The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP010259	Bordetella pertussis strain I518 chromosome, complete genome	4105350	27282	70036	4105350	transposase,tRNA	Synechococcus_phage(50.0%)	41	NA	NA
WP_010930363.1|27282_28233_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023995007.1|28314_28650_-	CoA transferase	NA	NA	NA	NA	NA
WP_010929578.1|28674_29109_-	OB-fold domain-containing protein	NA	NA	NA	NA	NA
WP_019247164.1|29141_30359_-	thiolase family protein	NA	NA	NA	NA	NA
WP_010929580.1|30364_30862_-	MaoC family dehydratase	NA	NA	NA	NA	NA
WP_019247165.1|31069_32005_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929582.1|32214_33006_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010929583.1|33048_34470_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_010929584.1|34625_35576_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814398.1|35572_36763_-	MFS transporter	NA	NA	NA	NA	NA
WP_010929585.1|37012_37924_+|tRNA	glycine--tRNA ligase subunit alpha	tRNA	NA	NA	NA	NA
WP_010929586.1|37925_40064_+|tRNA	glycine--tRNA ligase subunit beta	tRNA	NA	NA	NA	NA
WP_003814404.1|40060_40600_+	D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase	NA	NA	NA	NA	NA
WP_003814405.1|40603_41332_+	1-acyl-sn-glycerol-3-phosphate acyltransferase	NA	NA	NA	NA	NA
WP_010929587.1|41318_42212_+	M48 family metallopeptidase	NA	NA	NA	NA	NA
WP_019247766.1|42282_42678_+	lactoylglutathione lyase	NA	NA	NA	NA	NA
WP_003814412.1|42687_43218_+	peptide deformylase	NA	E3SLL2	Synechococcus_phage	35.4	3.7e-12
WP_010929588.1|43663_44614_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929589.1|45200_45749_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815265.1|45720_45957_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003815255.1|46084_46978_+	AEC family transporter	NA	NA	NA	NA	NA
WP_010929590.1|48147_49395_+	homoserine O-acetyltransferase	NA	NA	NA	NA	NA
WP_003817748.1|49391_50006_+	methionine biosynthesis protein MetW	NA	NA	NA	NA	NA
WP_010929591.1|50141_51092_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_029443813.1|51134_52391_+	muropeptide transporter	NA	NA	NA	NA	NA
WP_010929592.1|53622_54357_-	aspartate/glutamate racemase family protein	NA	NA	NA	NA	NA
WP_019247224.1|54362_54953_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.6	3.2e-20
WP_003817737.1|54977_55667_-	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_023852650.1|55663_56425_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010929594.1|56504_57404_-	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_005012808.1|57497_58448_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929595.1|59248_60475_-	type II toxin-antitoxin system HipA family toxin	NA	NA	NA	NA	NA
WP_047122776.1|60474_60888_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010929597.1|61077_62019_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019248755.1|62442_63417_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929599.1|63473_64055_-	DJ-1/PfpI family protein	NA	NA	NA	NA	NA
WP_010929600.1|64067_64370_-	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA	NA
WP_029443770.1|64488_65547_-	2Fe-2S iron-sulfur cluster binding domain-containing protein	NA	NA	NA	NA	NA
WP_019247832.1|65581_66853_-	TRAP transporter large permease	NA	NA	NA	NA	NA
WP_010929603.1|67482_68664_-	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929584.1|69085_70036_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 2
NZ_CP010259	Bordetella pertussis strain I518 chromosome, complete genome	4105350	77634	136108	4105350	transposase,tRNA	Planktothrix_phage(22.22%)	54	NA	NA
WP_005012067.1|77634_78585_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_041166334.1|78659_79604_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929608.1|79600_81475_-	O-antigen biosynthesis protein WlbL	NA	A0A2P1ELS8	Moumouvirus	26.9	2.0e-23
WP_003807102.1|82822_83527_-	O-antigen biosynthesis protein WlbI	NA	NA	NA	NA	NA
WP_010929609.1|83523_84696_-	O-antigen biosynthesis protein WlbH	NA	NA	NA	NA	NA
WP_010929610.1|84891_85485_-	O-antigen biosynthesis protein WlbG	NA	NA	NA	NA	NA
WP_010929611.1|85481_86714_-	O-antigen biosynthesis protein WlbF	NA	NA	NA	NA	NA
WP_010929612.1|86731_87991_-	O-antigen biosynthesis protein WlbE	NA	NA	NA	NA	NA
WP_010929613.1|88014_89103_-	O-antigen biosynthesis protein WlbD	NA	A0A0N9R0B2	Chrysochromulina_ericina_virus	36.3	4.8e-46
WP_010929614.1|89110_90211_-	O-antigen biosynthesis protein WlbC	NA	A0A2K9L0G1	Tupanvirus	29.7	3.3e-31
WP_003807114.1|90214_90790_-	O-antigen biosynthesis protein WlbB	NA	NA	NA	NA	NA
WP_003807115.1|90793_91846_-	O-antigen biosynthesis protein WlbA	NA	NA	NA	NA	NA
WP_010929615.1|91976_92984_+	lipopolysaccharide heptosyltransferase I	NA	NA	NA	NA	NA
WP_010929616.1|92985_94272_+	3-deoxy-D-manno-octulosonic acid transferase	NA	NA	NA	NA	NA
WP_003807124.1|94288_94444_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929617.1|94468_95272_-	type III pantothenate kinase	NA	NA	NA	NA	NA
WP_010929618.1|95268_96135_-	biotin--[acetyl-CoA-carboxylase] ligase	NA	NA	NA	NA	NA
WP_010929619.1|96209_97340_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_003807131.1|97339_98179_+	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	32.4	9.1e-21
WP_010929620.1|99111_99714_+	membrane integrity-associated transporter subunit PqiC	NA	NA	NA	NA	NA
WP_010929621.1|99743_100397_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003807138.1|100529_101786_+	D-alanyl-D-alanine carboxypeptidase	NA	B6DZZ7	Stx2-converting_phage	40.5	6.2e-66
WP_010929622.1|101833_102733_+	D-amino acid aminotransferase	NA	NA	NA	NA	NA
WP_003818417.1|102808_103084_+	YbeD family protein	NA	NA	NA	NA	NA
WP_010929623.1|103091_103754_+	lipoyl(octanoyl) transferase LipB	NA	NA	NA	NA	NA
WP_003807146.1|103815_104817_+	lipoyl synthase	NA	NA	NA	NA	NA
WP_003807148.1|104831_105380_-	dTDP-4-dehydrorhamnose 3,5-epimerase	NA	A0A291LA62	Escherichia_phage	53.4	3.7e-47
WP_010929624.1|105437_106334_-	dTDP-4-dehydrorhamnose reductase	NA	NA	NA	NA	NA
WP_010929625.1|106330_107392_-	dTDP-glucose 4,6-dehydratase	NA	A0A1D7XFE8	Escherichia_phage	44.8	1.6e-78
WP_010929626.1|107427_108378_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929627.1|109277_110471_+	cystathionine beta-lyase	NA	NA	NA	NA	NA
WP_010929628.1|110552_111182_-	thiol:disulfide interchange protein DsbA/DsbL	NA	NA	NA	NA	NA
WP_010927242.1|111243_111927_-	SPOR domain-containing protein	NA	NA	NA	NA	NA
WP_023853376.1|111936_113619_-|tRNA	arginine--tRNA ligase	tRNA	NA	NA	NA	NA
WP_003815933.1|113906_114254_+	DUF1840 domain-containing protein	NA	NA	NA	NA	NA
WP_003815930.1|114344_114662_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931363.1|114944_115961_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003815929.1|116036_116837_-	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
WP_003815927.1|116833_117709_-	sugar ABC transporter permease	NA	NA	NA	NA	NA
WP_010929633.1|117719_119012_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929634.1|119054_120095_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.7	6.0e-22
WP_010929635.1|120200_121022_-	phosphodiesterase	NA	NA	NA	NA	NA
WP_005012067.1|121122_122073_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014905488.1|122171_123077_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	31.7	9.8e-21
WP_003815918.1|123073_123907_-	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_010929637.1|124743_125754_-	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_019247800.1|125750_126140_-	substrate-binding domain-containing protein	NA	NA	NA	NA	NA
WP_010929638.1|127033_128287_+	amidase	NA	NA	NA	NA	NA
WP_010929639.1|128377_130078_-	2-isopropylmalate synthase	NA	NA	NA	NA	NA
WP_010929640.1|130504_131152_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023853393.1|131150_132590_+	RNA polymerase factor sigma-54	NA	NA	NA	NA	NA
WP_003815905.1|132682_132985_+	bacterioferritin-associated ferredoxin	NA	NA	NA	NA	NA
WP_010929512.1|133012_133891_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|135157_136108_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 3
NZ_CP010259	Bordetella pertussis strain I518 chromosome, complete genome	4105350	164893	225404	4105350	protease,transposase,tRNA	Diachasmimorpha_longicaudata_entomopoxvirus(11.11%)	51	NA	NA
WP_005015810.1|164893_165844_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929659.1|167287_168190_-	YgcG family protein	NA	NA	NA	NA	NA
WP_003815889.1|168167_168797_-	LemA family protein	NA	NA	NA	NA	NA
WP_010929660.1|169079_170510_+	DEAD/DEAH box helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	29.8	5.8e-44
WP_010929661.1|170543_171173_+	LysE family transporter	NA	NA	NA	NA	NA
WP_003815895.1|171221_172829_+	peptide chain release factor 3	NA	A0A2K9L6L3	Tupanvirus	37.8	9.3e-14
WP_010929663.1|172853_173537_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815898.1|173618_174095_-	bacterioferritin	NA	NA	NA	NA	NA
WP_010929591.1|174301_175252_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929664.1|176367_176895_+	META domain-containing protein	NA	NA	NA	NA	NA
WP_010929665.1|176986_177802_+	META and DUF4377 domain-containing protein	NA	NA	NA	NA	NA
WP_003808370.1|177862_178597_+	sulfurtransferase	NA	NA	NA	NA	NA
WP_010929666.1|178634_180713_-|tRNA	methionine--tRNA ligase	tRNA	A0A1V0SHR2	Klosneuvirus	23.6	1.5e-27
WP_003808374.1|180962_181235_-	hypothetical protein	NA	NA	NA	NA	NA
WP_033446322.1|181336_182422_+	iron-sulfur cluster carrier protein ApbC	NA	NA	NA	NA	NA
WP_010929668.1|182425_184330_+	BamA/TamA family outer membrane protein	NA	NA	NA	NA	NA
WP_014486044.1|184326_188001_+	translocation/assembly module TamB domain-containing protein	NA	NA	NA	NA	NA
WP_010929670.1|188061_188625_+	dCTP deaminase	NA	S5VM63	Pseudomonas_phage	75.3	2.6e-72
WP_003808385.1|188632_189055_-	VOC family protein	NA	NA	NA	NA	NA
WP_010929671.1|189082_189502_-	VOC family protein	NA	NA	NA	NA	NA
WP_076879599.1|189530_190004_-	GNAT family N-acetyltransferase	NA	Q9AZG4	Lactococcus_phage	31.1	2.2e-11
WP_003808391.1|190103_190601_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003808393.1|190755_193026_+	arginine/lysine/ornithine decarboxylase	NA	NA	NA	NA	NA
WP_010929672.1|193074_194307_+	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010929591.1|194405_195356_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929673.1|195458_196094_+	superoxide dismutase	NA	Q56AR7	Bacillus_thuringiensis_phage	73.8	2.8e-83
WP_019248671.1|196090_196984_+	ZIP family metal transporter	NA	NA	NA	NA	NA
WP_010929675.1|197378_198479_+	glycine cleavage system aminomethyltransferase GcvT	NA	NA	NA	NA	NA
WP_010929676.1|198560_198935_+	glycine cleavage system protein GcvH	NA	NA	NA	NA	NA
WP_010929677.1|198994_201859_+	aminomethyl-transferring glycine dehydrogenase	NA	E3SN07	Prochlorococcus_phage	51.4	1.2e-261
WP_010929678.1|202003_202744_-	FadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929679.1|202813_204025_+	CoA transferase	NA	NA	NA	NA	NA
WP_010929680.1|204053_205022_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931070.1|205635_206586_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929699.1|206742_207066_+	phosphate starvation-inducible protein	NA	NA	NA	NA	NA
WP_023853200.1|207170_208211_-	cyclase family protein	NA	NA	NA	NA	NA
WP_010929697.1|208216_208996_-	3-oxoadipate enol-lactonase	NA	NA	NA	NA	NA
WP_003807672.1|209041_209338_-	YciI family protein	NA	NA	NA	NA	NA
WP_003807674.1|209363_209639_-	muconolactone Delta-isomerase	NA	NA	NA	NA	NA
WP_003819086.1|209695_210340_-	CoA transferase subunit B	NA	NA	NA	NA	NA
WP_010929696.1|210339_211026_-	3-oxoacid CoA-transferase subunit A	NA	NA	NA	NA	NA
WP_010929695.1|211155_212007_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929694.1|212057_212783_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010929693.1|212814_214164_-	short-chain fatty acid transporter	NA	NA	NA	NA	NA
WP_010929692.1|214275_215208_-	3-hydroxyacyl-CoA dehydrogenase family protein	NA	NA	NA	NA	NA
WP_033455792.1|215665_218461_-|protease	serine protease autotransporter SphB1	protease	NA	NA	NA	NA
WP_010929690.1|219054_221997_-	phosphoenolpyruvate carboxylase	NA	NA	NA	NA	NA
WP_010929689.1|222068_222788_+	7-cyano-7-deazaguanine synthase QueC	NA	A0A0A0RPC6	Escherichia_phage	43.9	8.0e-50
WP_010929688.1|222826_223375_-	N-acetyltransferase	NA	A0A2H4J136	uncultured_Caudovirales_phage	41.7	1.2e-21
WP_010929687.1|223529_224429_+	virginiamycin B lyase	NA	NA	NA	NA	NA
WP_005012808.1|224453_225404_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 4
NZ_CP010259	Bordetella pertussis strain I518 chromosome, complete genome	4105350	233336	287973	4105350	protease,transposase,tRNA	Bacillus_phage(25.0%)	49	NA	NA
WP_005012067.1|233336_234287_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010927663.1|234373_235324_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930742.1|235320_236271_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929700.1|236369_237167_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_003814363.1|238116_238527_+	carboxymuconolactone decarboxylase family protein	NA	NA	NA	NA	NA
WP_003814358.1|239548_240292_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814356.1|240335_241379_-	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003814355.1|241549_243652_+	TRAP transporter large permease subunit	NA	NA	NA	NA	NA
WP_003814351.1|245062_246019_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929701.1|246037_246529_-	2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase	NA	NA	NA	NA	NA
WP_010929702.1|246525_247881_-	polynucleotide adenylyltransferase PcnB	NA	A0A1B1IVF3	uncultured_Mediterranean_phage	36.8	3.4e-25
WP_010929703.1|247881_248580_-	HAD-IB family hydrolase	NA	NA	NA	NA	NA
WP_010929704.1|248576_249278_-	DnaA regulatory inactivator Hda	NA	NA	NA	NA	NA
WP_003814339.1|249530_250580_+	phosphoribosylformylglycinamidine cyclo-ligase	NA	Q58MH8	Prochlorococcus_phage	43.6	5.6e-68
WP_003814337.1|250685_251627_-|tRNA	tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA	tRNA	NA	NA	NA	NA
WP_010929705.1|251623_253513_-	DNA mismatch repair endonuclease MutL	NA	A0A1B2LRQ5	Wolbachia_phage	32.8	3.3e-79
WP_003814332.1|253599_254238_+	VTT domain-containing protein	NA	NA	NA	NA	NA
WP_019247543.1|254380_255766_-	N-acetylmuramoyl-L-alanine amidase	NA	A0A2H4JCM7	uncultured_Caudovirales_phage	30.3	4.5e-17
WP_010929706.1|255696_256233_-|tRNA	bifunctional alanine racemase/tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE	tRNA	NA	NA	NA	NA
WP_010929707.1|256384_257776_+	class II fumarate hydratase	NA	NA	NA	NA	NA
WP_010929708.1|257792_258773_-	AEC family transporter	NA	NA	NA	NA	NA
WP_003814324.1|258908_259892_+	tripartite tricarboxylate transporter substrate binding protein BugE	NA	NA	NA	NA	NA
WP_010929709.1|259956_260856_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814321.1|260962_262717_+	gamma-glutamyltransferase	NA	NA	NA	NA	NA
WP_010929710.1|262724_263849_-	CoA transferase	NA	NA	NA	NA	NA
WP_010929711.1|263862_264843_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929591.1|265573_266524_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929712.1|267083_267629_+	GbsR/MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929713.1|267712_269332_+	cytochrome d ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
WP_004567834.1|269347_270502_+	cytochrome d ubiquinol oxidase subunit II	NA	NA	NA	NA	NA
WP_003817696.1|270515_270641_+	cytochrome bd-I oxidase subunit CydX	NA	NA	NA	NA	NA
WP_010929714.1|270637_272389_+	thiol reductant ABC exporter subunit CydD	NA	W8CYL7	Bacillus_phage	23.8	3.4e-09
WP_010929715.1|272385_274065_+	thiol reductant ABC exporter subunit CydC	NA	W8CYL7	Bacillus_phage	27.6	3.6e-16
WP_010929716.1|274127_274676_+	adenine phosphoribosyltransferase	NA	A0A1V0SKE5	Klosneuvirus	43.1	1.3e-28
WP_010929717.1|275818_276097_+	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|277140_278091_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|278189_279140_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_181902617.1|279157_279304_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929718.1|279417_279579_+	DUF4224 domain-containing protein	NA	NA	NA	NA	NA
WP_010929719.1|279586_279727_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815821.1|280245_280695_-|protease	ClpXP protease specificity-enhancing factor	protease	NA	NA	NA	NA
WP_003815819.1|280704_281316_-	glutathione S-transferase N-terminal domain-containing protein	NA	NA	NA	NA	NA
WP_019247426.1|281474_282329_-	cytochrome c1	NA	NA	NA	NA	NA
WP_003815816.1|282348_283731_-	cytochrome bc complex cytochrome b subunit	NA	NA	NA	NA	NA
WP_003815815.1|283795_284437_-	ubiquinol-cytochrome c reductase iron-sulfur subunit	NA	NA	NA	NA	NA
WP_010929721.1|284576_285035_+	large conductance mechanosensitive channel protein MscL	NA	NA	NA	NA	NA
WP_010927226.1|285059_285836_-	Nif3-like dinuclear metal center hexameric protein	NA	NA	NA	NA	NA
WP_014906092.1|285889_287026_+	trypsin-like peptidase domain-containing protein	NA	W5SAB9	Pithovirus	31.2	1.2e-07
WP_005015810.1|287022_287973_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 5
NZ_CP010259	Bordetella pertussis strain I518 chromosome, complete genome	4105350	391906	449415	4105350	transposase	Orpheovirus(14.29%)	50	NA	NA
WP_005012067.1|391906_392857_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010927231.1|392993_393911_+	reductase	NA	NA	NA	NA	NA
WP_003815842.1|393907_394156_+	glutaredoxin family protein	NA	NA	NA	NA	NA
WP_003815840.1|394152_395358_+	CoA transferase	NA	NA	NA	NA	NA
WP_014486045.1|395430_396426_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_014486046.1|396448_397669_-	CoA transferase	NA	NA	NA	NA	NA
WP_014486047.1|397665_398310_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019248476.1|400040_400850_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_014486048.1|401154_402108_+	thioredoxin-disulfide reductase	NA	A0A2I2L5E1	Orpheovirus	42.5	5.6e-59
WP_014486049.1|402206_403190_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014486050.1|403116_403818_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_014486051.1|403866_404637_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_019247259.1|404633_405812_-	CoA transferase	NA	NA	NA	NA	NA
WP_014486052.1|405979_407686_-	thiamine pyrophosphate-requiring protein	NA	NA	NA	NA	NA
WP_014486053.1|407682_408579_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_014486054.1|408619_410209_-	rhodanese homology domain-containing protein	NA	NA	NA	NA	NA
WP_003807867.1|410258_411251_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003807865.1|411319_411919_-	hypothetical protein	NA	NA	NA	NA	NA
WP_014486055.1|412379_413360_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929577.1|413435_414386_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_047122777.1|414474_415389_+	DMT family transporter	NA	NA	NA	NA	NA
WP_010929782.1|415385_416045_+	LysE family translocator	NA	NA	NA	NA	NA
WP_003814709.1|416134_417058_+	alpha/beta fold hydrolase	NA	A0A1C9C5K3	Heterosigma_akashiwo_virus	27.2	4.8e-07
WP_010929783.1|417063_417519_-	multidrug/biocide efflux PACE transporter	NA	NA	NA	NA	NA
WP_010929784.1|417515_418619_-	ChbG/HpnK family deacetylase	NA	NA	NA	NA	NA
WP_157734656.1|418577_418847_+	GtrA family protein	NA	NA	NA	NA	NA
WP_010927086.1|418806_420426_-	glycosyltransferase family 39 protein	NA	NA	NA	NA	NA
WP_003814720.1|420422_421481_-	glycosyltransferase family 2 protein	NA	I1TED8	Salmonella_phage	40.5	2.8e-59
WP_033446199.1|421610_422105_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_022997984.1|422197_423175_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929785.1|423370_424576_+	sodium/glutamate symporter	NA	NA	NA	NA	NA
WP_010929786.1|424572_426084_+	TAXI family TRAP transporter solute-binding subunit	NA	NA	NA	NA	NA
WP_003814726.1|426099_427413_-	short-chain fatty acid transporter	NA	NA	NA	NA	NA
WP_003814728.1|427603_427783_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003814730.1|428192_428927_-	DNA polymerase III subunit epsilon	NA	A0A1X9SH08	Bradyrhizobium_phage	43.8	1.4e-41
WP_010929577.1|431371_432322_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247421.1|432453_432852_-	GTP-binding protein	NA	E4ZFJ7	Streptococcus_phage	44.3	9.0e-19
WP_003814701.1|433262_433733_-	universal stress protein	NA	NA	NA	NA	NA
WP_003820700.1|433821_434166_-	TIGR01244 family phosphatase	NA	NA	NA	NA	NA
WP_010929788.1|434265_435666_-	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
WP_010929789.1|437454_437973_-	MgtC/SapB family protein	NA	G3MA03	Bacillus_virus	38.9	2.1e-12
WP_003814694.1|438083_438839_+	TerC family protein	NA	A0A0R6PEZ3	Moraxella_phage	40.8	2.9e-42
WP_003814691.1|439034_440267_+	CoA transferase	NA	NA	NA	NA	NA
WP_010929791.1|440259_441045_+	crotonase/enoyl-CoA hydratase family protein	NA	NA	NA	NA	NA
WP_003814685.1|441111_442083_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003814681.1|442093_443071_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247419.1|443196_444369_+	acyl-CoA dehydrogenase family protein	NA	NA	NA	NA	NA
WP_010929793.1|444395_445424_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_003814674.1|445489_446683_+	acetyl-CoA C-acyltransferase	NA	NA	NA	NA	NA
WP_005012067.1|448464_449415_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 6
NZ_CP010259	Bordetella pertussis strain I518 chromosome, complete genome	4105350	591469	652660	4105350	protease,transposase	uncultured_Mediterranean_phage(40.0%)	56	NA	NA
WP_005013747.1|591469_592420_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023998122.1|592916_593786_+	phosphonate ABC transporter, permease protein PhnE	NA	NA	NA	NA	NA
WP_010931496.1|593782_594604_+	phosphonate ABC transporter, permease protein PhnE	NA	NA	NA	NA	NA
WP_019247235.1|594803_595295_+	CYTH domain-containing protein	NA	NA	NA	NA	NA
WP_019247236.1|595313_596387_+	CHAD domain-containing protein	NA	NA	NA	NA	NA
WP_023853086.1|596433_597537_-	signal recognition particle-docking protein FtsY	NA	NA	NA	NA	NA
WP_003808577.1|597612_598233_+	16S rRNA (guanine(966)-N(2))-methyltransferase RsmD	NA	NA	NA	NA	NA
WP_003808574.1|598253_598763_+	pantetheine-phosphate adenylyltransferase	NA	A0A1B1IVQ3	uncultured_Mediterranean_phage	42.1	1.2e-28
WP_003808570.1|598817_599069_+	YfhL family 4Fe-4S dicluster ferredoxin	NA	A0A1B1IWY9	uncultured_Mediterranean_phage	53.4	1.6e-18
WP_010931494.1|599132_600266_+	benzoate/H(+) symporter BenE family transporter	NA	NA	NA	NA	NA
WP_003808567.1|600273_600660_-	MOSC N-terminal beta barrel domain-containing protein	NA	NA	NA	NA	NA
WP_010931493.1|600656_603176_-	AsmA family protein	NA	NA	NA	NA	NA
WP_003808563.1|603604_603943_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003808562.1|603939_604446_+	SRPBCC family protein	NA	NA	NA	NA	NA
WP_010931492.1|604507_605308_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931491.1|605418_606360_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931490.1|606453_607989_-	M81 family metallopeptidase	NA	NA	NA	NA	NA
WP_010931489.1|609668_611519_-	dipeptide ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	29.2	1.6e-17
WP_003808549.1|611522_612356_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931488.1|612355_613297_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931487.1|613548_614520_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931486.1|614661_616950_+	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
WP_003808542.1|617256_618165_+	TauD/TfdA family dioxygenase	NA	NA	NA	NA	NA
WP_010931485.1|618219_619185_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931484.1|619259_620921_+	thiamine pyrophosphate-binding protein	NA	NA	NA	NA	NA
WP_010931483.1|620992_621703_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_154698388.1|621669_621834_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|621851_622802_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814152.1|623500_623884_+	membrane protein	NA	NA	NA	NA	NA
WP_010927005.1|623941_624544_+	DUF2946 family protein	NA	NA	NA	NA	NA
WP_003820995.1|624561_624963_-	DoxX family protein	NA	NA	NA	NA	NA
WP_003814158.1|625096_625990_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931481.1|625986_626568_+	NUDIX hydrolase	NA	NA	NA	NA	NA
WP_003814165.1|627362_628097_+	arginyltransferase	NA	NA	NA	NA	NA
WP_010931480.1|628137_629187_+	quinone-dependent dihydroorotate dehydrogenase	NA	NA	NA	NA	NA
WP_003814172.1|629334_629913_-	TIGR01841 family phasin	NA	NA	NA	NA	NA
WP_010931479.1|630299_631277_+	tripartite tricarboxylate transporter substrate binding protein BugD	NA	NA	NA	NA	NA
WP_010931478.1|631370_635765_-	dermonecrotic toxin	NA	NA	NA	NA	NA
WP_003814178.1|635965_636814_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931477.1|636972_637785_-	competence/damage-inducible protein A	NA	NA	NA	NA	NA
WP_005015810.1|637840_638791_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931453.1|638889_639690_-	EI24 domain-containing protein	NA	NA	NA	NA	NA
WP_003814185.1|639751_640135_+	thioredoxin family protein	NA	NA	NA	NA	NA
WP_010931454.1|640146_641580_-	DEAD/DEAH box helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	34.4	1.5e-52
WP_003814188.1|641786_642116_-	AzlD domain-containing protein	NA	NA	NA	NA	NA
WP_010931455.1|642118_642868_-	AzlC family ABC transporter permease	NA	NA	NA	NA	NA
WP_010931456.1|643050_643971_+	branched-chain amino acid transaminase	NA	NA	NA	NA	NA
WP_003814195.1|644017_644230_+	zinc-finger domain-containing protein	NA	NA	NA	NA	NA
WP_010931457.1|644252_644675_+	nuclear transport factor 2 family protein	NA	NA	NA	NA	NA
WP_010931458.1|644691_645792_+	alpha/beta fold hydrolase	NA	NA	NA	NA	NA
WP_010931459.1|645888_647406_-|protease	M48 family metalloprotease	protease	NA	NA	NA	NA
WP_003814203.1|647481_648321_+	UTP--glucose-1-phosphate uridylyltransferase GalU	NA	A0A127AW70	Bacillus_phage	48.9	1.1e-66
WP_003814205.1|648342_649224_-	cytochrome c oxidase assembly protein	NA	NA	NA	NA	NA
WP_003814206.1|649305_650400_-	porin	NA	NA	NA	NA	NA
WP_076879617.1|650693_651644_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_041166340.1|651718_652660_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 7
NZ_CP010259	Bordetella pertussis strain I518 chromosome, complete genome	4105350	657984	704175	4105350	terminase,transposase,tail,tRNA	uncultured_Caudovirales_phage(18.18%)	51	NA	NA
WP_023995141.1|657984_659010_+|tRNA	tRNA dihydrouridine synthase DusB	tRNA	NA	NA	NA	NA
WP_003814221.1|659050_659290_+	DNA-binding protein	NA	NA	NA	NA	NA
WP_010931464.1|659359_660949_+	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase	NA	Q58MG4	Prochlorococcus_phage	47.2	8.7e-65
WP_010931465.1|660948_661497_+	crossover junction endodeoxyribonuclease RuvC	NA	NA	NA	NA	NA
WP_003814226.1|661577_662150_+	Holliday junction branch migration protein RuvA	NA	NA	NA	NA	NA
WP_010927008.1|662168_663080_-	complex I NDUFA9 subunit family protein	NA	NA	NA	NA	NA
WP_003814230.1|663153_664122_-	threo-3-hydroxy-L-aspartate ammonia-lyase	NA	NA	NA	NA	NA
WP_010931466.1|664244_665318_+	Holliday junction branch migration DNA helicase RuvB	NA	A0A127AWE7	Bacillus_phage	25.7	2.3e-08
WP_010931467.1|665322_667143_-	DNA helicase RecQ	NA	L7RCS0	Acanthamoeba_polyphaga_moumouvirus	35.3	3.1e-74
WP_010930800.1|667219_668170_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_033446132.1|668258_668594_+	ASCH domain-containing protein	NA	NA	NA	NA	NA
WP_003819076.1|668727_669378_+	carbonic anhydrase	NA	NA	NA	NA	NA
WP_010931468.1|669399_670818_-	amidase	NA	NA	NA	NA	NA
WP_019248554.1|670887_671643_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019247734.1|671611_672370_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010931471.1|672380_673262_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010931472.1|673278_673986_+	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	25.4	8.2e-07
WP_010931473.1|673988_674747_+	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	24.4	4.4e-14
WP_010931474.1|674956_676699_+	nitrite/sulfite reductase	NA	NA	NA	NA	NA
WP_010925795.1|676691_677216_+	DUF934 domain-containing protein	NA	NA	NA	NA	NA
WP_010931475.1|677255_678050_-	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019248926.1|678217_679291_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|679389_680340_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247378.1|680591_680798_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931451.1|680869_681481_-	S24 family peptidase	NA	NA	NA	NA	NA
WP_023853179.1|682035_682287_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_161633094.1|682279_682969_+	hypothetical protein	NA	NA	NA	NA	NA
WP_023853183.1|682986_683208_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|683225_684176_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247942.1|684815_685301_+|transposase	transposase	transposase	C7U0W1	Enterobacteria_phage	61.5	7.3e-39
WP_010931447.1|685287_686565_+|terminase	terminase large subunit	terminase	A0A1B1P9C9	Acinetobacter_phage	64.7	2.4e-150
WP_010931446.1|686567_687986_+	DUF4055 domain-containing protein	NA	R9TF43	Synechococcus_phage	42.1	2.2e-99
WP_010931445.1|688014_689070_+	hypothetical protein	NA	A0A0H5BBX3	Pseudomonas_phage	50.6	2.6e-97
WP_010931444.1|689075_689318_+	hypothetical protein	NA	A0A0H5AUE5	Pseudomonas_phage	53.2	5.6e-16
WP_010931443.1|689440_690043_+	hypothetical protein	NA	R9TF81	Synechococcus_phage	43.6	7.9e-27
WP_005012808.1|690471_691422_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931442.1|692096_692348_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247789.1|692410_692893_+	hypothetical protein	NA	A0A2H4JE38	uncultured_Caudovirales_phage	37.1	1.8e-13
WP_010931440.1|692894_693095_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931439.1|693094_693490_+	hypothetical protein	NA	A0A2D2W284	Stenotrophomonas_phage	35.0	7.8e-07
WP_010931438.1|693486_693885_+	hypothetical protein	NA	I6PCW1	Cronobacter_phage	38.0	4.2e-16
WP_010931437.1|693881_694304_+	DUF4128 domain-containing protein	NA	NA	NA	NA	NA
WP_010931436.1|694311_694812_+	HNH endonuclease	NA	A0A1I9SEX5	Klebsiella_phage	45.1	4.4e-31
WP_010931435.1|695066_695585_+|tail	phage tail protein	tail	A0A1S5R1H0	Pseudomonas_phage	38.3	5.4e-24
WP_003813412.1|695594_695924_+|tail	phage tail assembly chaperone	tail	A0A2H4J121	uncultured_Caudovirales_phage	44.0	2.9e-15
WP_010931434.1|695941_696232_+	DUF1799 domain-containing protein	NA	A0A2H4JBP7	uncultured_Caudovirales_phage	45.2	3.7e-14
WP_010931433.1|696257_698870_+|tail	phage tail tape measure protein	tail	A0A2H4J107	uncultured_Caudovirales_phage	38.6	4.9e-105
WP_010931432.1|698879_699239_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931431.1|699306_699840_+	DUF1833 family protein	NA	A5A3Q9	Burkholderia_phage	46.9	1.1e-40
WP_010931430.1|699836_700226_+	C40 family peptidase	NA	A0A0G3EYJ9	Achromobacter_phage	50.0	3.0e-35
WP_010931429.1|700218_704175_+	DUF1983 domain-containing protein	NA	A0A0B5A1N2	Achromobacter_phage	40.8	3.9e-215
>prophage 8
NZ_CP010259	Bordetella pertussis strain I518 chromosome, complete genome	4105350	710341	764271	4105350	transposase,tRNA	Planktothrix_phage(50.0%)	46	NA	NA
WP_003814636.1|710341_712072_+|tRNA	proline--tRNA ligase	tRNA	A0A2K9L3R9	Tupanvirus	29.4	4.6e-11
WP_010931419.1|712124_712553_+	tol-pal system-associated acyl-CoA thioesterase	NA	NA	NA	NA	NA
WP_003814641.1|712555_713236_+	protein TolQ	NA	NA	NA	NA	NA
WP_003814643.1|713235_713694_+	protein TolR	NA	NA	NA	NA	NA
WP_010931418.1|713730_714705_+	cell envelope integrity protein TolA	NA	NA	NA	NA	NA
WP_010931417.1|714721_716038_+	Tol-Pal system protein TolB	NA	NA	NA	NA	NA
WP_003814650.1|716069_716567_+	peptidoglycan-associated lipoprotein Pal	NA	NA	NA	NA	NA
WP_003814652.1|716653_717343_+	tol-pal system protein YbgF	NA	NA	NA	NA	NA
WP_010931416.1|717342_718392_+	iron ABC transporter permease	NA	NA	NA	NA	NA
WP_003814657.1|718388_719183_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.6	2.4e-15
WP_019247923.1|719351_719702_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247922.1|719677_720235_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_005012808.1|721364_722315_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929184.1|724452_725682_+	spore maturation protein	NA	NA	NA	NA	NA
WP_003814419.1|725684_727127_-	pyruvate kinase	NA	NA	NA	NA	NA
WP_010931414.1|727231_728377_+	glycerate kinase	NA	W6LM47	Streptococcus_phage	42.2	1.7e-41
WP_010931413.1|728408_729206_-	16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA	NA	NA	NA	NA	NA
WP_010931412.1|729230_730790_-	chaperone SurA	NA	NA	NA	NA	NA
WP_010931411.1|730786_733159_-	LPS-assembly protein LptD	NA	NA	NA	NA	NA
WP_010931410.1|733268_734372_+	phosphotransferase	NA	NA	NA	NA	NA
WP_010931409.1|734371_735064_+	nucleotidyltransferase family protein	NA	NA	NA	NA	NA
WP_003814436.1|735207_735909_+	membrane protein	NA	NA	NA	NA	NA
WP_003814437.1|735893_736271_-	4a-hydroxytetrahydrobiopterin dehydratase	NA	NA	NA	NA	NA
WP_010930179.1|737002_737953_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814441.1|738112_738985_-	oxaloacetate decarboxylase	NA	NA	NA	NA	NA
WP_003814443.1|739325_739544_+	DUF1059 domain-containing protein	NA	NA	NA	NA	NA
WP_019247242.1|739583_740963_-	aminotransferase class III-fold pyridoxal phosphate-dependent enzyme	NA	NA	NA	NA	NA
WP_010929976.1|741004_742402_-	amidase family protein	NA	NA	NA	NA	NA
WP_010927038.1|742441_744094_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.8	6.0e-16
WP_010929977.1|744097_744982_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010929978.1|744981_745923_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010929979.1|746001_747621_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929980.1|747787_748603_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814459.1|748670_749240_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005013747.1|749240_750191_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814461.1|750845_751943_+	carboxynorspermidine decarboxylase	NA	NA	NA	NA	NA
WP_003814462.1|751976_753242_+	saccharopine dehydrogenase family protein	NA	NA	NA	NA	NA
WP_010929591.1|753399_754350_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929982.1|754593_755184_+	polyisoprenoid-binding protein	NA	NA	NA	NA	NA
WP_010929983.1|755199_757644_-	TonB-dependent siderophore receptor	NA	NA	NA	NA	NA
WP_003814467.1|757763_758735_-	FecR family protein	NA	NA	NA	NA	NA
WP_023852739.1|758866_759391_+	sigma-70 family RNA polymerase sigma factor	NA	NA	NA	NA	NA
WP_005012067.1|759350_760301_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929984.1|760522_762718_-	DUF1156 domain-containing protein	NA	NA	NA	NA	NA
WP_010929985.1|762790_763219_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_005012808.1|763320_764271_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 9
NZ_CP010259	Bordetella pertussis strain I518 chromosome, complete genome	4105350	855149	904413	4105350	transposase,holin	Vibrio_phage(33.33%)	40	NA	NA
WP_010929591.1|855149_856100_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247352.1|856117_856672_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003813949.1|856673_857108_+	PaaI family thioesterase	NA	NA	NA	NA	NA
WP_003813951.1|857104_857539_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003813952.1|857522_858326_-	phosphatase PAP2 family protein	NA	NA	NA	NA	NA
WP_003813954.1|858342_859158_-	metallophosphoesterase	NA	NA	NA	NA	NA
WP_019248500.1|859154_859970_-	diacylglycerol kinase	NA	NA	NA	NA	NA
WP_010930033.1|860116_860818_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003813960.1|860845_862804_-|holin	choline BCCT transporter BetT	holin	A0A2I7QNT1	Vibrio_phage	30.3	8.0e-28
WP_005013747.1|862886_863837_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930032.1|864057_864726_+	transcriptional regulator	NA	NA	NA	NA	NA
WP_010930031.1|864849_865956_+	efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
WP_010930030.1|865968_869082_+	MexW/MexI family multidrug efflux RND transporter permease subunit	NA	S5VTK5	Leptospira_phage	21.5	4.5e-57
WP_010930029.1|869078_870572_+	efflux transporter outer membrane subunit	NA	NA	NA	NA	NA
WP_010926969.1|870586_871258_+	transcriptional regulator	NA	NA	NA	NA	NA
WP_003813974.1|871301_871796_-	azurin	NA	NA	NA	NA	NA
WP_010930027.1|871936_872584_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_023853163.1|872687_874736_+	hydantoinase/oxoprolinase family protein	NA	NA	NA	NA	NA
WP_010930025.1|874732_876745_+	hydantoinase B/oxoprolinase family protein	NA	NA	NA	NA	NA
WP_010930024.1|876770_878105_+	FAD-binding oxidoreductase	NA	NA	NA	NA	NA
WP_003813981.1|878213_879206_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003813982.1|879272_881357_-	rhodanese-like domain-containing protein	NA	NA	NA	NA	NA
WP_010930023.1|881381_882353_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930022.1|882481_883513_-	succinylglutamate desuccinylase/aspartoacylase family protein	NA	NA	NA	NA	NA
WP_010930021.1|883516_884668_-	cystathionine beta-lyase	NA	NA	NA	NA	NA
WP_076879542.1|884838_885762_+	transcriptional regulator LrhA	NA	NA	NA	NA	NA
WP_003813987.1|885839_886664_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_023994644.1|886860_887877_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003813988.1|888073_889057_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930019.1|890655_892044_-	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_003813991.1|892074_893064_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003813992.1|893174_894407_-	methylaspartate ammonia-lyase	NA	NA	NA	NA	NA
WP_003813993.1|894688_895489_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930018.1|895511_897743_-|holin	choline BCCT transporter BetT	holin	NA	NA	NA	NA
WP_010930017.1|898530_898977_-	preprotein translocase subunit SecG	NA	NA	NA	NA	NA
WP_003813996.1|898998_899745_-	triose-phosphate isomerase	NA	NA	NA	NA	NA
WP_003813997.1|899888_900866_-	NAD(P)H-quinone oxidoreductase	NA	NA	NA	NA	NA
WP_010930016.1|901499_902111_+	PIN domain-containing protein	NA	K4HZX4	Acidithiobacillus_phage	32.5	3.3e-12
WP_003813999.1|902104_903322_-	threonine ammonia-lyase	NA	NA	NA	NA	NA
WP_005013747.1|903462_904413_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 10
NZ_CP010259	Bordetella pertussis strain I518 chromosome, complete genome	4105350	914025	978965	4105350	transposase	Bacillus_phage(18.18%)	58	NA	NA
WP_005012067.1|914025_914976_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930051.1|914972_916805_-	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	26.4	1.3e-27
WP_010930052.1|917203_917863_+	thiopurine S-methyltransferase	NA	NA	NA	NA	NA
WP_023852837.1|917956_918103_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003809770.1|918211_918379_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930054.1|918390_919071_-	DUF3313 domain-containing protein	NA	NA	NA	NA	NA
WP_010930055.1|919352_920069_+	flagellar brake protein	NA	NA	NA	NA	NA
WP_010930056.1|920083_921385_-	phospholipase A	NA	NA	NA	NA	NA
WP_029444137.1|923529_926418_+	HD domain-containing protein	NA	NA	NA	NA	NA
WP_010930057.1|926641_927994_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_004568140.1|928022_928544_+	acetyl-CoA carboxylase biotin carboxyl carrier protein	NA	NA	NA	NA	NA
WP_003819989.1|928540_929995_+	carboxylase	NA	NA	NA	NA	NA
WP_023852826.1|930029_930278_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247557.1|930383_931259_+	amidohydrolase	NA	NA	NA	NA	NA
WP_010930060.1|931284_932340_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930061.1|932352_933144_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930062.1|933176_934547_+	acetyl-CoA carboxylase biotin carboxylase subunit	NA	NA	NA	NA	NA
WP_005012067.1|935723_936674_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930064.1|936726_936948_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003810832.1|937107_937320_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003810835.1|937439_938558_+	mannose-6-phosphate isomerase	NA	NA	NA	NA	NA
WP_003810839.1|939063_939315_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930066.1|939427_940378_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003810840.1|940374_940758_-	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA	NA
WP_023852913.1|940812_942627_-	ABC transporter ATP-binding protein/permease	NA	W8CYL7	Bacillus_phage	27.9	5.7e-44
WP_010930068.1|942776_943604_+	aldo/keto reductase	NA	A0A2H4PQR8	Staphylococcus_phage	47.4	1.7e-67
WP_010930069.1|943649_944630_+	aldo/keto reductase	NA	NA	NA	NA	NA
WP_003810850.1|944626_944839_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003810851.1|944835_946017_-	PepSY domain-containing protein	NA	NA	NA	NA	NA
WP_019248496.1|946180_946915_+	metallophosphoesterase	NA	A0A2H4J0P0	uncultured_Caudovirales_phage	49.2	1.9e-62
WP_010930071.1|946916_949529_-	PBP1A family penicillin-binding protein	NA	NA	NA	NA	NA
WP_003810859.1|949664_951578_-	S9 family peptidase	NA	NA	NA	NA	NA
WP_010930072.1|952193_952604_-	PaaI family thioesterase	NA	NA	NA	NA	NA
WP_003810865.1|952701_953787_+	DNA polymerase IV	NA	NA	NA	NA	NA
WP_005012067.1|953885_954836_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930088.1|954832_955807_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003821497.1|955931_956843_+	LysR family transcriptional regulator	NA	Q6JIH3	Burkholderia_virus	27.6	4.4e-05
WP_004566317.1|957119_957512_-	type II toxin-antitoxin system HicB family antitoxin	NA	A0A0R6PJ17	Moraxella_phage	45.0	4.8e-25
WP_005012808.1|957641_958592_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930090.1|958621_958804_-	type II toxin-antitoxin system HicA family toxin	NA	A0A1L2JY37	Aeribacillus_phage	56.1	3.7e-12
WP_010930091.1|959576_960758_-	MFS transporter	NA	NA	NA	NA	NA
WP_010930092.1|960973_961651_-	HAD-IA family hydrolase	NA	NA	NA	NA	NA
WP_010930093.1|961647_962373_-	bifunctional 3-demethylubiquinone 3-O-methyltransferase/2-octaprenyl-6-hydroxy phenol methylase	NA	NA	NA	NA	NA
WP_010930094.1|962498_963080_-	OmpA family protein	NA	NA	NA	NA	NA
WP_010930095.1|963450_966132_+	DNA gyrase subunit A	NA	G3M9Z5	Bacillus_virus	33.5	3.2e-104
WP_010930096.1|966131_967265_+	3-phosphoserine/phosphohydroxythreonine transaminase	NA	M1Q1P2	Streptococcus_phage	44.0	6.4e-78
WP_010930097.1|967257_968343_+	prephenate dehydratase	NA	NA	NA	NA	NA
WP_010930098.1|968429_969329_+	prephenate dehydrogenase/arogenate dehydrogenase family protein	NA	NA	NA	NA	NA
WP_010930099.1|969325_970654_+	3-phosphoshikimate 1-carboxyvinyltransferase	NA	NA	NA	NA	NA
WP_010930100.1|970668_971340_+	(d)CMP kinase	NA	NA	NA	NA	NA
WP_010930101.1|971527_973243_+	30S ribosomal protein S1	NA	NA	NA	NA	NA
WP_010930102.1|973244_973604_+	integration host factor subunit beta	NA	NA	NA	NA	NA
WP_010930103.1|973795_974110_+	DUF1049 domain-containing protein	NA	NA	NA	NA	NA
WP_010930104.1|974152_975373_+	lipopolysaccharide assembly protein LapB	NA	NA	NA	NA	NA
WP_010930105.1|975369_976311_+	D-glycero-beta-D-manno-heptose-7-phosphate kinase	NA	A0A2H4N7X4	Lake_Baikal_phage	28.1	1.5e-16
WP_003821513.1|976307_977297_+	ADP-glyceromanno-heptose 6-epimerase	NA	E3SJ87	Synechococcus_phage	34.4	2.2e-26
WP_033446303.1|977331_977916_+	helix-hairpin-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010929591.1|978014_978965_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 11
NZ_CP010259	Bordetella pertussis strain I518 chromosome, complete genome	4105350	998370	1061521	4105350	transposase	Enterococcus_phage(16.67%)	54	NA	NA
WP_005012067.1|998370_999321_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930118.1|999425_1000475_+	NADP(H)-dependent aldo-keto reductase	NA	NA	NA	NA	NA
WP_010929632.1|1000612_1001629_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010926548.1|1003137_1003710_-	chorismate lyase	NA	NA	NA	NA	NA
WP_010930119.1|1003769_1004501_+	rRNA pseudouridine synthase	NA	NA	NA	NA	NA
WP_029443805.1|1004552_1005470_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930121.1|1006277_1009457_+	efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_014486063.1|1009453_1010836_+	efflux transporter outer membrane subunit	NA	NA	NA	NA	NA
WP_010930123.1|1010905_1011157_-	GlsB/YeaQ/YmgE family stress response membrane protein	NA	NA	NA	NA	NA
WP_010930124.1|1011302_1011917_-	SCO family protein	NA	NA	NA	NA	NA
WP_019248379.1|1012103_1014218_-	M3 family metallopeptidase	NA	NA	NA	NA	NA
WP_003811948.1|1014293_1015145_-	bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD	NA	A0A249XZQ2	Enterococcus_phage	39.8	2.1e-33
WP_010930126.1|1015141_1015768_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_003817147.1|1015764_1017519_-	PAS domain S-box protein	NA	NA	NA	NA	NA
WP_010930127.1|1017811_1020517_+	pyruvate dehydrogenase (acetyl-transferring), homodimeric type	NA	NA	NA	NA	NA
WP_010930128.1|1020529_1022191_+	dihydrolipoyllysine-residue acetyltransferase	NA	NA	NA	NA	NA
WP_010930129.1|1022203_1023994_+	dihydrolipoyl dehydrogenase	NA	A0A2K5B2C5	Erysipelothrix_phage	25.2	2.4e-39
WP_003817151.1|1024215_1025391_-	FliC/FljB family flagellin	NA	NA	NA	NA	NA
WP_010929584.1|1025433_1026384_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930130.1|1026482_1027223_-	16S rRNA (uracil(1498)-N(3))-methyltransferase	NA	NA	NA	NA	NA
WP_010930131.1|1027417_1029454_+	transketolase	NA	NA	NA	NA	NA
WP_010930132.1|1029471_1030482_+	type I glyceraldehyde-3-phosphate dehydrogenase	NA	NA	NA	NA	NA
WP_010930133.1|1030599_1031793_+	phosphoglycerate kinase	NA	NA	NA	NA	NA
WP_010930134.1|1031822_1032596_-	enoyl-ACP reductase FabI	NA	NA	NA	NA	NA
WP_010930135.1|1032592_1033783_-	acetate kinase	NA	NA	NA	NA	NA
WP_003809454.1|1033808_1034747_-	phosphate acetyltransferase	NA	NA	NA	NA	NA
WP_010930136.1|1034743_1037092_-	DUF3141 domain-containing protein	NA	NA	NA	NA	NA
WP_010930137.1|1037246_1037888_-	glutathione transferase	NA	NA	NA	NA	NA
WP_023853531.1|1037991_1039125_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994624.1|1039217_1039370_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930138.1|1039401_1039950_-	DinB family protein	NA	NA	NA	NA	NA
WP_003819814.1|1039968_1040454_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_010930139.1|1040631_1041570_+	DnaJ domain-containing protein	NA	A0A0P0YMJ9	Yellowstone_lake_phycodnavirus	24.1	5.6e-11
WP_003809467.1|1041572_1041890_+	MerR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247197.1|1041935_1042880_+	AzlC family ABC transporter permease	NA	NA	NA	NA	NA
WP_010930141.1|1044560_1045211_+	molybdopterin adenylyltransferase	NA	NA	NA	NA	NA
WP_003809479.1|1045264_1045600_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930142.1|1045596_1046457_+	M23 family metallopeptidase	NA	A0A292GJG6	Xanthomonas_phage	36.1	2.6e-15
WP_003819817.1|1046473_1046755_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003809486.1|1046828_1047092_-	translation initiation factor IF-1	NA	NA	NA	NA	NA
WP_005012067.1|1047335_1048286_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811933.1|1048584_1049322_-	RNA polymerase sigma factor FliA	NA	NA	NA	NA	NA
WP_010930143.1|1049757_1050081_+	flagellar transcriptional regulator FlhD	NA	NA	NA	NA	NA
WP_003811929.1|1050115_1050676_+	flagellar transcriptional regulator FlhC	NA	NA	NA	NA	NA
WP_003811927.1|1050796_1051672_+	flagellar motor stator protein MotA	NA	NA	NA	NA	NA
WP_003817154.1|1051684_1052632_+	flagellar motor protein MotB	NA	NA	NA	NA	NA
WP_019247393.1|1052733_1053027_+	response regulator	NA	NA	NA	NA	NA
WP_010930144.1|1053053_1055111_+	chemotaxis protein CheA	NA	NA	NA	NA	NA
WP_003811919.1|1055125_1055626_+	chemotaxis protein CheW	NA	NA	NA	NA	NA
WP_010930145.1|1055699_1057406_+	Tar ligand binding domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	41.7	1.4e-12
WP_010930146.1|1058269_1059322_+	chemotaxis response regulator protein-glutamate methylesterase	NA	NA	NA	NA	NA
WP_003811911.1|1059374_1059764_+	chemotaxis response regulator CheY	NA	Q56AR1	Bacillus_thuringiensis_phage	33.3	5.7e-10
WP_003817162.1|1059772_1060405_+	protein phosphatase CheZ	NA	NA	NA	NA	NA
WP_010931363.1|1060504_1061521_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
>prophage 12
NZ_CP010259	Bordetella pertussis strain I518 chromosome, complete genome	4105350	1067505	1126519	4105350	protease,transposase,tRNA,holin	uncultured_Mediterranean_phage(37.5%)	49	NA	NA
WP_015041211.1|1067505_1068933_-|tRNA	tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB	tRNA	NA	NA	NA	NA
WP_010931363.1|1069870_1070887_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003809411.1|1071219_1072155_-	protein translocase subunit SecF	NA	A0A1B1IVP7	uncultured_Mediterranean_phage	35.5	3.0e-41
WP_010930154.1|1072204_1074085_-	protein translocase subunit SecD	NA	NA	NA	NA	NA
WP_003809416.1|1074151_1074496_-	preprotein translocase subunit YajC	NA	A0A1B1IVR5	uncultured_Mediterranean_phage	40.4	1.0e-10
WP_010930155.1|1074640_1075777_-|tRNA	tRNA guanosine(34) transglycosylase Tgt	tRNA	A0A1B1IVQ4	uncultured_Mediterranean_phage	44.4	1.9e-85
WP_023853534.1|1075773_1076847_-|tRNA	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	tRNA	NA	NA	NA	NA
WP_003809423.1|1077004_1078441_+	D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase	NA	NA	NA	NA	NA
WP_010930157.1|1078531_1079173_+	uracil phosphoribosyltransferase	NA	NA	NA	NA	NA
WP_023853536.1|1079508_1080525_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010930160.1|1083671_1085093_-	uroporphyrinogen-III C-methyltransferase	NA	NA	NA	NA	NA
WP_003809431.1|1085356_1086073_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003809432.1|1086157_1086475_+	DUF883 domain-containing protein	NA	NA	NA	NA	NA
WP_003819794.1|1086515_1086929_+|holin	phage holin family protein	holin	NA	NA	NA	NA
WP_010930161.1|1086930_1087290_+	hypothetical protein	NA	NA	NA	NA	NA
WP_023853525.1|1087332_1088877_-	4-hydroxy-3-polyprenylbenzoate decarboxylase	NA	NA	NA	NA	NA
WP_010930163.1|1088960_1089791_+	lytic transglycosylase domain-containing protein	NA	NA	NA	NA	NA
WP_010930164.1|1089825_1090980_-	pyridoxal phosphate-dependent aminotransferase	NA	NA	NA	NA	NA
WP_010930165.1|1091022_1091895_+	hypothetical protein	NA	NA	NA	NA	NA
WP_014486065.1|1092011_1094300_+	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
WP_003809441.1|1095506_1095971_+	barstar family protein	NA	NA	NA	NA	NA
WP_005013747.1|1095997_1096948_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_154698393.1|1096965_1097103_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930167.1|1097315_1098092_-	phosphate ABC transporter ATP-binding protein PstB	NA	G9BWD6	Planktothrix_phage	28.7	4.3e-17
WP_003809638.1|1098136_1098994_-	phosphate ABC transporter permease PstA	NA	NA	NA	NA	NA
WP_010930169.1|1099015_1100032_-	phosphate ABC transporter permease subunit PstC	NA	NA	NA	NA	NA
WP_014486066.1|1100166_1101207_-	phosphate ABC transporter substrate-binding protein PstS	NA	M4QHS4	Cyanophage	40.2	2.1e-51
WP_010930171.1|1101401_1103483_-	polyphosphate kinase 1	NA	NA	NA	NA	NA
WP_010930172.1|1103718_1105212_+	exopolyphosphatase	NA	NA	NA	NA	NA
WP_003809629.1|1105442_1106237_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_003819875.1|1106457_1107816_-	phosphoglucosamine mutase	NA	NA	NA	NA	NA
WP_010930173.1|1107812_1108655_-	dihydropteroate synthase	NA	A0A0B5J4J5	Pandoravirus	32.5	3.2e-26
WP_010930174.1|1108673_1110560_-|protease	ATP-dependent zinc metalloprotease FtsH	protease	M4QMW8	Micromonas_pusilla_virus	41.5	1.4e-109
WP_162096758.1|1110501_1110753_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930175.1|1110797_1111430_-	RlmE family RNA methyltransferase	NA	NA	NA	NA	NA
WP_003809618.1|1111448_1112051_+	YhbY family RNA-binding protein	NA	NA	NA	NA	NA
WP_010929591.1|1112202_1113153_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_161633091.1|1113733_1114441_+	DUF192 domain-containing protein	NA	NA	NA	NA	NA
WP_003812707.1|1114799_1115786_-	homoserine kinase	NA	NA	NA	NA	NA
WP_010930178.1|1115925_1116939_+|tRNA	tRNA dihydrouridine(20/20a) synthase DusA	tRNA	NA	NA	NA	NA
WP_005012067.1|1116935_1117886_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_155120815.1|1117903_1118044_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003812703.1|1117998_1118457_-	CBS domain-containing protein	NA	NA	NA	NA	NA
WP_003812701.1|1118493_1119807_-	YihY family inner membrane protein	NA	NA	NA	NA	NA
WP_010930180.1|1119824_1120196_+	DUF2069 domain-containing protein	NA	NA	NA	NA	NA
WP_019248549.1|1120192_1121656_+	YdiU family protein	NA	A0A075BSJ0	Microcystis_phage	32.5	1.7e-43
WP_010930182.1|1121796_1122525_+	response regulator transcription factor	NA	NA	NA	NA	NA
WP_010930183.1|1122506_1125356_-	EAL domain-containing protein	NA	NA	NA	NA	NA
WP_010929591.1|1125568_1126519_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 13
NZ_CP010259	Bordetella pertussis strain I518 chromosome, complete genome	4105350	1317956	1386443	4105350	transposase	Planktothrix_phage(33.33%)	58	NA	NA
WP_005012808.1|1317956_1318907_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930283.1|1319675_1320314_-	glutathione S-transferase	NA	NA	NA	NA	NA
WP_019247793.1|1321203_1321650_+	aspartate/glutamate racemase family protein	NA	NA	NA	NA	NA
WP_010930284.1|1321731_1322433_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.4	1.3e-17
WP_003811277.1|1322433_1323201_-	high-affinity branched-chain amino acid ABC transporter ATP-binding protein LivG	NA	A0A2H4PQG7	Staphylococcus_phage	26.4	1.2e-14
WP_010930285.1|1323197_1324436_-	high-affinity branched-chain amino acid ABC transporter permease LivM	NA	NA	NA	NA	NA
WP_003811272.1|1324435_1325362_-	high-affinity branched-chain amino acid ABC transporter permease LivH	NA	NA	NA	NA	NA
WP_010930286.1|1325464_1326580_-	branched-chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_005015810.1|1326595_1327546_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930287.1|1327899_1328481_-	queuosine precursor transporter	NA	A0A2I7SAW6	Vibrio_phage	37.3	9.4e-17
WP_003811267.1|1328477_1329311_-	pyrroline-5-carboxylate reductase	NA	NA	NA	NA	NA
WP_010930288.1|1329521_1330835_+	sn-glycerol-3-phosphate ABC transporter substrate-binding protein UgpB	NA	NA	NA	NA	NA
WP_003811262.1|1331011_1331893_+	sn-glycerol-3-phosphate ABC transporter permease UgpA	NA	NA	NA	NA	NA
WP_003811259.1|1331912_1332764_+	sn-glycerol-3-phosphate ABC transporter permease UgpE	NA	NA	NA	NA	NA
WP_010930289.1|1332816_1333905_+	sn-glycerol-3-phosphate import ATP-binding protein UgpC	NA	G9BWD6	Planktothrix_phage	31.2	2.2e-19
WP_010930290.1|1334015_1335143_-	branched-chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003811244.1|1335377_1335989_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_005012808.1|1336087_1337038_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811293.1|1337259_1337637_-	DUF423 domain-containing protein	NA	NA	NA	NA	NA
WP_003811295.1|1337784_1338282_+	DUF2384 domain-containing protein	NA	NA	NA	NA	NA
WP_010930291.1|1338278_1338806_+	RES family NAD+ phosphorylase	NA	NA	NA	NA	NA
WP_003811298.1|1338939_1339755_+	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930292.1|1339767_1340949_-	alpha-hydroxy-acid oxidizing protein	NA	NA	NA	NA	NA
WP_003811301.1|1340996_1341890_-	phosphatidylserine decarboxylase	NA	NA	NA	NA	NA
WP_010930293.1|1342016_1342487_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930294.1|1342612_1343440_-	DUF3298 domain-containing protein	NA	NA	NA	NA	NA
WP_003811306.1|1343468_1344245_-	lipoate--protein ligase family protein	NA	NA	NA	NA	NA
WP_023852802.1|1344241_1344517_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930295.1|1344531_1344996_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_010930296.1|1345007_1345709_-	glutathione S-transferase N-terminal domain-containing protein	NA	NA	NA	NA	NA
WP_003811310.1|1345818_1346319_-	glutathione peroxidase	NA	Q6VZR0	Canarypox_virus	38.4	4.7e-25
WP_010930297.1|1346401_1347580_-	DUF1501 domain-containing protein	NA	NA	NA	NA	NA
WP_003811313.1|1349207_1349543_+	tetratricopeptide repeat protein	NA	NA	NA	NA	NA
WP_010930298.1|1349730_1351179_+	CoA transferase	NA	NA	NA	NA	NA
WP_023852799.1|1351236_1351581_+	arsenate reductase (glutaredoxin)	NA	A0A2H4J8T1	uncultured_Caudovirales_phage	58.4	3.0e-31
WP_003811316.1|1351687_1352227_-	peroxiredoxin	NA	NA	NA	NA	NA
WP_005012067.1|1352319_1353270_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_162268679.1|1353287_1353527_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247530.1|1354008_1354440_-	YXWGXW repeat-containing protein	NA	NA	NA	NA	NA
WP_010930300.1|1354621_1355026_-	DoxX family protein	NA	NA	NA	NA	NA
WP_010930301.1|1356262_1356586_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247533.1|1356588_1357476_-	aldo/keto reductase	NA	NA	NA	NA	NA
WP_003811322.1|1357508_1357934_-	universal stress protein	NA	NA	NA	NA	NA
WP_019247534.1|1358005_1358359_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003811324.1|1358598_1359105_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930302.1|1359143_1360475_-	transcriptional regulator PtsJ	NA	NA	NA	NA	NA
WP_003811326.1|1360534_1361350_+	YggS family pyridoxal phosphate-dependent enzyme	NA	NA	NA	NA	NA
WP_010930303.1|1361346_1362201_+	pyridoxine/pyridoxal/pyridoxamine kinase	NA	NA	NA	NA	NA
WP_010930304.1|1365263_1367807_-	malto-oligosyltrehalose synthase	NA	NA	NA	NA	NA
WP_010930305.1|1369173_1370928_-	malto-oligosyltrehalose trehalohydrolase	NA	NA	NA	NA	NA
WP_010930306.1|1370924_1373045_-	glycogen debranching protein GlgX	NA	NA	NA	NA	NA
WP_010930307.1|1373049_1375245_-	1,4-alpha-glucan branching protein GlgB	NA	NA	NA	NA	NA
WP_010930308.1|1375241_1378583_-	maltose alpha-D-glucosyltransferase	NA	NA	NA	NA	NA
WP_010930208.1|1381385_1382336_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811361.1|1382401_1382581_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247449.1|1382697_1383453_-	alpha/beta fold hydrolase	NA	NA	NA	NA	NA
WP_010930310.1|1383439_1384585_-	DUF3182 family protein	NA	NA	NA	NA	NA
WP_010930208.1|1385492_1386443_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 14
NZ_CP010259	Bordetella pertussis strain I518 chromosome, complete genome	4105350	1446934	1502421	4105350	protease,transposase	Mollivirus(16.67%)	56	NA	NA
WP_005012067.1|1446934_1447885_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811846.1|1449086_1449533_-	flagellar export protein FliJ	NA	NA	NA	NA	NA
WP_019247562.1|1449525_1451001_-	flagellar protein export ATPase FliI	NA	NA	NA	NA	NA
WP_010930338.1|1450997_1451753_-	flagellar assembly protein FliH	NA	NA	NA	NA	NA
WP_003817203.1|1451745_1452756_-	flagellar motor switch protein FliG	NA	NA	NA	NA	NA
WP_010930339.1|1452745_1454422_-	flagellar M-ring protein FliF	NA	NA	NA	NA	NA
WP_010930340.1|1454734_1455067_+	flagellar hook-basal body complex protein FliE	NA	NA	NA	NA	NA
WP_010930341.1|1455080_1455476_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930342.1|1455485_1455812_-	EscU/YscU/HrcU family type III secretion system export apparatus switch protein	NA	NA	NA	NA	NA
WP_019247563.1|1455808_1456135_-	flagellar hook-length control protein FliK	NA	NA	NA	NA	NA
WP_023997203.1|1456061_1456475_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930343.1|1457079_1457430_-	flagellar protein FliT	NA	NA	NA	NA	NA
WP_010930344.1|1457477_1457906_-	flagellar export chaperone FliS	NA	NA	NA	NA	NA
WP_010930345.1|1457913_1459287_-	flagellar filament capping protein FliD	NA	NA	NA	NA	NA
WP_003817216.1|1459427_1459805_-	flagellar protein FlaG	NA	NA	NA	NA	NA
WP_010930346.1|1460067_1461375_+	bifunctional tetrahydrofolate synthase/dihydrofolate synthase	NA	NA	NA	NA	NA
WP_023852965.1|1461435_1462266_+	SPOR domain-containing protein	NA	NA	NA	NA	NA
WP_003811815.1|1462262_1462751_+	CvpA family protein	NA	NA	NA	NA	NA
WP_003811814.1|1462792_1464313_+	amidophosphoribosyltransferase	NA	A0A0M3SGR2	Mollivirus	43.7	4.8e-97
WP_003811812.1|1464356_1464833_-	disulfide bond formation protein B	NA	NA	NA	NA	NA
WP_010930348.1|1465636_1468234_-	[protein-PII] uridylyltransferase	NA	NA	NA	NA	NA
WP_003811806.1|1468263_1469085_-	type I methionyl aminopeptidase	NA	NA	NA	NA	NA
WP_003811803.1|1469811_1470561_+	30S ribosomal protein S2	NA	NA	NA	NA	NA
WP_010926570.1|1470744_1471623_+	elongation factor Ts	NA	NA	NA	NA	NA
WP_010930349.1|1471720_1472437_+	UMP kinase	NA	NA	NA	NA	NA
WP_003811796.1|1472451_1473012_+	ribosome recycling factor	NA	NA	NA	NA	NA
WP_010930350.1|1473178_1473943_+	di-trans,poly-cis-decaprenylcistransferase	NA	R9W0U9	Flavobacterium_phage	36.1	1.7e-18
WP_010930351.1|1473962_1474820_+	phosphatidate cytidylyltransferase	NA	NA	NA	NA	NA
WP_003811788.1|1474816_1476016_+	1-deoxy-D-xylulose-5-phosphate reductoisomerase	NA	NA	NA	NA	NA
WP_010930352.1|1476055_1477390_+|protease	RIP metalloprotease RseP	protease	NA	NA	NA	NA
WP_010930353.1|1477442_1479779_+	outer membrane protein assembly factor BamA	NA	NA	NA	NA	NA
WP_003811782.1|1479904_1480468_+	OmpH family outer membrane protein	NA	NA	NA	NA	NA
WP_010930354.1|1480476_1481568_+	UDP-3-O-(3-hydroxymyristoyl)glucosamine N-acyltransferase	NA	NA	NA	NA	NA
WP_003811776.1|1481639_1482095_+	3-hydroxyacyl-ACP dehydratase FabZ	NA	NA	NA	NA	NA
WP_010930355.1|1482095_1482890_+	acyl-ACP--UDP-N-acetylglucosamine O-acyltransferase	NA	NA	NA	NA	NA
WP_010930356.1|1482886_1484068_+	lipid-A-disaccharide synthase	NA	NA	NA	NA	NA
WP_003811770.1|1484054_1484660_+	ribonuclease HII	NA	G9E3X7	Emiliania_huxleyi_virus	40.2	8.8e-26
WP_003811768.1|1484656_1485430_+	RNA methyltransferase	NA	NA	NA	NA	NA
WP_010930357.1|1485441_1486269_-	kinase/pyrophosphorylase	NA	NA	NA	NA	NA
WP_010930358.1|1486430_1488794_+	phosphoenolpyruvate synthase	NA	A0A1V0SGR7	Hokovirus	35.9	2.2e-165
WP_010930359.1|1488861_1489581_-	glutamine amidotransferase	NA	NA	NA	NA	NA
WP_003811761.1|1489704_1490130_+	NfeD family protein	NA	NA	NA	NA	NA
WP_005012067.1|1490164_1491115_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811759.1|1491232_1492159_+	paraslipin	NA	NA	NA	NA	NA
WP_010930360.1|1492224_1493382_+	GGDEF domain-containing protein	NA	A0A127AWB9	Bacillus_phage	36.2	2.3e-14
WP_003811754.1|1493362_1493830_-	SsrA-binding protein SmpB	NA	W5RAM5	Staphylococcus_phage	45.1	6.2e-27
WP_005015810.1|1493977_1494928_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811752.1|1494944_1495379_+	type II toxin-antitoxin system RatA family toxin	NA	NA	NA	NA	NA
WP_003811750.1|1495368_1495719_+	RnfH family protein	NA	NA	NA	NA	NA
WP_003811748.1|1495915_1497070_+	acyl-CoA dehydrogenase family protein	NA	NA	NA	NA	NA
WP_003811746.1|1497066_1498239_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003811743.1|1498286_1499180_+	3-hydroxyisobutyrate dehydrogenase	NA	NA	NA	NA	NA
WP_003811741.1|1499225_1499663_+	PaaI family thioesterase	NA	NA	NA	NA	NA
WP_010930362.1|1499722_1500412_+	VIT family protein	NA	NA	NA	NA	NA
WP_010929577.1|1500421_1501372_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_076879624.1|1501470_1502421_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 15
NZ_CP010259	Bordetella pertussis strain I518 chromosome, complete genome	4105350	1597118	1665204	4105350	transposase,tRNA	Streptococcus_virus(11.11%)	59	NA	NA
WP_010930416.1|1597118_1597607_+|tRNA	Cys-tRNA(Pro) deacylase	tRNA	NA	NA	NA	NA
WP_019248504.1|1597724_1598303_+	DJ-1/PfpI family protein	NA	NA	NA	NA	NA
WP_010930418.1|1598408_1598777_+	ribbon-helix-helix domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|1598875_1599826_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994932.1|1599832_1600945_-	D-alanyl-D-alanine endopeptidase	NA	NA	NA	NA	NA
WP_010930419.1|1601631_1602834_+	MFS transporter	NA	NA	NA	NA	NA
WP_004568212.1|1602869_1603016_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930420.1|1603037_1605698_+	PD-(D/E)XK nuclease family protein	NA	NA	NA	NA	NA
WP_010930421.1|1605710_1609115_+	UvrD-helicase domain-containing protein	NA	NA	NA	NA	NA
WP_023995689.1|1609782_1612008_+	DNA polymerase III subunit gamma/tau	NA	A0A1U9WR94	Streptococcus_virus	38.5	1.2e-43
WP_010930423.1|1612054_1612381_+	YbaB/EbfC family nucleoid-associated protein	NA	NA	NA	NA	NA
WP_010930424.1|1612431_1613040_+	recombination protein RecR	NA	NA	NA	NA	NA
WP_005013747.1|1613138_1614089_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930425.1|1614158_1614923_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930426.1|1614919_1615519_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930427.1|1615622_1616474_-	neutral zinc metallopeptidase	NA	A0A1I9SA48	Rhodococcus_phage	35.3	7.0e-37
WP_010928449.1|1616533_1617160_+	threonylcarbamoyl-AMP synthase	NA	NA	NA	NA	NA
WP_005012067.1|1617156_1618107_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019249265.1|1618205_1619318_-	DUF1513 domain-containing protein	NA	NA	NA	NA	NA
WP_019248041.1|1619307_1620309_-	imelysin family protein	NA	NA	NA	NA	NA
WP_019247498.1|1620414_1621926_-	c-type cytochrome	NA	NA	NA	NA	NA
WP_023853587.1|1621922_1623227_-	imelysin	NA	NA	NA	NA	NA
WP_010930431.1|1623338_1623899_-	membrane protein	NA	NA	NA	NA	NA
WP_010930432.1|1624166_1624721_+	NAD(P)H-dependent oxidoreductase	NA	A0A2P0ZL82	Lactobacillus_phage	32.0	1.7e-15
WP_010930433.1|1625176_1625392_-	dodecin domain-containing protein	NA	NA	NA	NA	NA
WP_033446228.1|1625646_1628244_+	DNA mismatch repair protein MutS	NA	A0A1V0SDQ0	Indivirus	22.6	1.5e-21
WP_010930435.1|1628240_1629428_+	cupin domain-containing protein	NA	NA	NA	NA	NA
WP_010930436.1|1630086_1630701_+	serotype 3 fimbrial subunit	NA	NA	NA	NA	NA
WP_010930437.1|1630789_1631917_-	outer membrane protein assembly factor BamC	NA	NA	NA	NA	NA
WP_033446216.1|1631928_1632834_-	4-hydroxy-tetrahydrodipicolinate synthase	NA	NA	NA	NA	NA
WP_005012067.1|1633726_1634677_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930439.1|1634858_1635611_+	glutamine ABC transporter substrate-binding protein GlnH	NA	NA	NA	NA	NA
WP_003811112.1|1635679_1636339_+	glutamine ABC transporter permease GlnP	NA	NA	NA	NA	NA
WP_003811113.1|1636335_1637064_+	glutamine ABC transporter ATP-binding protein GlnQ	NA	G9BWD6	Planktothrix_phage	39.3	3.3e-35
WP_010930440.1|1637076_1639356_-	bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase	NA	A0A1B1IUF0	uncultured_Mediterranean_phage	32.1	5.9e-06
WP_010930441.1|1639380_1639584_-	DNA-directed RNA polymerase subunit omega	NA	NA	NA	NA	NA
WP_010930442.1|1639625_1640258_-	guanylate kinase	NA	A0A218KC48	Bacillus_phage	33.9	2.4e-13
WP_010930443.1|1640393_1641311_-	c-type cytochrome	NA	NA	NA	NA	NA
WP_010930444.1|1641307_1642021_-	c-type cytochrome	NA	NA	NA	NA	NA
WP_003811135.1|1642258_1643029_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_003811137.1|1643033_1643633_-	C40 family peptidase	NA	A0A0A8WF62	Clostridium_phage	41.6	1.4e-20
WP_003811138.1|1643877_1645368_+	AMP nucleosidase	NA	NA	NA	NA	NA
WP_010926696.1|1645426_1645711_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010930445.1|1645848_1646004_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003811148.1|1646276_1647203_-	YicC family protein	NA	NA	NA	NA	NA
WP_003811149.1|1647339_1648080_+	ribonuclease PH	NA	NA	NA	NA	NA
WP_010930446.1|1648246_1649623_-	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_003811152.1|1649804_1650710_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930448.1|1652361_1654164_-	EAL domain-containing protein	NA	NA	NA	NA	NA
WP_010930449.1|1654290_1654932_+	RdgB/HAM1 family non-canonical purine NTP pyrophosphatase	NA	NA	NA	NA	NA
WP_005012808.1|1655030_1655981_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930450.1|1656002_1657223_+	oxygen-independent coproporphyrinogen III oxidase-like protein	NA	NA	NA	NA	NA
WP_003811164.1|1657408_1658821_+	type I glutamate--ammonia ligase	NA	NA	NA	NA	NA
WP_003811167.1|1658884_1659952_+	PAS domain-containing protein	NA	Q8QKV7	Ectocarpus_siliculosus_virus	23.5	1.1e-05
WP_010930451.1|1659951_1661439_+	nitrogen regulation protein NR(I)	NA	NA	NA	NA	NA
WP_010930452.1|1661448_1662393_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811176.1|1662552_1663251_+	pirin family protein	NA	NA	NA	NA	NA
WP_010930453.1|1663328_1664234_+	pirin family protein	NA	NA	NA	NA	NA
WP_005012067.1|1664253_1665204_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 16
NZ_CP010259	Bordetella pertussis strain I518 chromosome, complete genome	4105350	1701153	1756744	4105350	transposase	Brazilian_cedratvirus(25.0%)	47	NA	NA
WP_005013747.1|1701153_1702104_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930486.1|1702162_1702936_+	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_014486074.1|1702928_1704485_+	LTA synthase family protein	NA	NA	NA	NA	NA
WP_005013747.1|1704481_1705432_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003810741.1|1706758_1707361_-	TetR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003810743.1|1707600_1708302_-	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
WP_003816696.1|1708295_1709078_-	ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	25.8	2.0e-09
WP_005012808.1|1709262_1710213_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930483.1|1710311_1711049_-	TerC family protein	NA	A0A0S4KZH7	Pseudomonas_phage	46.6	4.1e-41
WP_010926609.1|1711238_1711997_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930482.1|1712043_1713033_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930481.1|1713210_1714179_-	transporter	NA	NA	NA	NA	NA
WP_010930480.1|1715718_1716687_+	AAA family ATPase	NA	NA	NA	NA	NA
WP_010930479.1|1716695_1717637_+	DUF58 domain-containing protein	NA	NA	NA	NA	NA
WP_010930478.1|1718110_1719121_+	VWA domain-containing protein	NA	NA	NA	NA	NA
WP_010930477.1|1719111_1720626_+	VWA domain-containing protein	NA	NA	NA	NA	NA
WP_010930476.1|1720622_1721969_+	BatD family protein	NA	NA	NA	NA	NA
WP_010930475.1|1721971_1723006_+	haloacid dehalogenase-like hydrolase	NA	NA	NA	NA	NA
WP_023852967.1|1723055_1724681_+	arylsulfatase	NA	A0A2P0VMN7	Tetraselmis_virus	52.2	2.0e-149
WP_005012067.1|1725233_1726184_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930487.1|1726288_1727236_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247865.1|1727289_1729104_-	sensor histidine kinase	NA	NA	NA	NA	NA
WP_010930489.1|1729096_1729771_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_023995112.1|1729900_1732975_+	autotransporter SphB2	NA	NA	NA	NA	NA
WP_019247905.1|1732988_1733288_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010930492.1|1733602_1734226_-	glutathione S-transferase family protein	NA	NA	NA	NA	NA
WP_010930493.1|1734469_1735339_+	TauD/TfdA family dioxygenase	NA	NA	NA	NA	NA
WP_010930494.1|1735316_1736261_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247909.1|1736346_1737273_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019247910.1|1737385_1738165_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930497.1|1738155_1739352_-	alpha-hydroxy-acid oxidizing protein	NA	NA	NA	NA	NA
WP_010930498.1|1739382_1740333_-	fumarylacetoacetate hydrolase family protein	NA	NA	NA	NA	NA
WP_010930499.1|1740554_1741244_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930500.1|1741308_1742064_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930501.1|1742115_1743108_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930502.1|1743117_1744071_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811538.1|1744186_1745149_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019249376.1|1746550_1746979_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931070.1|1746975_1747926_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_170954298.1|1748219_1748957_-	arsenical resistance protein ArsH	NA	A0A2H4J5V6	uncultured_Caudovirales_phage	68.2	1.3e-87
WP_010930504.1|1749380_1750568_-	MFS transporter	NA	NA	NA	NA	NA
WP_019249653.1|1750571_1750952_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010930506.1|1752671_1753643_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930507.1|1753656_1754370_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930508.1|1754374_1755292_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811452.1|1755398_1755695_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929588.1|1755793_1756744_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 17
NZ_CP010259	Bordetella pertussis strain I518 chromosome, complete genome	4105350	1989508	2059160	4105350	transposase,tRNA	Staphylococcus_phage(16.67%)	55	NA	NA
WP_003818515.1|1989508_1992166_-|tRNA	leucine--tRNA ligase	tRNA	A0A2H4PQS0	Staphylococcus_phage	39.0	3.3e-173
WP_010930709.1|1992243_1993446_-	MFS transporter	NA	NA	NA	NA	NA
WP_003810260.1|1993442_1993955_-	MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247822.1|1994077_1994515_-	HU family DNA-binding protein	NA	NA	NA	NA	NA
WP_010931070.1|1994791_1995742_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_062826579.1|1995840_1996791_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930710.1|1997044_1998850_+	STAS domain-containing protein	NA	A0A2H4J153	uncultured_Caudovirales_phage	27.5	2.2e-19
WP_010930711.1|1998963_1999131_-	50S ribosomal protein L33	NA	NA	NA	NA	NA
WP_003810297.1|1999194_1999431_-	50S ribosomal protein L28	NA	NA	NA	NA	NA
WP_010930712.1|1999799_2000999_-	multidrug effflux MFS transporter	NA	NA	NA	NA	NA
WP_010929591.1|2002514_2003465_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003818523.1|2003916_2004918_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003810306.1|2005090_2005948_+	proline/glycine betaine ABC transporter permease	NA	NA	NA	NA	NA
WP_003810308.1|2005944_2007207_+	glycine betaine/L-proline ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	36.6	6.8e-28
WP_003818524.1|2007307_2007682_+	tautomerase family protein	NA	NA	NA	NA	NA
WP_010930713.1|2007754_2008942_+	acetyl-CoA C-acyltransferase family protein	NA	NA	NA	NA	NA
WP_010930714.1|2009026_2009797_+	spermidine synthase	NA	NA	NA	NA	NA
WP_010930715.1|2009910_2010675_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930716.1|2010625_2011927_+	malonyl-CoA decarboxylase family protein	NA	NA	NA	NA	NA
WP_010930717.1|2011923_2012730_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003818532.1|2014474_2015446_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003818533.1|2015602_2016115_+	superoxide dismutase family protein	NA	Q9MC02	Salmonella_phage	52.3	1.8e-43
WP_010930718.1|2016273_2017248_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930719.1|2018248_2019043_+	ABC transporter ATP-binding protein	NA	A0A1V0SE00	Indivirus	25.7	5.1e-05
WP_003818535.1|2019068_2019875_-	TOBE domain-containing protein	NA	NA	NA	NA	NA
WP_003810329.1|2019985_2020576_+	DUF4136 domain-containing protein	NA	NA	NA	NA	NA
WP_010930720.1|2020586_2021765_+	patatin-like phospholipase family protein	NA	NA	NA	NA	NA
WP_010930721.1|2021867_2022242_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_019248531.1|2022494_2023826_+	efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
WP_019247651.1|2023892_2027123_+	multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_003810344.1|2028613_2029360_+	pyridoxine 5'-phosphate synthase	NA	NA	NA	NA	NA
WP_010930724.1|2029444_2029906_+	holo-ACP synthase	NA	NA	NA	NA	NA
WP_010930725.1|2029943_2031002_+	beta-N-acetylhexosaminidase	NA	NA	NA	NA	NA
WP_010930726.1|2030964_2032794_+	excinuclease ABC subunit UvrC	NA	NA	NA	NA	NA
WP_003810356.1|2032833_2033406_+	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	NA	NA	NA	NA	NA
WP_010930727.1|2034830_2035652_-	NADPH-dependent 7-cyano-7-deazaguanine reductase QueF	NA	A0A2I7SAX1	Vibrio_phage	37.6	4.1e-42
WP_010930728.1|2035970_2037293_+	isocitrate lyase	NA	NA	NA	NA	NA
WP_010930729.1|2037652_2038288_+	membrane protein	NA	NA	NA	NA	NA
WP_010930730.1|2038247_2039198_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930731.1|2040068_2040941_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010930732.1|2041018_2042158_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930733.1|2042516_2043773_+	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA	NA
WP_003816691.1|2043778_2044306_+	aromatic-ring-hydroxylating dioxygenase subunit beta	NA	NA	NA	NA	NA
WP_003816690.1|2044310_2045129_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003816687.1|2045128_2045851_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930735.1|2045872_2046187_+	2Fe-2S iron-sulfur cluster binding domain-containing protein	NA	NA	NA	NA	NA
WP_010930736.1|2046204_2047353_+	CoA transferase	NA	NA	NA	NA	NA
WP_010930737.1|2047383_2048259_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003816680.1|2048255_2049575_-	AMP-binding protein	NA	NA	NA	NA	NA
WP_014486081.1|2049647_2050844_-	acetyl-CoA acetyltransferase	NA	NA	NA	NA	NA
WP_010930739.1|2050854_2052342_-	hydroxymethylglutaryl-CoA synthase family protein	NA	NA	NA	NA	NA
WP_010930740.1|2054936_2055836_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_023852887.1|2055973_2056939_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_005015810.1|2057037_2057988_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|2058209_2059160_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 18
NZ_CP010259	Bordetella pertussis strain I518 chromosome, complete genome	4105350	2070656	2120052	4105350	transposase	Erysipelothrix_phage(16.67%)	45	NA	NA
WP_005013747.1|2070656_2071607_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812172.1|2072744_2073041_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247707.1|2073215_2074568_+	glutathione-disulfide reductase	NA	A0A2K5B2C5	Erysipelothrix_phage	27.6	2.9e-45
WP_010930153.1|2074710_2075727_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010930748.1|2077706_2078720_-	pyridoxamine 5'-phosphate oxidase family protein	NA	NA	NA	NA	NA
WP_010930749.1|2078806_2079712_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003812179.1|2079868_2080213_+	exported protein	NA	NA	NA	NA	NA
WP_010930750.1|2080370_2080829_+	(2Fe-2S)-binding protein	NA	NA	NA	NA	NA
WP_010930751.1|2080842_2083059_+	xanthine dehydrogenase family protein molybdopterin-binding subunit	NA	NA	NA	NA	NA
WP_003812183.1|2083055_2084117_+	XdhC family protein	NA	NA	NA	NA	NA
WP_010930752.1|2084145_2085120_+	AraC family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930753.1|2085071_2085890_-	hypothetical protein	NA	A0A1B1INV8	uncultured_Mediterranean_phage	28.8	2.3e-16
WP_003812191.1|2085902_2086511_-	LON peptidase substrate-binding domain-containing protein	NA	NA	NA	NA	NA
WP_010930754.1|2086685_2087081_+	VOC family protein	NA	NA	NA	NA	NA
WP_010930755.1|2087099_2088539_+	MFS transporter	NA	A0A0M3UL24	Mycobacterium_phage	37.4	7.4e-55
WP_003812199.1|2088567_2088915_+	GFA family protein	NA	NA	NA	NA	NA
WP_010929577.1|2088933_2089884_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|2090536_2091487_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023997035.1|2091570_2093388_+	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	27.4	2.3e-37
WP_019247659.1|2093461_2094109_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930758.1|2094121_2095051_-	ZIP family metal transporter	NA	NA	NA	NA	NA
WP_014905663.1|2095220_2095685_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003816977.1|2095932_2096613_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003816975.1|2096661_2098353_+	STAS domain-containing protein	NA	A0A2H4J153	uncultured_Caudovirales_phage	27.3	5.0e-42
WP_010930760.1|2098368_2098920_-	SRPBCC family protein	NA	NA	NA	NA	NA
WP_003816971.1|2098916_2099288_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010930761.1|2099400_2100237_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_029443822.1|2100247_2100772_-	DUF302 domain-containing protein	NA	NA	NA	NA	NA
WP_003812228.1|2100869_2101049_+	DUF3008 family protein	NA	NA	NA	NA	NA
WP_010930763.1|2101178_2102153_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003816964.1|2102283_2102640_+	DUF1428 domain-containing protein	NA	NA	NA	NA	NA
WP_010930764.1|2102629_2103505_-	PhzF family phenazine biosynthesis protein	NA	NA	NA	NA	NA
WP_010930765.1|2103603_2104488_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930766.1|2104509_2105805_-	DUF445 domain-containing protein	NA	NA	NA	NA	NA
WP_003816959.1|2106753_2107404_+	NAD(P)H-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010930767.1|2107491_2109012_-	aldehyde dehydrogenase	NA	NA	NA	NA	NA
WP_010930768.1|2109269_2111135_+	sigma-54-dependent Fis family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|2112180_2113131_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_162268681.1|2113148_2113289_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930769.1|2114103_2114463_-	CidA/LrgA family protein	NA	NA	NA	NA	NA
WP_010930770.1|2114450_2115887_-	dethiobiotin synthase	NA	NA	NA	NA	NA
WP_010930771.1|2115883_2116537_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_010930772.1|2116533_2117727_-	8-amino-7-oxononanoate synthase	NA	NA	NA	NA	NA
WP_010930773.1|2117830_2119105_+	adenosylmethionine--8-amino-7-oxononanoate transaminase	NA	A0A1V0SKB7	Klosneuvirus	28.9	9.6e-14
WP_005012067.1|2119101_2120052_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 19
NZ_CP010259	Bordetella pertussis strain I518 chromosome, complete genome	4105350	2131256	2199632	4105350	protease,transposase,tRNA	Klosneuvirus(22.22%)	58	NA	NA
WP_005013747.1|2131256_2132207_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_047122784.1|2132166_2132580_-	transcriptional regulator	NA	A0A222YXG1	Escherichia_phage	59.0	3.8e-36
WP_003816708.1|2132864_2133164_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930783.1|2133573_2135856_-	RNA polymerase sigma factor RpoD	NA	A0A2I7SAT0	Vibrio_phage	30.1	3.2e-36
WP_010930784.1|2136541_2138572_-	DNA primase	NA	A0A0K1LMQ9	Caulobacter_phage	41.9	1.0e-65
WP_006218592.1|2138591_2138804_-	30S ribosomal protein S21	NA	NA	NA	NA	NA
WP_003810720.1|2139081_2139621_-	phosphoribosyltransferase	NA	NA	NA	NA	NA
WP_023852902.1|2139734_2141030_-	adenylosuccinate synthase	NA	A0A160ER07	Powai_lake_megavirus	33.5	3.0e-63
WP_010930786.1|2141106_2142264_-	ATP phosphoribosyltransferase regulatory subunit	NA	NA	NA	NA	NA
WP_010930787.1|2142447_2143347_-|protease	protease modulator HflC	protease	NA	NA	NA	NA
WP_010930788.1|2143365_2144670_-|protease	FtsH protease activity modulator HflK	protease	NA	NA	NA	NA
WP_010930789.1|2144635_2145742_-	GTPase HflX	NA	NA	NA	NA	NA
WP_003810707.1|2145829_2146066_-	RNA chaperone Hfq	NA	NA	NA	NA	NA
WP_010930790.1|2146204_2147275_-	histidinol-phosphate transaminase	NA	A0A1X6WGT4	Pacmanvirus	25.7	2.5e-15
WP_003810703.1|2147278_2148634_-	ribosome biogenesis GTPase Der	NA	NA	NA	NA	NA
WP_003810701.1|2148660_2149821_-	outer membrane protein assembly factor BamB	NA	NA	NA	NA	NA
WP_010930791.1|2149823_2150462_-	tetratricopeptide repeat protein	NA	NA	NA	NA	NA
WP_023995843.1|2150463_2151750_-|tRNA	histidine--tRNA ligase	tRNA	NA	NA	NA	NA
WP_010930793.1|2151808_2153104_-	flavodoxin-dependent (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase	NA	NA	NA	NA	NA
WP_003810693.1|2153110_2153617_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_004568542.1|2153613_2154762_-	23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN	NA	NA	NA	NA	NA
WP_003810689.1|2154789_2155215_-	nucleoside-diphosphate kinase	NA	D2E8E1	Anguillid_herpesvirus	43.2	2.1e-21
WP_010930794.1|2155537_2158420_+|tRNA	valine--tRNA ligase	tRNA	A0A1V0SK04	Klosneuvirus	37.1	3.7e-138
WP_023852900.1|2158512_2159268_-	MipA/OmpV family protein	NA	NA	NA	NA	NA
WP_010930796.1|2160033_2161383_+	two-component sensor histidine kinase	NA	NA	NA	NA	NA
WP_076879566.1|2161481_2162432_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930048.1|2162530_2163481_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930594.1|2163554_2164028_+	RidA family protein	NA	NA	NA	NA	NA
WP_010930593.1|2164053_2165262_+	aminotransferase class V-fold PLP-dependent enzyme	NA	NA	NA	NA	NA
WP_003816734.1|2165258_2166032_-|tRNA	tRNA (guanosine(37)-N1)-methyltransferase TrmD	tRNA	NA	NA	NA	NA
WP_014905757.1|2166031_2166655_-	ribosome maturation factor RimM	NA	NA	NA	NA	NA
WP_010926757.1|2166820_2167081_-	30S ribosomal protein S16	NA	NA	NA	NA	NA
WP_010930591.1|2167384_2167966_+	hypothetical protein	NA	NA	NA	NA	NA
WP_004568544.1|2168032_2168287_-	sulfurtransferase TusA family protein	NA	NA	NA	NA	NA
WP_010930590.1|2168273_2170898_-|tRNA	alanine--tRNA ligase	tRNA	A0A1V0SK38	Klosneuvirus	39.4	1.7e-81
WP_010930589.1|2170969_2171788_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003810661.1|2171784_2172390_-	prepilin-type N-terminal cleavage/methylation domain-containing protein	NA	NA	NA	NA	NA
WP_010930588.1|2172427_2173561_-	general secretion pathway protein	NA	NA	NA	NA	NA
WP_010930587.1|2175276_2175651_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930586.1|2175748_2177023_-	type 4b pilus protein PilO2	NA	NA	NA	NA	NA
WP_010930585.1|2177026_2178604_-	lipoprotein	NA	NA	NA	NA	NA
WP_010930584.1|2179510_2180866_-	amidase	NA	NA	NA	NA	NA
WP_010930583.1|2180862_2182497_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	32.7	8.2e-18
WP_010930582.1|2182489_2183320_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_003810637.1|2183337_2184282_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010930581.1|2184334_2185909_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019247553.1|2185956_2186316_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247554.1|2186308_2186629_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247555.1|2186744_2187677_+	acyclic terpene utilization AtuA family protein	NA	NA	NA	NA	NA
WP_003818676.1|2187779_2188736_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003810623.1|2188885_2190223_-	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_010930578.1|2190227_2191484_-	D-amino acid dehydrogenase	NA	NA	NA	NA	NA
WP_010930577.1|2191679_2192726_-	CDP-6-deoxy-delta-3,4-glucoseen reductase	NA	NA	NA	NA	NA
WP_003818672.1|2192783_2193152_-	aspartate 1-decarboxylase	NA	NA	NA	NA	NA
WP_010930576.1|2193282_2194155_-	MOSC N-terminal beta barrel domain-containing protein	NA	NA	NA	NA	NA
WP_003818670.1|2194231_2195134_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930574.1|2196190_2197408_-	four-carbon acid sugar kinase family protein	NA	NA	NA	NA	NA
WP_010929577.1|2198681_2199632_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 20
NZ_CP010259	Bordetella pertussis strain I518 chromosome, complete genome	4105350	2214910	2279731	4105350	protease,transposase,tRNA	Lake_Baikal_phage(18.18%)	54	NA	NA
WP_005012067.1|2214910_2215861_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247934.1|2216431_2216644_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247935.1|2216661_2217393_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003812478.1|2217427_2218069_-	CoA transferase subunit B	NA	NA	NA	NA	NA
WP_010930565.1|2218061_2218730_-	3-oxoacid CoA-transferase subunit A	NA	NA	NA	NA	NA
WP_010930564.1|2220942_2221719_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930563.1|2221740_2222898_-	thiolase	NA	NA	NA	NA	NA
WP_003812491.1|2222894_2223326_-	OB-fold domain-containing protein	NA	NA	NA	NA	NA
WP_015063637.1|2223322_2224126_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010930561.1|2224139_2224541_-	MaoC family dehydratase	NA	NA	NA	NA	NA
WP_010930560.1|2224607_2225579_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930559.1|2225644_2226868_-	CoA transferase	NA	NA	NA	NA	NA
WP_019247936.1|2227095_2228046_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930557.1|2228169_2230623_-	endopeptidase La	NA	A0A0R6PGP8	Moraxella_phage	52.0	1.5e-220
WP_010930556.1|2230811_2232116_-|protease	ATP-dependent Clp protease ATP-binding subunit ClpX	protease	G3M9Z9	Bacillus_virus	53.8	3.2e-129
WP_003812508.1|2232220_2232874_-	ATP-dependent Clp endopeptidase proteolytic subunit ClpP	NA	A0A223W000	Agrobacterium_phage	57.5	6.8e-56
WP_010930555.1|2232876_2234187_-	trigger factor	NA	NA	NA	NA	NA
WP_010930554.1|2234383_2234944_+	TIGR00645 family protein	NA	K4K6D8	Caulobacter_phage	33.7	1.0e-23
WP_010930553.1|2235055_2235256_-	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	64.4	7.4e-14
WP_003812519.1|2235601_2236168_-	DUF924 family protein	NA	NA	NA	NA	NA
WP_010930551.1|2236251_2236455_-	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	62.1	1.6e-16
WP_003812524.1|2236761_2237082_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003812526.1|2237123_2237405_-	membrane protein	NA	NA	NA	NA	NA
WP_010930550.1|2237479_2238736_-	autotransporter Phg	NA	NA	NA	NA	NA
WP_010930549.1|2239118_2239448_+	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
WP_003812536.1|2241018_2241840_+	2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase	NA	NA	NA	NA	NA
WP_010930548.1|2241839_2242979_+	succinyl-diaminopimelate desuccinylase	NA	NA	NA	NA	NA
WP_019247938.1|2242985_2243882_+	50S ribosomal protein L3 N(5)-glutamine methyltransferase	NA	NA	NA	NA	NA
WP_010930546.1|2243878_2245804_+	ATP-binding cassette domain-containing protein	NA	A0A2K9L0W2	Tupanvirus	31.8	1.1e-66
WP_010926400.1|2246163_2248776_+	TonB-dependent receptor	NA	NA	NA	NA	NA
WP_003812546.1|2248828_2251129_-	UvrD-helicase domain-containing protein	NA	A7KV33	Bacillus_phage	35.9	9.9e-110
WP_003812548.1|2251125_2252334_-	fatty acid desaturase	NA	NA	NA	NA	NA
WP_010930545.1|2252595_2252970_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|2252966_2253917_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_076879626.1|2254015_2256010_-	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	33.3	4.4e-21
WP_010930543.1|2256069_2257035_+	bifunctional riboflavin kinase/FAD synthetase	NA	NA	NA	NA	NA
WP_010930542.1|2257024_2259886_+|tRNA	isoleucine--tRNA ligase	tRNA	A0A1V0SJ93	Klosneuvirus	25.5	1.0e-71
WP_010930541.1|2259888_2260395_+	lipoprotein signal peptidase	NA	NA	NA	NA	NA
WP_010930540.1|2260499_2261708_+	bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC	NA	Q9HH70	Methanothermobacter_phage	30.0	3.8e-36
WP_033446178.1|2261709_2262648_-	membrane protein	NA	NA	NA	NA	NA
WP_010930538.1|2262809_2263283_+	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012808.1|2263279_2264230_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_004566334.1|2264340_2264781_-	DUF937 domain-containing protein	NA	NA	NA	NA	NA
WP_010930537.1|2264909_2266139_-	lytic murein transglycosylase	NA	NA	NA	NA	NA
WP_004566336.1|2266177_2266999_-	ferritin-like domain-containing protein	NA	NA	NA	NA	NA
WP_029443743.1|2267052_2268204_+	N-acetyltransferase	NA	NA	NA	NA	NA
WP_010930535.1|2268295_2268784_-	DUF1854 domain-containing protein	NA	NA	NA	NA	NA
WP_019247811.1|2271334_2273884_+	cyanophycin synthetase	NA	NA	NA	NA	NA
WP_010930533.1|2273954_2276528_+	cyanophycin synthetase	NA	NA	NA	NA	NA
WP_003813568.1|2276793_2276994_+	CsbD family protein	NA	NA	NA	NA	NA
WP_003813570.1|2277025_2277187_+	DUF1328 domain-containing protein	NA	NA	NA	NA	NA
WP_003813572.1|2277244_2277583_+	BON domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|2277731_2278682_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|2278780_2279731_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 21
NZ_CP010259	Bordetella pertussis strain I518 chromosome, complete genome	4105350	2350407	2413985	4105350	protease,transposase	uncultured_Caudovirales_phage(11.11%)	49	NA	NA
WP_010931070.1|2350407_2351358_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003809615.1|2351659_2352136_-	transcription elongation factor GreA	NA	NA	NA	NA	NA
WP_019247142.1|2352759_2354397_+	Tar ligand binding domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	30.2	8.8e-12
WP_003809610.1|2354427_2355741_-	pyrimidine permease	NA	Q9KX94	Enterobacteria_phage	67.1	2.1e-149
WP_004568205.1|2355874_2356192_+	hypothetical protein	NA	NA	NA	NA	NA
WP_023852827.1|2356292_2357615_+	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_010929591.1|2357611_2358562_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|2358660_2359611_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930836.1|2360140_2361163_-	putative 2-aminoethylphosphonate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003820286.1|2361191_2362022_-	phosphonoacetaldehyde hydrolase	NA	NA	NA	NA	NA
WP_029443740.1|2362038_2363736_-	putative 2-aminoethylphosphonate ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_010930838.1|2363800_2364877_-	putative 2-aminoethylphosphonate ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	35.8	1.2e-28
WP_010930839.1|2365036_2365900_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930840.1|2365930_2366500_+	HD domain-containing protein	NA	NA	NA	NA	NA
WP_010930841.1|2366516_2367368_-	sulfurtransferase	NA	NA	NA	NA	NA
WP_003813142.1|2368425_2369307_+|protease	protease HtpX	protease	NA	NA	NA	NA
WP_010930842.1|2369381_2370371_-	quinone oxidoreductase	NA	NA	NA	NA	NA
WP_010930843.1|2370433_2371384_-	DMT family transporter	NA	NA	NA	NA	NA
WP_003813147.1|2371446_2372304_+	DMT family transporter	NA	NA	NA	NA	NA
WP_003813149.1|2372363_2372852_+	MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930844.1|2374424_2375615_+	efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
WP_010930845.1|2375611_2377198_+	DHA2 family efflux MFS transporter permease subunit	NA	NA	NA	NA	NA
WP_010930846.1|2377216_2378284_-	tartrate dehydrogenase	NA	NA	NA	NA	NA
WP_010930847.1|2378388_2379933_-	PLP-dependent aminotransferase family protein	NA	A0A1X9I5H2	Streptococcus_phage	25.4	3.1e-14
WP_010930848.1|2380352_2381927_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930849.1|2382034_2383051_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_003813165.1|2383047_2383887_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010930850.1|2383891_2385529_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.6	3.6e-21
WP_005013747.1|2385525_2386476_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_162268683.1|2386493_2386637_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930851.1|2386618_2387893_+	4-aminobutyrate--2-oxoglutarate transaminase	NA	A0A1V0SKB7	Klosneuvirus	27.9	1.6e-24
WP_010930852.1|2387922_2388213_+	cupin domain-containing protein	NA	NA	NA	NA	NA
WP_047122810.1|2388285_2389299_+	histone deacetylase family protein	NA	A0A2K9L4C2	Tupanvirus	35.2	1.7e-42
WP_010930854.1|2389318_2390581_+	Zn-dependent hydrolase	NA	NA	NA	NA	NA
WP_010930855.1|2390583_2391507_+	DMT family transporter	NA	NA	NA	NA	NA
WP_010930856.1|2391503_2392997_+	aldehyde dehydrogenase	NA	NA	NA	NA	NA
WP_010930857.1|2393007_2393940_-	glyoxylate/hydroxypyruvate reductase A	NA	NA	NA	NA	NA
WP_076879554.1|2394121_2395447_+	aspartate aminotransferase family protein	NA	A0A1C9EHH3	Mycobacterium_phage	22.5	1.8e-07
WP_023853659.1|2395481_2396825_-	sodium:alanine symporter family protein	NA	NA	NA	NA	NA
WP_023853666.1|2396897_2398418_-	DUF853 domain-containing protein	NA	A0A248XCZ8	Klebsiella_phage	44.9	1.7e-78
WP_010930861.1|2398572_2399304_+	YebC/PmpR family DNA-binding transcriptional regulator	NA	NA	NA	NA	NA
WP_010930862.1|2399371_2400712_+	phosphoribosylamine--glycine ligase	NA	NA	NA	NA	NA
WP_010930863.1|2400727_2401639_+	oxygen-dependent coproporphyrinogen oxidase	NA	NA	NA	NA	NA
WP_010930864.1|2401629_2402223_+	nicotinate (nicotinamide) nucleotide adenylyltransferase	NA	NA	NA	NA	NA
WP_003813196.1|2402284_2402671_+	ribosome silencing factor	NA	NA	NA	NA	NA
WP_003813199.1|2402682_2403153_+	23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH	NA	NA	NA	NA	NA
WP_010930865.1|2403164_2403788_+	septum formation inhibitor Maf	NA	NA	NA	NA	NA
WP_010930866.1|2403808_2406556_-	autotransporter Vag8	NA	NA	NA	NA	NA
WP_005012808.1|2413034_2413985_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 22
NZ_CP010259	Bordetella pertussis strain I518 chromosome, complete genome	4105350	2685971	2726639	4105350	transposase,tRNA	Salmonella_phage(33.33%)	43	NA	NA
WP_010929591.1|2685971_2686922_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_004567479.1|2687032_2687215_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931004.1|2687314_2687911_-	lipoprotein	NA	NA	NA	NA	NA
WP_010931005.1|2688094_2689186_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003812822.1|2689685_2690096_-	MerR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931006.1|2690154_2690496_-	integration host factor subunit alpha	NA	A0A0H3UZA0	Geobacillus_virus	42.2	2.8e-13
WP_010931007.1|2690501_2692919_-|tRNA	phenylalanine--tRNA ligase subunit beta	tRNA	NA	NA	NA	NA
WP_010926359.1|2692931_2693954_-|tRNA	phenylalanine--tRNA ligase subunit alpha	tRNA	A0A2H4UW22	Bodo_saltans_virus	38.6	1.0e-26
WP_003812832.1|2694028_2694388_-	50S ribosomal protein L20	NA	NA	NA	NA	NA
WP_003812834.1|2694403_2694601_-	50S ribosomal protein L35	NA	NA	NA	NA	NA
WP_010929584.1|2694936_2695887_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003816756.1|2696081_2696531_+	dUTP diphosphatase	NA	S4TNT3	Salmonella_phage	67.2	3.7e-45
WP_005012808.1|2696527_2697478_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931008.1|2697588_2699037_+	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
WP_010931009.1|2699151_2699433_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|2699536_2700487_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003820420.1|2700731_2701445_-	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_019247724.1|2701567_2701795_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_003816758.1|2702089_2702728_-	DedA family protein	NA	NA	NA	NA	NA
WP_010931011.1|2702836_2703871_+	metal-dependent hydrolase	NA	NA	NA	NA	NA
WP_010929591.1|2703867_2704818_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931012.1|2705233_2705758_-	DNA-binding protein	NA	J9Q7G7	Salmonella_phage	32.9	6.5e-09
WP_004567322.1|2705761_2706031_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931013.1|2706229_2707291_-	LacI family DNA-binding transcriptional regulator	NA	NA	NA	NA	NA
WP_010931014.1|2707374_2709009_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	31.1	2.9e-15
WP_010931015.1|2709010_2709814_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931016.1|2709842_2710802_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931017.1|2710805_2712320_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019248147.1|2712356_2713361_-	M20/M25/M40 family metallo-hydrolase	NA	NA	NA	NA	NA
WP_019248146.1|2713368_2713617_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931018.1|2713791_2714262_-	DUF1801 domain-containing protein	NA	NA	NA	NA	NA
WP_010931019.1|2714297_2714909_-	LysE family translocator	NA	NA	NA	NA	NA
WP_010931020.1|2714939_2715563_-	FMN-binding negative transcriptional regulator	NA	NA	NA	NA	NA
WP_010931021.1|2715643_2717176_+	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
WP_010931022.1|2717210_2718452_-	MFS transporter	NA	NA	NA	NA	NA
WP_010931023.1|2718495_2719527_-	alcohol dehydrogenase catalytic domain-containing protein	NA	A0A2K9L339	Tupanvirus	27.8	1.8e-26
WP_010931024.1|2719523_2720693_-	FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010931025.1|2720686_2721367_-	cupin domain-containing protein	NA	NA	NA	NA	NA
WP_010931026.1|2721528_2722371_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931027.1|2722533_2723505_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010931028.1|2723676_2724555_+	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
WP_010931029.1|2724577_2725648_-	FUSC family protein	NA	NA	NA	NA	NA
WP_005013747.1|2725688_2726639_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 23
NZ_CP010259	Bordetella pertussis strain I518 chromosome, complete genome	4105350	2782104	2854974	4105350	transposase,tRNA	Moraxella_phage(16.67%)	58	NA	NA
WP_003810909.1|2782104_2782521_-|tRNA	aminoacyl-tRNA hydrolase	tRNA	NA	NA	NA	NA
WP_010931061.1|2782631_2783264_+	7-carboxy-7-deazaguanine synthase	NA	NA	NA	NA	NA
WP_010931062.1|2783292_2783736_+	6-carboxytetrahydropterin synthase QueD	NA	NA	NA	NA	NA
WP_003810897.1|2783757_2784849_-	TRAP transporter substrate-binding protein DctP	NA	NA	NA	NA	NA
WP_010931063.1|2784903_2785704_-	aldolase	NA	NA	NA	NA	NA
WP_010931064.1|2785839_2786460_+	cupin domain-containing protein	NA	NA	NA	NA	NA
WP_010931065.1|2786599_2787073_+	MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|2788212_2789163_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931066.1|2789159_2796821_-	hemagglutinin repeat-containing protein	NA	A0A0R6PJK4	Moraxella_phage	30.9	7.3e-24
WP_010931067.1|2797061_2801108_-	phosphoribosylformylglycinamidine synthase	NA	A9YX36	Burkholderia_phage	67.4	6.3e-160
WP_003816847.1|2801420_2802002_+	TRAP transporter small permease	NA	NA	NA	NA	NA
WP_010931068.1|2801998_2803297_+	TRAP transporter large permease	NA	NA	NA	NA	NA
WP_010931069.1|2803376_2804405_+	DctP family TRAP transporter solute-binding subunit	NA	NA	NA	NA	NA
WP_010931070.1|2804665_2805616_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010927663.1|2805612_2806563_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931071.1|2806879_2807485_+	fimbrial major subunit FimX	NA	NA	NA	NA	NA
WP_010931072.1|2807538_2808852_-	phenylacetate--CoA ligase	NA	NA	NA	NA	NA
WP_003813284.1|2808926_2809397_-	hydroxyphenylacetyl-CoA thioesterase PaaI	NA	NA	NA	NA	NA
WP_010931073.1|2809396_2810185_-	2-(1,2-epoxy-1,2-dihydrophenyl)acetyl-CoA isomerase	NA	NA	NA	NA	NA
WP_010931074.1|2810195_2811848_-	phenylacetic acid degradation protein PaaN	NA	NA	NA	NA	NA
WP_010929591.1|2811935_2812886_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931075.1|2814047_2814554_-	phenylacetate-CoA oxygenase subunit PaaJ	NA	NA	NA	NA	NA
WP_003813293.1|2814550_2815315_-	phenylacetate-CoA oxygenase subunit PaaC	NA	NA	NA	NA	NA
WP_010931076.1|2815330_2815615_-	1,2-phenylacetyl-CoA epoxidase subunit B	NA	NA	NA	NA	NA
WP_003813298.1|2815679_2816669_-	1,2-phenylacetyl-CoA epoxidase subunit A	NA	NA	NA	NA	NA
WP_010931077.1|2816840_2817770_+	phenylacetic acid degradation operon negative regulatory protein PaaX	NA	NA	NA	NA	NA
WP_003813302.1|2817741_2818428_-	NAD(P)H-hydrate epimerase	NA	NA	NA	NA	NA
WP_003813303.1|2818461_2819007_-	oligoribonuclease	NA	Q8B5Y0	Diachasmimorpha_longicaudata_entomopoxvirus	37.7	2.1e-26
WP_003813306.1|2819051_2820317_+	M48 family metallopeptidase	NA	NA	NA	NA	NA
WP_003813309.1|2820313_2821216_+	ribosome small subunit-dependent GTPase A	NA	NA	NA	NA	NA
WP_019247679.1|2822397_2823342_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931079.1|2823436_2824954_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931080.1|2824995_2826624_-	gamma-glutamyltransferase	NA	NA	NA	NA	NA
WP_003811986.1|2826731_2827613_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931081.1|2830725_2831100_+	endonuclease	NA	F4YXR7	Roseobacter_phage	54.4	2.1e-25
WP_003812004.1|2831124_2831463_-	P-II family nitrogen regulator	NA	NA	NA	NA	NA
WP_010931082.1|2831506_2833141_-	NAD+ synthase	NA	A0A2L0UZF5	Agrobacterium_phage	36.6	8.3e-87
WP_010931083.1|2833179_2834526_-	mechanosensitive ion channel family protein	NA	NA	NA	NA	NA
WP_003812010.1|2834633_2836055_+	argininosuccinate lyase	NA	NA	NA	NA	NA
WP_010931084.1|2836124_2836709_-	nitroreductase	NA	NA	NA	NA	NA
WP_005012067.1|2836811_2837762_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931085.1|2837896_2839003_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010931086.1|2839013_2840111_+	GTP 3',8-cyclase MoaA	NA	NA	NA	NA	NA
WP_010931087.1|2840255_2841461_-	molybdopterin molybdotransferase MoeA	NA	NA	NA	NA	NA
WP_010931088.1|2841467_2841989_-	molybdenum cofactor biosynthesis protein B	NA	NA	NA	NA	NA
WP_010931089.1|2841985_2842477_-	molybdenum cofactor biosynthesis protein MoaE	NA	NA	NA	NA	NA
WP_003819740.1|2842473_2842725_-	MoaD/ThiS family protein	NA	NA	NA	NA	NA
WP_003819741.1|2842705_2843191_-	cyclic pyranopterin monophosphate synthase MoaC	NA	NA	NA	NA	NA
WP_010931090.1|2843326_2846788_+	DUF748 domain-containing protein	NA	NA	NA	NA	NA
WP_010931091.1|2846805_2847690_+	dienelactone hydrolase family protein	NA	NA	NA	NA	NA
WP_010931092.1|2847699_2848131_-	lipoprotein	NA	NA	NA	NA	NA
WP_003809348.1|2848377_2848881_+	peroxiredoxin	NA	M1I839	Pelagibacter_phage	44.1	1.8e-24
WP_010931094.1|2848958_2850359_+	MFS transporter	NA	NA	NA	NA	NA
WP_010931095.1|2850433_2851309_-	membrane protein	NA	NA	NA	NA	NA
WP_023853546.1|2851305_2852313_-	biotin synthase BioB	NA	NA	NA	NA	NA
WP_010931097.1|2852780_2853086_+	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
WP_003819753.1|2853176_2853767_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930525.1|2853957_2854974_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
>prophage 24
NZ_CP010259	Bordetella pertussis strain I518 chromosome, complete genome	4105350	2858117	2924928	4105350	protease,transposase	uncultured_Mediterranean_phage(28.57%)	50	NA	NA
WP_023995489.1|2858117_2859068_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|2859166_2860117_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931099.1|2860113_2860908_-	N-formylglutamate deformylase	NA	NA	NA	NA	NA
WP_010931100.1|2860939_2861644_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010931101.1|2861718_2862519_-	SURF1 family protein	NA	NA	NA	NA	NA
WP_003809276.1|2862515_2862923_-	cytochrome o ubiquinol oxidase subunit IV	NA	NA	NA	NA	NA
WP_003819722.1|2862919_2863561_-	cytochrome o ubiquinol oxidase subunit III	NA	NA	NA	NA	NA
WP_010931102.1|2863553_2865554_-	cytochrome o ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
WP_010931103.1|2866814_2868146_+	MFS transporter	NA	NA	NA	NA	NA
WP_005012067.1|2868142_2869093_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931105.1|2870799_2871066_-	accessory factor UbiK family protein	NA	NA	NA	NA	NA
WP_003812839.1|2871773_2872112_+	P-II family nitrogen regulator	NA	NA	NA	NA	NA
WP_010931107.1|2876665_2877268_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931108.1|2877364_2878654_+	MFS transporter	NA	NA	NA	NA	NA
WP_003812846.1|2878711_2879443_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	31.0	1.4e-12
WP_010931109.1|2879439_2880243_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	23.5	7.9e-14
WP_003812851.1|2880239_2881328_-	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
WP_003820410.1|2881324_2882254_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003812857.1|2882402_2883548_-	branched-chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930800.1|2883569_2884520_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_154698391.1|2884537_2884696_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931110.1|2884850_2888672_-	trifunctional transcriptional regulator/proline dehydrogenase/L-glutamate gamma-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
WP_010931111.1|2888828_2889497_-	membrane integrity-associated transporter subunit PqiC	NA	NA	NA	NA	NA
WP_014905522.1|2889501_2891175_-	MCE family protein	NA	NA	NA	NA	NA
WP_003820402.1|2891193_2892513_-	PqiA/YebS family transporter subunit	NA	NA	NA	NA	NA
WP_010931114.1|2892517_2894833_-|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	protease	A0A223W0B1	Agrobacterium_phage	41.9	4.1e-164
WP_010931115.1|2894888_2897057_-	penicillin-binding protein 1C	NA	NA	NA	NA	NA
WP_010931116.1|2897053_2902243_-	alpha-2-macroglobulin family protein	NA	NA	NA	NA	NA
WP_003820400.1|2902332_2902647_-|protease	ATP-dependent Clp protease adapter ClpS	protease	A0A1B1IT64	uncultured_Mediterranean_phage	43.8	1.2e-10
WP_003812875.1|2902874_2903120_+	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	76.6	1.3e-20
WP_003820399.1|2903214_2903733_+	DUF192 domain-containing protein	NA	A0A1B1IUW8	uncultured_Mediterranean_phage	42.2	5.1e-14
WP_010931117.1|2903832_2905038_-	3-oxoadipyl-CoA thiolase	NA	NA	NA	NA	NA
WP_019247560.1|2905153_2906551_-	chloride channel protein	NA	NA	NA	NA	NA
WP_010931119.1|2906667_2907246_-	superoxide dismutase [Fe]	NA	NA	NA	NA	NA
WP_010931120.1|2907318_2908710_-	exodeoxyribonuclease VII large subunit	NA	A0A1V0SD82	Indivirus	32.0	1.4e-29
WP_005012067.1|2908877_2909828_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812889.1|2910108_2910729_+	MotA/TolQ/ExbB proton channel family protein	NA	NA	NA	NA	NA
WP_010931122.1|2910725_2911139_+	biopolymer transporter ExbD	NA	NA	NA	NA	NA
WP_010931123.1|2911135_2912179_+	tetraacyldisaccharide 4'-kinase	NA	NA	NA	NA	NA
WP_003812895.1|2912234_2912423_+	Trm112 family protein	NA	NA	NA	NA	NA
WP_010931124.1|2912432_2913197_+	3-deoxy-manno-octulosonate cytidylyltransferase	NA	NA	NA	NA	NA
WP_010931125.1|2913287_2913944_+	adenylate kinase	NA	NA	NA	NA	NA
WP_010931126.1|2914035_2914794_+	3-hydroxyacyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_010931127.1|2914819_2916421_+	murein biosynthesis integral membrane protein MurJ	NA	NA	NA	NA	NA
WP_010931128.1|2916621_2917626_+	FecR domain-containing protein	NA	NA	NA	NA	NA
WP_003812908.1|2917726_2917990_+	30S ribosomal protein S20	NA	NA	NA	NA	NA
WP_010931129.1|2918107_2918884_-	2-dehydro-3-deoxyglucarate aldolase	NA	NA	NA	NA	NA
WP_005012067.1|2919474_2920425_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931130.1|2922808_2923921_-	Ldh family oxidoreductase	NA	NA	NA	NA	NA
WP_010929584.1|2923977_2924928_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 25
NZ_CP010259	Bordetella pertussis strain I518 chromosome, complete genome	4105350	2955314	2994503	4105350	transposase	Planktothrix_phage(50.0%)	37	NA	NA
WP_005012067.1|2955314_2956265_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_162268686.1|2956282_2956432_+	hypothetical protein	NA	NA	NA	NA	NA
WP_023852715.1|2956385_2957282_-	inositol monophosphatase	NA	NA	NA	NA	NA
WP_003814547.1|2959559_2961785_+	glycoside hydrolase family 31 protein	NA	NA	NA	NA	NA
WP_003814544.1|2961949_2963038_+	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	36.4	8.7e-32
WP_019247918.1|2962994_2963648_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931144.1|2963695_2964493_+	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930176.1|2965024_2965975_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247277.1|2966049_2967204_+	iron-containing alcohol dehydrogenase	NA	NA	NA	NA	NA
WP_005012067.1|2967260_2968211_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814535.1|2968309_2968615_-	antibiotic biosynthesis monooxygenase	NA	NA	NA	NA	NA
WP_003820797.1|2968643_2969078_-	DUF126 domain-containing protein	NA	NA	NA	NA	NA
WP_010931147.1|2969079_2970324_-	DUF521 domain-containing protein	NA	NA	NA	NA	NA
WP_003820799.1|2970320_2971031_-	FadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_033446288.1|2971045_2971957_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931149.1|2972319_2972724_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247890.1|2972720_2973179_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_019247891.1|2973185_2974094_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_010931150.1|2974090_2974957_+	sugar ABC transporter permease	NA	NA	NA	NA	NA
WP_003814524.1|2974943_2975771_+	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
WP_003820806.1|2975781_2976909_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	32.3	1.2e-23
WP_023852748.1|2977986_2979225_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931152.1|2979266_2980529_+	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_010931153.1|2980535_2981288_+	DNA-binding protein	NA	NA	NA	NA	NA
WP_019248355.1|2981339_2981525_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003820813.1|2981800_2982265_+	redox-sensitive transcriptional activator SoxR	NA	NA	NA	NA	NA
WP_003820814.1|2982296_2982956_+	DNA-3-methyladenine glycosylase I	NA	NA	NA	NA	NA
WP_010931154.1|2983100_2985209_+	AsmA family protein	NA	NA	NA	NA	NA
WP_023852714.1|2985205_2986156_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931155.1|2986259_2986880_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931156.1|2986971_2987724_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_019248356.1|2988858_2989983_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247402.1|2990028_2990397_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|2990638_2991589_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247492.1|2992624_2993167_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023998107.1|2993364_2993535_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|2993552_2994503_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 27
NZ_CP010259	Bordetella pertussis strain I518 chromosome, complete genome	4105350	3379999	3433740	4105350	transposase	Staphylococcus_phage(33.33%)	48	NA	NA
WP_077069052.1|3379999_3380950_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931336.1|3381354_3381999_-	urease accessory protein UreG	NA	NA	NA	NA	NA
WP_019247677.1|3382023_3382608_-	urease accessory protein UreF	NA	NA	NA	NA	NA
WP_014905506.1|3382708_3383326_-	urease accessory protein UreE	NA	NA	NA	NA	NA
WP_010931337.1|3383328_3385044_-	urease subunit alpha	NA	NA	NA	NA	NA
WP_010931338.1|3385040_3385349_-	urease subunit beta	NA	NA	NA	NA	NA
WP_003814828.1|3385365_3385983_-	HupE/UreJ family protein	NA	NA	NA	NA	NA
WP_010931340.1|3386027_3386330_-	urease subunit gamma	NA	NA	NA	NA	NA
WP_003814832.1|3386430_3387285_-	urease accessory protein UreD	NA	NA	NA	NA	NA
WP_124740609.1|3387472_3387697_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929281.1|3387866_3388139_+	MerR family DNA-binding transcriptional regulator	NA	NA	NA	NA	NA
WP_010929282.1|3388556_3388964_-	GFA family protein	NA	NA	NA	NA	NA
WP_010931341.1|3389333_3390128_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010927102.1|3390228_3391464_+	methylaspartate ammonia-lyase	NA	NA	NA	NA	NA
WP_003814852.1|3391532_3392549_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931342.1|3392560_3393937_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_003814856.1|3393933_3395130_+	MFS transporter	NA	NA	NA	NA	NA
WP_003814858.1|3395126_3396665_-	SpoVR family protein	NA	NA	NA	NA	NA
WP_010931343.1|3396661_3397921_-	YeaH/YhbH family protein	NA	NA	NA	NA	NA
WP_005012067.1|3399861_3400812_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931344.1|3401578_3402673_-	CoA transferase	NA	NA	NA	NA	NA
WP_019247312.1|3402665_3404000_-	AMP-binding protein	NA	NA	NA	NA	NA
WP_003808193.1|3403953_3404637_-	TetR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003808195.1|3404662_3405826_-	acyl-CoA dehydrogenase family protein	NA	NA	NA	NA	NA
WP_004566224.1|3405822_3406824_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010931346.1|3406823_3407696_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010931347.1|3407692_3408442_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	27.8	1.9e-09
WP_010931348.1|3408438_3409230_-	ATP-binding cassette domain-containing protein	NA	A0A1M7XV31	Cedratvirus	29.4	1.7e-08
WP_010931349.1|3409226_3410366_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_047122778.1|3410641_3411427_+	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_014486103.1|3411460_3412243_+	crotonase/enoyl-CoA hydratase family protein	NA	NA	NA	NA	NA
WP_010931351.1|3412246_3412636_+	OB-fold domain-containing protein	NA	NA	NA	NA	NA
WP_010931352.1|3413775_3414639_+	MaoC family dehydratase N-terminal domain-containing protein	NA	NA	NA	NA	NA
WP_010931353.1|3414674_3415763_+	NAD(P)H-binding protein	NA	NA	NA	NA	NA
WP_005013747.1|3415759_3416710_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247959.1|3417063_3420042_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003818344.1|3420968_3421847_+	fatty acid desaturase	NA	NA	NA	NA	NA
WP_005013747.1|3423795_3424746_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931354.1|3424742_3425210_-	ribonuclease HI	NA	J9Q745	Salmonella_phage	50.7	5.6e-36
WP_010931355.1|3425252_3426023_-	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_010927090.1|3426043_3426844_+	hydroxyacylglutathione hydrolase	NA	NA	NA	NA	NA
WP_010931356.1|3426854_3428264_+	transglycosylase SLT domain-containing protein	NA	NA	NA	NA	NA
WP_003814739.1|3428358_3429144_+	enoyl-ACP reductase FabI	NA	NA	NA	NA	NA
WP_010931561.1|3429383_3430400_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003814742.1|3430507_3430900_-	OsmC family protein	NA	NA	NA	NA	NA
WP_010931357.1|3431037_3431718_+	tellurite resistance TerB family protein	NA	NA	NA	NA	NA
WP_023994844.1|3431722_3432694_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930179.1|3432789_3433740_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 28
NZ_CP010259	Bordetella pertussis strain I518 chromosome, complete genome	4105350	3439895	3499195	4105350	transposase,tRNA	Acinetobacter_phage(27.27%)	48	NA	NA
WP_003820957.1|3439895_3441659_+|tRNA	glutamine--tRNA ligase/YqeY domain fusion protein	tRNA	A0A222YZ70	Escherichia_phage	50.0	5.0e-162
WP_010931362.1|3441770_3442649_+	septum site-determining protein MinC	NA	NA	NA	NA	NA
WP_003814250.1|3442761_3443577_+	septum site-determining protein MinD	NA	NA	NA	NA	NA
WP_003814252.1|3443580_3443832_+	cell division topological specificity factor MinE	NA	NA	NA	NA	NA
WP_010929632.1|3443916_3444933_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003814254.1|3445263_3445485_-	glycine zipper 2TM domain-containing protein	NA	NA	NA	NA	NA
WP_019247693.1|3447845_3448763_-	DMT family transporter	NA	NA	NA	NA	NA
WP_019247692.1|3449260_3450469_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931365.1|3450548_3452120_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003814275.1|3452237_3453173_-	glycosyltransferase family 2 protein	NA	NA	NA	NA	NA
WP_003814277.1|3453361_3454306_+	LysR family transcriptional regulator	NA	A0A2P0ZL89	Lactobacillus_phage	23.2	8.4e-07
WP_003814283.1|3454873_3460591_+	excinuclease ABC subunit UvrA	NA	A0A1B1IVR3	uncultured_Mediterranean_phage	39.5	1.0e-195
WP_010931367.1|3460596_3461724_+	aminodeoxychorismate synthase component I	NA	S4VT78	Pandoravirus	37.8	3.8e-38
WP_003814287.1|3461779_3462406_+	aminotransferase class IV	NA	NA	NA	NA	NA
WP_010931363.1|3462677_3463694_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010927020.1|3463789_3464500_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010931368.1|3464496_3465486_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931369.1|3465581_3467213_+	AMP-binding protein	NA	NA	NA	NA	NA
WP_010931370.1|3467215_3467953_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247745.1|3468108_3468981_-|tRNA	tRNA threonylcarbamoyladenosine dehydratase	tRNA	NA	NA	NA	NA
WP_003814298.1|3469249_3470470_+	MFS transporter	NA	NA	NA	NA	NA
WP_003814300.1|3470466_3471126_+	gamma-glutamylcyclotransferase	NA	NA	NA	NA	NA
WP_003814302.1|3471197_3471830_+	pyridoxamine 5'-phosphate oxidase	NA	NA	NA	NA	NA
WP_010931372.1|3471859_3472378_+	flavin reductase family protein	NA	NA	NA	NA	NA
WP_010931373.1|3472388_3473498_+	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_003814312.1|3473544_3474399_+	formyltetrahydrofolate deformylase	NA	NA	NA	NA	NA
WP_010931374.1|3474400_3475303_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929969.1|3476525_3477476_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023997720.1|3479232_3480222_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247413.1|3480218_3480377_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931375.1|3480397_3481186_-	indole-3-glycerol phosphate synthase TrpC	NA	A0A0P0IR83	Acinetobacter_phage	53.0	5.1e-66
WP_003817833.1|3481182_3482214_-	anthranilate phosphoribosyltransferase	NA	A0A0N7IRD9	Acinetobacter_phage	42.7	7.4e-73
WP_003815390.1|3482232_3482796_-	aminodeoxychorismate/anthranilate synthase component II	NA	A0A0P0IKJ1	Acinetobacter_phage	62.1	1.1e-65
WP_010931376.1|3482851_3484372_-	anthranilate synthase component I	NA	S4VT78	Pandoravirus	32.1	9.0e-43
WP_010931377.1|3484635_3485340_-	phosphoglycolate phosphatase	NA	NA	NA	NA	NA
WP_003815384.1|3485347_3486085_-	ribulose-phosphate 3-epimerase	NA	NA	NA	NA	NA
WP_003815381.1|3486190_3486565_+	Co2+/Mg2+ efflux protein ApaG	NA	NA	NA	NA	NA
WP_003815379.1|3486607_3487897_+	murein transglycosylase A	NA	NA	NA	NA	NA
WP_010931378.1|3487893_3489063_+	UbiH/UbiF family hydroxylase	NA	NA	NA	NA	NA
WP_010931379.1|3489059_3489899_+	thiol:disulfide interchange protein DsbC	NA	NA	NA	NA	NA
WP_010931380.1|3489958_3490894_+	D-2-hydroxyacid dehydrogenase family protein	NA	A0A1J0F959	Only_Syngen_Nebraska_virus	27.7	6.4e-15
WP_005012067.1|3490906_3491857_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931381.1|3491955_3492918_-|tRNA	tRNA 2-thiocytidine(32) synthetase TtcA	tRNA	A0A0U2S5Z2	Escherichia_phage	64.5	4.6e-93
WP_003817821.1|3492949_3493309_-	dihydroneopterin aldolase	NA	NA	NA	NA	NA
WP_010931382.1|3493433_3494336_+	NAD(P)/FAD-dependent oxidoreductase	NA	G3MA85	Bacillus_virus	24.0	1.9e-08
WP_010931383.1|3494337_3496110_-	M61 family metallopeptidase	NA	NA	NA	NA	NA
WP_003815367.1|3496144_3496921_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_023852617.1|3498244_3499195_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 29
NZ_CP010259	Bordetella pertussis strain I518 chromosome, complete genome	4105350	3514133	3572206	4105350	transposase,tRNA	Planktothrix_phage(12.5%)	47	NA	NA
WP_005012808.1|3514133_3515084_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931392.1|3515212_3516346_-	M20 family metallopeptidase	NA	NA	NA	NA	NA
WP_010931393.1|3516389_3517295_-	hydrolase	NA	NA	NA	NA	NA
WP_023852622.1|3517297_3518998_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	32.7	1.0e-15
WP_010931394.1|3518994_3519915_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_003817805.1|3519922_3520900_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931395.1|3520958_3521993_-	succinylglutamate desuccinylase/aspartoacylase family protein	NA	NA	NA	NA	NA
WP_003815317.1|3523967_3524204_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931396.1|3524330_3525194_-	NAD(P)H-hydrate dehydratase	NA	NA	NA	NA	NA
WP_003815315.1|3525282_3526104_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003815313.1|3526183_3526921_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010931397.1|3526917_3527910_-	nitronate monooxygenase	NA	NA	NA	NA	NA
WP_003817794.1|3528023_3528686_+	TetR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931399.1|3528730_3529879_+	acyl-CoA dehydrogenase family protein	NA	NA	NA	NA	NA
WP_010931400.1|3532202_3533153_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014486105.1|3533493_3534444_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|3534542_3535493_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_029443756.1|3535789_3536287_+	cupredoxin family protein	NA	NA	NA	NA	NA
WP_010931403.1|3536329_3538105_+	copper resistance system multicopper oxidase	NA	NA	NA	NA	NA
WP_010931404.1|3538112_3538979_+	copper resistance protein B	NA	NA	NA	NA	NA
WP_019249391.1|3538985_3539720_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010931406.1|3540889_3541684_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003815296.1|3541973_3542564_+	cysteine dioxygenase	NA	NA	NA	NA	NA
WP_010931407.1|3542597_3543926_-	amidase	NA	NA	NA	NA	NA
WP_010931408.1|3544000_3545146_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_014905478.1|3545257_3546256_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_033446233.1|3546218_3546653_+	carbon monoxide dehydrogenase	NA	NA	NA	NA	NA
WP_010929974.1|3548169_3549054_+	DMT family transporter	NA	NA	NA	NA	NA
WP_010929973.1|3549050_3550256_-	cardiolipin synthase ClsB	NA	NA	NA	NA	NA
WP_010929972.1|3550252_3551113_-	endonuclease/exonuclease/phosphatase family protein	NA	NA	NA	NA	NA
WP_003807038.1|3551225_3553016_-|tRNA	aspartate--tRNA ligase	tRNA	A0A1V0SAC0	Catovirus	25.5	6.5e-08
WP_003807035.1|3553056_3553722_-	DUF502 domain-containing protein	NA	A0A2I7S9X1	Vibrio_phage	28.4	6.7e-11
WP_010929971.1|3553722_3554031_-	FmdB family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929970.1|3554196_3555483_-	putative Na+/H+ antiporter	NA	NA	NA	NA	NA
WP_010929969.1|3556916_3557867_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929968.1|3559818_3561033_-	formate-dependent phosphoribosylglycinamide formyltransferase	NA	NA	NA	NA	NA
WP_003815171.1|3561138_3562128_+	KpsF/GutQ family sugar-phosphate isomerase	NA	A0A2P0VNK5	Tetraselmis_virus	37.7	4.3e-38
WP_003815172.1|3562124_3562733_+	HAD-IIIA family hydrolase	NA	E3T535	Cafeteria_roenbergensis_virus	26.1	5.2e-10
WP_010929967.1|3562745_3563375_+	LPS export ABC transporter periplasmic protein LptC	NA	NA	NA	NA	NA
WP_003815175.1|3563371_3563992_+	lipopolysaccharide transport periplasmic protein LptA	NA	NA	NA	NA	NA
WP_003815177.1|3564023_3564815_+	LPS export ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	27.4	9.5e-20
WP_010929966.1|3565666_3566122_+	PTS sugar transporter subunit IIA	NA	NA	NA	NA	NA
WP_010929965.1|3566140_3567067_+	HPr kinase/phosphorylase	NA	NA	NA	NA	NA
WP_010929964.1|3567120_3568407_-	cytochrome c	NA	NA	NA	NA	NA
WP_003815183.1|3569337_3570210_+	RNase adapter RapZ	NA	A0A1P8D5W0	Corynebacterium_phage	34.5	2.4e-08
WP_010929963.1|3570206_3571157_+	septal ring lytic transglycosylase RlpA family protein	NA	F5B3X9	Synechococcus_phage	47.2	6.9e-17
WP_005012067.1|3571255_3572206_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
