1463614	4105348	transposase,tRNA	Salmonella_phage(20.0%)	48	NA	NA
WP_010930208.1|1412442_1413393_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|1413491_1414442_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005015014.1|1414557_1414890_-	multidrug transporter	NA	NA	NA	NA	NA
WP_010929073.1|1414886_1415573_-	Smr/MutS family protein	NA	NA	NA	NA	NA
WP_010930948.1|1415559_1416519_-	thioredoxin-disulfide reductase	NA	A0A2I2L5E1	Orpheovirus	40.2	3.1e-57
WP_003814032.1|1416560_1418921_+	DNA translocase FtsK	NA	S5VNE3	Mycobacterium_phage	48.0	7.6e-81
WP_010930946.1|1418920_1419553_+	outer membrane lipoprotein chaperone LolA	NA	NA	NA	NA	NA
WP_010930945.1|1419654_1420995_+	replication-associated recombination protein A	NA	G3MBE0	Bacillus_virus	38.9	1.6e-75
WP_010930944.1|1421041_1422397_+|tRNA	serine--tRNA ligase	tRNA	A0A1B1IVT2	uncultured_Mediterranean_phage	47.5	1.6e-83
WP_170954289.1|1422522_1423167_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003814024.1|1423111_1423429_-	virulence factor	NA	NA	NA	NA	NA
WP_003814023.1|1423701_1424217_-	hypothetical protein	NA	T1SAR8	Salmonella_phage	44.6	5.1e-06
WP_003814022.1|1424310_1424472_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003814021.1|1424487_1425243_-	GGDEF domain-containing protein	NA	NA	NA	NA	NA
WP_019247690.1|1425581_1425788_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003814020.1|1425795_1426455_-	NAAT family transporter	NA	NA	NA	NA	NA
WP_010930941.1|1426749_1428954_-	TonB-dependent alcaligin siderophore receptor FauA	NA	NA	NA	NA	NA
WP_010930940.1|1429064_1430288_-	alcaligin siderophore export MFS transporter Bcr	NA	S4TR35	Salmonella_phage	29.4	9.8e-24
WP_003814017.1|1430410_1431385_-	alcaligin siderophore biosynthesis transcriptional regulator AlcR	NA	NA	NA	NA	NA
WP_005013753.1|1431452_1432646_-	alcaligin siderophore biosynthesis protein AlcE	NA	NA	NA	NA	NA
WP_003814016.1|1432660_1433461_-	alcaligin siderophore biosynthesis protein AlcD	NA	NA	NA	NA	NA
WP_010930939.1|1433457_1435314_-	alcaligin siderophore biosynthesis protein AlcC	NA	NA	NA	NA	NA
WP_003814014.1|1435310_1435916_-	alcaligin siderophore biosynthesis protein AlcB	NA	NA	NA	NA	NA
WP_003814013.1|1435934_1437320_-	alcaligin siderophore biosynthesis protein AlcA	NA	NA	NA	NA	NA
WP_003814012.1|1438045_1439272_+	cation:proton antiporter	NA	NA	NA	NA	NA
WP_003814011.1|1439360_1440143_+	3-hydroxybutyrate dehydrogenase	NA	NA	NA	NA	NA
WP_005012067.1|1440241_1441192_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814010.1|1441218_1441992_+	peroxide stress protein YaaA	NA	NA	NA	NA	NA
WP_003814009.1|1442003_1443245_+	MFS transporter	NA	NA	NA	NA	NA
WP_076879548.1|1445026_1445977_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930389.1|1446008_1447106_+	sensor domain-containing diguanylate cyclase	NA	A0A127AWB9	Bacillus_phage	37.3	3.5e-20
WP_005013747.1|1447102_1448053_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812612.1|1448474_1448867_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019248759.1|1448872_1449649_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_003812608.1|1450036_1451986_+|tRNA	threonine--tRNA ligase	tRNA	A0A2K9L297	Tupanvirus	36.0	4.1e-125
WP_033446215.1|1452006_1452552_+	translation initiation factor IF-3	NA	A0A2L0UZ54	Agrobacterium_phage	29.9	9.1e-14
WP_010930391.1|1452688_1453645_+	glutathione synthase	NA	NA	NA	NA	NA
WP_003812601.1|1453655_1454054_+	PTS mannose transporter subunit IIA	NA	NA	NA	NA	NA
WP_003812598.1|1454169_1454439_+	HPr family phosphocarrier protein	NA	NA	NA	NA	NA
WP_010930392.1|1454560_1456255_+	phosphoenolpyruvate--protein phosphotransferase	NA	NA	NA	NA	NA
WP_169507376.1|1456377_1456578_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930394.1|1457242_1458193_+	ornithine cyclodeaminase family protein	NA	NA	NA	NA	NA
WP_010930395.1|1458234_1459395_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930396.1|1459555_1460476_+	ectoine/hydroxyectoine ABC transporter substrate-binding protein EhuB	NA	NA	NA	NA	NA
WP_003812581.1|1460488_1461130_+	ectoine/hydroxyectoine ABC transporter permease subunit EhuC	NA	NA	NA	NA	NA
WP_010930397.1|1461126_1461798_+	ectoine/hydroxyectoine ABC transporter permease subunit EhuD	NA	NA	NA	NA	NA
WP_003812577.1|1461794_1462565_+	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	39.5	8.3e-29
WP_010929591.1|1462663_1463614_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 15
NZ_CP010263	Bordetella pertussis strain I646 chromosome, complete genome	4105348	1489902	1557988	4105348	transposase,tRNA	Streptococcus_virus(11.11%)	59	NA	NA
WP_010930416.1|1489902_1490391_+|tRNA	Cys-tRNA(Pro) deacylase	tRNA	NA	NA	NA	NA
WP_019248504.1|1490508_1491087_+	DJ-1/PfpI family protein	NA	NA	NA	NA	NA
WP_010930418.1|1491192_1491561_+	ribbon-helix-helix domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|1491659_1492610_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994932.1|1492616_1493729_-	D-alanyl-D-alanine endopeptidase	NA	NA	NA	NA	NA
WP_010930419.1|1494415_1495618_+	MFS transporter	NA	NA	NA	NA	NA
WP_004568212.1|1495653_1495800_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930420.1|1495821_1498482_+	PD-(D/E)XK nuclease family protein	NA	NA	NA	NA	NA
WP_010930421.1|1498494_1501899_+	UvrD-helicase domain-containing protein	NA	NA	NA	NA	NA
WP_023995689.1|1502566_1504792_+	DNA polymerase III subunit gamma/tau	NA	A0A1U9WR94	Streptococcus_virus	38.5	1.2e-43
WP_010930423.1|1504838_1505165_+	YbaB/EbfC family nucleoid-associated protein	NA	NA	NA	NA	NA
WP_010930424.1|1505215_1505824_+	recombination protein RecR	NA	NA	NA	NA	NA
WP_005013747.1|1505922_1506873_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930425.1|1506942_1507707_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930426.1|1507703_1508303_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930427.1|1508406_1509258_-	neutral zinc metallopeptidase	NA	A0A1I9SA48	Rhodococcus_phage	35.3	7.0e-37
WP_010928449.1|1509317_1509944_+	threonylcarbamoyl-AMP synthase	NA	NA	NA	NA	NA
WP_005012067.1|1509940_1510891_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019249265.1|1510989_1512102_-	DUF1513 domain-containing protein	NA	NA	NA	NA	NA
WP_019248041.1|1512091_1513093_-	imelysin family protein	NA	NA	NA	NA	NA
WP_019247498.1|1513198_1514710_-	c-type cytochrome	NA	NA	NA	NA	NA
WP_023853587.1|1514706_1516011_-	imelysin	NA	NA	NA	NA	NA
WP_010930431.1|1516122_1516683_-	membrane protein	NA	NA	NA	NA	NA
WP_010930432.1|1516950_1517505_+	NAD(P)H-dependent oxidoreductase	NA	A0A2P0ZL82	Lactobacillus_phage	32.0	1.7e-15
WP_010930433.1|1517960_1518176_-	dodecin domain-containing protein	NA	NA	NA	NA	NA
WP_033446228.1|1518430_1521028_+	DNA mismatch repair protein MutS	NA	A0A1V0SDQ0	Indivirus	22.6	1.5e-21
WP_010930435.1|1521024_1522212_+	cupin domain-containing protein	NA	NA	NA	NA	NA
WP_010930436.1|1522870_1523485_+	serotype 3 fimbrial subunit	NA	NA	NA	NA	NA
WP_010930437.1|1523573_1524701_-	outer membrane protein assembly factor BamC	NA	NA	NA	NA	NA
WP_033446216.1|1524712_1525618_-	4-hydroxy-tetrahydrodipicolinate synthase	NA	NA	NA	NA	NA
WP_005012067.1|1526510_1527461_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930439.1|1527642_1528395_+	glutamine ABC transporter substrate-binding protein GlnH	NA	NA	NA	NA	NA
WP_003811112.1|1528463_1529123_+	glutamine ABC transporter permease GlnP	NA	NA	NA	NA	NA
WP_003811113.1|1529119_1529848_+	glutamine ABC transporter ATP-binding protein GlnQ	NA	G9BWD6	Planktothrix_phage	39.3	3.3e-35
WP_010930440.1|1529860_1532140_-	bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase	NA	A0A1B1IUF0	uncultured_Mediterranean_phage	32.1	5.9e-06
WP_010930441.1|1532164_1532368_-	DNA-directed RNA polymerase subunit omega	NA	NA	NA	NA	NA
WP_010930442.1|1532409_1533042_-	guanylate kinase	NA	A0A218KC48	Bacillus_phage	33.9	2.4e-13
WP_010930443.1|1533177_1534095_-	c-type cytochrome	NA	NA	NA	NA	NA
WP_010930444.1|1534091_1534805_-	c-type cytochrome	NA	NA	NA	NA	NA
WP_003811135.1|1535042_1535813_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_003811137.1|1535817_1536417_-	C40 family peptidase	NA	A0A0A8WF62	Clostridium_phage	41.6	1.4e-20
WP_003811138.1|1536661_1538152_+	AMP nucleosidase	NA	NA	NA	NA	NA
WP_010926696.1|1538210_1538495_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010930445.1|1538632_1538788_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003811148.1|1539060_1539987_-	YicC family protein	NA	NA	NA	NA	NA
WP_003811149.1|1540123_1540864_+	ribonuclease PH	NA	NA	NA	NA	NA
WP_010930446.1|1541030_1542407_-	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_003811152.1|1542588_1543494_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930448.1|1545145_1546948_-	EAL domain-containing protein	NA	NA	NA	NA	NA
WP_010930449.1|1547074_1547716_+	RdgB/HAM1 family non-canonical purine NTP pyrophosphatase	NA	NA	NA	NA	NA
WP_005012808.1|1547814_1548765_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930450.1|1548786_1550007_+	oxygen-independent coproporphyrinogen III oxidase-like protein	NA	NA	NA	NA	NA
WP_003811164.1|1550192_1551605_+	type I glutamate--ammonia ligase	NA	NA	NA	NA	NA
WP_003811167.1|1551668_1552736_+	PAS domain-containing protein	NA	Q8QKV7	Ectocarpus_siliculosus_virus	23.5	1.1e-05
WP_010930451.1|1552735_1554223_+	nitrogen regulation protein NR(I)	NA	NA	NA	NA	NA
WP_010930452.1|1554232_1555177_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811176.1|1555336_1556035_+	pirin family protein	NA	NA	NA	NA	NA
WP_010930453.1|1556112_1557018_+	pirin family protein	NA	NA	NA	NA	NA
WP_005012067.1|1557037_1557988_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 16
NZ_CP010263	Bordetella pertussis strain I646 chromosome, complete genome	4105348	1593937	1649528	4105348	transposase	Brazilian_cedratvirus(25.0%)	47	NA	NA
WP_005013747.1|1593937_1594888_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930486.1|1594946_1595720_+	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_014486074.1|1595712_1597269_+	LTA synthase family protein	NA	NA	NA	NA	NA
WP_005013747.1|1597265_1598216_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003810741.1|1599542_1600145_-	TetR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003810743.1|1600384_1601086_-	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
WP_003816696.1|1601079_1601862_-	ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	25.8	2.0e-09
WP_005012808.1|1602046_1602997_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930483.1|1603095_1603833_-	TerC family protein	NA	A0A0S4KZH7	Pseudomonas_phage	46.6	4.1e-41
WP_010926609.1|1604022_1604781_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930482.1|1604827_1605817_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930481.1|1605994_1606963_-	transporter	NA	NA	NA	NA	NA
WP_010930480.1|1608502_1609471_+	AAA family ATPase	NA	NA	NA	NA	NA
WP_010930479.1|1609479_1610421_+	DUF58 domain-containing protein	NA	NA	NA	NA	NA
WP_010930478.1|1610894_1611905_+	VWA domain-containing protein	NA	NA	NA	NA	NA
WP_010930477.1|1611895_1613410_+	VWA domain-containing protein	NA	NA	NA	NA	NA
WP_010930476.1|1613406_1614753_+	BatD family protein	NA	NA	NA	NA	NA
WP_010930475.1|1614755_1615790_+	haloacid dehalogenase-like hydrolase	NA	NA	NA	NA	NA
WP_023852967.1|1615839_1617465_+	arylsulfatase	NA	A0A2P0VMN7	Tetraselmis_virus	52.2	2.0e-149
WP_005012067.1|1618017_1618968_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930487.1|1619072_1620020_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247865.1|1620073_1621888_-	sensor histidine kinase	NA	NA	NA	NA	NA
WP_010930489.1|1621880_1622555_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_023995112.1|1622684_1625759_+	autotransporter SphB2	NA	NA	NA	NA	NA
WP_019247905.1|1625772_1626072_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010930492.1|1626386_1627010_-	glutathione S-transferase family protein	NA	NA	NA	NA	NA
WP_010930493.1|1627253_1628123_+	TauD/TfdA family dioxygenase	NA	NA	NA	NA	NA
WP_010930494.1|1628100_1629045_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247909.1|1629130_1630057_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019247910.1|1630169_1630949_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930497.1|1630939_1632136_-	alpha-hydroxy-acid oxidizing protein	NA	NA	NA	NA	NA
WP_010930498.1|1632166_1633117_-	fumarylacetoacetate hydrolase family protein	NA	NA	NA	NA	NA
WP_010930499.1|1633338_1634028_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930500.1|1634092_1634848_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930501.1|1634899_1635892_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930502.1|1635901_1636855_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811538.1|1636970_1637933_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019249376.1|1639334_1639763_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|1639759_1640710_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_170954298.1|1641003_1641741_-	arsenical resistance protein ArsH	NA	A0A2H4J5V6	uncultured_Caudovirales_phage	68.2	1.3e-87
WP_010930504.1|1642164_1643352_-	MFS transporter	NA	NA	NA	NA	NA
WP_019249653.1|1643355_1643736_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010930506.1|1645455_1646427_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930507.1|1646440_1647154_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930508.1|1647158_1648076_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811452.1|1648182_1648479_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929588.1|1648577_1649528_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 17
NZ_CP010263	Bordetella pertussis strain I646 chromosome, complete genome	4105348	1882292	2013885	4105348	transposase,tRNA	uncultured_Caudovirales_phage(16.67%)	112	NA	NA
WP_003818515.1|1882292_1884950_-|tRNA	leucine--tRNA ligase	tRNA	A0A2H4PQS0	Staphylococcus_phage	39.0	3.3e-173
WP_010930709.1|1885027_1886230_-	MFS transporter	NA	NA	NA	NA	NA
WP_003810260.1|1886226_1886739_-	MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247822.1|1886861_1887299_-	HU family DNA-binding protein	NA	NA	NA	NA	NA
WP_010931070.1|1887575_1888526_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930710.1|1888779_1890585_+	STAS domain-containing protein	NA	A0A2H4J153	uncultured_Caudovirales_phage	27.5	2.2e-19
WP_010930711.1|1890698_1890866_-	50S ribosomal protein L33	NA	NA	NA	NA	NA
WP_003810297.1|1890929_1891166_-	50S ribosomal protein L28	NA	NA	NA	NA	NA
WP_010930712.1|1891534_1892734_-	multidrug effflux MFS transporter	NA	NA	NA	NA	NA
WP_005012067.1|1894249_1895200_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929591.1|1895298_1896249_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003818523.1|1896700_1897702_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003810306.1|1897874_1898732_+	proline/glycine betaine ABC transporter permease	NA	NA	NA	NA	NA
WP_003810308.1|1898728_1899991_+	glycine betaine/L-proline ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	36.6	6.8e-28
WP_003818524.1|1900091_1900466_+	tautomerase family protein	NA	NA	NA	NA	NA
WP_010930713.1|1900538_1901726_+	acetyl-CoA C-acyltransferase family protein	NA	NA	NA	NA	NA
WP_010930714.1|1901810_1902581_+	spermidine synthase	NA	NA	NA	NA	NA
WP_010930715.1|1902694_1903459_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930716.1|1903409_1904711_+	malonyl-CoA decarboxylase family protein	NA	NA	NA	NA	NA
WP_010930717.1|1904707_1905514_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003818532.1|1907258_1908230_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003818533.1|1908386_1908899_+	superoxide dismutase family protein	NA	Q9MC02	Salmonella_phage	52.3	1.8e-43
WP_010930718.1|1909057_1910032_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930719.1|1911032_1911827_+	ABC transporter ATP-binding protein	NA	A0A1V0SE00	Indivirus	25.7	5.1e-05
WP_003818535.1|1911852_1912659_-	TOBE domain-containing protein	NA	NA	NA	NA	NA
WP_003810329.1|1912769_1913360_+	DUF4136 domain-containing protein	NA	NA	NA	NA	NA
WP_010930720.1|1913370_1914549_+	patatin-like phospholipase family protein	NA	NA	NA	NA	NA
WP_010930721.1|1914651_1915026_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_019248531.1|1915278_1916610_+	efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
WP_019247651.1|1916676_1919907_+	multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_003810344.1|1921397_1922144_+	pyridoxine 5'-phosphate synthase	NA	NA	NA	NA	NA
WP_010930724.1|1922228_1922690_+	holo-ACP synthase	NA	NA	NA	NA	NA
WP_010930725.1|1922727_1923786_+	beta-N-acetylhexosaminidase	NA	NA	NA	NA	NA
WP_010930726.1|1923748_1925578_+	excinuclease ABC subunit UvrC	NA	NA	NA	NA	NA
WP_003810356.1|1925617_1926190_+	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	NA	NA	NA	NA	NA
WP_010930727.1|1927614_1928436_-	NADPH-dependent 7-cyano-7-deazaguanine reductase QueF	NA	A0A2I7SAX1	Vibrio_phage	37.6	4.1e-42
WP_010930728.1|1928754_1930077_+	isocitrate lyase	NA	NA	NA	NA	NA
WP_010930729.1|1930436_1931072_+	membrane protein	NA	NA	NA	NA	NA
WP_010930730.1|1931031_1931982_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930731.1|1932852_1933725_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010930732.1|1933802_1934942_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930733.1|1935300_1936557_+	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA	NA
WP_003816691.1|1936562_1937090_+	aromatic-ring-hydroxylating dioxygenase subunit beta	NA	NA	NA	NA	NA
WP_003816690.1|1937094_1937913_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003816687.1|1937912_1938635_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930735.1|1938656_1938971_+	2Fe-2S iron-sulfur cluster binding domain-containing protein	NA	NA	NA	NA	NA
WP_010930736.1|1938988_1940137_+	CoA transferase	NA	NA	NA	NA	NA
WP_010930737.1|1940167_1941043_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003816680.1|1941039_1942359_-	AMP-binding protein	NA	NA	NA	NA	NA
WP_014486081.1|1942431_1943628_-	acetyl-CoA acetyltransferase	NA	NA	NA	NA	NA
WP_010930739.1|1943638_1945126_-	hydroxymethylglutaryl-CoA synthase family protein	NA	NA	NA	NA	NA
WP_010930740.1|1947720_1948620_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_023852887.1|1948757_1949723_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_005015810.1|1949821_1950772_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005015810.1|1950870_1951821_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|1952042_1952993_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812024.1|1952989_1953292_-	SelT/SelW/SelH family protein	NA	NA	NA	NA	NA
WP_003812026.1|1953451_1953856_+	group III truncated hemoglobin	NA	NA	NA	NA	NA
WP_010930743.1|1953848_1955075_+	NnrS family protein	NA	NA	NA	NA	NA
WP_003812030.1|1955071_1955518_+	membrane protein	NA	NA	NA	NA	NA
WP_003812032.1|1955587_1956370_+	exodeoxyribonuclease III	NA	NA	NA	NA	NA
WP_010930744.1|1956411_1957917_+	M81 family metallopeptidase	NA	NA	NA	NA	NA
WP_019247851.1|1958202_1959036_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930745.1|1960473_1961295_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_010930746.1|1961313_1962168_-	polysaccharide deacetylase	NA	NA	NA	NA	NA
WP_003812044.1|1962171_1963143_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019247855.1|1963827_1964004_+	winged helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_005013747.1|1964489_1965440_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812172.1|1966577_1966874_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247707.1|1967048_1968401_+	glutathione-disulfide reductase	NA	A0A2K5B2C5	Erysipelothrix_phage	27.6	2.9e-45
WP_010930153.1|1968543_1969560_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010930748.1|1971539_1972553_-	pyridoxamine 5'-phosphate oxidase family protein	NA	NA	NA	NA	NA
WP_010930749.1|1972639_1973545_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003812179.1|1973701_1974046_+	exported protein	NA	NA	NA	NA	NA
WP_010930750.1|1974203_1974662_+	(2Fe-2S)-binding protein	NA	NA	NA	NA	NA
WP_010930751.1|1974675_1976892_+	xanthine dehydrogenase family protein molybdopterin-binding subunit	NA	NA	NA	NA	NA
WP_003812183.1|1976888_1977950_+	XdhC family protein	NA	NA	NA	NA	NA
WP_010930752.1|1977978_1978953_+	AraC family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930753.1|1978904_1979723_-	hypothetical protein	NA	A0A1B1INV8	uncultured_Mediterranean_phage	28.8	2.3e-16
WP_003812191.1|1979735_1980344_-	LON peptidase substrate-binding domain-containing protein	NA	NA	NA	NA	NA
WP_010930754.1|1980518_1980914_+	VOC family protein	NA	NA	NA	NA	NA
WP_010930755.1|1980932_1982372_+	MFS transporter	NA	A0A0M3UL24	Mycobacterium_phage	37.4	7.4e-55
WP_003812199.1|1982400_1982748_+	GFA family protein	NA	NA	NA	NA	NA
WP_010929577.1|1982766_1983717_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|1984369_1985320_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023997035.1|1985403_1987221_+	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	27.4	2.3e-37
WP_019247659.1|1987294_1987942_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930758.1|1987954_1988884_-	ZIP family metal transporter	NA	NA	NA	NA	NA
WP_014905663.1|1989053_1989518_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003816977.1|1989765_1990446_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003816975.1|1990494_1992186_+	STAS domain-containing protein	NA	A0A2H4J153	uncultured_Caudovirales_phage	27.3	5.0e-42
WP_010930760.1|1992201_1992753_-	SRPBCC family protein	NA	NA	NA	NA	NA
WP_003816971.1|1992749_1993121_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010930761.1|1993233_1994070_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_029443822.1|1994080_1994605_-	DUF302 domain-containing protein	NA	NA	NA	NA	NA
WP_003812228.1|1994702_1994882_+	DUF3008 family protein	NA	NA	NA	NA	NA
WP_010930763.1|1995011_1995986_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003816964.1|1996116_1996473_+	DUF1428 domain-containing protein	NA	NA	NA	NA	NA
WP_010930764.1|1996462_1997338_-	PhzF family phenazine biosynthesis protein	NA	NA	NA	NA	NA
WP_010930765.1|1997436_1998321_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930766.1|1998342_1999638_-	DUF445 domain-containing protein	NA	NA	NA	NA	NA
WP_003816959.1|2000586_2001237_+	NAD(P)H-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010930767.1|2001324_2002845_-	aldehyde dehydrogenase	NA	NA	NA	NA	NA
WP_010930768.1|2003102_2004968_+	sigma-54-dependent Fis family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|2006013_2006964_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_162268681.1|2006981_2007122_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930769.1|2007936_2008296_-	CidA/LrgA family protein	NA	NA	NA	NA	NA
WP_010930770.1|2008283_2009720_-	dethiobiotin synthase	NA	NA	NA	NA	NA
WP_010930771.1|2009716_2010370_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_010930772.1|2010366_2011560_-	8-amino-7-oxononanoate synthase	NA	NA	NA	NA	NA
WP_010930773.1|2011663_2012938_+	adenosylmethionine--8-amino-7-oxononanoate transaminase	NA	A0A1V0SKB7	Klosneuvirus	28.9	9.6e-14
WP_005012067.1|2012934_2013885_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 18
NZ_CP010263	Bordetella pertussis strain I646 chromosome, complete genome	4105348	2025089	2065780	4105348	protease,transposase,tRNA	Klosneuvirus(25.0%)	37	NA	NA
WP_005013747.1|2025089_2026040_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|2026138_2027089_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_047122784.1|2027048_2027462_-	transcriptional regulator	NA	A0A222YXG1	Escherichia_phage	59.0	3.8e-36
WP_003816708.1|2027746_2028046_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930783.1|2028455_2030738_-	RNA polymerase sigma factor RpoD	NA	A0A2I7SAT0	Vibrio_phage	30.1	3.2e-36
WP_124740709.1|2031203_2031398_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930784.1|2031423_2033454_-	DNA primase	NA	A0A0K1LMQ9	Caulobacter_phage	41.9	1.0e-65
WP_006218592.1|2033473_2033686_-	30S ribosomal protein S21	NA	NA	NA	NA	NA
WP_003810720.1|2033963_2034503_-	phosphoribosyltransferase	NA	NA	NA	NA	NA
WP_023852902.1|2034616_2035912_-	adenylosuccinate synthase	NA	A0A160ER07	Powai_lake_megavirus	33.5	3.0e-63
WP_010930786.1|2035988_2037146_-	ATP phosphoribosyltransferase regulatory subunit	NA	NA	NA	NA	NA
WP_010930787.1|2037329_2038229_-|protease	protease modulator HflC	protease	NA	NA	NA	NA
WP_010930788.1|2038247_2039552_-|protease	FtsH protease activity modulator HflK	protease	NA	NA	NA	NA
WP_010930789.1|2039517_2040624_-	GTPase HflX	NA	NA	NA	NA	NA
WP_003810707.1|2040711_2040948_-	RNA chaperone Hfq	NA	NA	NA	NA	NA
WP_010930790.1|2041086_2042157_-	histidinol-phosphate transaminase	NA	A0A1X6WGT4	Pacmanvirus	25.7	2.5e-15
WP_003810703.1|2042160_2043516_-	ribosome biogenesis GTPase Der	NA	NA	NA	NA	NA
WP_003810701.1|2043542_2044703_-	outer membrane protein assembly factor BamB	NA	NA	NA	NA	NA
WP_010930791.1|2044705_2045344_-	tetratricopeptide repeat protein	NA	NA	NA	NA	NA
WP_023995843.1|2045345_2046632_-|tRNA	histidine--tRNA ligase	tRNA	NA	NA	NA	NA
WP_010930793.1|2046690_2047986_-	flavodoxin-dependent (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase	NA	NA	NA	NA	NA
WP_003810693.1|2047992_2048499_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_004568542.1|2048495_2049644_-	23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN	NA	NA	NA	NA	NA
WP_003810689.1|2049671_2050097_-	nucleoside-diphosphate kinase	NA	D2E8E1	Anguillid_herpesvirus	43.2	2.1e-21
WP_010930794.1|2050419_2053302_+|tRNA	valine--tRNA ligase	tRNA	A0A1V0SK04	Klosneuvirus	37.1	3.7e-138
WP_023852900.1|2053394_2054150_-	MipA/OmpV family protein	NA	NA	NA	NA	NA
WP_010930796.1|2054915_2056265_+	two-component sensor histidine kinase	NA	NA	NA	NA	NA
WP_076879566.1|2056363_2057314_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930048.1|2057412_2058363_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930594.1|2058436_2058910_+	RidA family protein	NA	NA	NA	NA	NA
WP_010930593.1|2058935_2060144_+	aminotransferase class V-fold PLP-dependent enzyme	NA	NA	NA	NA	NA
WP_003816734.1|2060140_2060914_-|tRNA	tRNA (guanosine(37)-N1)-methyltransferase TrmD	tRNA	NA	NA	NA	NA
WP_014905757.1|2060913_2061537_-	ribosome maturation factor RimM	NA	NA	NA	NA	NA
WP_010926757.1|2061702_2061963_-	30S ribosomal protein S16	NA	NA	NA	NA	NA
WP_010930591.1|2062266_2062848_+	hypothetical protein	NA	NA	NA	NA	NA
WP_004568544.1|2062914_2063169_-	sulfurtransferase TusA family protein	NA	NA	NA	NA	NA
WP_010930590.1|2063155_2065780_-|tRNA	alanine--tRNA ligase	tRNA	A0A1V0SK38	Klosneuvirus	39.4	1.7e-81
>prophage 19
NZ_CP010263	Bordetella pertussis strain I646 chromosome, complete genome	4105348	2093563	2159112	4105348	protease,transposase,tRNA	Lake_Baikal_phage(20.0%)	58	NA	NA
WP_010929577.1|2093563_2094514_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930573.1|2094714_2095524_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_005013747.1|2095648_2096599_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930572.1|2096595_2097489_-	methylglyoxal synthase	NA	NA	NA	NA	NA
WP_003812452.1|2097613_2097808_-	Fe-S cluster assembly protein IscX	NA	NA	NA	NA	NA
WP_003812453.1|2097807_2098149_-	ISC system 2Fe-2S type ferredoxin	NA	NA	NA	NA	NA
WP_010930571.1|2098158_2100021_-	Fe-S protein assembly chaperone HscA	NA	A0A0N9QXN8	Chrysochromulina_ericina_virus	42.4	3.0e-101
WP_003812456.1|2100150_2100663_-	Fe-S protein assembly co-chaperone HscB	NA	NA	NA	NA	NA
WP_003812458.1|2100665_2100989_-	iron-sulfur cluster assembly protein IscA	NA	A0A2H4N7N5	Lake_Baikal_phage	52.8	6.8e-25
WP_003812460.1|2100990_2101401_-	Fe-S cluster assembly scaffold IscU	NA	A0A218MKD1	uncultured_virus	79.0	7.5e-53
WP_010930570.1|2101438_2102650_-	IscS subfamily cysteine desulfurase	NA	NA	NA	NA	NA
WP_003812463.1|2102667_2103180_-	Fe-S cluster assembly transcriptional regulator IscR	NA	NA	NA	NA	NA
WP_010930569.1|2103395_2103887_-	low molecular weight phosphotyrosine protein phosphatase	NA	NA	NA	NA	NA
WP_010930568.1|2104139_2106176_-	excinuclease ABC subunit UvrB	NA	NA	NA	NA	NA
WP_019247244.1|2106253_2107456_+	aspartate/tyrosine/aromatic aminotransferase	NA	NA	NA	NA	NA
WP_010930566.1|2107584_2108235_+	transcriptional repressor LexA	NA	A0A2H4JG58	uncultured_Caudovirales_phage	50.7	3.3e-10
WP_005012067.1|2109792_2110743_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247934.1|2111313_2111526_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247935.1|2111543_2112275_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003812478.1|2112309_2112951_-	CoA transferase subunit B	NA	NA	NA	NA	NA
WP_010930565.1|2112943_2113612_-	3-oxoacid CoA-transferase subunit A	NA	NA	NA	NA	NA
WP_010930564.1|2115824_2116601_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930563.1|2116622_2117780_-	thiolase	NA	NA	NA	NA	NA
WP_003812491.1|2117776_2118208_-	OB-fold domain-containing protein	NA	NA	NA	NA	NA
WP_015063637.1|2118204_2119008_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010930561.1|2119021_2119423_-	MaoC family dehydratase	NA	NA	NA	NA	NA
WP_010930560.1|2119489_2120461_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930559.1|2120526_2121750_-	CoA transferase	NA	NA	NA	NA	NA
WP_019247936.1|2121977_2122928_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930557.1|2123051_2125505_-	endopeptidase La	NA	A0A0R6PGP8	Moraxella_phage	52.0	1.5e-220
WP_010930556.1|2125693_2126998_-|protease	ATP-dependent Clp protease ATP-binding subunit ClpX	protease	G3M9Z9	Bacillus_virus	53.8	3.2e-129
WP_003812508.1|2127102_2127756_-	ATP-dependent Clp endopeptidase proteolytic subunit ClpP	NA	A0A223W000	Agrobacterium_phage	57.5	6.8e-56
WP_010930555.1|2127758_2129069_-	trigger factor	NA	NA	NA	NA	NA
WP_010930554.1|2129265_2129826_+	TIGR00645 family protein	NA	K4K6D8	Caulobacter_phage	33.7	1.0e-23
WP_010930553.1|2129937_2130138_-	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	64.4	7.4e-14
WP_003812519.1|2130483_2131050_-	DUF924 family protein	NA	NA	NA	NA	NA
WP_010930551.1|2131133_2131337_-	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	62.1	1.6e-16
WP_003812524.1|2131643_2131964_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003812526.1|2132005_2132287_-	membrane protein	NA	NA	NA	NA	NA
WP_010930550.1|2132361_2133618_-	autotransporter Phg	NA	NA	NA	NA	NA
WP_010930549.1|2134000_2134330_+	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
WP_003812536.1|2135900_2136722_+	2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase	NA	NA	NA	NA	NA
WP_010930548.1|2136721_2137861_+	succinyl-diaminopimelate desuccinylase	NA	NA	NA	NA	NA
WP_019247938.1|2137867_2138764_+	50S ribosomal protein L3 N(5)-glutamine methyltransferase	NA	NA	NA	NA	NA
WP_010930546.1|2138760_2140686_+	ATP-binding cassette domain-containing protein	NA	A0A2K9L0W2	Tupanvirus	31.8	1.1e-66
WP_010926400.1|2141045_2143658_+	TonB-dependent receptor	NA	NA	NA	NA	NA
WP_003812546.1|2143710_2146011_-	UvrD-helicase domain-containing protein	NA	A7KV33	Bacillus_phage	35.9	9.9e-110
WP_003812548.1|2146007_2147216_-	fatty acid desaturase	NA	NA	NA	NA	NA
WP_010930545.1|2147477_2147852_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|2147848_2148799_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_076879626.1|2148897_2150892_-	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	33.3	4.4e-21
WP_010930543.1|2150951_2151917_+	bifunctional riboflavin kinase/FAD synthetase	NA	NA	NA	NA	NA
WP_010930542.1|2151906_2154768_+|tRNA	isoleucine--tRNA ligase	tRNA	A0A1V0SJ93	Klosneuvirus	25.5	1.0e-71
WP_010930541.1|2154770_2155277_+	lipoprotein signal peptidase	NA	NA	NA	NA	NA
WP_010930540.1|2155381_2156590_+	bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC	NA	Q9HH70	Methanothermobacter_phage	30.0	3.8e-36
WP_033446178.1|2156591_2157530_-	membrane protein	NA	NA	NA	NA	NA
WP_010930538.1|2157691_2158165_+	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012808.1|2158161_2159112_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 20
NZ_CP010263	Bordetella pertussis strain I646 chromosome, complete genome	4105348	2452759	2511003	4105348	transposase,tRNA	Planktothrix_phage(28.57%)	54	NA	NA
WP_005012067.1|2452759_2453710_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930388.1|2454189_2454846_-	phosphoribosylanthranilate isomerase	NA	NA	NA	NA	NA
WP_010930387.1|2454860_2456528_-	TRAP transporter large permease subunit	NA	NA	NA	NA	NA
WP_010930386.1|2456530_2457160_-	TRAP transporter small permease subunit	NA	NA	NA	NA	NA
WP_014486072.1|2457371_2458466_-	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930384.1|2458610_2459423_-|tRNA	tRNA pseudouridine(38-40) synthase TruA	tRNA	NA	NA	NA	NA
WP_023853502.1|2459426_2461130_-	FimV N-terminal domain protein	NA	NA	NA	NA	NA
WP_010930382.1|2461180_2462311_-	aspartate-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
WP_010930381.1|2462497_2463574_-	3-isopropylmalate dehydrogenase	NA	NA	NA	NA	NA
WP_010930380.1|2463655_2464306_-	3-isopropylmalate dehydratase small subunit	NA	NA	NA	NA	NA
WP_010930379.1|2464320_2465724_-	3-isopropylmalate dehydratase large subunit	NA	NA	NA	NA	NA
WP_004567445.1|2466007_2466826_-	substrate-binding domain-containing protein	NA	NA	NA	NA	NA
WP_010930378.1|2466822_2467527_-	phosphate ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.0	2.6e-13
WP_010930377.1|2468426_2469542_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_004567447.1|2469575_2469950_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930376.1|2469972_2471130_-	formate dehydrogenase subunit gamma	NA	NA	NA	NA	NA
WP_003812666.1|2471142_2471376_-	lipoprotein	NA	NA	NA	NA	NA
WP_019247523.1|2472010_2474980_-	formate dehydrogenase subunit alpha	NA	NA	NA	NA	NA
WP_023853518.1|2474994_2475204_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019248667.1|2475355_2475985_-	molecular chaperone TorD family protein	NA	NA	NA	NA	NA
WP_010930373.1|2475981_2478072_-	4Fe-4S binding protein	NA	NA	NA	NA	NA
WP_010930372.1|2478095_2478776_-	DUF3306 domain-containing protein	NA	NA	NA	NA	NA
WP_003820494.1|2478772_2479333_-	DUF3305 domain-containing protein	NA	NA	NA	NA	NA
WP_004567450.1|2479339_2480437_-	iron-sulfur cluster carrier protein ApbC	NA	NA	NA	NA	NA
WP_010930371.1|2480589_2481183_+	molybdenum cofactor guanylyltransferase MobA	NA	NA	NA	NA	NA
WP_010930370.1|2481179_2482472_+	molybdopterin molybdotransferase MoeA	NA	NA	NA	NA	NA
WP_003812685.1|2482485_2483028_+	molybdopterin-guanine dinucleotide biosynthesis protein B	NA	NA	NA	NA	NA
WP_010930369.1|2483037_2483874_-	M48 family metallopeptidase	NA	NA	NA	NA	NA
WP_003820487.1|2483907_2484969_-	chorismate synthase	NA	A0A291AU41	Pandoravirus	42.8	2.9e-80
WP_019247210.1|2485010_2486063_-	EAL domain-containing protein	NA	NA	NA	NA	NA
WP_019247209.1|2486078_2486381_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012808.1|2486522_2487473_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_162268680.1|2487490_2487655_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930368.1|2487651_2489346_+	iron ABC transporter permease	NA	NA	NA	NA	NA
WP_003809599.1|2489342_2490428_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	37.7	6.4e-27
WP_010930367.1|2490475_2491375_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003809593.1|2491385_2492030_+	histidine phosphatase family protein	NA	NA	NA	NA	NA
WP_010930366.1|2493051_2496294_-	carbamoyl-phosphate synthase large subunit	NA	NA	NA	NA	NA
WP_023852833.1|2496304_2497459_-	glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit	NA	R4TGJ8	Halovirus	35.4	3.3e-53
WP_010930364.1|2497685_2498648_+	transaldolase	NA	H6WFR1	Cyanophage	29.2	7.5e-11
WP_076879624.1|2498746_2499697_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930363.1|2499795_2500746_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930362.1|2500755_2501445_-	VIT family protein	NA	NA	NA	NA	NA
WP_003811741.1|2501504_2501942_-	PaaI family thioesterase	NA	NA	NA	NA	NA
WP_003811743.1|2501987_2502881_-	3-hydroxyisobutyrate dehydrogenase	NA	NA	NA	NA	NA
WP_003811746.1|2502928_2504101_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003811748.1|2504097_2505252_-	acyl-CoA dehydrogenase family protein	NA	NA	NA	NA	NA
WP_003811750.1|2505448_2505799_-	RnfH family protein	NA	NA	NA	NA	NA
WP_003811752.1|2505788_2506223_-	type II toxin-antitoxin system RatA family toxin	NA	NA	NA	NA	NA
WP_010930800.1|2506239_2507190_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811754.1|2507337_2507805_+	SsrA-binding protein SmpB	NA	W5RAM5	Staphylococcus_phage	45.1	6.2e-27
WP_010930360.1|2507785_2508943_-	GGDEF domain-containing protein	NA	A0A127AWB9	Bacillus_phage	36.2	2.3e-14
WP_003811759.1|2509008_2509935_-	paraslipin	NA	NA	NA	NA	NA
WP_005012067.1|2510052_2511003_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 21
NZ_CP010263	Bordetella pertussis strain I646 chromosome, complete genome	4105348	2553283	2607340	4105348	transposase	uncultured_Caudovirales_phage(28.57%)	48	NA	NA
WP_005012067.1|2553283_2554234_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811850.1|2554603_2555176_+	flagellar basal body-associated protein FliL	NA	NA	NA	NA	NA
WP_003811852.1|2555178_2556189_+	flagellar motor switch protein FliM	NA	NA	NA	NA	NA
WP_010930335.1|2556181_2556682_+	flagellar motor switch protein FliN	NA	NA	NA	NA	NA
WP_003811855.1|2556692_2557034_+	flagellar biosynthetic protein FliO	NA	NA	NA	NA	NA
WP_015041547.1|2557045_2557837_+	flagellar type III secretion system pore protein FliP	NA	NA	NA	NA	NA
WP_003811859.1|2557853_2558123_+	flagellar biosynthesis protein FliQ	NA	NA	NA	NA	NA
WP_010930333.1|2558145_2558934_+	flagellar biosynthetic protein FliR	NA	NA	NA	NA	NA
WP_010929632.1|2558980_2559997_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_014486070.1|2560213_2561656_-	PAS domain-containing protein	NA	A0A1B0V854	Salmonella_phage	41.8	1.0e-35
WP_010930332.1|2561834_2563454_-	Tar ligand binding domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	45.3	1.5e-08
WP_010930331.1|2563574_2565395_-	Tar ligand binding domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	52.6	6.4e-11
WP_010930330.1|2565473_2567006_-	flagellar hook-associated protein FlgL	NA	NA	NA	NA	NA
WP_010930329.1|2567039_2568686_-	flagellar hook-associated protein FlgK	NA	NA	NA	NA	NA
WP_010930328.1|2568755_2569778_-	flagellar assembly peptidoglycan hydrolase FlgJ	NA	A0A088F6W1	Sulfitobacter_phage	31.4	1.9e-12
WP_010930327.1|2569795_2570929_-	flagellar basal body P-ring protein FlgI	NA	NA	NA	NA	NA
WP_010930326.1|2570931_2571621_-	flagellar basal body L-ring protein FlgH	NA	NA	NA	NA	NA
WP_010930325.1|2571620_2572406_-	flagellar basal-body rod protein FlgG	NA	NA	NA	NA	NA
WP_003817181.1|2572449_2573214_-	flagellar basal body rod protein FlgF	NA	NA	NA	NA	NA
WP_003817180.1|2573252_2574674_-	flagellar hook-basal body complex protein	NA	NA	NA	NA	NA
WP_010930324.1|2574739_2575444_-	flagellar basal body rod modification protein FlgD	NA	NA	NA	NA	NA
WP_003817176.1|2575491_2575911_-	flagellar basal body rod protein FlgC	NA	NA	NA	NA	NA
WP_010930323.1|2575923_2576331_-	flagellar basal body rod protein FlgB	NA	NA	NA	NA	NA
WP_010930322.1|2576514_2577225_+	flagellar basal body P-ring formation protein FlgA	NA	NA	NA	NA	NA
WP_003817172.1|2577351_2577642_+	flagellar biosynthesis anti-sigma factor FlgM	NA	NA	NA	NA	NA
WP_003817170.1|2577659_2578142_+	flagellar protein FlgN	NA	NA	NA	NA	NA
WP_010930321.1|2582647_2583802_-	flagellar type III secretion system protein FlhB	NA	NA	NA	NA	NA
WP_010931363.1|2584107_2585124_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010930319.1|2585370_2586159_+	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003812020.1|2586225_2586906_+	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003812022.1|2586902_2587673_+	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	39.1	9.8e-30
WP_010929577.1|2587771_2588722_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814040.1|2588718_2590785_-	cation acetate symporter	NA	NA	NA	NA	NA
WP_003814042.1|2590784_2591057_-	DUF4212 domain-containing protein	NA	NA	NA	NA	NA
WP_017685545.1|2591751_2591841_+	K(+)-transporting ATPase subunit F	NA	NA	NA	NA	NA
WP_010930949.1|2591840_2593625_+	potassium-transporting ATPase subunit KdpA	NA	NA	NA	NA	NA
WP_010930950.1|2593648_2595814_+	potassium-transporting ATPase subunit KdpB	NA	M1HBF8	Paramecium_bursaria_Chlorella_virus	27.1	1.2e-24
WP_003814050.1|2595824_2596424_+	potassium-transporting ATPase subunit KdpC	NA	NA	NA	NA	NA
WP_003814052.1|2599245_2599941_+	two-component system response regulator KdpE	NA	NA	NA	NA	NA
WP_005013747.1|2599949_2600900_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005015028.1|2600998_2602240_-	O-antigen ligase family protein	NA	NA	NA	NA	NA
WP_003814057.1|2602389_2603370_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003814059.1|2603568_2604825_-	NADP-dependent isocitrate dehydrogenase	NA	Q77Z09	Phage_21	64.8	1.2e-11
WP_003814061.1|2605027_2605453_+	DUF1841 family protein	NA	NA	NA	NA	NA
WP_003814063.1|2605494_2605857_-	cytochrome c	NA	NA	NA	NA	NA
WP_003814065.1|2605869_2606223_-	cytochrome c	NA	NA	NA	NA	NA
WP_023999730.1|2606219_2606372_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|2606389_2607340_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 22
NZ_CP010263	Bordetella pertussis strain I646 chromosome, complete genome	4105348	2687017	2727686	4105348	transposase,tRNA	Salmonella_phage(33.33%)	42	NA	NA
WP_010929591.1|2687017_2687968_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_004567479.1|2688078_2688261_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931004.1|2688360_2688957_-	lipoprotein	NA	NA	NA	NA	NA
WP_010931005.1|2689140_2690232_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003812822.1|2690731_2691142_-	MerR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931006.1|2691200_2691542_-	integration host factor subunit alpha	NA	A0A0H3UZA0	Geobacillus_virus	42.2	2.8e-13
WP_010931007.1|2691547_2693965_-|tRNA	phenylalanine--tRNA ligase subunit beta	tRNA	NA	NA	NA	NA
WP_010926359.1|2693977_2695000_-|tRNA	phenylalanine--tRNA ligase subunit alpha	tRNA	A0A2H4UW22	Bodo_saltans_virus	38.6	1.0e-26
WP_003812832.1|2695074_2695434_-	50S ribosomal protein L20	NA	NA	NA	NA	NA
WP_003812834.1|2695449_2695647_-	50S ribosomal protein L35	NA	NA	NA	NA	NA
WP_010929584.1|2695982_2696933_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003816756.1|2697127_2697577_+	dUTP diphosphatase	NA	S4TNT3	Salmonella_phage	67.2	3.7e-45
WP_005012808.1|2697573_2698524_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931008.1|2698634_2700083_+	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
WP_010931009.1|2700197_2700479_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|2700582_2701533_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003820420.1|2701777_2702491_-	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_019247724.1|2702613_2702841_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_003816758.1|2703135_2703774_-	DedA family protein	NA	NA	NA	NA	NA
WP_010931011.1|2703882_2704917_+	metal-dependent hydrolase	NA	NA	NA	NA	NA
WP_010929591.1|2704913_2705864_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931012.1|2706279_2706804_-	DNA-binding protein	NA	J9Q7G7	Salmonella_phage	32.9	6.5e-09
WP_004567322.1|2706807_2707077_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931013.1|2707275_2708337_-	LacI family DNA-binding transcriptional regulator	NA	NA	NA	NA	NA
WP_010931014.1|2708420_2710055_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	31.1	2.9e-15
WP_010931015.1|2710056_2710860_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931016.1|2710888_2711848_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931017.1|2711851_2713366_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019248147.1|2713402_2714407_-	M20/M25/M40 family metallo-hydrolase	NA	NA	NA	NA	NA
WP_010931018.1|2714838_2715309_-	DUF1801 domain-containing protein	NA	NA	NA	NA	NA
WP_010931019.1|2715344_2715956_-	LysE family translocator	NA	NA	NA	NA	NA
WP_010931020.1|2715986_2716610_-	FMN-binding negative transcriptional regulator	NA	NA	NA	NA	NA
WP_010931021.1|2716690_2718223_+	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
WP_010931022.1|2718257_2719499_-	MFS transporter	NA	NA	NA	NA	NA
WP_010931023.1|2719542_2720574_-	alcohol dehydrogenase catalytic domain-containing protein	NA	A0A2K9L339	Tupanvirus	27.8	1.8e-26
WP_010931024.1|2720570_2721740_-	FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010931025.1|2721733_2722414_-	cupin domain-containing protein	NA	NA	NA	NA	NA
WP_010931026.1|2722575_2723418_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931027.1|2723580_2724552_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010931028.1|2724723_2725602_+	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
WP_010931029.1|2725624_2726695_-	FUSC family protein	NA	NA	NA	NA	NA
WP_005013747.1|2726735_2727686_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 23
NZ_CP010263	Bordetella pertussis strain I646 chromosome, complete genome	4105348	2783151	2856021	4105348	transposase,tRNA	Moraxella_phage(16.67%)	58	NA	NA
WP_003810909.1|2783151_2783568_-|tRNA	aminoacyl-tRNA hydrolase	tRNA	NA	NA	NA	NA
WP_010931061.1|2783678_2784311_+	7-carboxy-7-deazaguanine synthase	NA	NA	NA	NA	NA
WP_010931062.1|2784339_2784783_+	6-carboxytetrahydropterin synthase QueD	NA	NA	NA	NA	NA
WP_003810897.1|2784804_2785896_-	TRAP transporter substrate-binding protein DctP	NA	NA	NA	NA	NA
WP_010931063.1|2785950_2786751_-	aldolase	NA	NA	NA	NA	NA
WP_010931064.1|2786886_2787507_+	cupin domain-containing protein	NA	NA	NA	NA	NA
WP_010931065.1|2787646_2788120_+	MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|2789259_2790210_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931066.1|2790206_2797868_-	hemagglutinin repeat-containing protein	NA	A0A0R6PJK4	Moraxella_phage	30.9	7.3e-24
WP_010931067.1|2798108_2802155_-	phosphoribosylformylglycinamidine synthase	NA	A9YX36	Burkholderia_phage	67.4	6.3e-160
WP_003816847.1|2802467_2803049_+	TRAP transporter small permease	NA	NA	NA	NA	NA
WP_010931068.1|2803045_2804344_+	TRAP transporter large permease	NA	NA	NA	NA	NA
WP_010931069.1|2804423_2805452_+	DctP family TRAP transporter solute-binding subunit	NA	NA	NA	NA	NA
WP_005013747.1|2805712_2806663_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010927663.1|2806659_2807610_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931071.1|2807926_2808532_+	fimbrial major subunit FimX	NA	NA	NA	NA	NA
WP_010931072.1|2808585_2809899_-	phenylacetate--CoA ligase	NA	NA	NA	NA	NA
WP_003813284.1|2809973_2810444_-	hydroxyphenylacetyl-CoA thioesterase PaaI	NA	NA	NA	NA	NA
WP_010931073.1|2810443_2811232_-	2-(1,2-epoxy-1,2-dihydrophenyl)acetyl-CoA isomerase	NA	NA	NA	NA	NA
WP_010931074.1|2811242_2812895_-	phenylacetic acid degradation protein PaaN	NA	NA	NA	NA	NA
WP_005012067.1|2812982_2813933_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931075.1|2815094_2815601_-	phenylacetate-CoA oxygenase subunit PaaJ	NA	NA	NA	NA	NA
WP_003813293.1|2815597_2816362_-	phenylacetate-CoA oxygenase subunit PaaC	NA	NA	NA	NA	NA
WP_010931076.1|2816377_2816662_-	1,2-phenylacetyl-CoA epoxidase subunit B	NA	NA	NA	NA	NA
WP_003813298.1|2816726_2817716_-	1,2-phenylacetyl-CoA epoxidase subunit A	NA	NA	NA	NA	NA
WP_010931077.1|2817887_2818817_+	phenylacetic acid degradation operon negative regulatory protein PaaX	NA	NA	NA	NA	NA
WP_003813302.1|2818788_2819475_-	NAD(P)H-hydrate epimerase	NA	NA	NA	NA	NA
WP_003813303.1|2819508_2820054_-	oligoribonuclease	NA	Q8B5Y0	Diachasmimorpha_longicaudata_entomopoxvirus	37.7	2.1e-26
WP_003813306.1|2820098_2821364_+	M48 family metallopeptidase	NA	NA	NA	NA	NA
WP_003813309.1|2821360_2822263_+	ribosome small subunit-dependent GTPase A	NA	NA	NA	NA	NA
WP_019247679.1|2823444_2824389_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931079.1|2824483_2826001_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931080.1|2826042_2827671_-	gamma-glutamyltransferase	NA	NA	NA	NA	NA
WP_003811986.1|2827778_2828660_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931081.1|2831772_2832147_+	endonuclease	NA	F4YXR7	Roseobacter_phage	54.4	2.1e-25
WP_003812004.1|2832171_2832510_-	P-II family nitrogen regulator	NA	NA	NA	NA	NA
WP_010931082.1|2832553_2834188_-	NAD+ synthase	NA	A0A2L0UZF5	Agrobacterium_phage	36.6	8.3e-87
WP_010931083.1|2834226_2835573_-	mechanosensitive ion channel family protein	NA	NA	NA	NA	NA
WP_003812010.1|2835680_2837102_+	argininosuccinate lyase	NA	NA	NA	NA	NA
WP_010931084.1|2837171_2837756_-	nitroreductase	NA	NA	NA	NA	NA
WP_005012067.1|2837858_2838809_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931085.1|2838943_2840050_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010931086.1|2840060_2841158_+	GTP 3',8-cyclase MoaA	NA	NA	NA	NA	NA
WP_010931087.1|2841302_2842508_-	molybdopterin molybdotransferase MoeA	NA	NA	NA	NA	NA
WP_010931088.1|2842514_2843036_-	molybdenum cofactor biosynthesis protein B	NA	NA	NA	NA	NA
WP_010931089.1|2843032_2843524_-	molybdenum cofactor biosynthesis protein MoaE	NA	NA	NA	NA	NA
WP_003819740.1|2843520_2843772_-	MoaD/ThiS family protein	NA	NA	NA	NA	NA
WP_003819741.1|2843752_2844238_-	cyclic pyranopterin monophosphate synthase MoaC	NA	NA	NA	NA	NA
WP_010931090.1|2844373_2847835_+	DUF748 domain-containing protein	NA	NA	NA	NA	NA
WP_010931091.1|2847852_2848737_+	dienelactone hydrolase family protein	NA	NA	NA	NA	NA
WP_010931092.1|2848746_2849178_-	lipoprotein	NA	NA	NA	NA	NA
WP_003809348.1|2849424_2849928_+	peroxiredoxin	NA	M1I839	Pelagibacter_phage	44.1	1.8e-24
WP_010931094.1|2850005_2851406_+	MFS transporter	NA	NA	NA	NA	NA
WP_010931095.1|2851480_2852356_-	membrane protein	NA	NA	NA	NA	NA
WP_023853546.1|2852352_2853360_-	biotin synthase BioB	NA	NA	NA	NA	NA
WP_010931097.1|2853827_2854133_+	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
WP_003819753.1|2854223_2854814_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930525.1|2855004_2856021_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
>prophage 24
NZ_CP010263	Bordetella pertussis strain I646 chromosome, complete genome	4105348	2859164	2925975	4105348	protease,transposase	uncultured_Mediterranean_phage(28.57%)	50	NA	NA
WP_023995489.1|2859164_2860115_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|2860213_2861164_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931099.1|2861160_2861955_-	N-formylglutamate deformylase	NA	NA	NA	NA	NA
WP_010931100.1|2861986_2862691_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010931101.1|2862765_2863566_-	SURF1 family protein	NA	NA	NA	NA	NA
WP_003809276.1|2863562_2863970_-	cytochrome o ubiquinol oxidase subunit IV	NA	NA	NA	NA	NA
WP_003819722.1|2863966_2864608_-	cytochrome o ubiquinol oxidase subunit III	NA	NA	NA	NA	NA
WP_010931102.1|2864600_2866601_-	cytochrome o ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
WP_010931103.1|2867861_2869193_+	MFS transporter	NA	NA	NA	NA	NA
WP_005012067.1|2869189_2870140_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931105.1|2871846_2872113_-	accessory factor UbiK family protein	NA	NA	NA	NA	NA
WP_003812839.1|2872820_2873159_+	P-II family nitrogen regulator	NA	NA	NA	NA	NA
WP_010931107.1|2877712_2878315_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931108.1|2878411_2879701_+	MFS transporter	NA	NA	NA	NA	NA
WP_003812846.1|2879758_2880490_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	31.0	1.4e-12
WP_010931109.1|2880486_2881290_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	23.5	7.9e-14
WP_003812851.1|2881286_2882375_-	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
WP_003820410.1|2882371_2883301_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003812857.1|2883449_2884595_-	branched-chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930800.1|2884616_2885567_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_154698391.1|2885584_2885743_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931110.1|2885897_2889719_-	trifunctional transcriptional regulator/proline dehydrogenase/L-glutamate gamma-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
WP_010931111.1|2889875_2890544_-	membrane integrity-associated transporter subunit PqiC	NA	NA	NA	NA	NA
WP_014905522.1|2890548_2892222_-	MCE family protein	NA	NA	NA	NA	NA
WP_003820402.1|2892240_2893560_-	PqiA/YebS family transporter subunit	NA	NA	NA	NA	NA
WP_010931114.1|2893564_2895880_-|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	protease	A0A223W0B1	Agrobacterium_phage	41.9	4.1e-164
WP_010931115.1|2895935_2898104_-	penicillin-binding protein 1C	NA	NA	NA	NA	NA
WP_010931116.1|2898100_2903290_-	alpha-2-macroglobulin family protein	NA	NA	NA	NA	NA
WP_003820400.1|2903379_2903694_-|protease	ATP-dependent Clp protease adapter ClpS	protease	A0A1B1IT64	uncultured_Mediterranean_phage	43.8	1.2e-10
WP_003812875.1|2903921_2904167_+	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	76.6	1.3e-20
WP_003820399.1|2904261_2904780_+	DUF192 domain-containing protein	NA	A0A1B1IUW8	uncultured_Mediterranean_phage	42.2	5.1e-14
WP_010931117.1|2904879_2906085_-	3-oxoadipyl-CoA thiolase	NA	NA	NA	NA	NA
WP_019247560.1|2906200_2907598_-	chloride channel protein	NA	NA	NA	NA	NA
WP_010931119.1|2907714_2908293_-	superoxide dismutase [Fe]	NA	NA	NA	NA	NA
WP_010931120.1|2908365_2909757_-	exodeoxyribonuclease VII large subunit	NA	A0A1V0SD82	Indivirus	32.0	1.4e-29
WP_005012067.1|2909924_2910875_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812889.1|2911155_2911776_+	MotA/TolQ/ExbB proton channel family protein	NA	NA	NA	NA	NA
WP_010931122.1|2911772_2912186_+	biopolymer transporter ExbD	NA	NA	NA	NA	NA
WP_010931123.1|2912182_2913226_+	tetraacyldisaccharide 4'-kinase	NA	NA	NA	NA	NA
WP_003812895.1|2913281_2913470_+	Trm112 family protein	NA	NA	NA	NA	NA
WP_010931124.1|2913479_2914244_+	3-deoxy-manno-octulosonate cytidylyltransferase	NA	NA	NA	NA	NA
WP_010931125.1|2914334_2914991_+	adenylate kinase	NA	NA	NA	NA	NA
WP_010931126.1|2915082_2915841_+	3-hydroxyacyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_010931127.1|2915866_2917468_+	murein biosynthesis integral membrane protein MurJ	NA	NA	NA	NA	NA
WP_010931128.1|2917668_2918673_+	FecR domain-containing protein	NA	NA	NA	NA	NA
WP_003812908.1|2918773_2919037_+	30S ribosomal protein S20	NA	NA	NA	NA	NA
WP_010931129.1|2919154_2919931_-	2-dehydro-3-deoxyglucarate aldolase	NA	NA	NA	NA	NA
WP_005012067.1|2920521_2921472_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931130.1|2923855_2924968_-	Ldh family oxidoreductase	NA	NA	NA	NA	NA
WP_005012808.1|2925024_2925975_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 25
NZ_CP010263	Bordetella pertussis strain I646 chromosome, complete genome	4105348	2956361	2995550	4105348	transposase	Planktothrix_phage(50.0%)	37	NA	NA
WP_005012067.1|2956361_2957312_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_162268686.1|2957329_2957479_+	hypothetical protein	NA	NA	NA	NA	NA
WP_023852715.1|2957432_2958329_-	inositol monophosphatase	NA	NA	NA	NA	NA
WP_003814547.1|2960606_2962832_+	glycoside hydrolase family 31 protein	NA	NA	NA	NA	NA
WP_003814544.1|2962996_2964085_+	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	36.4	8.7e-32
WP_019247918.1|2964041_2964695_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931144.1|2964742_2965540_+	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_005012067.1|2966071_2967022_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247277.1|2967096_2968251_+	iron-containing alcohol dehydrogenase	NA	NA	NA	NA	NA
WP_005012067.1|2968307_2969258_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814535.1|2969356_2969662_-	antibiotic biosynthesis monooxygenase	NA	NA	NA	NA	NA
WP_003820797.1|2969690_2970125_-	DUF126 domain-containing protein	NA	NA	NA	NA	NA
WP_010931147.1|2970126_2971371_-	DUF521 domain-containing protein	NA	NA	NA	NA	NA
WP_003820799.1|2971367_2972078_-	FadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_033446288.1|2972092_2973004_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931149.1|2973366_2973771_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247890.1|2973767_2974226_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_019247891.1|2974232_2975141_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_010931150.1|2975137_2976004_+	sugar ABC transporter permease	NA	NA	NA	NA	NA
WP_003814524.1|2975990_2976818_+	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
WP_003820806.1|2976828_2977956_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	32.3	1.2e-23
WP_023852748.1|2979033_2980272_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931152.1|2980313_2981576_+	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_010931153.1|2981582_2982335_+	DNA-binding protein	NA	NA	NA	NA	NA
WP_019248355.1|2982386_2982572_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003820813.1|2982847_2983312_+	redox-sensitive transcriptional activator SoxR	NA	NA	NA	NA	NA
WP_003820814.1|2983343_2984003_+	DNA-3-methyladenine glycosylase I	NA	NA	NA	NA	NA
WP_010931154.1|2984147_2986256_+	AsmA family protein	NA	NA	NA	NA	NA
WP_023852714.1|2986252_2987203_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931155.1|2987306_2987927_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931156.1|2988018_2988771_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_019248356.1|2989905_2991030_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247402.1|2991075_2991444_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|2991685_2992636_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247492.1|2993671_2994214_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023998107.1|2994411_2994582_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|2994599_2995550_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 27
NZ_CP010263	Bordetella pertussis strain I646 chromosome, complete genome	4105348	3381046	3434787	4105348	transposase	Staphylococcus_phage(33.33%)	48	NA	NA
WP_023995489.1|3381046_3381997_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931336.1|3382401_3383046_-	urease accessory protein UreG	NA	NA	NA	NA	NA
WP_019247677.1|3383070_3383655_-	urease accessory protein UreF	NA	NA	NA	NA	NA
WP_014905506.1|3383755_3384373_-	urease accessory protein UreE	NA	NA	NA	NA	NA
WP_010931337.1|3384375_3386091_-	urease subunit alpha	NA	NA	NA	NA	NA
WP_010931338.1|3386087_3386396_-	urease subunit beta	NA	NA	NA	NA	NA
WP_003814828.1|3386412_3387030_-	HupE/UreJ family protein	NA	NA	NA	NA	NA
WP_010931340.1|3387074_3387377_-	urease subunit gamma	NA	NA	NA	NA	NA
WP_003814832.1|3387477_3388332_-	urease accessory protein UreD	NA	NA	NA	NA	NA
WP_124740609.1|3388519_3388744_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929281.1|3388913_3389186_+	MerR family DNA-binding transcriptional regulator	NA	NA	NA	NA	NA
WP_010929282.1|3389603_3390011_-	GFA family protein	NA	NA	NA	NA	NA
WP_010931341.1|3390380_3391175_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010927102.1|3391275_3392511_+	methylaspartate ammonia-lyase	NA	NA	NA	NA	NA
WP_003814852.1|3392579_3393596_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931342.1|3393607_3394984_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_003814856.1|3394980_3396177_+	MFS transporter	NA	NA	NA	NA	NA
WP_003814858.1|3396173_3397712_-	SpoVR family protein	NA	NA	NA	NA	NA
WP_010931343.1|3397708_3398968_-	YeaH/YhbH family protein	NA	NA	NA	NA	NA
WP_005012067.1|3400908_3401859_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931344.1|3402625_3403720_-	CoA transferase	NA	NA	NA	NA	NA
WP_019247312.1|3403712_3405047_-	AMP-binding protein	NA	NA	NA	NA	NA
WP_003808193.1|3405000_3405684_-	TetR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003808195.1|3405709_3406873_-	acyl-CoA dehydrogenase family protein	NA	NA	NA	NA	NA
WP_004566224.1|3406869_3407871_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010931346.1|3407870_3408743_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010931347.1|3408739_3409489_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	27.8	1.9e-09
WP_010931348.1|3409485_3410277_-	ATP-binding cassette domain-containing protein	NA	A0A1M7XV31	Cedratvirus	29.4	1.7e-08
WP_010931349.1|3410273_3411413_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_047122778.1|3411688_3412474_+	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_014486103.1|3412507_3413290_+	crotonase/enoyl-CoA hydratase family protein	NA	NA	NA	NA	NA
WP_010931351.1|3413293_3413683_+	OB-fold domain-containing protein	NA	NA	NA	NA	NA
WP_010931352.1|3414822_3415686_+	MaoC family dehydratase N-terminal domain-containing protein	NA	NA	NA	NA	NA
WP_010931353.1|3415721_3416810_+	NAD(P)H-binding protein	NA	NA	NA	NA	NA
WP_010931070.1|3416806_3417757_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247959.1|3418110_3421089_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003818344.1|3422015_3422894_+	fatty acid desaturase	NA	NA	NA	NA	NA
WP_005013747.1|3424842_3425793_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931354.1|3425789_3426257_-	ribonuclease HI	NA	J9Q745	Salmonella_phage	50.7	5.6e-36
WP_010931355.1|3426299_3427070_-	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_010927090.1|3427090_3427891_+	hydroxyacylglutathione hydrolase	NA	NA	NA	NA	NA
WP_010931356.1|3427901_3429311_+	transglycosylase SLT domain-containing protein	NA	NA	NA	NA	NA
WP_003814739.1|3429405_3430191_+	enoyl-ACP reductase FabI	NA	NA	NA	NA	NA
WP_010931561.1|3430430_3431447_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003814742.1|3431554_3431947_-	OsmC family protein	NA	NA	NA	NA	NA
WP_010931357.1|3432084_3432765_+	tellurite resistance TerB family protein	NA	NA	NA	NA	NA
WP_023994844.1|3432769_3433741_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930179.1|3433836_3434787_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 28
NZ_CP010263	Bordetella pertussis strain I646 chromosome, complete genome	4105348	3440942	3500242	4105348	transposase,tRNA	Acinetobacter_phage(27.27%)	48	NA	NA
WP_003820957.1|3440942_3442706_+|tRNA	glutamine--tRNA ligase/YqeY domain fusion protein	tRNA	A0A222YZ70	Escherichia_phage	50.0	5.0e-162
WP_010931362.1|3442817_3443696_+	septum site-determining protein MinC	NA	NA	NA	NA	NA
WP_003814250.1|3443808_3444624_+	septum site-determining protein MinD	NA	NA	NA	NA	NA
WP_003814252.1|3444627_3444879_+	cell division topological specificity factor MinE	NA	NA	NA	NA	NA
WP_010929632.1|3444963_3445980_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003814254.1|3446310_3446532_-	glycine zipper 2TM domain-containing protein	NA	NA	NA	NA	NA
WP_019247693.1|3448892_3449810_-	DMT family transporter	NA	NA	NA	NA	NA
WP_019247692.1|3450307_3451516_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931365.1|3451595_3453167_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003814275.1|3453284_3454220_-	glycosyltransferase family 2 protein	NA	NA	NA	NA	NA
WP_003814277.1|3454408_3455353_+	LysR family transcriptional regulator	NA	A0A2P0ZL89	Lactobacillus_phage	23.2	8.4e-07
WP_003814283.1|3455920_3461638_+	excinuclease ABC subunit UvrA	NA	A0A1B1IVR3	uncultured_Mediterranean_phage	39.5	1.0e-195
WP_010931367.1|3461643_3462771_+	aminodeoxychorismate synthase component I	NA	S4VT78	Pandoravirus	37.8	3.8e-38
WP_003814287.1|3462826_3463453_+	aminotransferase class IV	NA	NA	NA	NA	NA
WP_010931363.1|3463724_3464741_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010927020.1|3464836_3465547_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010931368.1|3465543_3466533_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931369.1|3466628_3468260_+	AMP-binding protein	NA	NA	NA	NA	NA
WP_010931370.1|3468262_3469000_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247745.1|3469155_3470028_-|tRNA	tRNA threonylcarbamoyladenosine dehydratase	tRNA	NA	NA	NA	NA
WP_003814298.1|3470296_3471517_+	MFS transporter	NA	NA	NA	NA	NA
WP_003814300.1|3471513_3472173_+	gamma-glutamylcyclotransferase	NA	NA	NA	NA	NA
WP_003814302.1|3472244_3472877_+	pyridoxamine 5'-phosphate oxidase	NA	NA	NA	NA	NA
WP_010931372.1|3472906_3473425_+	flavin reductase family protein	NA	NA	NA	NA	NA
WP_010931373.1|3473435_3474545_+	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_003814312.1|3474591_3475446_+	formyltetrahydrofolate deformylase	NA	NA	NA	NA	NA
WP_010931374.1|3475447_3476350_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|3477572_3478523_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023997720.1|3480279_3481269_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247413.1|3481265_3481424_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931375.1|3481444_3482233_-	indole-3-glycerol phosphate synthase TrpC	NA	A0A0P0IR83	Acinetobacter_phage	53.0	5.1e-66
WP_003817833.1|3482229_3483261_-	anthranilate phosphoribosyltransferase	NA	A0A0N7IRD9	Acinetobacter_phage	42.7	7.4e-73
WP_003815390.1|3483279_3483843_-	aminodeoxychorismate/anthranilate synthase component II	NA	A0A0P0IKJ1	Acinetobacter_phage	62.1	1.1e-65
WP_010931376.1|3483898_3485419_-	anthranilate synthase component I	NA	S4VT78	Pandoravirus	32.1	9.0e-43
WP_010931377.1|3485682_3486387_-	phosphoglycolate phosphatase	NA	NA	NA	NA	NA
WP_003815384.1|3486394_3487132_-	ribulose-phosphate 3-epimerase	NA	NA	NA	NA	NA
WP_003815381.1|3487237_3487612_+	Co2+/Mg2+ efflux protein ApaG	NA	NA	NA	NA	NA
WP_003815379.1|3487654_3488944_+	murein transglycosylase A	NA	NA	NA	NA	NA
WP_010931378.1|3488940_3490110_+	UbiH/UbiF family hydroxylase	NA	NA	NA	NA	NA
WP_010931379.1|3490106_3490946_+	thiol:disulfide interchange protein DsbC	NA	NA	NA	NA	NA
WP_010931380.1|3491005_3491941_+	D-2-hydroxyacid dehydrogenase family protein	NA	A0A1J0F959	Only_Syngen_Nebraska_virus	27.7	6.4e-15
WP_005012067.1|3491953_3492904_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931381.1|3493002_3493965_-|tRNA	tRNA 2-thiocytidine(32) synthetase TtcA	tRNA	A0A0U2S5Z2	Escherichia_phage	64.5	4.6e-93
WP_003817821.1|3493996_3494356_-	dihydroneopterin aldolase	NA	NA	NA	NA	NA
WP_010931382.1|3494480_3495383_+	NAD(P)/FAD-dependent oxidoreductase	NA	G3MA85	Bacillus_virus	24.0	1.9e-08
WP_010931383.1|3495384_3497157_-	M61 family metallopeptidase	NA	NA	NA	NA	NA
WP_003815367.1|3497191_3497968_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_023852617.1|3499291_3500242_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 29
NZ_CP010263	Bordetella pertussis strain I646 chromosome, complete genome	4105348	3515180	3573253	4105348	transposase,tRNA	Planktothrix_phage(12.5%)	47	NA	NA
WP_005012808.1|3515180_3516131_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931392.1|3516259_3517393_-	M20 family metallopeptidase	NA	NA	NA	NA	NA
WP_010931393.1|3517436_3518342_-	hydrolase	NA	NA	NA	NA	NA
WP_023852622.1|3518344_3520045_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	32.7	1.0e-15
WP_010931394.1|3520041_3520962_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_003817805.1|3520969_3521947_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931395.1|3522005_3523040_-	succinylglutamate desuccinylase/aspartoacylase family protein	NA	NA	NA	NA	NA
WP_003815317.1|3525014_3525251_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023995266.1|3525377_3526241_-	NAD(P)H-hydrate dehydratase	NA	NA	NA	NA	NA
WP_003815315.1|3526329_3527151_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003815313.1|3527230_3527968_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010931397.1|3527964_3528957_-	nitronate monooxygenase	NA	NA	NA	NA	NA
WP_003817794.1|3529070_3529733_+	TetR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931399.1|3529777_3530926_+	acyl-CoA dehydrogenase family protein	NA	NA	NA	NA	NA
WP_010931400.1|3533249_3534200_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014486105.1|3534540_3535491_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|3535589_3536540_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_029443756.1|3536836_3537334_+	cupredoxin family protein	NA	NA	NA	NA	NA
WP_010931403.1|3537376_3539152_+	copper resistance system multicopper oxidase	NA	NA	NA	NA	NA
WP_010931404.1|3539159_3540026_+	copper resistance protein B	NA	NA	NA	NA	NA
WP_019249391.1|3540032_3540767_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010931406.1|3541936_3542731_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003815296.1|3543020_3543611_+	cysteine dioxygenase	NA	NA	NA	NA	NA
WP_010931407.1|3543644_3544973_-	amidase	NA	NA	NA	NA	NA
WP_010931408.1|3545047_3546193_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_014905478.1|3546304_3547303_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_033446233.1|3547265_3547700_+	carbon monoxide dehydrogenase	NA	NA	NA	NA	NA
WP_010929974.1|3549216_3550101_+	DMT family transporter	NA	NA	NA	NA	NA
WP_010929973.1|3550097_3551303_-	cardiolipin synthase ClsB	NA	NA	NA	NA	NA
WP_010929972.1|3551299_3552160_-	endonuclease/exonuclease/phosphatase family protein	NA	NA	NA	NA	NA
WP_003807038.1|3552272_3554063_-|tRNA	aspartate--tRNA ligase	tRNA	A0A1V0SAC0	Catovirus	25.5	6.5e-08
WP_003807035.1|3554103_3554769_-	DUF502 domain-containing protein	NA	A0A2I7S9X1	Vibrio_phage	28.4	6.7e-11
WP_010929971.1|3554769_3555078_-	FmdB family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929970.1|3555243_3556530_-	putative Na+/H+ antiporter	NA	NA	NA	NA	NA
WP_010929969.1|3557963_3558914_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929968.1|3560865_3562080_-	formate-dependent phosphoribosylglycinamide formyltransferase	NA	NA	NA	NA	NA
WP_003815171.1|3562185_3563175_+	KpsF/GutQ family sugar-phosphate isomerase	NA	A0A2P0VNK5	Tetraselmis_virus	37.7	4.3e-38
WP_003815172.1|3563171_3563780_+	HAD-IIIA family hydrolase	NA	E3T535	Cafeteria_roenbergensis_virus	26.1	5.2e-10
WP_010929967.1|3563792_3564422_+	LPS export ABC transporter periplasmic protein LptC	NA	NA	NA	NA	NA
WP_003815175.1|3564418_3565039_+	lipopolysaccharide transport periplasmic protein LptA	NA	NA	NA	NA	NA
WP_003815177.1|3565070_3565862_+	LPS export ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	27.4	9.5e-20
WP_010929966.1|3566713_3567169_+	PTS sugar transporter subunit IIA	NA	NA	NA	NA	NA
WP_010929965.1|3567187_3568114_+	HPr kinase/phosphorylase	NA	NA	NA	NA	NA
WP_010929964.1|3568167_3569454_-	cytochrome c	NA	NA	NA	NA	NA
WP_003815183.1|3570384_3571257_+	RNase adapter RapZ	NA	A0A1P8D5W0	Corynebacterium_phage	34.5	2.4e-08
WP_010929963.1|3571253_3572204_+	septal ring lytic transglycosylase RlpA family protein	NA	F5B3X9	Synechococcus_phage	47.2	6.9e-17
WP_005012067.1|3572302_3573253_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 31
NZ_CP010263	Bordetella pertussis strain I646 chromosome, complete genome	4105348	4027520	4080952	4105348	transposase	Planktothrix_phage(40.0%)	46	NA	NA
WP_010931661.1|4027520_4028471_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931662.1|4028640_4029867_+	bifunctional glutamate N-acetyltransferase/amino-acid acetyltransferase ArgJ	NA	NA	NA	NA	NA
WP_010931663.1|4030066_4030933_+	ATP-binding protein	NA	NA	NA	NA	NA
WP_003815027.1|4030925_4031888_+	Nudix family hydrolase	NA	A0A221LFJ1	Barns_Ness_breadcrumb_sponge_sobemo-like_virus	53.4	1.9e-06
WP_010927663.1|4031988_4032939_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|4033037_4033988_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929577.1|4034086_4035037_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994937.1|4035033_4036527_-	efflux transporter outer membrane subunit	NA	NA	NA	NA	NA
WP_003815032.1|4036523_4039631_-	multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_010931665.1|4039627_4042696_-	MdtB/MuxB family multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_010931666.1|4042692_4043943_-	MdtA/MuxA family multidrug efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
WP_003815038.1|4044123_4044885_-	cell division protein ZapD	NA	NA	NA	NA	NA
WP_019247320.1|4044917_4045568_-	dephospho-CoA kinase	NA	NA	NA	NA	NA
WP_003820519.1|4045570_4046410_-	prepilin peptidase	NA	NA	NA	NA	NA
WP_003815047.1|4046650_4047394_+	copper resistance protein NlpE N-terminal domain-containing protein	NA	NA	NA	NA	NA
WP_003815049.1|4047476_4047824_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003815051.1|4047921_4048764_-	pantoate--beta-alanine ligase	NA	NA	NA	NA	NA
WP_003815053.1|4048808_4049696_-	segregation/condensation protein A	NA	NA	NA	NA	NA
WP_003815055.1|4049722_4049911_-	DUF3460 family protein	NA	NA	NA	NA	NA
WP_010931669.1|4050008_4051466_+	DHA2 family efflux MFS transporter permease subunit	NA	NA	NA	NA	NA
WP_010931670.1|4051452_4052979_+	glycerol kinase GlpK	NA	NA	NA	NA	NA
WP_003815061.1|4052997_4053465_-	CopD family protein	NA	NA	NA	NA	NA
WP_010931671.1|4053464_4054487_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_169507388.1|4054607_4055327_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	39.9	4.7e-34
WP_003815066.1|4055402_4056503_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003815068.1|4056504_4057695_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003815070.1|4057814_4058831_-	amino acid ABC transporter substrate-binding protein	NA	A0A1B1IT51	uncultured_Mediterranean_phage	42.1	1.0e-71
WP_003815073.1|4059149_4059821_+	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	38.2	9.5e-29
WP_010927126.1|4059817_4060726_+	FtsX-like permease family protein	NA	NA	NA	NA	NA
WP_010931672.1|4060937_4061585_+	chemoreceptor glutamine deamidase CheD	NA	NA	NA	NA	NA
WP_010931673.1|4065436_4066513_+	A/G-specific adenine glycosylase	NA	NA	NA	NA	NA
WP_003815084.1|4066523_4067333_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003815086.1|4067422_4068196_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_023853189.1|4068196_4068361_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930363.1|4068378_4069329_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_077274100.1|4069217_4070240_+	CoA transferase	NA	NA	NA	NA	NA
WP_010931674.1|4070229_4071384_+	CoA transferase	NA	NA	NA	NA	NA
WP_010931675.1|4071423_4072836_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_019247370.1|4072960_4073827_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931677.1|4073828_4074653_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_023853488.1|4074649_4075411_+	nitroreductase	NA	M1I6Q5	Acanthocystis_turfacea_Chlorella_virus	31.0	2.0e-19
WP_003808010.1|4075491_4076178_-	TetR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931679.1|4076351_4077359_+	hydroxymethylglutaryl-CoA lyase	NA	NA	NA	NA	NA
WP_003819309.1|4077355_4078135_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010931680.1|4078192_4079455_+	CoA transferase	NA	NA	NA	NA	NA
WP_005012067.1|4080001_4080952_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
