The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP010261	Bordetella pertussis strain I538 chromosome, complete genome	4107716	27282	70036	4107716	tRNA,transposase	Synechococcus_phage(50.0%)	41	NA	NA
WP_010930363.1|27282_28233_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023995007.1|28314_28650_-	CoA transferase	NA	NA	NA	NA	NA
WP_010929578.1|28674_29109_-	OB-fold domain-containing protein	NA	NA	NA	NA	NA
WP_019247164.1|29141_30359_-	thiolase family protein	NA	NA	NA	NA	NA
WP_010929580.1|30364_30862_-	MaoC family dehydratase	NA	NA	NA	NA	NA
WP_019247165.1|31069_32005_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929582.1|32214_33006_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010929583.1|33048_34470_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_010929584.1|34625_35576_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814398.1|35572_36763_-	MFS transporter	NA	NA	NA	NA	NA
WP_010929585.1|37012_37924_+|tRNA	glycine--tRNA ligase subunit alpha	tRNA	NA	NA	NA	NA
WP_010929586.1|37925_40064_+|tRNA	glycine--tRNA ligase subunit beta	tRNA	NA	NA	NA	NA
WP_003814404.1|40060_40600_+	D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase	NA	NA	NA	NA	NA
WP_003814405.1|40603_41332_+	1-acyl-sn-glycerol-3-phosphate acyltransferase	NA	NA	NA	NA	NA
WP_010929587.1|41318_42212_+	M48 family metallopeptidase	NA	NA	NA	NA	NA
WP_019247766.1|42282_42678_+	lactoylglutathione lyase	NA	NA	NA	NA	NA
WP_003814412.1|42687_43218_+	peptide deformylase	NA	E3SLL2	Synechococcus_phage	35.4	3.7e-12
WP_010929588.1|43663_44614_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929589.1|45200_45749_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815265.1|45720_45957_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003815255.1|46084_46978_+	AEC family transporter	NA	NA	NA	NA	NA
WP_010929590.1|48147_49395_+	homoserine O-acetyltransferase	NA	NA	NA	NA	NA
WP_003817748.1|49391_50006_+	methionine biosynthesis protein MetW	NA	NA	NA	NA	NA
WP_010929591.1|50141_51092_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_029443813.1|51134_52391_+	muropeptide transporter	NA	NA	NA	NA	NA
WP_010929592.1|53622_54357_-	aspartate/glutamate racemase family protein	NA	NA	NA	NA	NA
WP_019247224.1|54362_54953_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.6	3.2e-20
WP_003817737.1|54977_55667_-	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_023852650.1|55663_56425_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010929594.1|56504_57404_-	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_005012808.1|57497_58448_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929595.1|59248_60475_-	type II toxin-antitoxin system HipA family toxin	NA	NA	NA	NA	NA
WP_047122776.1|60474_60888_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010929597.1|61077_62019_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019248755.1|62442_63417_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929599.1|63473_64055_-	DJ-1/PfpI family protein	NA	NA	NA	NA	NA
WP_010929600.1|64067_64370_-	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA	NA
WP_029443770.1|64488_65547_-	2Fe-2S iron-sulfur cluster binding domain-containing protein	NA	NA	NA	NA	NA
WP_019247832.1|65581_66853_-	TRAP transporter large permease	NA	NA	NA	NA	NA
WP_010929603.1|67482_68664_-	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_005012808.1|69085_70036_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 2
NZ_CP010261	Bordetella pertussis strain I538 chromosome, complete genome	4107716	77634	136108	4107716	tRNA,transposase	Planktothrix_phage(22.22%)	54	NA	NA
WP_005012067.1|77634_78585_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_041166334.1|78659_79604_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929608.1|79600_81475_-	O-antigen biosynthesis protein WlbL	NA	A0A2P1ELS8	Moumouvirus	26.9	2.0e-23
WP_003807102.1|82822_83527_-	O-antigen biosynthesis protein WlbI	NA	NA	NA	NA	NA
WP_010929609.1|83523_84696_-	O-antigen biosynthesis protein WlbH	NA	NA	NA	NA	NA
WP_010929610.1|84891_85485_-	O-antigen biosynthesis protein WlbG	NA	NA	NA	NA	NA
WP_010929611.1|85481_86714_-	O-antigen biosynthesis protein WlbF	NA	NA	NA	NA	NA
WP_010929612.1|86731_87991_-	O-antigen biosynthesis protein WlbE	NA	NA	NA	NA	NA
WP_010929613.1|88014_89103_-	O-antigen biosynthesis protein WlbD	NA	A0A0N9R0B2	Chrysochromulina_ericina_virus	36.3	4.8e-46
WP_010929614.1|89110_90211_-	O-antigen biosynthesis protein WlbC	NA	A0A2K9L0G1	Tupanvirus	29.7	3.3e-31
WP_003807114.1|90214_90790_-	O-antigen biosynthesis protein WlbB	NA	NA	NA	NA	NA
WP_003807115.1|90793_91846_-	O-antigen biosynthesis protein WlbA	NA	NA	NA	NA	NA
WP_010929615.1|91976_92984_+	lipopolysaccharide heptosyltransferase I	NA	NA	NA	NA	NA
WP_010929616.1|92985_94272_+	3-deoxy-D-manno-octulosonic acid transferase	NA	NA	NA	NA	NA
WP_003807124.1|94288_94444_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929617.1|94468_95272_-	type III pantothenate kinase	NA	NA	NA	NA	NA
WP_010929618.1|95268_96135_-	biotin--[acetyl-CoA-carboxylase] ligase	NA	NA	NA	NA	NA
WP_010929619.1|96209_97340_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_003807131.1|97339_98179_+	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	32.4	9.1e-21
WP_010929620.1|99111_99714_+	membrane integrity-associated transporter subunit PqiC	NA	NA	NA	NA	NA
WP_010929621.1|99743_100397_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003807138.1|100529_101786_+	D-alanyl-D-alanine carboxypeptidase	NA	B6DZZ7	Stx2-converting_phage	40.5	6.2e-66
WP_010929622.1|101833_102733_+	D-amino acid aminotransferase	NA	NA	NA	NA	NA
WP_003818417.1|102808_103084_+	YbeD family protein	NA	NA	NA	NA	NA
WP_010929623.1|103091_103754_+	lipoyl(octanoyl) transferase LipB	NA	NA	NA	NA	NA
WP_003807146.1|103815_104817_+	lipoyl synthase	NA	NA	NA	NA	NA
WP_003807148.1|104831_105380_-	dTDP-4-dehydrorhamnose 3,5-epimerase	NA	A0A291LA62	Escherichia_phage	53.4	3.7e-47
WP_010929624.1|105437_106334_-	dTDP-4-dehydrorhamnose reductase	NA	NA	NA	NA	NA
WP_010929625.1|106330_107392_-	dTDP-glucose 4,6-dehydratase	NA	A0A1D7XFE8	Escherichia_phage	44.8	1.6e-78
WP_010929626.1|107427_108378_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929627.1|109277_110471_+	cystathionine beta-lyase	NA	NA	NA	NA	NA
WP_010929628.1|110552_111182_-	thiol:disulfide interchange protein DsbA/DsbL	NA	NA	NA	NA	NA
WP_010927242.1|111243_111927_-	SPOR domain-containing protein	NA	NA	NA	NA	NA
WP_023853376.1|111936_113619_-|tRNA	arginine--tRNA ligase	tRNA	NA	NA	NA	NA
WP_003815933.1|113906_114254_+	DUF1840 domain-containing protein	NA	NA	NA	NA	NA
WP_003815930.1|114344_114662_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931363.1|114944_115961_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003815929.1|116036_116837_-	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
WP_003815927.1|116833_117709_-	sugar ABC transporter permease	NA	NA	NA	NA	NA
WP_010929633.1|117719_119012_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929634.1|119054_120095_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.7	6.0e-22
WP_010929635.1|120200_121022_-	phosphodiesterase	NA	NA	NA	NA	NA
WP_005012067.1|121122_122073_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014905488.1|122171_123077_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	31.7	9.8e-21
WP_003815918.1|123073_123907_-	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_010929637.1|124743_125754_-	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_019247800.1|125750_126140_-	substrate-binding domain-containing protein	NA	NA	NA	NA	NA
WP_010929638.1|127033_128287_+	amidase	NA	NA	NA	NA	NA
WP_010929639.1|128377_130078_-	2-isopropylmalate synthase	NA	NA	NA	NA	NA
WP_010929640.1|130504_131152_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023853393.1|131150_132590_+	RNA polymerase factor sigma-54	NA	NA	NA	NA	NA
WP_003815905.1|132682_132985_+	bacterioferritin-associated ferredoxin	NA	NA	NA	NA	NA
WP_010929512.1|133012_133891_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|135157_136108_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 3
NZ_CP010261	Bordetella pertussis strain I538 chromosome, complete genome	4107716	164892	225403	4107716	protease,tRNA,transposase	Diachasmimorpha_longicaudata_entomopoxvirus(11.11%)	51	NA	NA
WP_010930800.1|164892_165843_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929659.1|167286_168189_-	YgcG family protein	NA	NA	NA	NA	NA
WP_003815889.1|168166_168796_-	LemA family protein	NA	NA	NA	NA	NA
WP_010929660.1|169078_170509_+	DEAD/DEAH box helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	29.8	5.8e-44
WP_010929661.1|170542_171172_+	LysE family transporter	NA	NA	NA	NA	NA
WP_003815895.1|171220_172828_+	peptide chain release factor 3	NA	A0A2K9L6L3	Tupanvirus	37.8	9.3e-14
WP_010929663.1|172852_173536_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815898.1|173617_174094_-	bacterioferritin	NA	NA	NA	NA	NA
WP_010929591.1|174300_175251_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929664.1|176366_176894_+	META domain-containing protein	NA	NA	NA	NA	NA
WP_010929665.1|176985_177801_+	META and DUF4377 domain-containing protein	NA	NA	NA	NA	NA
WP_003808370.1|177861_178596_+	sulfurtransferase	NA	NA	NA	NA	NA
WP_010929666.1|178633_180712_-|tRNA	methionine--tRNA ligase	tRNA	A0A1V0SHR2	Klosneuvirus	23.6	1.5e-27
WP_003808374.1|180961_181234_-	hypothetical protein	NA	NA	NA	NA	NA
WP_033446322.1|181335_182421_+	iron-sulfur cluster carrier protein ApbC	NA	NA	NA	NA	NA
WP_010929668.1|182424_184329_+	BamA/TamA family outer membrane protein	NA	NA	NA	NA	NA
WP_014486044.1|184325_188000_+	translocation/assembly module TamB domain-containing protein	NA	NA	NA	NA	NA
WP_010929670.1|188060_188624_+	dCTP deaminase	NA	S5VM63	Pseudomonas_phage	75.3	2.6e-72
WP_003808385.1|188631_189054_-	VOC family protein	NA	NA	NA	NA	NA
WP_010929671.1|189081_189501_-	VOC family protein	NA	NA	NA	NA	NA
WP_076879599.1|189529_190003_-	GNAT family N-acetyltransferase	NA	Q9AZG4	Lactococcus_phage	31.1	2.2e-11
WP_003808391.1|190102_190600_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003808393.1|190754_193025_+	arginine/lysine/ornithine decarboxylase	NA	NA	NA	NA	NA
WP_010929672.1|193073_194306_+	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_005012067.1|194404_195355_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929673.1|195457_196093_+	superoxide dismutase	NA	Q56AR7	Bacillus_thuringiensis_phage	73.8	2.8e-83
WP_019248671.1|196089_196983_+	ZIP family metal transporter	NA	NA	NA	NA	NA
WP_010929675.1|197377_198478_+	glycine cleavage system aminomethyltransferase GcvT	NA	NA	NA	NA	NA
WP_010929676.1|198559_198934_+	glycine cleavage system protein GcvH	NA	NA	NA	NA	NA
WP_010929677.1|198993_201858_+	aminomethyl-transferring glycine dehydrogenase	NA	E3SN07	Prochlorococcus_phage	51.4	1.2e-261
WP_010929678.1|202002_202743_-	FadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929679.1|202812_204024_+	CoA transferase	NA	NA	NA	NA	NA
WP_010929680.1|204052_205021_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_076879634.1|205634_206585_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929699.1|206741_207065_+	phosphate starvation-inducible protein	NA	NA	NA	NA	NA
WP_023853200.1|207169_208210_-	cyclase family protein	NA	NA	NA	NA	NA
WP_010929697.1|208215_208995_-	3-oxoadipate enol-lactonase	NA	NA	NA	NA	NA
WP_003807672.1|209040_209337_-	YciI family protein	NA	NA	NA	NA	NA
WP_003807674.1|209362_209638_-	muconolactone Delta-isomerase	NA	NA	NA	NA	NA
WP_003819086.1|209694_210339_-	CoA transferase subunit B	NA	NA	NA	NA	NA
WP_010929696.1|210338_211025_-	3-oxoacid CoA-transferase subunit A	NA	NA	NA	NA	NA
WP_010929695.1|211154_212006_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929694.1|212056_212782_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010929693.1|212813_214163_-	short-chain fatty acid transporter	NA	NA	NA	NA	NA
WP_010929692.1|214274_215207_-	3-hydroxyacyl-CoA dehydrogenase family protein	NA	NA	NA	NA	NA
WP_033455792.1|215664_218460_-|protease	serine protease autotransporter SphB1	protease	NA	NA	NA	NA
WP_010929690.1|219053_221996_-	phosphoenolpyruvate carboxylase	NA	NA	NA	NA	NA
WP_010929689.1|222067_222787_+	7-cyano-7-deazaguanine synthase QueC	NA	A0A0A0RPC6	Escherichia_phage	43.9	8.0e-50
WP_010929688.1|222825_223374_-	N-acetyltransferase	NA	A0A2H4J136	uncultured_Caudovirales_phage	41.7	1.2e-21
WP_010929687.1|223528_224428_+	virginiamycin B lyase	NA	NA	NA	NA	NA
WP_005012808.1|224452_225403_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 4
NZ_CP010261	Bordetella pertussis strain I538 chromosome, complete genome	4107716	233336	286924	4107716	protease,tRNA,transposase	Bacillus_phage(25.0%)	47	NA	NA
WP_005012067.1|233336_234287_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010927663.1|234373_235324_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930742.1|235320_236271_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929700.1|236369_237167_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_003814363.1|238116_238527_+	carboxymuconolactone decarboxylase family protein	NA	NA	NA	NA	NA
WP_003814358.1|239548_240292_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814356.1|240335_241379_-	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003814355.1|241549_243652_+	TRAP transporter large permease subunit	NA	NA	NA	NA	NA
WP_003814351.1|245062_246019_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929701.1|246037_246529_-	2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase	NA	NA	NA	NA	NA
WP_010929702.1|246525_247881_-	polynucleotide adenylyltransferase PcnB	NA	A0A1B1IVF3	uncultured_Mediterranean_phage	36.8	3.4e-25
WP_010929703.1|247881_248580_-	HAD-IB family hydrolase	NA	NA	NA	NA	NA
WP_010929704.1|248576_249278_-	DnaA regulatory inactivator Hda	NA	NA	NA	NA	NA
WP_003814339.1|249530_250580_+	phosphoribosylformylglycinamidine cyclo-ligase	NA	Q58MH8	Prochlorococcus_phage	43.6	5.6e-68
WP_003814337.1|250685_251627_-|tRNA	tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA	tRNA	NA	NA	NA	NA
WP_010929705.1|251623_253513_-	DNA mismatch repair endonuclease MutL	NA	A0A1B2LRQ5	Wolbachia_phage	32.8	3.3e-79
WP_003814332.1|253599_254238_+	VTT domain-containing protein	NA	NA	NA	NA	NA
WP_019247543.1|254380_255766_-	N-acetylmuramoyl-L-alanine amidase	NA	A0A2H4JCM7	uncultured_Caudovirales_phage	30.3	4.5e-17
WP_010929706.1|255696_256233_-|tRNA	bifunctional alanine racemase/tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE	tRNA	NA	NA	NA	NA
WP_010929707.1|256384_257776_+	class II fumarate hydratase	NA	NA	NA	NA	NA
WP_010929708.1|257792_258773_-	AEC family transporter	NA	NA	NA	NA	NA
WP_003814324.1|258908_259892_+	tripartite tricarboxylate transporter substrate binding protein BugE	NA	NA	NA	NA	NA
WP_010929709.1|259956_260856_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814321.1|260962_262717_+	gamma-glutamyltransferase	NA	NA	NA	NA	NA
WP_010929710.1|262724_263849_-	CoA transferase	NA	NA	NA	NA	NA
WP_010929711.1|263862_264843_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_005012067.1|265573_266524_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929712.1|267083_267629_+	GbsR/MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929713.1|267712_269332_+	cytochrome d ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
WP_004567834.1|269347_270502_+	cytochrome d ubiquinol oxidase subunit II	NA	NA	NA	NA	NA
WP_003817696.1|270515_270641_+	cytochrome bd-I oxidase subunit CydX	NA	NA	NA	NA	NA
WP_010929714.1|270637_272389_+	thiol reductant ABC exporter subunit CydD	NA	W8CYL7	Bacillus_phage	23.8	3.4e-09
WP_010929715.1|272385_274065_+	thiol reductant ABC exporter subunit CydC	NA	W8CYL7	Bacillus_phage	27.6	3.6e-16
WP_010929716.1|274127_274676_+	adenine phosphoribosyltransferase	NA	A0A1V0SKE5	Klosneuvirus	43.1	1.3e-28
WP_010929717.1|275818_276097_+	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|277140_278091_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929718.1|278368_278530_+	DUF4224 domain-containing protein	NA	NA	NA	NA	NA
WP_010929719.1|278537_278678_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815821.1|279196_279646_-|protease	ClpXP protease specificity-enhancing factor	protease	NA	NA	NA	NA
WP_003815819.1|279655_280267_-	glutathione S-transferase N-terminal domain-containing protein	NA	NA	NA	NA	NA
WP_019247426.1|280425_281280_-	cytochrome c1	NA	NA	NA	NA	NA
WP_003815816.1|281299_282682_-	cytochrome bc complex cytochrome b subunit	NA	NA	NA	NA	NA
WP_003815815.1|282746_283388_-	ubiquinol-cytochrome c reductase iron-sulfur subunit	NA	NA	NA	NA	NA
WP_010929721.1|283527_283986_+	large conductance mechanosensitive channel protein MscL	NA	NA	NA	NA	NA
WP_010927226.1|284010_284787_-	Nif3-like dinuclear metal center hexameric protein	NA	NA	NA	NA	NA
WP_014906092.1|284840_285977_+	trypsin-like peptidase domain-containing protein	NA	W5SAB9	Pithovirus	31.2	1.2e-07
WP_005015810.1|285973_286924_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 5
NZ_CP010261	Bordetella pertussis strain I538 chromosome, complete genome	4107716	390857	448366	4107716	transposase	Orpheovirus(14.29%)	50	NA	NA
WP_005012067.1|390857_391808_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010927231.1|391944_392862_+	reductase	NA	NA	NA	NA	NA
WP_003815842.1|392858_393107_+	glutaredoxin family protein	NA	NA	NA	NA	NA
WP_003815840.1|393103_394309_+	CoA transferase	NA	NA	NA	NA	NA
WP_014486045.1|394381_395377_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_014486046.1|395399_396620_-	CoA transferase	NA	NA	NA	NA	NA
WP_014486047.1|396616_397261_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019248476.1|398991_399801_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_014486048.1|400105_401059_+	thioredoxin-disulfide reductase	NA	A0A2I2L5E1	Orpheovirus	42.5	5.6e-59
WP_014486049.1|401157_402141_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014486050.1|402067_402769_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_014486051.1|402817_403588_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_019247259.1|403584_404763_-	CoA transferase	NA	NA	NA	NA	NA
WP_014486052.1|404930_406637_-	thiamine pyrophosphate-requiring protein	NA	NA	NA	NA	NA
WP_014486053.1|406633_407530_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_014486054.1|407570_409160_-	rhodanese homology domain-containing protein	NA	NA	NA	NA	NA
WP_003807867.1|409209_410202_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003807865.1|410270_410870_-	hypothetical protein	NA	NA	NA	NA	NA
WP_014486055.1|411330_412311_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929577.1|412386_413337_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_047122777.1|413425_414340_+	DMT family transporter	NA	NA	NA	NA	NA
WP_010929782.1|414336_414996_+	LysE family translocator	NA	NA	NA	NA	NA
WP_003814709.1|415085_416009_+	alpha/beta fold hydrolase	NA	A0A1C9C5K3	Heterosigma_akashiwo_virus	27.2	4.8e-07
WP_010929783.1|416014_416470_-	multidrug/biocide efflux PACE transporter	NA	NA	NA	NA	NA
WP_010929784.1|416466_417570_-	ChbG/HpnK family deacetylase	NA	NA	NA	NA	NA
WP_157734664.1|417525_417798_+	GtrA family protein	NA	NA	NA	NA	NA
WP_010927086.1|417757_419377_-	glycosyltransferase family 39 protein	NA	NA	NA	NA	NA
WP_003814720.1|419373_420432_-	glycosyltransferase family 2 protein	NA	I1TED8	Salmonella_phage	40.5	2.8e-59
WP_033446199.1|420561_421056_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_022997984.1|421148_422126_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929785.1|422321_423527_+	sodium/glutamate symporter	NA	NA	NA	NA	NA
WP_010929786.1|423523_425035_+	TAXI family TRAP transporter solute-binding subunit	NA	NA	NA	NA	NA
WP_003814726.1|425050_426364_-	short-chain fatty acid transporter	NA	NA	NA	NA	NA
WP_003814728.1|426554_426734_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003814730.1|427143_427878_-	DNA polymerase III subunit epsilon	NA	A0A1X9SH08	Bradyrhizobium_phage	43.8	1.4e-41
WP_010929577.1|430322_431273_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247421.1|431404_431803_-	GTP-binding protein	NA	E4ZFJ7	Streptococcus_phage	44.3	9.0e-19
WP_003814701.1|432213_432684_-	universal stress protein	NA	NA	NA	NA	NA
WP_003820700.1|432772_433117_-	TIGR01244 family phosphatase	NA	NA	NA	NA	NA
WP_010929788.1|433216_434617_-	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
WP_010929789.1|436405_436924_-	MgtC/SapB family protein	NA	G3MA03	Bacillus_virus	38.9	2.1e-12
WP_003814694.1|437034_437790_+	TerC family protein	NA	A0A0R6PEZ3	Moraxella_phage	40.8	2.9e-42
WP_003814691.1|437985_439218_+	CoA transferase	NA	NA	NA	NA	NA
WP_010929791.1|439210_439996_+	crotonase/enoyl-CoA hydratase family protein	NA	NA	NA	NA	NA
WP_003814685.1|440062_441034_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003814681.1|441044_442022_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247419.1|442147_443320_+	acyl-CoA dehydrogenase family protein	NA	NA	NA	NA	NA
WP_010929793.1|443346_444375_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_003814674.1|444440_445634_+	acetyl-CoA C-acyltransferase	NA	NA	NA	NA	NA
WP_005012067.1|447415_448366_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 6
NZ_CP010261	Bordetella pertussis strain I538 chromosome, complete genome	4107716	590420	651610	4107716	protease,transposase	uncultured_Mediterranean_phage(40.0%)	55	NA	NA
WP_005013747.1|590420_591371_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023998122.1|591867_592737_+	phosphonate ABC transporter, permease protein PhnE	NA	NA	NA	NA	NA
WP_010931496.1|592733_593555_+	phosphonate ABC transporter, permease protein PhnE	NA	NA	NA	NA	NA
WP_019247235.1|593753_594245_+	CYTH domain-containing protein	NA	NA	NA	NA	NA
WP_019247236.1|594263_595337_+	CHAD domain-containing protein	NA	NA	NA	NA	NA
WP_023853086.1|595383_596487_-	signal recognition particle-docking protein FtsY	NA	NA	NA	NA	NA
WP_003808577.1|596562_597183_+	16S rRNA (guanine(966)-N(2))-methyltransferase RsmD	NA	NA	NA	NA	NA
WP_003808574.1|597203_597713_+	pantetheine-phosphate adenylyltransferase	NA	A0A1B1IVQ3	uncultured_Mediterranean_phage	42.1	1.2e-28
WP_003808570.1|597767_598019_+	YfhL family 4Fe-4S dicluster ferredoxin	NA	A0A1B1IWY9	uncultured_Mediterranean_phage	53.4	1.6e-18
WP_010931494.1|598082_599216_+	benzoate/H(+) symporter BenE family transporter	NA	NA	NA	NA	NA
WP_003808567.1|599223_599610_-	MOSC N-terminal beta barrel domain-containing protein	NA	NA	NA	NA	NA
WP_010931493.1|599606_602126_-	AsmA family protein	NA	NA	NA	NA	NA
WP_003808563.1|602554_602893_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003808562.1|602889_603396_+	SRPBCC family protein	NA	NA	NA	NA	NA
WP_010931492.1|603457_604258_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931491.1|604368_605310_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931490.1|605403_606939_-	M81 family metallopeptidase	NA	NA	NA	NA	NA
WP_010931489.1|608618_610469_-	dipeptide ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	29.2	1.6e-17
WP_003808549.1|610472_611306_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931488.1|611305_612247_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931487.1|612498_613470_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931486.1|613611_615900_+	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
WP_003808542.1|616206_617115_+	TauD/TfdA family dioxygenase	NA	NA	NA	NA	NA
WP_010931485.1|617169_618135_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931484.1|618209_619871_+	thiamine pyrophosphate-binding protein	NA	NA	NA	NA	NA
WP_010931483.1|619942_620653_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929591.1|620801_621752_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814152.1|622450_622834_+	membrane protein	NA	NA	NA	NA	NA
WP_010927005.1|622891_623494_+	DUF2946 family protein	NA	NA	NA	NA	NA
WP_003820995.1|623511_623913_-	DoxX family protein	NA	NA	NA	NA	NA
WP_003814158.1|624046_624940_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931481.1|624936_625518_+	NUDIX hydrolase	NA	NA	NA	NA	NA
WP_003814165.1|626312_627047_+	arginyltransferase	NA	NA	NA	NA	NA
WP_010931480.1|627087_628137_+	quinone-dependent dihydroorotate dehydrogenase	NA	NA	NA	NA	NA
WP_003814172.1|628284_628863_-	TIGR01841 family phasin	NA	NA	NA	NA	NA
WP_010931479.1|629249_630227_+	tripartite tricarboxylate transporter substrate binding protein BugD	NA	NA	NA	NA	NA
WP_010931478.1|630320_634715_-	dermonecrotic toxin	NA	NA	NA	NA	NA
WP_003814178.1|634915_635764_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931477.1|635922_636735_-	competence/damage-inducible protein A	NA	NA	NA	NA	NA
WP_005015810.1|636790_637741_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931453.1|637839_638640_-	EI24 domain-containing protein	NA	NA	NA	NA	NA
WP_003814185.1|638701_639085_+	thioredoxin family protein	NA	NA	NA	NA	NA
WP_010931454.1|639096_640530_-	DEAD/DEAH box helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	34.4	1.5e-52
WP_003814188.1|640736_641066_-	AzlD domain-containing protein	NA	NA	NA	NA	NA
WP_010931455.1|641068_641818_-	AzlC family ABC transporter permease	NA	NA	NA	NA	NA
WP_010931456.1|642000_642921_+	branched-chain amino acid transaminase	NA	NA	NA	NA	NA
WP_003814195.1|642967_643180_+	zinc-finger domain-containing protein	NA	NA	NA	NA	NA
WP_010931457.1|643202_643625_+	nuclear transport factor 2 family protein	NA	NA	NA	NA	NA
WP_010931458.1|643641_644742_+	alpha/beta fold hydrolase	NA	NA	NA	NA	NA
WP_010931459.1|644838_646356_-|protease	M48 family metalloprotease	protease	NA	NA	NA	NA
WP_003814203.1|646431_647271_+	UTP--glucose-1-phosphate uridylyltransferase GalU	NA	A0A127AW70	Bacillus_phage	48.9	1.1e-66
WP_003814205.1|647292_648174_-	cytochrome c oxidase assembly protein	NA	NA	NA	NA	NA
WP_003814206.1|648255_649350_-	porin	NA	NA	NA	NA	NA
WP_076879617.1|649643_650594_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_041166340.1|650668_651610_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 7
NZ_CP010261	Bordetella pertussis strain I538 chromosome, complete genome	4107716	656934	703125	4107716	tRNA,transposase,terminase,tail	uncultured_Caudovirales_phage(18.18%)	50	NA	NA
WP_023995141.1|656934_657960_+|tRNA	tRNA dihydrouridine synthase DusB	tRNA	NA	NA	NA	NA
WP_003814221.1|658000_658240_+	DNA-binding protein	NA	NA	NA	NA	NA
WP_010931464.1|658309_659899_+	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase	NA	Q58MG4	Prochlorococcus_phage	47.2	8.7e-65
WP_010931465.1|659898_660447_+	crossover junction endodeoxyribonuclease RuvC	NA	NA	NA	NA	NA
WP_003814226.1|660527_661100_+	Holliday junction branch migration protein RuvA	NA	NA	NA	NA	NA
WP_010927008.1|661118_662030_-	complex I NDUFA9 subunit family protein	NA	NA	NA	NA	NA
WP_003814230.1|662103_663072_-	threo-3-hydroxy-L-aspartate ammonia-lyase	NA	NA	NA	NA	NA
WP_010931466.1|663194_664268_+	Holliday junction branch migration DNA helicase RuvB	NA	A0A127AWE7	Bacillus_phage	25.7	2.3e-08
WP_010931467.1|664272_666093_-	DNA helicase RecQ	NA	L7RCS0	Acanthamoeba_polyphaga_moumouvirus	35.3	3.1e-74
WP_010930800.1|666169_667120_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_033446132.1|667208_667544_+	ASCH domain-containing protein	NA	NA	NA	NA	NA
WP_003819076.1|667677_668328_+	carbonic anhydrase	NA	NA	NA	NA	NA
WP_010931468.1|668349_669768_-	amidase	NA	NA	NA	NA	NA
WP_019248554.1|669837_670593_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019247734.1|670561_671320_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010931471.1|671330_672212_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010931472.1|672228_672936_+	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	25.4	8.2e-07
WP_010931473.1|672938_673697_+	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	24.4	4.4e-14
WP_010931474.1|673906_675649_+	nitrite/sulfite reductase	NA	NA	NA	NA	NA
WP_010925795.1|675641_676166_+	DUF934 domain-containing protein	NA	NA	NA	NA	NA
WP_010931475.1|676205_677000_-	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019248926.1|677167_678241_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|678339_679290_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247378.1|679541_679748_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931451.1|679819_680431_-	S24 family peptidase	NA	NA	NA	NA	NA
WP_023853179.1|680985_681237_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_161633094.1|681229_681919_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|682175_683126_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247942.1|683765_684251_+|transposase	transposase	transposase	C7U0W1	Enterobacteria_phage	61.5	7.3e-39
WP_010931447.1|684237_685515_+|terminase	terminase large subunit	terminase	A0A1B1P9C9	Acinetobacter_phage	64.7	2.4e-150
WP_010931446.1|685517_686936_+	DUF4055 domain-containing protein	NA	R9TF43	Synechococcus_phage	42.1	2.2e-99
WP_010931445.1|686964_688020_+	hypothetical protein	NA	A0A0H5BBX3	Pseudomonas_phage	50.6	2.6e-97
WP_010931444.1|688025_688268_+	hypothetical protein	NA	A0A0H5AUE5	Pseudomonas_phage	53.2	5.6e-16
WP_010931443.1|688390_688993_+	hypothetical protein	NA	R9TF81	Synechococcus_phage	43.6	7.9e-27
WP_005012808.1|689421_690372_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931442.1|691046_691298_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247789.1|691360_691843_+	hypothetical protein	NA	A0A2H4JE38	uncultured_Caudovirales_phage	37.1	1.8e-13
WP_010931440.1|691844_692045_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931439.1|692044_692440_+	hypothetical protein	NA	A0A2D2W284	Stenotrophomonas_phage	35.0	7.8e-07
WP_010931438.1|692436_692835_+	hypothetical protein	NA	I6PCW1	Cronobacter_phage	38.0	4.2e-16
WP_010931437.1|692831_693254_+	DUF4128 domain-containing protein	NA	NA	NA	NA	NA
WP_010931436.1|693261_693762_+	HNH endonuclease	NA	A0A1I9SEX5	Klebsiella_phage	45.1	4.4e-31
WP_010931435.1|694016_694535_+|tail	phage tail protein	tail	A0A1S5R1H0	Pseudomonas_phage	38.3	5.4e-24
WP_003813412.1|694544_694874_+|tail	phage tail assembly chaperone	tail	A0A2H4J121	uncultured_Caudovirales_phage	44.0	2.9e-15
WP_010931434.1|694891_695182_+	DUF1799 domain-containing protein	NA	A0A2H4JBP7	uncultured_Caudovirales_phage	45.2	3.7e-14
WP_010931433.1|695207_697820_+|tail	phage tail tape measure protein	tail	A0A2H4J107	uncultured_Caudovirales_phage	38.6	4.9e-105
WP_010931432.1|697829_698189_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931431.1|698256_698790_+	DUF1833 family protein	NA	A5A3Q9	Burkholderia_phage	46.9	1.1e-40
WP_010931430.1|698786_699176_+	C40 family peptidase	NA	A0A0G3EYJ9	Achromobacter_phage	50.0	3.0e-35
WP_010931429.1|699168_703125_+	DUF1983 domain-containing protein	NA	A0A0B5A1N2	Achromobacter_phage	40.8	3.9e-215
>prophage 8
NZ_CP010261	Bordetella pertussis strain I538 chromosome, complete genome	4107716	709291	763221	4107716	tRNA,transposase	Planktothrix_phage(50.0%)	46	NA	NA
WP_003814636.1|709291_711022_+|tRNA	proline--tRNA ligase	tRNA	A0A2K9L3R9	Tupanvirus	29.4	4.6e-11
WP_010931419.1|711074_711503_+	tol-pal system-associated acyl-CoA thioesterase	NA	NA	NA	NA	NA
WP_003814641.1|711505_712186_+	protein TolQ	NA	NA	NA	NA	NA
WP_003814643.1|712185_712644_+	protein TolR	NA	NA	NA	NA	NA
WP_010931418.1|712680_713655_+	cell envelope integrity protein TolA	NA	NA	NA	NA	NA
WP_010931417.1|713671_714988_+	Tol-Pal system protein TolB	NA	NA	NA	NA	NA
WP_003814650.1|715019_715517_+	peptidoglycan-associated lipoprotein Pal	NA	NA	NA	NA	NA
WP_003814652.1|715603_716293_+	tol-pal system protein YbgF	NA	NA	NA	NA	NA
WP_010931416.1|716292_717342_+	iron ABC transporter permease	NA	NA	NA	NA	NA
WP_003814657.1|717338_718133_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.6	2.4e-15
WP_019247923.1|718301_718652_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247922.1|718627_719185_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_005012808.1|720314_721265_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929184.1|723402_724632_+	spore maturation protein	NA	NA	NA	NA	NA
WP_003814419.1|724634_726077_-	pyruvate kinase	NA	NA	NA	NA	NA
WP_010931414.1|726181_727327_+	glycerate kinase	NA	W6LM47	Streptococcus_phage	42.2	1.7e-41
WP_010931413.1|727358_728156_-	16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA	NA	NA	NA	NA	NA
WP_010931412.1|728180_729740_-	chaperone SurA	NA	NA	NA	NA	NA
WP_010931411.1|729736_732109_-	LPS-assembly protein LptD	NA	NA	NA	NA	NA
WP_010931410.1|732218_733322_+	phosphotransferase	NA	NA	NA	NA	NA
WP_010931409.1|733321_734014_+	nucleotidyltransferase family protein	NA	NA	NA	NA	NA
WP_003814436.1|734157_734859_+	membrane protein	NA	NA	NA	NA	NA
WP_003814437.1|734843_735221_-	4a-hydroxytetrahydrobiopterin dehydratase	NA	NA	NA	NA	NA
WP_005012067.1|735952_736903_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814441.1|737062_737935_-	oxaloacetate decarboxylase	NA	NA	NA	NA	NA
WP_003814443.1|738275_738494_+	DUF1059 domain-containing protein	NA	NA	NA	NA	NA
WP_019247242.1|738533_739913_-	aminotransferase class III-fold pyridoxal phosphate-dependent enzyme	NA	NA	NA	NA	NA
WP_010929976.1|739954_741352_-	amidase family protein	NA	NA	NA	NA	NA
WP_010927038.1|741391_743044_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.8	6.0e-16
WP_010929977.1|743047_743932_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010929978.1|743931_744873_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010929979.1|744951_746571_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929980.1|746737_747553_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814459.1|747620_748190_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005013747.1|748190_749141_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814461.1|749795_750893_+	carboxynorspermidine decarboxylase	NA	NA	NA	NA	NA
WP_003814462.1|750926_752192_+	saccharopine dehydrogenase family protein	NA	NA	NA	NA	NA
WP_010929591.1|752349_753300_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929982.1|753543_754134_+	polyisoprenoid-binding protein	NA	NA	NA	NA	NA
WP_010929983.1|754149_756594_-	TonB-dependent siderophore receptor	NA	NA	NA	NA	NA
WP_003814467.1|756713_757685_-	FecR family protein	NA	NA	NA	NA	NA
WP_023852739.1|757816_758341_+	sigma-70 family RNA polymerase sigma factor	NA	NA	NA	NA	NA
WP_005012067.1|758300_759251_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929984.1|759472_761668_-	DUF1156 domain-containing protein	NA	NA	NA	NA	NA
WP_010929985.1|761740_762169_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_005012808.1|762270_763221_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 9
NZ_CP010261	Bordetella pertussis strain I538 chromosome, complete genome	4107716	814814	886827	4107716	holin,transposase	Acinetobacter_phage(20.0%)	60	NA	NA
WP_010931070.1|814814_815765_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930050.1|815863_816520_-	DUF4136 domain-containing protein	NA	NA	NA	NA	NA
WP_010930049.1|816667_819376_+	aminopeptidase N	NA	A0A0P0IY26	Acinetobacter_phage	24.0	2.8e-15
WP_003813068.1|819385_820405_+	class 1 fructose-bisphosphatase	NA	A0A1V0SKX4	Klosneuvirus	35.7	1.5e-49
WP_041337087.1|820401_821352_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003813893.1|821450_821939_-	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	NA	NA	NA	NA	NA
WP_003813895.1|821935_822619_-	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	NA	NA	NA	NA	NA
WP_010926959.1|822648_826104_+	transcription-repair coupling factor	NA	NA	NA	NA	NA
WP_010930046.1|826139_827000_+	phosphoserine phosphatase SerB	NA	NA	NA	NA	NA
WP_010930045.1|827128_828046_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930044.1|828183_829164_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003813904.1|829223_831014_+	acetolactate synthase large subunit	NA	A0A0P0YLY7	Yellowstone_lake_phycodnavirus	26.1	2.0e-25
WP_010930042.1|831010_831787_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930041.1|831796_832315_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_003813909.1|832427_834698_-	TonB-dependent siderophore receptor	NA	NA	NA	NA	NA
WP_010930039.1|834909_837141_-	TonB-dependent siderophore receptor	NA	NA	NA	NA	NA
WP_003813915.1|837441_837771_-	DUF2818 family protein	NA	NA	NA	NA	NA
WP_019248505.1|837787_839272_-	NADH-quinone oxidoreductase subunit NuoN	NA	NA	NA	NA	NA
WP_019247436.1|839282_840785_-	NADH-quinone oxidoreductase subunit M	NA	NA	NA	NA	NA
WP_010930037.1|840781_842794_-	NADH-quinone oxidoreductase subunit L	NA	NA	NA	NA	NA
WP_003813920.1|842811_843120_-	NADH-quinone oxidoreductase subunit NuoK	NA	NA	NA	NA	NA
WP_003813921.1|843116_843764_-	NADH-quinone oxidoreductase subunit J	NA	NA	NA	NA	NA
WP_003813924.1|843781_844270_-	NADH-quinone oxidoreductase subunit NuoI	NA	NA	NA	NA	NA
WP_003813926.1|844291_845365_-	NADH-quinone oxidoreductase subunit NuoH	NA	NA	NA	NA	NA
WP_010930036.1|845364_847692_-	NADH-quinone oxidoreductase subunit G	NA	NA	NA	NA	NA
WP_003813930.1|847707_849075_-	NADH-quinone oxidoreductase subunit NuoF	NA	NA	NA	NA	NA
WP_003813932.1|849071_849566_-	NADH-quinone oxidoreductase subunit NuoE	NA	NA	NA	NA	NA
WP_010930035.1|849611_850868_-	NADH-quinone oxidoreductase subunit D	NA	NA	NA	NA	NA
WP_010926963.1|850870_851494_-	NADH-quinone oxidoreductase subunit C	NA	NA	NA	NA	NA
WP_003813941.1|851568_852045_-	NADH-quinone oxidoreductase subunit B	NA	NA	NA	NA	NA
WP_003813943.1|852081_852441_-	NADH-quinone oxidoreductase subunit A	NA	NA	NA	NA	NA
WP_010930034.1|852629_853787_-	porin	NA	NA	NA	NA	NA
WP_010929591.1|854099_855050_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247352.1|855067_855622_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003813949.1|855623_856058_+	PaaI family thioesterase	NA	NA	NA	NA	NA
WP_003813951.1|856054_856489_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003813952.1|856472_857276_-	phosphatase PAP2 family protein	NA	NA	NA	NA	NA
WP_003813954.1|857292_858108_-	metallophosphoesterase	NA	NA	NA	NA	NA
WP_019248500.1|858104_858920_-	diacylglycerol kinase	NA	NA	NA	NA	NA
WP_010930033.1|859066_859768_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003813960.1|859795_861754_-|holin	choline BCCT transporter BetT	holin	A0A2I7QNT1	Vibrio_phage	30.3	8.0e-28
WP_010931070.1|861836_862787_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930032.1|863007_863676_+	transcriptional regulator	NA	NA	NA	NA	NA
WP_010930031.1|863799_864906_+	efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
WP_010930030.1|864918_868032_+	MexW/MexI family multidrug efflux RND transporter permease subunit	NA	S5VTK5	Leptospira_phage	21.5	4.5e-57
WP_010930029.1|868028_869522_+	efflux transporter outer membrane subunit	NA	NA	NA	NA	NA
WP_010926969.1|869536_870208_+	transcriptional regulator	NA	NA	NA	NA	NA
WP_003813974.1|870251_870746_-	azurin	NA	NA	NA	NA	NA
WP_010930027.1|870886_871534_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_023853163.1|871637_873686_+	hydantoinase/oxoprolinase family protein	NA	NA	NA	NA	NA
WP_010930025.1|873682_875695_+	hydantoinase B/oxoprolinase family protein	NA	NA	NA	NA	NA
WP_010930024.1|875720_877055_+	FAD-binding oxidoreductase	NA	NA	NA	NA	NA
WP_003813981.1|877163_878156_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003813982.1|878222_880307_-	rhodanese-like domain-containing protein	NA	NA	NA	NA	NA
WP_010930023.1|880331_881303_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930022.1|881431_882463_-	succinylglutamate desuccinylase/aspartoacylase family protein	NA	NA	NA	NA	NA
WP_010930021.1|882466_883618_-	cystathionine beta-lyase	NA	NA	NA	NA	NA
WP_076879542.1|883788_884712_+	transcriptional regulator LrhA	NA	NA	NA	NA	NA
WP_003813987.1|884789_885614_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_023994644.1|885810_886827_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
>prophage 10
NZ_CP010261	Bordetella pertussis strain I538 chromosome, complete genome	4107716	894461	957542	4107716	holin,transposase	Bacillus_phage(25.0%)	54	NA	NA
WP_010930018.1|894461_896693_-|holin	choline BCCT transporter BetT	holin	NA	NA	NA	NA
WP_010930017.1|897480_897927_-	preprotein translocase subunit SecG	NA	NA	NA	NA	NA
WP_003813996.1|897948_898695_-	triose-phosphate isomerase	NA	NA	NA	NA	NA
WP_003813997.1|898838_899816_-	NAD(P)H-quinone oxidoreductase	NA	NA	NA	NA	NA
WP_010930016.1|900449_901061_+	PIN domain-containing protein	NA	K4HZX4	Acidithiobacillus_phage	32.5	3.3e-12
WP_003813999.1|901054_902272_-	threonine ammonia-lyase	NA	NA	NA	NA	NA
WP_005013747.1|902412_903363_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814000.1|903359_904079_-	lipoprotein	NA	NA	NA	NA	NA
WP_003821234.1|904199_906359_-	polyribonucleotide nucleotidyltransferase	NA	NA	NA	NA	NA
WP_003814002.1|906449_906719_-	30S ribosomal protein S15	NA	NA	NA	NA	NA
WP_003814003.1|907012_907540_+	lipoprotein	NA	NA	NA	NA	NA
WP_003814004.1|907558_908338_-	CDP-diacylglycerol--serine O-phosphatidyltransferase	NA	NA	NA	NA	NA
WP_010930015.1|908505_909522_-	ketol-acid reductoisomerase	NA	NA	NA	NA	NA
WP_003814006.1|909594_910086_-	acetolactate synthase small subunit	NA	NA	NA	NA	NA
WP_003814007.1|910096_911812_-	acetolactate synthase 3 catalytic subunit	NA	A0A0P0CDR3	Ostreococcus_lucimarinus_virus	30.3	3.1e-60
WP_005012067.1|912975_913926_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930051.1|913922_915755_-	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	26.4	1.3e-27
WP_010930052.1|916153_916813_+	thiopurine S-methyltransferase	NA	NA	NA	NA	NA
WP_023852837.1|916906_917053_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003809770.1|917161_917329_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930054.1|917340_918021_-	DUF3313 domain-containing protein	NA	NA	NA	NA	NA
WP_010930055.1|918302_919019_+	flagellar brake protein	NA	NA	NA	NA	NA
WP_010930056.1|919033_920335_-	phospholipase A	NA	NA	NA	NA	NA
WP_029444137.1|922479_925368_+	HD domain-containing protein	NA	NA	NA	NA	NA
WP_010930057.1|925591_926944_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_004568140.1|926972_927494_+	acetyl-CoA carboxylase biotin carboxyl carrier protein	NA	NA	NA	NA	NA
WP_003819989.1|927490_928945_+	carboxylase	NA	NA	NA	NA	NA
WP_023852826.1|928979_929228_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247557.1|929333_930209_+	amidohydrolase	NA	NA	NA	NA	NA
WP_010930060.1|930234_931290_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930061.1|931302_932094_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930062.1|932126_933497_+	acetyl-CoA carboxylase biotin carboxylase subunit	NA	NA	NA	NA	NA
WP_005012067.1|934673_935624_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930064.1|935676_935898_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003810832.1|936057_936270_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003810835.1|936389_937508_+	mannose-6-phosphate isomerase	NA	NA	NA	NA	NA
WP_003810839.1|938013_938265_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930066.1|938377_939328_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003810840.1|939324_939708_-	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA	NA
WP_023852913.1|939762_941577_-	ABC transporter ATP-binding protein/permease	NA	W8CYL7	Bacillus_phage	27.9	5.7e-44
WP_010930068.1|941726_942554_+	aldo/keto reductase	NA	A0A2H4PQR8	Staphylococcus_phage	47.4	1.7e-67
WP_010930069.1|942599_943580_+	aldo/keto reductase	NA	NA	NA	NA	NA
WP_003810850.1|943576_943789_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003810851.1|943785_944967_-	PepSY domain-containing protein	NA	NA	NA	NA	NA
WP_019248496.1|945130_945865_+	metallophosphoesterase	NA	A0A2H4J0P0	uncultured_Caudovirales_phage	49.2	1.9e-62
WP_010930071.1|945866_948479_-	PBP1A family penicillin-binding protein	NA	NA	NA	NA	NA
WP_003810859.1|948614_950528_-	S9 family peptidase	NA	NA	NA	NA	NA
WP_010930072.1|951143_951554_-	PaaI family thioesterase	NA	NA	NA	NA	NA
WP_003810865.1|951651_952737_+	DNA polymerase IV	NA	NA	NA	NA	NA
WP_005012067.1|952835_953786_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930088.1|953782_954757_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003821497.1|954881_955793_+	LysR family transcriptional regulator	NA	Q6JIH3	Burkholderia_virus	27.6	4.4e-05
WP_004566317.1|956069_956462_-	type II toxin-antitoxin system HicB family antitoxin	NA	A0A0R6PJ17	Moraxella_phage	45.0	4.8e-25
WP_005012808.1|956591_957542_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 11
NZ_CP010261	Bordetella pertussis strain I538 chromosome, complete genome	4107716	976964	1117214	4107716	protease,holin,tRNA,transposase	uncultured_Mediterranean_phage(17.65%)	117	NA	NA
WP_005012067.1|976964_977915_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014486062.1|977995_978907_+	cysteine synthase CysM	NA	A0A1X9I5K7	Streptococcus_phage	38.8	8.0e-47
WP_010930108.1|978967_980113_-	lytic murein transglycosylase B	NA	NA	NA	NA	NA
WP_003821521.1|980132_981047_+	histone deacetylase family protein	NA	A0A2K9KZC4	Tupanvirus	34.7	9.8e-45
WP_010930110.1|981118_981868_+	electron transfer flavoprotein subunit beta/FixA family protein	NA	NA	NA	NA	NA
WP_010930111.1|981867_982797_+	electron transfer flavoprotein subunit alpha	NA	NA	NA	NA	NA
WP_003821527.1|983040_984867_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_003813333.1|984949_985591_+	peroxiredoxin	NA	NA	NA	NA	NA
WP_170954292.1|985813_986815_+	sulfate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930112.1|988651_989716_+	sulfate ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	30.3	3.8e-24
WP_010930113.1|990513_991422_+	sulfate adenylyltransferase subunit CysD	NA	NA	NA	NA	NA
WP_023852693.1|992909_994184_+	PA0069 family radical SAM protein	NA	NA	NA	NA	NA
WP_023852686.1|994337_994718_+	hypothetical protein	NA	NA	NA	NA	NA
WP_014905652.1|994725_995598_-	EamA family transporter	NA	NA	NA	NA	NA
WP_003813315.1|995903_996284_+	50S ribosomal protein L19	NA	NA	NA	NA	NA
WP_003813314.1|996494_997220_+	CoA pyrophosphatase	NA	NA	NA	NA	NA
WP_005012067.1|997315_998266_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930118.1|998370_999420_+	NADP(H)-dependent aldo-keto reductase	NA	NA	NA	NA	NA
WP_010929632.1|999557_1000574_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010926548.1|1002082_1002655_-	chorismate lyase	NA	NA	NA	NA	NA
WP_010930119.1|1002714_1003446_+	rRNA pseudouridine synthase	NA	NA	NA	NA	NA
WP_029443805.1|1003497_1004415_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930121.1|1005222_1008402_+	efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_014486063.1|1008398_1009781_+	efflux transporter outer membrane subunit	NA	NA	NA	NA	NA
WP_010930123.1|1009850_1010102_-	GlsB/YeaQ/YmgE family stress response membrane protein	NA	NA	NA	NA	NA
WP_010930124.1|1010247_1010862_-	SCO family protein	NA	NA	NA	NA	NA
WP_019248379.1|1011048_1013163_-	M3 family metallopeptidase	NA	NA	NA	NA	NA
WP_003811948.1|1013238_1014090_-	bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD	NA	A0A249XZQ2	Enterococcus_phage	39.8	2.1e-33
WP_010930126.1|1014086_1014713_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_003817147.1|1014709_1016464_-	PAS domain S-box protein	NA	NA	NA	NA	NA
WP_010930127.1|1016756_1019462_+	pyruvate dehydrogenase (acetyl-transferring), homodimeric type	NA	NA	NA	NA	NA
WP_010930128.1|1019474_1021136_+	dihydrolipoyllysine-residue acetyltransferase	NA	NA	NA	NA	NA
WP_010930129.1|1021148_1022939_+	dihydrolipoyl dehydrogenase	NA	A0A2K5B2C5	Erysipelothrix_phage	25.2	2.4e-39
WP_003817151.1|1023160_1024336_-	FliC/FljB family flagellin	NA	NA	NA	NA	NA
WP_010929584.1|1024378_1025329_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930130.1|1025427_1026168_-	16S rRNA (uracil(1498)-N(3))-methyltransferase	NA	NA	NA	NA	NA
WP_010930131.1|1026362_1028399_+	transketolase	NA	NA	NA	NA	NA
WP_010930132.1|1028416_1029427_+	type I glyceraldehyde-3-phosphate dehydrogenase	NA	NA	NA	NA	NA
WP_010930133.1|1029544_1030738_+	phosphoglycerate kinase	NA	NA	NA	NA	NA
WP_010930134.1|1030767_1031541_-	enoyl-ACP reductase FabI	NA	NA	NA	NA	NA
WP_010930135.1|1031537_1032728_-	acetate kinase	NA	NA	NA	NA	NA
WP_003809454.1|1032753_1033692_-	phosphate acetyltransferase	NA	NA	NA	NA	NA
WP_010930136.1|1033688_1036037_-	DUF3141 domain-containing protein	NA	NA	NA	NA	NA
WP_010930137.1|1036191_1036833_-	glutathione transferase	NA	NA	NA	NA	NA
WP_023853531.1|1036936_1038070_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994624.1|1038162_1038315_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930138.1|1038346_1038895_-	DinB family protein	NA	NA	NA	NA	NA
WP_003819814.1|1038913_1039399_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_010930139.1|1039576_1040515_+	DnaJ domain-containing protein	NA	A0A0P0YMJ9	Yellowstone_lake_phycodnavirus	24.1	5.6e-11
WP_003809467.1|1040517_1040835_+	MerR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247197.1|1040880_1041825_+	AzlC family ABC transporter permease	NA	NA	NA	NA	NA
WP_010930141.1|1043505_1044156_+	molybdopterin adenylyltransferase	NA	NA	NA	NA	NA
WP_003809479.1|1044209_1044545_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930142.1|1044541_1045402_+	M23 family metallopeptidase	NA	A0A292GJG6	Xanthomonas_phage	36.1	2.6e-15
WP_003819817.1|1045418_1045700_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003809486.1|1045773_1046037_-	translation initiation factor IF-1	NA	NA	NA	NA	NA
WP_005012067.1|1046280_1047231_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930198.1|1047329_1048280_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811933.1|1048578_1049316_-	RNA polymerase sigma factor FliA	NA	NA	NA	NA	NA
WP_010930143.1|1049751_1050075_+	flagellar transcriptional regulator FlhD	NA	NA	NA	NA	NA
WP_003811929.1|1050109_1050670_+	flagellar transcriptional regulator FlhC	NA	NA	NA	NA	NA
WP_003811927.1|1050790_1051666_+	flagellar motor stator protein MotA	NA	NA	NA	NA	NA
WP_003817154.1|1051678_1052626_+	flagellar motor protein MotB	NA	NA	NA	NA	NA
WP_019247393.1|1052727_1053021_+	response regulator	NA	NA	NA	NA	NA
WP_010930144.1|1053047_1055105_+	chemotaxis protein CheA	NA	NA	NA	NA	NA
WP_003811919.1|1055119_1055620_+	chemotaxis protein CheW	NA	NA	NA	NA	NA
WP_010930145.1|1055693_1057400_+	Tar ligand binding domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	41.7	1.4e-12
WP_010930146.1|1058263_1059316_+	chemotaxis response regulator protein-glutamate methylesterase	NA	NA	NA	NA	NA
WP_003811911.1|1059368_1059758_+	chemotaxis response regulator CheY	NA	Q56AR1	Bacillus_thuringiensis_phage	33.3	5.7e-10
WP_003817162.1|1059766_1060399_+	protein phosphatase CheZ	NA	NA	NA	NA	NA
WP_010931363.1|1060498_1061515_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010930148.1|1062303_1063353_+	aldo/keto reductase	NA	NA	NA	NA	NA
WP_014486064.1|1063349_1064993_-	apolipoprotein N-acyltransferase	NA	NA	NA	NA	NA
WP_010930149.1|1064989_1065877_-	CBS domain-containing protein	NA	NA	NA	NA	NA
WP_003809396.1|1066017_1066491_-	rRNA maturation RNase YbeY	NA	NA	NA	NA	NA
WP_010930151.1|1066480_1067503_-	PhoH family protein	NA	A0A0S0MVD6	Pseudomonas_phage	45.4	8.7e-50
WP_015041211.1|1067499_1068927_-|tRNA	tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB	tRNA	NA	NA	NA	NA
WP_010931363.1|1069864_1070881_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003809411.1|1071213_1072149_-	protein translocase subunit SecF	NA	A0A1B1IVP7	uncultured_Mediterranean_phage	35.5	3.0e-41
WP_010930154.1|1072198_1074079_-	protein translocase subunit SecD	NA	NA	NA	NA	NA
WP_003809416.1|1074145_1074490_-	preprotein translocase subunit YajC	NA	A0A1B1IVR5	uncultured_Mediterranean_phage	40.4	1.0e-10
WP_010930155.1|1074634_1075771_-|tRNA	tRNA guanosine(34) transglycosylase Tgt	tRNA	A0A1B1IVQ4	uncultured_Mediterranean_phage	44.4	1.9e-85
WP_023853534.1|1075767_1076841_-|tRNA	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	tRNA	NA	NA	NA	NA
WP_003809423.1|1076998_1078435_+	D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase	NA	NA	NA	NA	NA
WP_010930157.1|1078525_1079167_+	uracil phosphoribosyltransferase	NA	NA	NA	NA	NA
WP_023853536.1|1079502_1080519_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_077598830.1|1080618_1081194_-	protein phosphatase CheZ	NA	NA	NA	NA	NA
WP_019248433.1|1081132_1083880_+	pertactin autotransporter	NA	NA	NA	NA	NA
WP_010930160.1|1083946_1085368_-	uroporphyrinogen-III C-methyltransferase	NA	NA	NA	NA	NA
WP_003809431.1|1085631_1086348_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003809432.1|1086432_1086750_+	DUF883 domain-containing protein	NA	NA	NA	NA	NA
WP_003819794.1|1086790_1087204_+|holin	phage holin family protein	holin	NA	NA	NA	NA
WP_010930161.1|1087205_1087565_+	hypothetical protein	NA	NA	NA	NA	NA
WP_023853525.1|1087607_1089152_-	4-hydroxy-3-polyprenylbenzoate decarboxylase	NA	NA	NA	NA	NA
WP_010930163.1|1089235_1090066_+	lytic transglycosylase domain-containing protein	NA	NA	NA	NA	NA
WP_010930164.1|1090100_1091255_-	pyridoxal phosphate-dependent aminotransferase	NA	NA	NA	NA	NA
WP_010930165.1|1091297_1092170_+	hypothetical protein	NA	NA	NA	NA	NA
WP_014486065.1|1092286_1094575_+	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
WP_003809441.1|1095781_1096246_+	barstar family protein	NA	NA	NA	NA	NA
WP_005013747.1|1096272_1097223_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930167.1|1097590_1098367_-	phosphate ABC transporter ATP-binding protein PstB	NA	G9BWD6	Planktothrix_phage	28.7	4.3e-17
WP_003809638.1|1098411_1099269_-	phosphate ABC transporter permease PstA	NA	NA	NA	NA	NA
WP_010930169.1|1099290_1100307_-	phosphate ABC transporter permease subunit PstC	NA	NA	NA	NA	NA
WP_014486066.1|1100441_1101482_-	phosphate ABC transporter substrate-binding protein PstS	NA	M4QHS4	Cyanophage	40.2	2.1e-51
WP_010930171.1|1101676_1103758_-	polyphosphate kinase 1	NA	NA	NA	NA	NA
WP_010930172.1|1103993_1105487_+	exopolyphosphatase	NA	NA	NA	NA	NA
WP_003809629.1|1105717_1106512_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_003819875.1|1106732_1108091_-	phosphoglucosamine mutase	NA	NA	NA	NA	NA
WP_010930173.1|1108087_1108930_-	dihydropteroate synthase	NA	A0A0B5J4J5	Pandoravirus	32.5	3.2e-26
WP_010930174.1|1108948_1110835_-|protease	ATP-dependent zinc metalloprotease FtsH	protease	M4QMW8	Micromonas_pusilla_virus	41.5	1.4e-109
WP_162096758.1|1110776_1111028_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930175.1|1111072_1111705_-	RlmE family RNA methyltransferase	NA	NA	NA	NA	NA
WP_003809618.1|1111723_1112326_+	YhbY family RNA-binding protein	NA	NA	NA	NA	NA
WP_010929591.1|1112477_1113428_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_161633091.1|1114008_1114716_+	DUF192 domain-containing protein	NA	NA	NA	NA	NA
WP_003812707.1|1115074_1116061_-	homoserine kinase	NA	NA	NA	NA	NA
WP_010930178.1|1116200_1117214_+|tRNA	tRNA dihydrouridine(20/20a) synthase DusA	tRNA	NA	NA	NA	NA
>prophage 12
NZ_CP010261	Bordetella pertussis strain I538 chromosome, complete genome	4107716	1318232	1386719	4107716	transposase	Planktothrix_phage(33.33%)	58	NA	NA
WP_005012808.1|1318232_1319183_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930283.1|1319951_1320590_-	glutathione S-transferase	NA	NA	NA	NA	NA
WP_019247793.1|1321479_1321926_+	aspartate/glutamate racemase family protein	NA	NA	NA	NA	NA
WP_010930284.1|1322007_1322709_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.4	1.3e-17
WP_003811277.1|1322709_1323477_-	high-affinity branched-chain amino acid ABC transporter ATP-binding protein LivG	NA	A0A2H4PQG7	Staphylococcus_phage	26.4	1.2e-14
WP_010930285.1|1323473_1324712_-	high-affinity branched-chain amino acid ABC transporter permease LivM	NA	NA	NA	NA	NA
WP_003811272.1|1324711_1325638_-	high-affinity branched-chain amino acid ABC transporter permease LivH	NA	NA	NA	NA	NA
WP_010930286.1|1325740_1326856_-	branched-chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_005015810.1|1326871_1327822_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930287.1|1328175_1328757_-	queuosine precursor transporter	NA	A0A2I7SAW6	Vibrio_phage	37.3	9.4e-17
WP_003811267.1|1328753_1329587_-	pyrroline-5-carboxylate reductase	NA	NA	NA	NA	NA
WP_010930288.1|1329797_1331111_+	sn-glycerol-3-phosphate ABC transporter substrate-binding protein UgpB	NA	NA	NA	NA	NA
WP_003811262.1|1331287_1332169_+	sn-glycerol-3-phosphate ABC transporter permease UgpA	NA	NA	NA	NA	NA
WP_003811259.1|1332188_1333040_+	sn-glycerol-3-phosphate ABC transporter permease UgpE	NA	NA	NA	NA	NA
WP_010930289.1|1333092_1334181_+	sn-glycerol-3-phosphate import ATP-binding protein UgpC	NA	G9BWD6	Planktothrix_phage	31.2	2.2e-19
WP_010930290.1|1334291_1335419_-	branched-chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003811244.1|1335653_1336265_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_010929584.1|1336363_1337314_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811293.1|1337535_1337913_-	DUF423 domain-containing protein	NA	NA	NA	NA	NA
WP_003811295.1|1338060_1338558_+	DUF2384 domain-containing protein	NA	NA	NA	NA	NA
WP_010930291.1|1338554_1339082_+	RES family NAD+ phosphorylase	NA	NA	NA	NA	NA
WP_003811298.1|1339215_1340031_+	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930292.1|1340043_1341225_-	alpha-hydroxy-acid oxidizing protein	NA	NA	NA	NA	NA
WP_003811301.1|1341272_1342166_-	phosphatidylserine decarboxylase	NA	NA	NA	NA	NA
WP_010930293.1|1342292_1342763_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930294.1|1342888_1343716_-	DUF3298 domain-containing protein	NA	NA	NA	NA	NA
WP_003811306.1|1343744_1344521_-	lipoate--protein ligase family protein	NA	NA	NA	NA	NA
WP_023852802.1|1344517_1344793_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930295.1|1344807_1345272_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_010930296.1|1345283_1345985_-	glutathione S-transferase N-terminal domain-containing protein	NA	NA	NA	NA	NA
WP_003811310.1|1346094_1346595_-	glutathione peroxidase	NA	Q6VZR0	Canarypox_virus	38.4	4.7e-25
WP_010930297.1|1346677_1347856_-	DUF1501 domain-containing protein	NA	NA	NA	NA	NA
WP_003811313.1|1349483_1349819_+	tetratricopeptide repeat protein	NA	NA	NA	NA	NA
WP_010930298.1|1350006_1351455_+	CoA transferase	NA	NA	NA	NA	NA
WP_023852799.1|1351512_1351857_+	arsenate reductase (glutaredoxin)	NA	A0A2H4J8T1	uncultured_Caudovirales_phage	58.4	3.0e-31
WP_003811316.1|1351963_1352503_-	peroxiredoxin	NA	NA	NA	NA	NA
WP_005012067.1|1352595_1353546_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023852768.1|1353644_1354052_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247530.1|1354284_1354716_-	YXWGXW repeat-containing protein	NA	NA	NA	NA	NA
WP_010930300.1|1354897_1355302_-	DoxX family protein	NA	NA	NA	NA	NA
WP_010930301.1|1356538_1356862_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247533.1|1356864_1357752_-	aldo/keto reductase	NA	NA	NA	NA	NA
WP_003811322.1|1357784_1358210_-	universal stress protein	NA	NA	NA	NA	NA
WP_019247534.1|1358281_1358635_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003811324.1|1358874_1359381_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930302.1|1359419_1360751_-	transcriptional regulator PtsJ	NA	NA	NA	NA	NA
WP_003811326.1|1360810_1361626_+	YggS family pyridoxal phosphate-dependent enzyme	NA	NA	NA	NA	NA
WP_010930303.1|1361622_1362477_+	pyridoxine/pyridoxal/pyridoxamine kinase	NA	NA	NA	NA	NA
WP_010930304.1|1365539_1368083_-	malto-oligosyltrehalose synthase	NA	NA	NA	NA	NA
WP_010930305.1|1369449_1371204_-	malto-oligosyltrehalose trehalohydrolase	NA	NA	NA	NA	NA
WP_010930306.1|1371200_1373321_-	glycogen debranching protein GlgX	NA	NA	NA	NA	NA
WP_010930307.1|1373325_1375521_-	1,4-alpha-glucan branching protein GlgB	NA	NA	NA	NA	NA
WP_010930308.1|1375517_1378859_-	maltose alpha-D-glucosyltransferase	NA	NA	NA	NA	NA
WP_010930208.1|1381661_1382612_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811361.1|1382677_1382857_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247449.1|1382973_1383729_-	alpha/beta fold hydrolase	NA	NA	NA	NA	NA
WP_010930310.1|1383715_1384861_-	DUF3182 family protein	NA	NA	NA	NA	NA
WP_010930208.1|1385768_1386719_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 13
NZ_CP010261	Bordetella pertussis strain I538 chromosome, complete genome	4107716	1447210	1502698	4107716	protease,transposase	Mollivirus(16.67%)	56	NA	NA
WP_005012067.1|1447210_1448161_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811846.1|1449362_1449809_-	flagellar export protein FliJ	NA	NA	NA	NA	NA
WP_019247562.1|1449801_1451277_-	flagellar protein export ATPase FliI	NA	NA	NA	NA	NA
WP_010930338.1|1451273_1452029_-	flagellar assembly protein FliH	NA	NA	NA	NA	NA
WP_003817203.1|1452021_1453032_-	flagellar motor switch protein FliG	NA	NA	NA	NA	NA
WP_010930339.1|1453021_1454698_-	flagellar M-ring protein FliF	NA	NA	NA	NA	NA
WP_010930340.1|1455010_1455343_+	flagellar hook-basal body complex protein FliE	NA	NA	NA	NA	NA
WP_010930341.1|1455356_1455752_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930342.1|1455761_1456088_-	EscU/YscU/HrcU family type III secretion system export apparatus switch protein	NA	NA	NA	NA	NA
WP_019247563.1|1456084_1456411_-	flagellar hook-length control protein FliK	NA	NA	NA	NA	NA
WP_023994685.1|1456337_1457360_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930343.1|1457356_1457707_-	flagellar protein FliT	NA	NA	NA	NA	NA
WP_010930344.1|1457754_1458183_-	flagellar export chaperone FliS	NA	NA	NA	NA	NA
WP_010930345.1|1458190_1459564_-	flagellar filament capping protein FliD	NA	NA	NA	NA	NA
WP_003817216.1|1459704_1460082_-	flagellar protein FlaG	NA	NA	NA	NA	NA
WP_010930346.1|1460344_1461652_+	bifunctional tetrahydrofolate synthase/dihydrofolate synthase	NA	NA	NA	NA	NA
WP_023852965.1|1461712_1462543_+	SPOR domain-containing protein	NA	NA	NA	NA	NA
WP_003811815.1|1462539_1463028_+	CvpA family protein	NA	NA	NA	NA	NA
WP_003811814.1|1463069_1464590_+	amidophosphoribosyltransferase	NA	A0A0M3SGR2	Mollivirus	43.7	4.8e-97
WP_003811812.1|1464633_1465110_-	disulfide bond formation protein B	NA	NA	NA	NA	NA
WP_010930348.1|1465913_1468511_-	[protein-PII] uridylyltransferase	NA	NA	NA	NA	NA
WP_003811806.1|1468540_1469362_-	type I methionyl aminopeptidase	NA	NA	NA	NA	NA
WP_003811803.1|1470088_1470838_+	30S ribosomal protein S2	NA	NA	NA	NA	NA
WP_010926570.1|1471021_1471900_+	elongation factor Ts	NA	NA	NA	NA	NA
WP_010930349.1|1471997_1472714_+	UMP kinase	NA	NA	NA	NA	NA
WP_003811796.1|1472728_1473289_+	ribosome recycling factor	NA	NA	NA	NA	NA
WP_010930350.1|1473455_1474220_+	di-trans,poly-cis-decaprenylcistransferase	NA	R9W0U9	Flavobacterium_phage	36.1	1.7e-18
WP_010930351.1|1474239_1475097_+	phosphatidate cytidylyltransferase	NA	NA	NA	NA	NA
WP_003811788.1|1475093_1476293_+	1-deoxy-D-xylulose-5-phosphate reductoisomerase	NA	NA	NA	NA	NA
WP_010930352.1|1476332_1477667_+|protease	RIP metalloprotease RseP	protease	NA	NA	NA	NA
WP_010930353.1|1477719_1480056_+	outer membrane protein assembly factor BamA	NA	NA	NA	NA	NA
WP_003811782.1|1480181_1480745_+	OmpH family outer membrane protein	NA	NA	NA	NA	NA
WP_010930354.1|1480753_1481845_+	UDP-3-O-(3-hydroxymyristoyl)glucosamine N-acyltransferase	NA	NA	NA	NA	NA
WP_003811776.1|1481916_1482372_+	3-hydroxyacyl-ACP dehydratase FabZ	NA	NA	NA	NA	NA
WP_010930355.1|1482372_1483167_+	acyl-ACP--UDP-N-acetylglucosamine O-acyltransferase	NA	NA	NA	NA	NA
WP_010930356.1|1483163_1484345_+	lipid-A-disaccharide synthase	NA	NA	NA	NA	NA
WP_003811770.1|1484331_1484937_+	ribonuclease HII	NA	G9E3X7	Emiliania_huxleyi_virus	40.2	8.8e-26
WP_003811768.1|1484933_1485707_+	RNA methyltransferase	NA	NA	NA	NA	NA
WP_010930357.1|1485718_1486546_-	kinase/pyrophosphorylase	NA	NA	NA	NA	NA
WP_010930358.1|1486707_1489071_+	phosphoenolpyruvate synthase	NA	A0A1V0SGR7	Hokovirus	35.9	2.2e-165
WP_010930359.1|1489138_1489858_-	glutamine amidotransferase	NA	NA	NA	NA	NA
WP_003811761.1|1489981_1490407_+	NfeD family protein	NA	NA	NA	NA	NA
WP_005012067.1|1490441_1491392_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811759.1|1491509_1492436_+	paraslipin	NA	NA	NA	NA	NA
WP_010930360.1|1492501_1493659_+	GGDEF domain-containing protein	NA	A0A127AWB9	Bacillus_phage	36.2	2.3e-14
WP_003811754.1|1493639_1494107_-	SsrA-binding protein SmpB	NA	W5RAM5	Staphylococcus_phage	45.1	6.2e-27
WP_010930800.1|1494254_1495205_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811752.1|1495221_1495656_+	type II toxin-antitoxin system RatA family toxin	NA	NA	NA	NA	NA
WP_003811750.1|1495645_1495996_+	RnfH family protein	NA	NA	NA	NA	NA
WP_003811748.1|1496192_1497347_+	acyl-CoA dehydrogenase family protein	NA	NA	NA	NA	NA
WP_003811746.1|1497343_1498516_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003811743.1|1498563_1499457_+	3-hydroxyisobutyrate dehydrogenase	NA	NA	NA	NA	NA
WP_003811741.1|1499502_1499940_+	PaaI family thioesterase	NA	NA	NA	NA	NA
WP_010930362.1|1499999_1500689_+	VIT family protein	NA	NA	NA	NA	NA
WP_010930363.1|1500698_1501649_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_076879624.1|1501747_1502698_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 14
NZ_CP010261	Bordetella pertussis strain I538 chromosome, complete genome	4107716	1597395	1665481	4107716	tRNA,transposase	Streptococcus_virus(11.11%)	59	NA	NA
WP_010930416.1|1597395_1597884_+|tRNA	Cys-tRNA(Pro) deacylase	tRNA	NA	NA	NA	NA
WP_019248504.1|1598001_1598580_+	DJ-1/PfpI family protein	NA	NA	NA	NA	NA
WP_010930418.1|1598685_1599054_+	ribbon-helix-helix domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|1599152_1600103_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994932.1|1600109_1601222_-	D-alanyl-D-alanine endopeptidase	NA	NA	NA	NA	NA
WP_010930419.1|1601908_1603111_+	MFS transporter	NA	NA	NA	NA	NA
WP_004568212.1|1603146_1603293_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930420.1|1603314_1605975_+	PD-(D/E)XK nuclease family protein	NA	NA	NA	NA	NA
WP_010930421.1|1605987_1609392_+	UvrD-helicase domain-containing protein	NA	NA	NA	NA	NA
WP_023995689.1|1610059_1612285_+	DNA polymerase III subunit gamma/tau	NA	A0A1U9WR94	Streptococcus_virus	38.5	1.2e-43
WP_010930423.1|1612331_1612658_+	YbaB/EbfC family nucleoid-associated protein	NA	NA	NA	NA	NA
WP_010930424.1|1612708_1613317_+	recombination protein RecR	NA	NA	NA	NA	NA
WP_005013747.1|1613415_1614366_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930425.1|1614435_1615200_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930426.1|1615196_1615796_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930427.1|1615899_1616751_-	neutral zinc metallopeptidase	NA	A0A1I9SA48	Rhodococcus_phage	35.3	7.0e-37
WP_010928449.1|1616810_1617437_+	threonylcarbamoyl-AMP synthase	NA	NA	NA	NA	NA
WP_005012067.1|1617433_1618384_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019249265.1|1618482_1619595_-	DUF1513 domain-containing protein	NA	NA	NA	NA	NA
WP_019248041.1|1619584_1620586_-	imelysin family protein	NA	NA	NA	NA	NA
WP_019247498.1|1620691_1622203_-	c-type cytochrome	NA	NA	NA	NA	NA
WP_023853587.1|1622199_1623504_-	imelysin	NA	NA	NA	NA	NA
WP_010930431.1|1623615_1624176_-	membrane protein	NA	NA	NA	NA	NA
WP_010930432.1|1624443_1624998_+	NAD(P)H-dependent oxidoreductase	NA	A0A2P0ZL82	Lactobacillus_phage	32.0	1.7e-15
WP_010930433.1|1625453_1625669_-	dodecin domain-containing protein	NA	NA	NA	NA	NA
WP_033446228.1|1625923_1628521_+	DNA mismatch repair protein MutS	NA	A0A1V0SDQ0	Indivirus	22.6	1.5e-21
WP_010930435.1|1628517_1629705_+	cupin domain-containing protein	NA	NA	NA	NA	NA
WP_010930436.1|1630363_1630978_+	serotype 3 fimbrial subunit	NA	NA	NA	NA	NA
WP_010930437.1|1631066_1632194_-	outer membrane protein assembly factor BamC	NA	NA	NA	NA	NA
WP_033446216.1|1632205_1633111_-	4-hydroxy-tetrahydrodipicolinate synthase	NA	NA	NA	NA	NA
WP_005012067.1|1634003_1634954_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930439.1|1635135_1635888_+	glutamine ABC transporter substrate-binding protein GlnH	NA	NA	NA	NA	NA
WP_003811112.1|1635956_1636616_+	glutamine ABC transporter permease GlnP	NA	NA	NA	NA	NA
WP_003811113.1|1636612_1637341_+	glutamine ABC transporter ATP-binding protein GlnQ	NA	G9BWD6	Planktothrix_phage	39.3	3.3e-35
WP_010930440.1|1637353_1639633_-	bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase	NA	A0A1B1IUF0	uncultured_Mediterranean_phage	32.1	5.9e-06
WP_010930441.1|1639657_1639861_-	DNA-directed RNA polymerase subunit omega	NA	NA	NA	NA	NA
WP_010930442.1|1639902_1640535_-	guanylate kinase	NA	A0A218KC48	Bacillus_phage	33.9	2.4e-13
WP_010930443.1|1640670_1641588_-	c-type cytochrome	NA	NA	NA	NA	NA
WP_010930444.1|1641584_1642298_-	c-type cytochrome	NA	NA	NA	NA	NA
WP_003811135.1|1642535_1643306_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_003811137.1|1643310_1643910_-	C40 family peptidase	NA	A0A0A8WF62	Clostridium_phage	41.6	1.4e-20
WP_003811138.1|1644154_1645645_+	AMP nucleosidase	NA	NA	NA	NA	NA
WP_010926696.1|1645703_1645988_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010930445.1|1646125_1646281_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003811148.1|1646553_1647480_-	YicC family protein	NA	NA	NA	NA	NA
WP_003811149.1|1647616_1648357_+	ribonuclease PH	NA	NA	NA	NA	NA
WP_010930446.1|1648523_1649900_-	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_003811152.1|1650081_1650987_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930448.1|1652638_1654441_-	EAL domain-containing protein	NA	NA	NA	NA	NA
WP_010930449.1|1654567_1655209_+	RdgB/HAM1 family non-canonical purine NTP pyrophosphatase	NA	NA	NA	NA	NA
WP_005012808.1|1655307_1656258_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930450.1|1656279_1657500_+	oxygen-independent coproporphyrinogen III oxidase-like protein	NA	NA	NA	NA	NA
WP_003811164.1|1657685_1659098_+	type I glutamate--ammonia ligase	NA	NA	NA	NA	NA
WP_003811167.1|1659161_1660229_+	PAS domain-containing protein	NA	Q8QKV7	Ectocarpus_siliculosus_virus	23.5	1.1e-05
WP_010930451.1|1660228_1661716_+	nitrogen regulation protein NR(I)	NA	NA	NA	NA	NA
WP_010930452.1|1661725_1662670_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811176.1|1662829_1663528_+	pirin family protein	NA	NA	NA	NA	NA
WP_010930453.1|1663605_1664511_+	pirin family protein	NA	NA	NA	NA	NA
WP_005012067.1|1664530_1665481_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 15
NZ_CP010261	Bordetella pertussis strain I538 chromosome, complete genome	4107716	1701430	1757021	4107716	transposase	Brazilian_cedratvirus(25.0%)	47	NA	NA
WP_005013747.1|1701430_1702381_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930486.1|1702439_1703213_+	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_014486074.1|1703205_1704762_+	LTA synthase family protein	NA	NA	NA	NA	NA
WP_005013747.1|1704758_1705709_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003810741.1|1707035_1707638_-	TetR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003810743.1|1707877_1708579_-	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
WP_003816696.1|1708572_1709355_-	ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	25.8	2.0e-09
WP_005012808.1|1709539_1710490_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930483.1|1710588_1711326_-	TerC family protein	NA	A0A0S4KZH7	Pseudomonas_phage	46.6	4.1e-41
WP_010926609.1|1711515_1712274_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930482.1|1712320_1713310_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930481.1|1713487_1714456_-	transporter	NA	NA	NA	NA	NA
WP_010930480.1|1715995_1716964_+	AAA family ATPase	NA	NA	NA	NA	NA
WP_010930479.1|1716972_1717914_+	DUF58 domain-containing protein	NA	NA	NA	NA	NA
WP_010930478.1|1718387_1719398_+	VWA domain-containing protein	NA	NA	NA	NA	NA
WP_010930477.1|1719388_1720903_+	VWA domain-containing protein	NA	NA	NA	NA	NA
WP_010930476.1|1720899_1722246_+	BatD family protein	NA	NA	NA	NA	NA
WP_010930475.1|1722248_1723283_+	haloacid dehalogenase-like hydrolase	NA	NA	NA	NA	NA
WP_023852967.1|1723332_1724958_+	arylsulfatase	NA	A0A2P0VMN7	Tetraselmis_virus	52.2	2.0e-149
WP_005012067.1|1725510_1726461_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930487.1|1726565_1727513_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247865.1|1727566_1729381_-	sensor histidine kinase	NA	NA	NA	NA	NA
WP_010930489.1|1729373_1730048_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_023995112.1|1730177_1733252_+	autotransporter SphB2	NA	NA	NA	NA	NA
WP_019247905.1|1733265_1733565_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010930492.1|1733879_1734503_-	glutathione S-transferase family protein	NA	NA	NA	NA	NA
WP_010930493.1|1734746_1735616_+	TauD/TfdA family dioxygenase	NA	NA	NA	NA	NA
WP_010930494.1|1735593_1736538_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247909.1|1736623_1737550_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019247910.1|1737662_1738442_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930497.1|1738432_1739629_-	alpha-hydroxy-acid oxidizing protein	NA	NA	NA	NA	NA
WP_010930498.1|1739659_1740610_-	fumarylacetoacetate hydrolase family protein	NA	NA	NA	NA	NA
WP_010930499.1|1740831_1741521_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930500.1|1741585_1742341_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930501.1|1742392_1743385_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930502.1|1743394_1744348_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811538.1|1744463_1745426_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019249376.1|1746827_1747256_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|1747252_1748203_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_170954298.1|1748496_1749234_-	arsenical resistance protein ArsH	NA	A0A2H4J5V6	uncultured_Caudovirales_phage	68.2	1.3e-87
WP_010930504.1|1749657_1750845_-	MFS transporter	NA	NA	NA	NA	NA
WP_019249653.1|1750848_1751229_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010930506.1|1752948_1753920_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930507.1|1753933_1754647_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930508.1|1754651_1755569_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811452.1|1755675_1755972_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929588.1|1756070_1757021_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 16
NZ_CP010261	Bordetella pertussis strain I538 chromosome, complete genome	4107716	1960405	2031163	4107716	tRNA,transposase	Faecalibacterium_phage(14.29%)	57	NA	NA
WP_005012067.1|1960405_1961356_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930697.1|1961437_1961986_-	OmpA family protein	NA	NA	NA	NA	NA
WP_010930698.1|1961988_1962327_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930699.1|1962721_1965313_-	bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase	NA	NA	NA	NA	NA
WP_029443737.1|1965379_1966123_+	3'-5' exonuclease	NA	A0A2K9V2V7	Faecalibacterium_phage	31.8	4.3e-06
WP_003810206.1|1966135_1966522_+	nucleotide pyrophosphohydrolase	NA	NA	NA	NA	NA
WP_003810207.1|1966528_1966819_-	antibiotic biosynthesis monooxygenase	NA	NA	NA	NA	NA
WP_010930701.1|1966954_1967254_+	YciI family protein	NA	NA	NA	NA	NA
WP_010930702.1|1967322_1968225_+	EamA family transporter	NA	NA	NA	NA	NA
WP_010930703.1|1968228_1968999_+	anion permease	NA	NA	NA	NA	NA
WP_019248436.1|1969384_1969834_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012808.1|1969901_1970852_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010926318.1|1971213_1972125_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_023853568.1|1972350_1973868_+	succinate CoA transferase	NA	NA	NA	NA	NA
WP_010930705.1|1975099_1976062_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019248843.1|1976150_1976399_+	DUF1127 domain-containing protein	NA	NA	NA	NA	NA
WP_047122782.1|1982956_1983400_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003810239.1|1983464_1983737_-	N-acetyltransferase	NA	NA	NA	NA	NA
WP_010930706.1|1983733_1984681_-	3-hydroxybutyryl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_010930707.1|1984862_1986257_+	amidase family protein	NA	NA	NA	NA	NA
WP_003810249.1|1986279_1986675_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930708.1|1986671_1987931_-	glutamate-5-semialdehyde dehydrogenase	NA	A0A1X9I5D4	Streptococcus_phage	45.7	1.1e-91
WP_003818514.1|1988052_1989108_-	DNA polymerase III subunit delta	NA	NA	NA	NA	NA
WP_003810254.1|1989110_1989770_-	lipoprotein	NA	NA	NA	NA	NA
WP_003818515.1|1989785_1992443_-|tRNA	leucine--tRNA ligase	tRNA	A0A2H4PQS0	Staphylococcus_phage	39.0	3.3e-173
WP_010930709.1|1992520_1993723_-	MFS transporter	NA	NA	NA	NA	NA
WP_003810260.1|1993719_1994232_-	MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247822.1|1994354_1994792_-	HU family DNA-binding protein	NA	NA	NA	NA	NA
WP_010931070.1|1995068_1996019_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_062826579.1|1996117_1997068_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930710.1|1997321_1999127_+	STAS domain-containing protein	NA	A0A2H4J153	uncultured_Caudovirales_phage	27.5	2.2e-19
WP_010930711.1|1999240_1999408_-	50S ribosomal protein L33	NA	NA	NA	NA	NA
WP_003810297.1|1999471_1999708_-	50S ribosomal protein L28	NA	NA	NA	NA	NA
WP_010930712.1|2000076_2001276_-	multidrug effflux MFS transporter	NA	NA	NA	NA	NA
WP_010929591.1|2002791_2003742_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003818523.1|2004193_2005195_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003810306.1|2005367_2006225_+	proline/glycine betaine ABC transporter permease	NA	NA	NA	NA	NA
WP_003810308.1|2006221_2007484_+	glycine betaine/L-proline ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	36.6	6.8e-28
WP_003818524.1|2007584_2007959_+	tautomerase family protein	NA	NA	NA	NA	NA
WP_010930713.1|2008031_2009219_+	acetyl-CoA C-acyltransferase family protein	NA	NA	NA	NA	NA
WP_010930714.1|2009303_2010074_+	spermidine synthase	NA	NA	NA	NA	NA
WP_010930715.1|2010187_2010952_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930716.1|2010902_2012204_+	malonyl-CoA decarboxylase family protein	NA	NA	NA	NA	NA
WP_010930717.1|2012200_2013007_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003818532.1|2014751_2015723_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003818533.1|2015879_2016392_+	superoxide dismutase family protein	NA	Q9MC02	Salmonella_phage	52.3	1.8e-43
WP_010930718.1|2016550_2017525_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930719.1|2018525_2019320_+	ABC transporter ATP-binding protein	NA	A0A1V0SE00	Indivirus	25.7	5.1e-05
WP_003818535.1|2019345_2020152_-	TOBE domain-containing protein	NA	NA	NA	NA	NA
WP_003810329.1|2020262_2020853_+	DUF4136 domain-containing protein	NA	NA	NA	NA	NA
WP_010930720.1|2020863_2022042_+	patatin-like phospholipase family protein	NA	NA	NA	NA	NA
WP_010930721.1|2022144_2022519_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_019248531.1|2022771_2024103_+	efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
WP_019247651.1|2024169_2027400_+	multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_003810344.1|2028890_2029637_+	pyridoxine 5'-phosphate synthase	NA	NA	NA	NA	NA
WP_010930724.1|2029721_2030183_+	holo-ACP synthase	NA	NA	NA	NA	NA
WP_005015810.1|2030212_2031163_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 17
NZ_CP010261	Bordetella pertussis strain I538 chromosome, complete genome	4107716	2039573	2092813	4107716	transposase	Erysipelothrix_phage(33.33%)	46	NA	NA
WP_010930730.1|2039573_2040524_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930731.1|2041394_2042267_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010930732.1|2042344_2043484_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930733.1|2043842_2045099_+	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA	NA
WP_003816691.1|2045104_2045632_+	aromatic-ring-hydroxylating dioxygenase subunit beta	NA	NA	NA	NA	NA
WP_003816690.1|2045636_2046455_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003816687.1|2046454_2047177_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930735.1|2047198_2047513_+	2Fe-2S iron-sulfur cluster binding domain-containing protein	NA	NA	NA	NA	NA
WP_010930736.1|2047530_2048679_+	CoA transferase	NA	NA	NA	NA	NA
WP_010930737.1|2048709_2049585_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003816680.1|2049581_2050901_-	AMP-binding protein	NA	NA	NA	NA	NA
WP_014486081.1|2050973_2052170_-	acetyl-CoA acetyltransferase	NA	NA	NA	NA	NA
WP_010930739.1|2052180_2053668_-	hydroxymethylglutaryl-CoA synthase family protein	NA	NA	NA	NA	NA
WP_062826582.1|2056262_2057162_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_023852887.1|2057299_2058265_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_005015810.1|2058363_2059314_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|2059535_2060486_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812024.1|2060482_2060785_-	SelT/SelW/SelH family protein	NA	NA	NA	NA	NA
WP_003812026.1|2060944_2061349_+	group III truncated hemoglobin	NA	NA	NA	NA	NA
WP_010930743.1|2061341_2062568_+	NnrS family protein	NA	NA	NA	NA	NA
WP_003812030.1|2062564_2063011_+	membrane protein	NA	NA	NA	NA	NA
WP_003812032.1|2063080_2063863_+	exodeoxyribonuclease III	NA	NA	NA	NA	NA
WP_010930744.1|2063904_2065410_+	M81 family metallopeptidase	NA	NA	NA	NA	NA
WP_019247851.1|2065695_2066529_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930745.1|2067966_2068788_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_010930746.1|2068806_2069661_-	polysaccharide deacetylase	NA	NA	NA	NA	NA
WP_003812044.1|2069664_2070636_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019247855.1|2071320_2071497_+	winged helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_005013747.1|2071982_2072933_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812172.1|2074070_2074367_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247707.1|2074541_2075894_+	glutathione-disulfide reductase	NA	A0A2K5B2C5	Erysipelothrix_phage	27.6	2.9e-45
WP_010930153.1|2076036_2077053_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010930748.1|2079032_2080046_-	pyridoxamine 5'-phosphate oxidase family protein	NA	NA	NA	NA	NA
WP_010930749.1|2080132_2081038_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003812179.1|2081194_2081539_+	exported protein	NA	NA	NA	NA	NA
WP_010930750.1|2081696_2082155_+	(2Fe-2S)-binding protein	NA	NA	NA	NA	NA
WP_010930751.1|2082168_2084385_+	xanthine dehydrogenase family protein molybdopterin-binding subunit	NA	NA	NA	NA	NA
WP_003812183.1|2084381_2085443_+	XdhC family protein	NA	NA	NA	NA	NA
WP_010930752.1|2085471_2086446_+	AraC family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930753.1|2086397_2087216_-	hypothetical protein	NA	A0A1B1INV8	uncultured_Mediterranean_phage	28.8	2.3e-16
WP_003812191.1|2087228_2087837_-	LON peptidase substrate-binding domain-containing protein	NA	NA	NA	NA	NA
WP_010930754.1|2088011_2088407_+	VOC family protein	NA	NA	NA	NA	NA
WP_010930755.1|2088425_2089865_+	MFS transporter	NA	A0A0M3UL24	Mycobacterium_phage	37.4	7.4e-55
WP_003812199.1|2089893_2090241_+	GFA family protein	NA	NA	NA	NA	NA
WP_010929577.1|2090259_2091210_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|2091862_2092813_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 18
NZ_CP010261	Bordetella pertussis strain I538 chromosome, complete genome	4107716	2113506	2164807	4107716	protease,tRNA,transposase	Klosneuvirus(22.22%)	49	NA	NA
WP_005012067.1|2113506_2114457_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_162268681.1|2114474_2114615_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930769.1|2115429_2115789_-	CidA/LrgA family protein	NA	NA	NA	NA	NA
WP_010930770.1|2115776_2117213_-	dethiobiotin synthase	NA	NA	NA	NA	NA
WP_010930771.1|2117209_2117863_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_010930772.1|2117859_2119053_-	8-amino-7-oxononanoate synthase	NA	NA	NA	NA	NA
WP_010930773.1|2119156_2120431_+	adenosylmethionine--8-amino-7-oxononanoate transaminase	NA	A0A1V0SKB7	Klosneuvirus	28.9	9.6e-14
WP_005012067.1|2120427_2121378_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930774.1|2121544_2122519_+	membrane protein	NA	NA	NA	NA	NA
WP_003810379.1|2122515_2122659_+	cbb3-type cytochrome oxidase assembly protein CcoS	NA	NA	NA	NA	NA
WP_003810383.1|2124280_2124943_+	cytochrome-c oxidase, cbb3-type subunit II	NA	NA	NA	NA	NA
WP_003818560.1|2124945_2125122_+	cytochrome oxidase	NA	NA	NA	NA	NA
WP_010930775.1|2125118_2126057_+	cytochrome-c oxidase, cbb3-type subunit III	NA	NA	NA	NA	NA
WP_010930776.1|2126148_2127639_+	cytochrome c oxidase accessory protein CcoG	NA	NA	NA	NA	NA
WP_010930777.1|2127724_2127877_+	lipoprotein	NA	NA	NA	NA	NA
WP_010930778.1|2127890_2128130_+	membrane protein	NA	NA	NA	NA	NA
WP_010930779.1|2128225_2128969_+	sulfite exporter TauE/SafE family protein	NA	NA	NA	NA	NA
WP_010930780.1|2129001_2129502_+	N-acetyltransferase	NA	NA	NA	NA	NA
WP_170954295.1|2129564_2130524_+	ATP-binding cassette domain-containing protein	NA	A0A2H4PQG7	Staphylococcus_phage	33.6	1.7e-23
WP_003810400.1|2130520_2131282_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010930782.1|2131297_2132383_-	AI-2E family transporter	NA	NA	NA	NA	NA
WP_005013747.1|2132582_2133533_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|2133631_2134582_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_047122784.1|2134541_2134955_-	transcriptional regulator	NA	A0A222YXG1	Escherichia_phage	59.0	3.8e-36
WP_003816708.1|2135239_2135539_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930783.1|2135948_2138231_-	RNA polymerase sigma factor RpoD	NA	A0A2I7SAT0	Vibrio_phage	30.1	3.2e-36
WP_124740709.1|2138696_2138891_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930784.1|2138916_2140947_-	DNA primase	NA	A0A0K1LMQ9	Caulobacter_phage	41.9	1.0e-65
WP_006218592.1|2140966_2141179_-	30S ribosomal protein S21	NA	NA	NA	NA	NA
WP_003810720.1|2141456_2141996_-	phosphoribosyltransferase	NA	NA	NA	NA	NA
WP_023852902.1|2142109_2143405_-	adenylosuccinate synthase	NA	A0A160ER07	Powai_lake_megavirus	33.5	3.0e-63
WP_010930786.1|2143481_2144639_-	ATP phosphoribosyltransferase regulatory subunit	NA	NA	NA	NA	NA
WP_010930787.1|2144822_2145722_-|protease	protease modulator HflC	protease	NA	NA	NA	NA
WP_010930788.1|2145740_2147045_-|protease	FtsH protease activity modulator HflK	protease	NA	NA	NA	NA
WP_010930789.1|2147010_2148117_-	GTPase HflX	NA	NA	NA	NA	NA
WP_003810707.1|2148204_2148441_-	RNA chaperone Hfq	NA	NA	NA	NA	NA
WP_010930790.1|2148579_2149650_-	histidinol-phosphate transaminase	NA	A0A1X6WGT4	Pacmanvirus	25.7	2.5e-15
WP_003810703.1|2149653_2151009_-	ribosome biogenesis GTPase Der	NA	NA	NA	NA	NA
WP_003810701.1|2151035_2152196_-	outer membrane protein assembly factor BamB	NA	NA	NA	NA	NA
WP_010930791.1|2152198_2152837_-	tetratricopeptide repeat protein	NA	NA	NA	NA	NA
WP_023995843.1|2152838_2154125_-|tRNA	histidine--tRNA ligase	tRNA	NA	NA	NA	NA
WP_010930793.1|2154183_2155479_-	flavodoxin-dependent (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase	NA	NA	NA	NA	NA
WP_003810693.1|2155485_2155992_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_004568542.1|2155988_2157137_-	23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN	NA	NA	NA	NA	NA
WP_003810689.1|2157164_2157590_-	nucleoside-diphosphate kinase	NA	D2E8E1	Anguillid_herpesvirus	43.2	2.1e-21
WP_010930794.1|2157912_2160795_+|tRNA	valine--tRNA ligase	tRNA	A0A1V0SK04	Klosneuvirus	37.1	3.7e-138
WP_023852900.1|2160887_2161643_-	MipA/OmpV family protein	NA	NA	NA	NA	NA
WP_010930796.1|2162408_2163758_+	two-component sensor histidine kinase	NA	NA	NA	NA	NA
WP_076879566.1|2163856_2164807_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 19
NZ_CP010261	Bordetella pertussis strain I538 chromosome, complete genome	4107716	2201056	2266605	4107716	protease,tRNA,transposase	Lake_Baikal_phage(20.0%)	58	NA	NA
WP_010929577.1|2201056_2202007_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930573.1|2202207_2203017_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_005013747.1|2203141_2204092_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930572.1|2204088_2204982_-	methylglyoxal synthase	NA	NA	NA	NA	NA
WP_003812452.1|2205106_2205301_-	Fe-S cluster assembly protein IscX	NA	NA	NA	NA	NA
WP_003812453.1|2205300_2205642_-	ISC system 2Fe-2S type ferredoxin	NA	NA	NA	NA	NA
WP_010930571.1|2205651_2207514_-	Fe-S protein assembly chaperone HscA	NA	A0A0N9QXN8	Chrysochromulina_ericina_virus	42.4	3.0e-101
WP_003812456.1|2207643_2208156_-	Fe-S protein assembly co-chaperone HscB	NA	NA	NA	NA	NA
WP_003812458.1|2208158_2208482_-	iron-sulfur cluster assembly protein IscA	NA	A0A2H4N7N5	Lake_Baikal_phage	52.8	6.8e-25
WP_003812460.1|2208483_2208894_-	Fe-S cluster assembly scaffold IscU	NA	A0A218MKD1	uncultured_virus	79.0	7.5e-53
WP_010930570.1|2208931_2210143_-	IscS subfamily cysteine desulfurase	NA	NA	NA	NA	NA
WP_003812463.1|2210160_2210673_-	Fe-S cluster assembly transcriptional regulator IscR	NA	NA	NA	NA	NA
WP_010930569.1|2210888_2211380_-	low molecular weight phosphotyrosine protein phosphatase	NA	NA	NA	NA	NA
WP_010930568.1|2211632_2213669_-	excinuclease ABC subunit UvrB	NA	NA	NA	NA	NA
WP_019247244.1|2213746_2214949_+	aspartate/tyrosine/aromatic aminotransferase	NA	NA	NA	NA	NA
WP_010930566.1|2215077_2215728_+	transcriptional repressor LexA	NA	A0A2H4JG58	uncultured_Caudovirales_phage	50.7	3.3e-10
WP_005012067.1|2217285_2218236_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247934.1|2218806_2219019_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247935.1|2219036_2219768_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003812478.1|2219802_2220444_-	CoA transferase subunit B	NA	NA	NA	NA	NA
WP_010930565.1|2220436_2221105_-	3-oxoacid CoA-transferase subunit A	NA	NA	NA	NA	NA
WP_010930564.1|2223317_2224094_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930563.1|2224115_2225273_-	thiolase	NA	NA	NA	NA	NA
WP_003812491.1|2225269_2225701_-	OB-fold domain-containing protein	NA	NA	NA	NA	NA
WP_015063637.1|2225697_2226501_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010930561.1|2226514_2226916_-	MaoC family dehydratase	NA	NA	NA	NA	NA
WP_010930560.1|2226982_2227954_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930559.1|2228019_2229243_-	CoA transferase	NA	NA	NA	NA	NA
WP_019247936.1|2229470_2230421_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930557.1|2230544_2232998_-	endopeptidase La	NA	A0A0R6PGP8	Moraxella_phage	52.0	1.5e-220
WP_010930556.1|2233186_2234491_-|protease	ATP-dependent Clp protease ATP-binding subunit ClpX	protease	G3M9Z9	Bacillus_virus	53.8	3.2e-129
WP_003812508.1|2234595_2235249_-	ATP-dependent Clp endopeptidase proteolytic subunit ClpP	NA	A0A223W000	Agrobacterium_phage	57.5	6.8e-56
WP_010930555.1|2235251_2236562_-	trigger factor	NA	NA	NA	NA	NA
WP_010930554.1|2236758_2237319_+	TIGR00645 family protein	NA	K4K6D8	Caulobacter_phage	33.7	1.0e-23
WP_010930553.1|2237430_2237631_-	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	64.4	7.4e-14
WP_003812519.1|2237976_2238543_-	DUF924 family protein	NA	NA	NA	NA	NA
WP_010930551.1|2238626_2238830_-	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	62.1	1.6e-16
WP_003812524.1|2239136_2239457_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003812526.1|2239498_2239780_-	membrane protein	NA	NA	NA	NA	NA
WP_010930550.1|2239854_2241111_-	autotransporter Phg	NA	NA	NA	NA	NA
WP_010930549.1|2241493_2241823_+	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
WP_003812536.1|2243393_2244215_+	2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase	NA	NA	NA	NA	NA
WP_010930548.1|2244214_2245354_+	succinyl-diaminopimelate desuccinylase	NA	NA	NA	NA	NA
WP_019247938.1|2245360_2246257_+	50S ribosomal protein L3 N(5)-glutamine methyltransferase	NA	NA	NA	NA	NA
WP_010930546.1|2246253_2248179_+	ATP-binding cassette domain-containing protein	NA	A0A2K9L0W2	Tupanvirus	31.8	1.1e-66
WP_010926400.1|2248538_2251151_+	TonB-dependent receptor	NA	NA	NA	NA	NA
WP_003812546.1|2251203_2253504_-	UvrD-helicase domain-containing protein	NA	A7KV33	Bacillus_phage	35.9	9.9e-110
WP_003812548.1|2253500_2254709_-	fatty acid desaturase	NA	NA	NA	NA	NA
WP_010930545.1|2254970_2255345_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|2255341_2256292_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_076879626.1|2256390_2258385_-	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	33.3	4.4e-21
WP_010930543.1|2258444_2259410_+	bifunctional riboflavin kinase/FAD synthetase	NA	NA	NA	NA	NA
WP_010930542.1|2259399_2262261_+|tRNA	isoleucine--tRNA ligase	tRNA	A0A1V0SJ93	Klosneuvirus	25.5	1.0e-71
WP_010930541.1|2262263_2262770_+	lipoprotein signal peptidase	NA	NA	NA	NA	NA
WP_010930540.1|2262874_2264083_+	bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC	NA	Q9HH70	Methanothermobacter_phage	30.0	3.8e-36
WP_033446178.1|2264084_2265023_-	membrane protein	NA	NA	NA	NA	NA
WP_010930538.1|2265184_2265658_+	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012808.1|2265654_2266605_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 20
NZ_CP010261	Bordetella pertussis strain I538 chromosome, complete genome	4107716	2686248	2726917	4107716	tRNA,transposase	Salmonella_phage(33.33%)	42	NA	NA
WP_010929591.1|2686248_2687199_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_004567479.1|2687309_2687492_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931004.1|2687591_2688188_-	lipoprotein	NA	NA	NA	NA	NA
WP_010931005.1|2688371_2689463_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003812822.1|2689962_2690373_-	MerR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931006.1|2690431_2690773_-	integration host factor subunit alpha	NA	A0A0H3UZA0	Geobacillus_virus	42.2	2.8e-13
WP_010931007.1|2690778_2693196_-|tRNA	phenylalanine--tRNA ligase subunit beta	tRNA	NA	NA	NA	NA
WP_010926359.1|2693208_2694231_-|tRNA	phenylalanine--tRNA ligase subunit alpha	tRNA	A0A2H4UW22	Bodo_saltans_virus	38.6	1.0e-26
WP_003812832.1|2694305_2694665_-	50S ribosomal protein L20	NA	NA	NA	NA	NA
WP_003812834.1|2694680_2694878_-	50S ribosomal protein L35	NA	NA	NA	NA	NA
WP_010929584.1|2695213_2696164_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003816756.1|2696358_2696808_+	dUTP diphosphatase	NA	S4TNT3	Salmonella_phage	67.2	3.7e-45
WP_005012808.1|2696804_2697755_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931008.1|2697865_2699314_+	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
WP_010931009.1|2699428_2699710_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|2699813_2700764_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003820420.1|2701008_2701722_-	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_019247724.1|2701844_2702072_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_003816758.1|2702366_2703005_-	DedA family protein	NA	NA	NA	NA	NA
WP_010931011.1|2703113_2704148_+	metal-dependent hydrolase	NA	NA	NA	NA	NA
WP_010929591.1|2704144_2705095_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931012.1|2705510_2706035_-	DNA-binding protein	NA	J9Q7G7	Salmonella_phage	32.9	6.5e-09
WP_004567322.1|2706038_2706308_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931013.1|2706506_2707568_-	LacI family DNA-binding transcriptional regulator	NA	NA	NA	NA	NA
WP_010931014.1|2707651_2709286_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	31.1	2.9e-15
WP_010931015.1|2709287_2710091_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931016.1|2710119_2711079_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931017.1|2711082_2712597_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019248147.1|2712633_2713638_-	M20/M25/M40 family metallo-hydrolase	NA	NA	NA	NA	NA
WP_010931018.1|2714069_2714540_-	DUF1801 domain-containing protein	NA	NA	NA	NA	NA
WP_010931019.1|2714575_2715187_-	LysE family translocator	NA	NA	NA	NA	NA
WP_010931020.1|2715217_2715841_-	FMN-binding negative transcriptional regulator	NA	NA	NA	NA	NA
WP_010931021.1|2715921_2717454_+	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
WP_010931022.1|2717488_2718730_-	MFS transporter	NA	NA	NA	NA	NA
WP_010931023.1|2718773_2719805_-	alcohol dehydrogenase catalytic domain-containing protein	NA	A0A2K9L339	Tupanvirus	27.8	1.8e-26
WP_010931024.1|2719801_2720971_-	FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010931025.1|2720964_2721645_-	cupin domain-containing protein	NA	NA	NA	NA	NA
WP_010931026.1|2721806_2722649_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931027.1|2722811_2723783_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010931028.1|2723954_2724833_+	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
WP_010931029.1|2724855_2725926_-	FUSC family protein	NA	NA	NA	NA	NA
WP_005013747.1|2725966_2726917_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 21
NZ_CP010261	Bordetella pertussis strain I538 chromosome, complete genome	4107716	2731028	2813163	4107716	tRNA,transposase	Bacillus_virus(25.0%)	60	NA	NA
WP_005013747.1|2731028_2731979_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931032.1|2732728_2733163_-	DUF126 domain-containing protein	NA	NA	NA	NA	NA
WP_003816890.1|2733155_2734391_-	DUF521 domain-containing protein	NA	NA	NA	NA	NA
WP_010931033.1|2734398_2735193_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931034.1|2735189_2735993_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	38.2	2.7e-30
WP_010931035.1|2736019_2736997_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931036.1|2737025_2738597_-	amidohydrolase	NA	NA	NA	NA	NA
WP_014905903.1|2738607_2739429_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247976.1|2741153_2742584_-	MFS transporter	NA	NA	NA	NA	NA
WP_010931038.1|2742596_2743286_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003816876.1|2743381_2744722_-	type II toxin-antitoxin system HipA family toxin	NA	NA	NA	NA	NA
WP_019247974.1|2744723_2744981_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010931040.1|2745334_2746927_-	glutamine-hydrolyzing GMP synthase	NA	A0A1V0SH76	Hokovirus	33.3	1.0e-17
WP_003812368.1|2747023_2748484_-	IMP dehydrogenase	NA	A0A1V0SHK8	Klosneuvirus	41.3	1.6e-97
WP_010931041.1|2748706_2749318_+	DUF2239 family protein	NA	NA	NA	NA	NA
WP_010931070.1|2753064_2754015_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931042.1|2754430_2757067_-	AAA family ATPase	NA	NA	NA	NA	NA
WP_014486086.1|2757063_2758188_-	DNA repair exonuclease	NA	NA	NA	NA	NA
WP_019247521.1|2758184_2759567_-	D-amino acid dehydrogenase	NA	NA	NA	NA	NA
WP_003810957.1|2759702_2760170_+	winged helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_019249399.1|2761088_2762234_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931046.1|2762235_2763966_-	carbohydrate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_004568502.1|2764083_2764392_-	DUF2160 domain-containing protein	NA	NA	NA	NA	NA
WP_010931047.1|2764404_2765217_-	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
WP_010931048.1|2766097_2767186_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	28.1	9.7e-15
WP_010931049.1|2768388_2769177_+	DeoR family transcriptional regulator	NA	A0A077SK06	Escherichia_phage	30.4	2.0e-22
WP_010931050.1|2769216_2770821_+	glycerol-3-phosphate dehydrogenase/oxidase	NA	NA	NA	NA	NA
WP_010931051.1|2770901_2771642_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247407.1|2771649_2772144_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010931052.1|2772516_2773536_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931053.1|2773532_2774915_-	FAD-dependent oxidoreductase	NA	A0A2P0ZL82	Lactobacillus_phage	28.4	7.9e-30
WP_010931054.1|2774947_2775808_-	amidohydrolase	NA	NA	NA	NA	NA
WP_029443733.1|2776811_2777693_+	NRDE family protein	NA	NA	NA	NA	NA
WP_003810921.1|2777751_2778189_+	carboxypeptidase regulatory-like domain-containing protein	NA	NA	NA	NA	NA
WP_003816577.1|2778279_2779251_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931057.1|2779289_2780234_-	dihydrodipicolinate synthase family protein	NA	NA	NA	NA	NA
WP_010931058.1|2780329_2781139_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931059.1|2781215_2781590_-	MAPEG family protein	NA	NA	NA	NA	NA
WP_010931060.1|2781696_2782389_-	DUF2238 domain-containing protein	NA	NA	NA	NA	NA
WP_003810909.1|2782381_2782798_-|tRNA	aminoacyl-tRNA hydrolase	tRNA	NA	NA	NA	NA
WP_010931061.1|2782908_2783541_+	7-carboxy-7-deazaguanine synthase	NA	NA	NA	NA	NA
WP_010931062.1|2783569_2784013_+	6-carboxytetrahydropterin synthase QueD	NA	NA	NA	NA	NA
WP_003810897.1|2784034_2785126_-	TRAP transporter substrate-binding protein DctP	NA	NA	NA	NA	NA
WP_010931063.1|2785180_2785981_-	aldolase	NA	NA	NA	NA	NA
WP_010931064.1|2786116_2786737_+	cupin domain-containing protein	NA	NA	NA	NA	NA
WP_010931065.1|2786876_2787350_+	MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|2788489_2789440_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931066.1|2789436_2797098_-	hemagglutinin repeat-containing protein	NA	A0A0R6PJK4	Moraxella_phage	30.9	7.3e-24
WP_010931067.1|2797338_2801385_-	phosphoribosylformylglycinamidine synthase	NA	A9YX36	Burkholderia_phage	67.4	6.3e-160
WP_003816847.1|2801697_2802279_+	TRAP transporter small permease	NA	NA	NA	NA	NA
WP_010931068.1|2802275_2803574_+	TRAP transporter large permease	NA	NA	NA	NA	NA
WP_010931069.1|2803653_2804682_+	DctP family TRAP transporter solute-binding subunit	NA	NA	NA	NA	NA
WP_010931070.1|2804942_2805893_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010927663.1|2805889_2806840_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931071.1|2807156_2807762_+	fimbrial major subunit FimX	NA	NA	NA	NA	NA
WP_010931072.1|2807815_2809129_-	phenylacetate--CoA ligase	NA	NA	NA	NA	NA
WP_003813284.1|2809203_2809674_-	hydroxyphenylacetyl-CoA thioesterase PaaI	NA	NA	NA	NA	NA
WP_010931073.1|2809673_2810462_-	2-(1,2-epoxy-1,2-dihydrophenyl)acetyl-CoA isomerase	NA	NA	NA	NA	NA
WP_010931074.1|2810472_2812125_-	phenylacetic acid degradation protein PaaN	NA	NA	NA	NA	NA
WP_010929591.1|2812212_2813163_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 22
NZ_CP010261	Bordetella pertussis strain I538 chromosome, complete genome	4107716	2837088	2884798	4107716	transposase	Pelagibacter_phage(25.0%)	40	NA	NA
WP_005012067.1|2837088_2838039_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931085.1|2838173_2839280_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010931086.1|2839290_2840388_+	GTP 3',8-cyclase MoaA	NA	NA	NA	NA	NA
WP_010931087.1|2840532_2841738_-	molybdopterin molybdotransferase MoeA	NA	NA	NA	NA	NA
WP_010931088.1|2841744_2842266_-	molybdenum cofactor biosynthesis protein B	NA	NA	NA	NA	NA
WP_010931089.1|2842262_2842754_-	molybdenum cofactor biosynthesis protein MoaE	NA	NA	NA	NA	NA
WP_003819740.1|2842750_2843002_-	MoaD/ThiS family protein	NA	NA	NA	NA	NA
WP_003819741.1|2842982_2843468_-	cyclic pyranopterin monophosphate synthase MoaC	NA	NA	NA	NA	NA
WP_010931090.1|2843603_2847065_+	DUF748 domain-containing protein	NA	NA	NA	NA	NA
WP_010931091.1|2847082_2847967_+	dienelactone hydrolase family protein	NA	NA	NA	NA	NA
WP_010931092.1|2847976_2848408_-	lipoprotein	NA	NA	NA	NA	NA
WP_003809348.1|2848654_2849158_+	peroxiredoxin	NA	M1I839	Pelagibacter_phage	44.1	1.8e-24
WP_010931094.1|2849235_2850636_+	MFS transporter	NA	NA	NA	NA	NA
WP_010931095.1|2850710_2851586_-	membrane protein	NA	NA	NA	NA	NA
WP_023853546.1|2851582_2852590_-	biotin synthase BioB	NA	NA	NA	NA	NA
WP_010931097.1|2853057_2853363_+	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
WP_003819753.1|2853453_2854044_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930525.1|2854234_2855251_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010931098.1|2855442_2857779_-	heavy metal translocating P-type ATPase	NA	E4ZFI9	Streptococcus_phage	42.8	3.2e-124
WP_003812014.1|2857861_2858296_+	Cd(II)/Pb(II)-responsive transcriptional regulator	NA	NA	NA	NA	NA
WP_023995489.1|2858394_2859345_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|2859443_2860394_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931099.1|2860390_2861185_-	N-formylglutamate deformylase	NA	NA	NA	NA	NA
WP_010931100.1|2861216_2861921_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010931101.1|2861995_2862796_-	SURF1 family protein	NA	NA	NA	NA	NA
WP_003809276.1|2862792_2863200_-	cytochrome o ubiquinol oxidase subunit IV	NA	NA	NA	NA	NA
WP_003819722.1|2863196_2863838_-	cytochrome o ubiquinol oxidase subunit III	NA	NA	NA	NA	NA
WP_010931102.1|2863830_2865831_-	cytochrome o ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
WP_010931103.1|2867091_2868423_+	MFS transporter	NA	NA	NA	NA	NA
WP_005012067.1|2868419_2869370_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931105.1|2871076_2871343_-	accessory factor UbiK family protein	NA	NA	NA	NA	NA
WP_003812839.1|2872050_2872389_+	P-II family nitrogen regulator	NA	NA	NA	NA	NA
WP_010931107.1|2876943_2877546_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931108.1|2877642_2878932_+	MFS transporter	NA	NA	NA	NA	NA
WP_003812846.1|2878989_2879721_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	31.0	1.4e-12
WP_010931109.1|2879717_2880521_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	23.5	7.9e-14
WP_003812851.1|2880517_2881606_-	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
WP_003820410.1|2881602_2882532_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003812857.1|2882680_2883826_-	branched-chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930800.1|2883847_2884798_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 23
NZ_CP010261	Bordetella pertussis strain I538 chromosome, complete genome	4107716	2892795	2956543	4107716	transposase,protease	uncultured_Mediterranean_phage(22.22%)	55	NA	NA
WP_010931114.1|2892795_2895111_-|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	protease	A0A223W0B1	Agrobacterium_phage	41.9	4.1e-164
WP_010931115.1|2895166_2897335_-	penicillin-binding protein 1C	NA	NA	NA	NA	NA
WP_010931116.1|2897331_2902521_-	alpha-2-macroglobulin family protein	NA	NA	NA	NA	NA
WP_003820400.1|2902610_2902925_-|protease	ATP-dependent Clp protease adapter ClpS	protease	A0A1B1IT64	uncultured_Mediterranean_phage	43.8	1.2e-10
WP_003812875.1|2903152_2903398_+	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	76.6	1.3e-20
WP_003820399.1|2903492_2904011_+	DUF192 domain-containing protein	NA	A0A1B1IUW8	uncultured_Mediterranean_phage	42.2	5.1e-14
WP_010931117.1|2904110_2905316_-	3-oxoadipyl-CoA thiolase	NA	NA	NA	NA	NA
WP_019247560.1|2905431_2906829_-	chloride channel protein	NA	NA	NA	NA	NA
WP_010931119.1|2906945_2907524_-	superoxide dismutase [Fe]	NA	NA	NA	NA	NA
WP_010931120.1|2907596_2908988_-	exodeoxyribonuclease VII large subunit	NA	A0A1V0SD82	Indivirus	32.0	1.4e-29
WP_005012067.1|2909155_2910106_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812889.1|2910386_2911007_+	MotA/TolQ/ExbB proton channel family protein	NA	NA	NA	NA	NA
WP_010931122.1|2911003_2911417_+	biopolymer transporter ExbD	NA	NA	NA	NA	NA
WP_010931123.1|2911413_2912457_+	tetraacyldisaccharide 4'-kinase	NA	NA	NA	NA	NA
WP_003812895.1|2912512_2912701_+	Trm112 family protein	NA	NA	NA	NA	NA
WP_010931124.1|2912710_2913475_+	3-deoxy-manno-octulosonate cytidylyltransferase	NA	NA	NA	NA	NA
WP_010931125.1|2913565_2914222_+	adenylate kinase	NA	NA	NA	NA	NA
WP_010931126.1|2914313_2915072_+	3-hydroxyacyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_010931127.1|2915097_2916699_+	murein biosynthesis integral membrane protein MurJ	NA	NA	NA	NA	NA
WP_010931128.1|2916899_2917904_+	FecR domain-containing protein	NA	NA	NA	NA	NA
WP_003812908.1|2918004_2918268_+	30S ribosomal protein S20	NA	NA	NA	NA	NA
WP_010931129.1|2918385_2919162_-	2-dehydro-3-deoxyglucarate aldolase	NA	NA	NA	NA	NA
WP_005012067.1|2919752_2920703_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931130.1|2923086_2924199_-	Ldh family oxidoreductase	NA	NA	NA	NA	NA
WP_005012808.1|2924255_2925206_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003813070.1|2925414_2925636_-	YgdI/YgdR family lipoprotein	NA	NA	NA	NA	NA
WP_010931131.1|2925849_2927256_-	threonine synthase	NA	NA	NA	NA	NA
WP_003813074.1|2927252_2928557_-	homoserine dehydrogenase	NA	NA	NA	NA	NA
WP_010931132.1|2928553_2929741_-	alanine transaminase	NA	NA	NA	NA	NA
WP_003813077.1|2929957_2930410_+	Xcc1710-like domain-containing protein	NA	NA	NA	NA	NA
WP_003813079.1|2930412_2930877_+	peroxiredoxin	NA	NA	NA	NA	NA
WP_023853657.1|2930956_2932636_+	PhoH family protein	NA	A0A2I7SAD7	Vibrio_phage	36.7	7.3e-70
WP_003813085.1|2932740_2933718_+	4-hydroxythreonine-4-phosphate dehydrogenase PdxA	NA	NA	NA	NA	NA
WP_010931134.1|2933797_2934766_+	bile acid:sodium symporter	NA	NA	NA	NA	NA
WP_003813089.1|2934786_2936160_-	replicative DNA helicase	NA	C7BGG1	Burkholderia_phage	58.2	4.0e-135
WP_003813091.1|2936156_2936993_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931135.1|2937109_2937565_-	50S ribosomal protein L9	NA	NA	NA	NA	NA
WP_003813094.1|2937580_2937853_-	30S ribosomal protein S18	NA	NA	NA	NA	NA
WP_003813095.1|2937945_2938269_-	primosomal replication protein N	NA	NA	NA	NA	NA
WP_010926331.1|2938316_2938697_-	30S ribosomal protein S6	NA	NA	NA	NA	NA
WP_003813103.1|2938916_2939714_-	GTP cyclohydrolase I FolE2	NA	NA	NA	NA	NA
WP_010931136.1|2939870_2941733_-	1-deoxy-D-xylulose-5-phosphate synthase	NA	NA	NA	NA	NA
WP_003820295.1|2941782_2942694_-	polyprenyl synthetase family protein	NA	NA	NA	NA	NA
WP_003813109.1|2942698_2942965_-	exodeoxyribonuclease VII small subunit	NA	NA	NA	NA	NA
WP_010931137.1|2943051_2943921_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931138.1|2944056_2945022_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003813114.1|2945192_2946203_+	acyltransferase family protein	NA	A0A0F6TJ51	Escherichia_coli_O157_typing_phage	24.6	3.6e-16
WP_010931139.1|2946350_2947502_+	aromatic ring-hydroxylating dioxygenase subunit alpha	NA	NA	NA	NA	NA
WP_003814555.1|2948644_2950117_-	magnesium transporter	NA	NA	NA	NA	NA
WP_003814554.1|2950127_2950538_-	acyl-CoA thioesterase	NA	NA	NA	NA	NA
WP_010929220.1|2950601_2951648_-	YeiH family putative sulfate export transporter	NA	NA	NA	NA	NA
WP_003814552.1|2951754_2952633_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931140.1|2952646_2953843_-	amidohydrolase	NA	NA	NA	NA	NA
WP_023852727.1|2953919_2955596_+	long-chain-fatty-acid--CoA ligase	NA	A0A2H4PQU7	Staphylococcus_phage	28.1	9.3e-33
WP_005012067.1|2955592_2956543_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 24
NZ_CP010261	Bordetella pertussis strain I538 chromosome, complete genome	4107716	2965290	3024470	4107716	transposase	Bacillus_virus(28.57%)	56	NA	NA
WP_010930176.1|2965290_2966241_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247277.1|2966315_2967470_+	iron-containing alcohol dehydrogenase	NA	NA	NA	NA	NA
WP_005012067.1|2967526_2968477_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814535.1|2968575_2968881_-	antibiotic biosynthesis monooxygenase	NA	NA	NA	NA	NA
WP_003820797.1|2968909_2969344_-	DUF126 domain-containing protein	NA	NA	NA	NA	NA
WP_010931147.1|2969345_2970590_-	DUF521 domain-containing protein	NA	NA	NA	NA	NA
WP_003820799.1|2970586_2971297_-	FadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_033446288.1|2971311_2972223_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931149.1|2972585_2972990_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247890.1|2972986_2973445_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_019247891.1|2973451_2974360_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_010931150.1|2974356_2975223_+	sugar ABC transporter permease	NA	NA	NA	NA	NA
WP_003814524.1|2975209_2976037_+	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
WP_003820806.1|2976047_2977175_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	32.3	1.2e-23
WP_023852748.1|2978252_2979491_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931152.1|2979532_2980795_+	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_010931153.1|2980801_2981554_+	DNA-binding protein	NA	NA	NA	NA	NA
WP_019248355.1|2981605_2981791_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003820813.1|2982066_2982531_+	redox-sensitive transcriptional activator SoxR	NA	NA	NA	NA	NA
WP_003820814.1|2982562_2983222_+	DNA-3-methyladenine glycosylase I	NA	NA	NA	NA	NA
WP_010931154.1|2983366_2985475_+	AsmA family protein	NA	NA	NA	NA	NA
WP_023852714.1|2985471_2986422_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931155.1|2986525_2987146_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931156.1|2987237_2987990_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_019248356.1|2989124_2990249_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247402.1|2990294_2990663_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|2990904_2991855_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247492.1|2992890_2993433_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|2993818_2994769_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023997028.1|2994765_2995731_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003815281.1|2995800_2996637_+	3-methyl-2-oxobutanoate hydroxymethyltransferase	NA	A0A0P0BXC9	Ostreococcus_lucimarinus_virus	33.3	1.6e-33
WP_010931158.1|2997149_2998259_+	porin	NA	NA	NA	NA	NA
WP_005012067.1|2998320_2999271_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931159.1|2999463_3000246_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010931160.1|3000259_3001009_-	SDR family oxidoreductase	NA	A0A0M4JSW6	Mollivirus	26.4	1.2e-11
WP_010931161.1|3001036_3002383_-	MFS transporter	NA	NA	NA	NA	NA
WP_010931162.1|3002408_3003338_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003819549.1|3003453_3004359_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931163.1|3004376_3005576_-	aspartate/tyrosine/aromatic aminotransferase	NA	NA	NA	NA	NA
WP_010931164.1|3005648_3006341_-	HD domain-containing protein	NA	A0A1D6Y7U0	Golden_Marseillevirus	29.9	4.7e-07
WP_010931165.1|3006389_3008816_-	copper-translocating P-type ATPase	NA	A0A218MNH6	uncultured_virus	33.8	1.2e-86
WP_023853143.1|3008860_3009811_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003809026.1|3010027_3010396_-	DUF861 domain-containing protein	NA	NA	NA	NA	NA
WP_003809025.1|3010682_3011609_+	VOC family protein	NA	NA	NA	NA	NA
WP_010931167.1|3011652_3012663_+	zinc-binding dehydrogenase	NA	NA	NA	NA	NA
WP_010931168.1|3012659_3013094_+	PaaI family thioesterase	NA	NA	NA	NA	NA
WP_010931169.1|3014219_3015008_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	40.0	1.1e-33
WP_010931170.1|3015017_3015800_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931171.1|3015803_3016895_-	DUF2817 domain-containing protein	NA	NA	NA	NA	NA
WP_010931172.1|3017000_3018476_+	acyl--CoA ligase	NA	Q75ZG1	Hepacivirus	25.6	3.0e-35
WP_010931173.1|3018617_3019166_+	cysteine dioxygenase family protein	NA	NA	NA	NA	NA
WP_003809010.1|3019181_3019643_-	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931174.1|3019743_3020733_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931175.1|3021031_3021733_+	riboflavin synthase	NA	NA	NA	NA	NA
WP_010931176.1|3021771_3023145_-	amidase	NA	NA	NA	NA	NA
WP_023997744.1|3023183_3024470_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 26
NZ_CP010261	Bordetella pertussis strain I538 chromosome, complete genome	4107716	3380266	3434007	4107716	transposase	Staphylococcus_phage(33.33%)	48	NA	NA
WP_023995489.1|3380266_3381217_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931336.1|3381621_3382266_-	urease accessory protein UreG	NA	NA	NA	NA	NA
WP_019247677.1|3382290_3382875_-	urease accessory protein UreF	NA	NA	NA	NA	NA
WP_014905506.1|3382975_3383593_-	urease accessory protein UreE	NA	NA	NA	NA	NA
WP_010931337.1|3383595_3385311_-	urease subunit alpha	NA	NA	NA	NA	NA
WP_010931338.1|3385307_3385616_-	urease subunit beta	NA	NA	NA	NA	NA
WP_003814828.1|3385632_3386250_-	HupE/UreJ family protein	NA	NA	NA	NA	NA
WP_010931340.1|3386294_3386597_-	urease subunit gamma	NA	NA	NA	NA	NA
WP_003814832.1|3386697_3387552_-	urease accessory protein UreD	NA	NA	NA	NA	NA
WP_124740609.1|3387739_3387964_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929281.1|3388133_3388406_+	MerR family DNA-binding transcriptional regulator	NA	NA	NA	NA	NA
WP_010929282.1|3388823_3389231_-	GFA family protein	NA	NA	NA	NA	NA
WP_010931341.1|3389600_3390395_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010927102.1|3390495_3391731_+	methylaspartate ammonia-lyase	NA	NA	NA	NA	NA
WP_003814852.1|3391799_3392816_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931342.1|3392827_3394204_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_003814856.1|3394200_3395397_+	MFS transporter	NA	NA	NA	NA	NA
WP_003814858.1|3395393_3396932_-	SpoVR family protein	NA	NA	NA	NA	NA
WP_010931343.1|3396928_3398188_-	YeaH/YhbH family protein	NA	NA	NA	NA	NA
WP_005012067.1|3400128_3401079_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931344.1|3401845_3402940_-	CoA transferase	NA	NA	NA	NA	NA
WP_019247312.1|3402932_3404267_-	AMP-binding protein	NA	NA	NA	NA	NA
WP_003808193.1|3404220_3404904_-	TetR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003808195.1|3404929_3406093_-	acyl-CoA dehydrogenase family protein	NA	NA	NA	NA	NA
WP_004566224.1|3406089_3407091_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010931346.1|3407090_3407963_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010931347.1|3407959_3408709_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	27.8	1.9e-09
WP_010931348.1|3408705_3409497_-	ATP-binding cassette domain-containing protein	NA	A0A1M7XV31	Cedratvirus	29.4	1.7e-08
WP_010931349.1|3409493_3410633_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_047122778.1|3410908_3411694_+	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_014486103.1|3411727_3412510_+	crotonase/enoyl-CoA hydratase family protein	NA	NA	NA	NA	NA
WP_010931351.1|3412513_3412903_+	OB-fold domain-containing protein	NA	NA	NA	NA	NA
WP_010931352.1|3414042_3414906_+	MaoC family dehydratase N-terminal domain-containing protein	NA	NA	NA	NA	NA
WP_010931353.1|3414941_3416030_+	NAD(P)H-binding protein	NA	NA	NA	NA	NA
WP_010931070.1|3416026_3416977_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247959.1|3417330_3420309_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003818344.1|3421235_3422114_+	fatty acid desaturase	NA	NA	NA	NA	NA
WP_005013747.1|3424062_3425013_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931354.1|3425009_3425477_-	ribonuclease HI	NA	J9Q745	Salmonella_phage	50.7	5.6e-36
WP_010931355.1|3425519_3426290_-	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_010927090.1|3426310_3427111_+	hydroxyacylglutathione hydrolase	NA	NA	NA	NA	NA
WP_010931356.1|3427121_3428531_+	transglycosylase SLT domain-containing protein	NA	NA	NA	NA	NA
WP_003814739.1|3428625_3429411_+	enoyl-ACP reductase FabI	NA	NA	NA	NA	NA
WP_010931561.1|3429650_3430667_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003814742.1|3430774_3431167_-	OsmC family protein	NA	NA	NA	NA	NA
WP_010931357.1|3431304_3431985_+	tellurite resistance TerB family protein	NA	NA	NA	NA	NA
WP_023994844.1|3431989_3432961_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930179.1|3433056_3434007_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 27
NZ_CP010261	Bordetella pertussis strain I538 chromosome, complete genome	4107716	3440162	3499462	4107716	tRNA,transposase	Acinetobacter_phage(27.27%)	48	NA	NA
WP_003820957.1|3440162_3441926_+|tRNA	glutamine--tRNA ligase/YqeY domain fusion protein	tRNA	A0A222YZ70	Escherichia_phage	50.0	5.0e-162
WP_010931362.1|3442037_3442916_+	septum site-determining protein MinC	NA	NA	NA	NA	NA
WP_003814250.1|3443028_3443844_+	septum site-determining protein MinD	NA	NA	NA	NA	NA
WP_003814252.1|3443847_3444099_+	cell division topological specificity factor MinE	NA	NA	NA	NA	NA
WP_010929632.1|3444183_3445200_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003814254.1|3445530_3445752_-	glycine zipper 2TM domain-containing protein	NA	NA	NA	NA	NA
WP_019247693.1|3448112_3449030_-	DMT family transporter	NA	NA	NA	NA	NA
WP_019247692.1|3449527_3450736_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931365.1|3450815_3452387_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003814275.1|3452504_3453440_-	glycosyltransferase family 2 protein	NA	NA	NA	NA	NA
WP_003814277.1|3453628_3454573_+	LysR family transcriptional regulator	NA	A0A2P0ZL89	Lactobacillus_phage	23.2	8.4e-07
WP_003814283.1|3455140_3460858_+	excinuclease ABC subunit UvrA	NA	A0A1B1IVR3	uncultured_Mediterranean_phage	39.5	1.0e-195
WP_010931367.1|3460863_3461991_+	aminodeoxychorismate synthase component I	NA	S4VT78	Pandoravirus	37.8	3.8e-38
WP_003814287.1|3462046_3462673_+	aminotransferase class IV	NA	NA	NA	NA	NA
WP_010931363.1|3462944_3463961_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010927020.1|3464056_3464767_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010931368.1|3464763_3465753_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931369.1|3465848_3467480_+	AMP-binding protein	NA	NA	NA	NA	NA
WP_010931370.1|3467482_3468220_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247745.1|3468375_3469248_-|tRNA	tRNA threonylcarbamoyladenosine dehydratase	tRNA	NA	NA	NA	NA
WP_003814298.1|3469516_3470737_+	MFS transporter	NA	NA	NA	NA	NA
WP_003814300.1|3470733_3471393_+	gamma-glutamylcyclotransferase	NA	NA	NA	NA	NA
WP_003814302.1|3471464_3472097_+	pyridoxamine 5'-phosphate oxidase	NA	NA	NA	NA	NA
WP_010931372.1|3472126_3472645_+	flavin reductase family protein	NA	NA	NA	NA	NA
WP_010931373.1|3472655_3473765_+	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_003814312.1|3473811_3474666_+	formyltetrahydrofolate deformylase	NA	NA	NA	NA	NA
WP_010931374.1|3474667_3475570_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|3476792_3477743_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023997720.1|3479499_3480489_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247413.1|3480485_3480644_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931375.1|3480664_3481453_-	indole-3-glycerol phosphate synthase TrpC	NA	A0A0P0IR83	Acinetobacter_phage	53.0	5.1e-66
WP_003817833.1|3481449_3482481_-	anthranilate phosphoribosyltransferase	NA	A0A0N7IRD9	Acinetobacter_phage	42.7	7.4e-73
WP_003815390.1|3482499_3483063_-	aminodeoxychorismate/anthranilate synthase component II	NA	A0A0P0IKJ1	Acinetobacter_phage	62.1	1.1e-65
WP_010931376.1|3483118_3484639_-	anthranilate synthase component I	NA	S4VT78	Pandoravirus	32.1	9.0e-43
WP_010931377.1|3484902_3485607_-	phosphoglycolate phosphatase	NA	NA	NA	NA	NA
WP_003815384.1|3485614_3486352_-	ribulose-phosphate 3-epimerase	NA	NA	NA	NA	NA
WP_003815381.1|3486457_3486832_+	Co2+/Mg2+ efflux protein ApaG	NA	NA	NA	NA	NA
WP_003815379.1|3486874_3488164_+	murein transglycosylase A	NA	NA	NA	NA	NA
WP_010931378.1|3488160_3489330_+	UbiH/UbiF family hydroxylase	NA	NA	NA	NA	NA
WP_010931379.1|3489326_3490166_+	thiol:disulfide interchange protein DsbC	NA	NA	NA	NA	NA
WP_010931380.1|3490225_3491161_+	D-2-hydroxyacid dehydrogenase family protein	NA	A0A1J0F959	Only_Syngen_Nebraska_virus	27.7	6.4e-15
WP_005012067.1|3491173_3492124_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931381.1|3492222_3493185_-|tRNA	tRNA 2-thiocytidine(32) synthetase TtcA	tRNA	A0A0U2S5Z2	Escherichia_phage	64.5	4.6e-93
WP_003817821.1|3493216_3493576_-	dihydroneopterin aldolase	NA	NA	NA	NA	NA
WP_010931382.1|3493700_3494603_+	NAD(P)/FAD-dependent oxidoreductase	NA	G3MA85	Bacillus_virus	24.0	1.9e-08
WP_010931383.1|3494604_3496377_-	M61 family metallopeptidase	NA	NA	NA	NA	NA
WP_003815367.1|3496411_3497188_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_023852617.1|3498511_3499462_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 28
NZ_CP010261	Bordetella pertussis strain I538 chromosome, complete genome	4107716	3514400	3573522	4107716	tRNA,transposase	Planktothrix_phage(12.5%)	48	NA	NA
WP_010929584.1|3514400_3515351_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931392.1|3515479_3516613_-	M20 family metallopeptidase	NA	NA	NA	NA	NA
WP_010931393.1|3516656_3517562_-	hydrolase	NA	NA	NA	NA	NA
WP_023852622.1|3517564_3519265_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	32.7	1.0e-15
WP_010931394.1|3519261_3520182_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_003817805.1|3520189_3521167_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931395.1|3521225_3522260_-	succinylglutamate desuccinylase/aspartoacylase family protein	NA	NA	NA	NA	NA
WP_003815317.1|3524234_3524471_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023995266.1|3524597_3525461_-	NAD(P)H-hydrate dehydratase	NA	NA	NA	NA	NA
WP_003815315.1|3525549_3526371_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003815313.1|3526450_3527188_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010931397.1|3527184_3528177_-	nitronate monooxygenase	NA	NA	NA	NA	NA
WP_003817794.1|3528290_3528953_+	TetR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931399.1|3528997_3530146_+	acyl-CoA dehydrogenase family protein	NA	NA	NA	NA	NA
WP_010931400.1|3532469_3533420_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014486105.1|3533760_3534711_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|3534809_3535760_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_029443756.1|3536056_3536554_+	cupredoxin family protein	NA	NA	NA	NA	NA
WP_010931403.1|3536596_3538372_+	copper resistance system multicopper oxidase	NA	NA	NA	NA	NA
WP_010931404.1|3538379_3539246_+	copper resistance protein B	NA	NA	NA	NA	NA
WP_019249391.1|3539252_3539987_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010931406.1|3541156_3541951_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003815296.1|3542240_3542831_+	cysteine dioxygenase	NA	NA	NA	NA	NA
WP_010931407.1|3542864_3544193_-	amidase	NA	NA	NA	NA	NA
WP_010931408.1|3544267_3545413_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_014905478.1|3545524_3546523_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_033446233.1|3546485_3546920_+	carbon monoxide dehydrogenase	NA	NA	NA	NA	NA
WP_010929974.1|3548436_3549321_+	DMT family transporter	NA	NA	NA	NA	NA
WP_010929973.1|3549317_3550523_-	cardiolipin synthase ClsB	NA	NA	NA	NA	NA
WP_010929972.1|3550519_3551380_-	endonuclease/exonuclease/phosphatase family protein	NA	NA	NA	NA	NA
WP_003807038.1|3551492_3553283_-|tRNA	aspartate--tRNA ligase	tRNA	A0A1V0SAC0	Catovirus	25.5	6.5e-08
WP_003807035.1|3553323_3553989_-	DUF502 domain-containing protein	NA	A0A2I7S9X1	Vibrio_phage	28.4	6.7e-11
WP_010929971.1|3553989_3554298_-	FmdB family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929970.1|3554463_3555750_-	putative Na+/H+ antiporter	NA	NA	NA	NA	NA
WP_005012067.1|3557183_3558134_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929969.1|3558232_3559183_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929968.1|3561134_3562349_-	formate-dependent phosphoribosylglycinamide formyltransferase	NA	NA	NA	NA	NA
WP_003815171.1|3562454_3563444_+	KpsF/GutQ family sugar-phosphate isomerase	NA	A0A2P0VNK5	Tetraselmis_virus	37.7	4.3e-38
WP_003815172.1|3563440_3564049_+	HAD-IIIA family hydrolase	NA	E3T535	Cafeteria_roenbergensis_virus	26.1	5.2e-10
WP_010929967.1|3564061_3564691_+	LPS export ABC transporter periplasmic protein LptC	NA	NA	NA	NA	NA
WP_003815175.1|3564687_3565308_+	lipopolysaccharide transport periplasmic protein LptA	NA	NA	NA	NA	NA
WP_003815177.1|3565339_3566131_+	LPS export ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	27.4	9.5e-20
WP_010929966.1|3566982_3567438_+	PTS sugar transporter subunit IIA	NA	NA	NA	NA	NA
WP_010929965.1|3567456_3568383_+	HPr kinase/phosphorylase	NA	NA	NA	NA	NA
WP_010929964.1|3568436_3569723_-	cytochrome c	NA	NA	NA	NA	NA
WP_003815183.1|3570653_3571526_+	RNase adapter RapZ	NA	A0A1P8D5W0	Corynebacterium_phage	34.5	2.4e-08
WP_010929963.1|3571522_3572473_+	septal ring lytic transglycosylase RlpA family protein	NA	F5B3X9	Synechococcus_phage	47.2	6.9e-17
WP_005012067.1|3572571_3573522_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 30
NZ_CP010261	Bordetella pertussis strain I538 chromosome, complete genome	4107716	4028838	4082270	4107716	transposase	Planktothrix_phage(40.0%)	45	NA	NA
WP_010931661.1|4028838_4029789_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931662.1|4029958_4031185_+	bifunctional glutamate N-acetyltransferase/amino-acid acetyltransferase ArgJ	NA	NA	NA	NA	NA
WP_010931663.1|4031384_4032251_+	ATP-binding protein	NA	NA	NA	NA	NA
WP_003815027.1|4032243_4033206_+	Nudix family hydrolase	NA	A0A221LFJ1	Barns_Ness_breadcrumb_sponge_sobemo-like_virus	53.4	1.9e-06
WP_010927663.1|4033306_4034257_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|4034355_4035306_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929577.1|4035404_4036355_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994937.1|4036351_4037845_-	efflux transporter outer membrane subunit	NA	NA	NA	NA	NA
WP_003815032.1|4037841_4040949_-	multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_010931665.1|4040945_4044014_-	MdtB/MuxB family multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_010931666.1|4044010_4045261_-	MdtA/MuxA family multidrug efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
WP_003815038.1|4045441_4046203_-	cell division protein ZapD	NA	NA	NA	NA	NA
WP_019247320.1|4046235_4046886_-	dephospho-CoA kinase	NA	NA	NA	NA	NA
WP_003820519.1|4046888_4047728_-	prepilin peptidase	NA	NA	NA	NA	NA
WP_003815047.1|4047968_4048712_+	copper resistance protein NlpE N-terminal domain-containing protein	NA	NA	NA	NA	NA
WP_003815049.1|4048794_4049142_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003815051.1|4049239_4050082_-	pantoate--beta-alanine ligase	NA	NA	NA	NA	NA
WP_003815053.1|4050126_4051014_-	segregation/condensation protein A	NA	NA	NA	NA	NA
WP_003815055.1|4051040_4051229_-	DUF3460 family protein	NA	NA	NA	NA	NA
WP_010931669.1|4051326_4052784_+	DHA2 family efflux MFS transporter permease subunit	NA	NA	NA	NA	NA
WP_010931670.1|4052770_4054297_+	glycerol kinase GlpK	NA	NA	NA	NA	NA
WP_003815061.1|4054315_4054783_-	CopD family protein	NA	NA	NA	NA	NA
WP_010931671.1|4054782_4055805_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_169507388.1|4055925_4056645_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	39.9	4.7e-34
WP_003815066.1|4056720_4057821_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003815068.1|4057822_4059013_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003815070.1|4059132_4060149_-	amino acid ABC transporter substrate-binding protein	NA	A0A1B1IT51	uncultured_Mediterranean_phage	42.1	1.0e-71
WP_003815073.1|4060467_4061139_+	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	38.2	9.5e-29
WP_010927126.1|4061135_4062044_+	FtsX-like permease family protein	NA	NA	NA	NA	NA
WP_010931672.1|4062255_4062903_+	chemoreceptor glutamine deamidase CheD	NA	NA	NA	NA	NA
WP_010931673.1|4066754_4067831_+	A/G-specific adenine glycosylase	NA	NA	NA	NA	NA
WP_003815084.1|4067841_4068651_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003815086.1|4068740_4069514_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_010930363.1|4069696_4070647_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_077274100.1|4070535_4071558_+	CoA transferase	NA	NA	NA	NA	NA
WP_010931674.1|4071547_4072702_+	CoA transferase	NA	NA	NA	NA	NA
WP_010931675.1|4072741_4074154_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_019247370.1|4074278_4075145_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931677.1|4075146_4075971_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_023853488.1|4075967_4076729_+	nitroreductase	NA	M1I6Q5	Acanthocystis_turfacea_Chlorella_virus	31.0	2.0e-19
WP_003808010.1|4076809_4077496_-	TetR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931679.1|4077669_4078677_+	hydroxymethylglutaryl-CoA lyase	NA	NA	NA	NA	NA
WP_003819309.1|4078673_4079453_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010931680.1|4079510_4080773_+	CoA transferase	NA	NA	NA	NA	NA
WP_010929591.1|4081319_4082270_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
