The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP010257	Bordetella pertussis strain I496 chromosome, complete genome	4096713	27282	70036	4096713	transposase,tRNA	Synechococcus_phage(50.0%)	41	NA	NA
WP_010929577.1|27282_28233_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023995007.1|28314_28650_-	CoA transferase	NA	NA	NA	NA	NA
WP_010929578.1|28674_29109_-	OB-fold domain-containing protein	NA	NA	NA	NA	NA
WP_019247164.1|29141_30359_-	thiolase family protein	NA	NA	NA	NA	NA
WP_010929580.1|30364_30862_-	MaoC family dehydratase	NA	NA	NA	NA	NA
WP_019247165.1|31069_32005_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929582.1|32214_33006_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010929583.1|33048_34470_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_010929584.1|34625_35576_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814398.1|35572_36763_-	MFS transporter	NA	NA	NA	NA	NA
WP_010929585.1|37012_37924_+|tRNA	glycine--tRNA ligase subunit alpha	tRNA	NA	NA	NA	NA
WP_010929586.1|37925_40064_+|tRNA	glycine--tRNA ligase subunit beta	tRNA	NA	NA	NA	NA
WP_003814404.1|40060_40600_+	D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase	NA	NA	NA	NA	NA
WP_003814405.1|40603_41332_+	1-acyl-sn-glycerol-3-phosphate acyltransferase	NA	NA	NA	NA	NA
WP_010929587.1|41318_42212_+	M48 family metallopeptidase	NA	NA	NA	NA	NA
WP_019247766.1|42282_42678_+	lactoylglutathione lyase	NA	NA	NA	NA	NA
WP_003814412.1|42687_43218_+	peptide deformylase	NA	E3SLL2	Synechococcus_phage	35.4	3.7e-12
WP_010929588.1|43663_44614_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929589.1|45200_45749_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815265.1|45720_45957_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003815255.1|46084_46978_+	AEC family transporter	NA	NA	NA	NA	NA
WP_010929590.1|48147_49395_+	homoserine O-acetyltransferase	NA	NA	NA	NA	NA
WP_003817748.1|49391_50006_+	methionine biosynthesis protein MetW	NA	NA	NA	NA	NA
WP_010929591.1|50141_51092_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_029443813.1|51134_52391_+	muropeptide transporter	NA	NA	NA	NA	NA
WP_010929592.1|53622_54357_-	aspartate/glutamate racemase family protein	NA	NA	NA	NA	NA
WP_019247224.1|54362_54953_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.6	3.2e-20
WP_003817737.1|54977_55667_-	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_023852650.1|55663_56425_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010929594.1|56504_57404_-	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_005012808.1|57497_58448_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929595.1|59248_60475_-	type II toxin-antitoxin system HipA family toxin	NA	NA	NA	NA	NA
WP_047122776.1|60474_60888_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010929597.1|61077_62019_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019248755.1|62442_63417_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929599.1|63473_64055_-	DJ-1/PfpI family protein	NA	NA	NA	NA	NA
WP_010929600.1|64067_64370_-	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA	NA
WP_029443770.1|64488_65547_-	2Fe-2S iron-sulfur cluster binding domain-containing protein	NA	NA	NA	NA	NA
WP_019247832.1|65581_66853_-	TRAP transporter large permease	NA	NA	NA	NA	NA
WP_010929603.1|67482_68664_-	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929584.1|69085_70036_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 2
NZ_CP010257	Bordetella pertussis strain I496 chromosome, complete genome	4096713	77634	136108	4096713	transposase,tRNA	Planktothrix_phage(22.22%)	54	NA	NA
WP_005012067.1|77634_78585_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_041166334.1|78659_79604_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929608.1|79600_81475_-	O-antigen biosynthesis protein WlbL	NA	A0A2P1ELS8	Moumouvirus	26.9	2.0e-23
WP_003807102.1|82822_83527_-	O-antigen biosynthesis protein WlbI	NA	NA	NA	NA	NA
WP_010929609.1|83523_84696_-	O-antigen biosynthesis protein WlbH	NA	NA	NA	NA	NA
WP_010929610.1|84891_85485_-	O-antigen biosynthesis protein WlbG	NA	NA	NA	NA	NA
WP_010929611.1|85481_86714_-	O-antigen biosynthesis protein WlbF	NA	NA	NA	NA	NA
WP_010929612.1|86731_87991_-	O-antigen biosynthesis protein WlbE	NA	NA	NA	NA	NA
WP_010929613.1|88014_89103_-	O-antigen biosynthesis protein WlbD	NA	A0A0N9R0B2	Chrysochromulina_ericina_virus	36.3	4.8e-46
WP_010929614.1|89110_90211_-	O-antigen biosynthesis protein WlbC	NA	A0A2K9L0G1	Tupanvirus	29.7	3.3e-31
WP_003807114.1|90214_90790_-	O-antigen biosynthesis protein WlbB	NA	NA	NA	NA	NA
WP_003807115.1|90793_91846_-	O-antigen biosynthesis protein WlbA	NA	NA	NA	NA	NA
WP_010929615.1|91976_92984_+	lipopolysaccharide heptosyltransferase I	NA	NA	NA	NA	NA
WP_010929616.1|92985_94272_+	3-deoxy-D-manno-octulosonic acid transferase	NA	NA	NA	NA	NA
WP_003807124.1|94288_94444_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929617.1|94468_95272_-	type III pantothenate kinase	NA	NA	NA	NA	NA
WP_010929618.1|95268_96135_-	biotin--[acetyl-CoA-carboxylase] ligase	NA	NA	NA	NA	NA
WP_010929619.1|96209_97340_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_003807131.1|97339_98179_+	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	32.4	9.1e-21
WP_010929620.1|99111_99714_+	membrane integrity-associated transporter subunit PqiC	NA	NA	NA	NA	NA
WP_010929621.1|99743_100397_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003807138.1|100529_101786_+	D-alanyl-D-alanine carboxypeptidase	NA	B6DZZ7	Stx2-converting_phage	40.5	6.2e-66
WP_010929622.1|101833_102733_+	D-amino acid aminotransferase	NA	NA	NA	NA	NA
WP_003818417.1|102808_103084_+	YbeD family protein	NA	NA	NA	NA	NA
WP_010929623.1|103091_103754_+	lipoyl(octanoyl) transferase LipB	NA	NA	NA	NA	NA
WP_003807146.1|103815_104817_+	lipoyl synthase	NA	NA	NA	NA	NA
WP_003807148.1|104831_105380_-	dTDP-4-dehydrorhamnose 3,5-epimerase	NA	A0A291LA62	Escherichia_phage	53.4	3.7e-47
WP_010929624.1|105437_106334_-	dTDP-4-dehydrorhamnose reductase	NA	NA	NA	NA	NA
WP_010929625.1|106330_107392_-	dTDP-glucose 4,6-dehydratase	NA	A0A1D7XFE8	Escherichia_phage	44.8	1.6e-78
WP_010929626.1|107427_108378_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929627.1|109277_110471_+	cystathionine beta-lyase	NA	NA	NA	NA	NA
WP_010929628.1|110552_111182_-	thiol:disulfide interchange protein DsbA/DsbL	NA	NA	NA	NA	NA
WP_010927242.1|111243_111927_-	SPOR domain-containing protein	NA	NA	NA	NA	NA
WP_023853376.1|111936_113619_-|tRNA	arginine--tRNA ligase	tRNA	NA	NA	NA	NA
WP_003815933.1|113906_114254_+	DUF1840 domain-containing protein	NA	NA	NA	NA	NA
WP_003815930.1|114344_114662_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931363.1|114944_115961_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003815929.1|116036_116837_-	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
WP_003815927.1|116833_117709_-	sugar ABC transporter permease	NA	NA	NA	NA	NA
WP_010929633.1|117719_119012_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929634.1|119054_120095_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.7	6.0e-22
WP_010929635.1|120200_121022_-	phosphodiesterase	NA	NA	NA	NA	NA
WP_005012067.1|121122_122073_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014905488.1|122171_123077_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	31.7	9.8e-21
WP_003815918.1|123073_123907_-	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_010929637.1|124743_125754_-	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_019247800.1|125750_126140_-	substrate-binding domain-containing protein	NA	NA	NA	NA	NA
WP_010929638.1|127033_128287_+	amidase	NA	NA	NA	NA	NA
WP_010929639.1|128377_130078_-	2-isopropylmalate synthase	NA	NA	NA	NA	NA
WP_010929640.1|130504_131152_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023853393.1|131150_132590_+	RNA polymerase factor sigma-54	NA	NA	NA	NA	NA
WP_003815905.1|132682_132985_+	bacterioferritin-associated ferredoxin	NA	NA	NA	NA	NA
WP_010929512.1|133012_133891_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|135157_136108_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 3
NZ_CP010257	Bordetella pertussis strain I496 chromosome, complete genome	4096713	164893	225404	4096713	transposase,tRNA,protease	Diachasmimorpha_longicaudata_entomopoxvirus(11.11%)	51	NA	NA
WP_005015810.1|164893_165844_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929659.1|167287_168190_-	YgcG family protein	NA	NA	NA	NA	NA
WP_003815889.1|168167_168797_-	LemA family protein	NA	NA	NA	NA	NA
WP_010929660.1|169079_170510_+	DEAD/DEAH box helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	29.8	5.8e-44
WP_010929661.1|170543_171173_+	LysE family transporter	NA	NA	NA	NA	NA
WP_003815895.1|171221_172829_+	peptide chain release factor 3	NA	A0A2K9L6L3	Tupanvirus	37.8	9.3e-14
WP_010929663.1|172853_173537_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815898.1|173618_174095_-	bacterioferritin	NA	NA	NA	NA	NA
WP_010929591.1|174301_175252_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929664.1|176367_176895_+	META domain-containing protein	NA	NA	NA	NA	NA
WP_010929665.1|176986_177802_+	META and DUF4377 domain-containing protein	NA	NA	NA	NA	NA
WP_003808370.1|177862_178597_+	sulfurtransferase	NA	NA	NA	NA	NA
WP_010929666.1|178634_180713_-|tRNA	methionine--tRNA ligase	tRNA	A0A1V0SHR2	Klosneuvirus	23.6	1.5e-27
WP_003808374.1|180962_181235_-	hypothetical protein	NA	NA	NA	NA	NA
WP_033446322.1|181336_182422_+	iron-sulfur cluster carrier protein ApbC	NA	NA	NA	NA	NA
WP_010929668.1|182425_184330_+	BamA/TamA family outer membrane protein	NA	NA	NA	NA	NA
WP_014486044.1|184326_188001_+	translocation/assembly module TamB domain-containing protein	NA	NA	NA	NA	NA
WP_010929670.1|188061_188625_+	dCTP deaminase	NA	S5VM63	Pseudomonas_phage	75.3	2.6e-72
WP_003808385.1|188632_189055_-	VOC family protein	NA	NA	NA	NA	NA
WP_010929671.1|189082_189502_-	VOC family protein	NA	NA	NA	NA	NA
WP_076879599.1|189530_190004_-	GNAT family N-acetyltransferase	NA	Q9AZG4	Lactococcus_phage	31.1	2.2e-11
WP_003808391.1|190103_190601_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003808393.1|190755_193026_+	arginine/lysine/ornithine decarboxylase	NA	NA	NA	NA	NA
WP_010929672.1|193074_194307_+	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010929591.1|194405_195356_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929673.1|195458_196094_+	superoxide dismutase	NA	Q56AR7	Bacillus_thuringiensis_phage	73.8	2.8e-83
WP_019248671.1|196090_196984_+	ZIP family metal transporter	NA	NA	NA	NA	NA
WP_010929675.1|197378_198479_+	glycine cleavage system aminomethyltransferase GcvT	NA	NA	NA	NA	NA
WP_010929676.1|198560_198935_+	glycine cleavage system protein GcvH	NA	NA	NA	NA	NA
WP_010929677.1|198994_201859_+	aminomethyl-transferring glycine dehydrogenase	NA	E3SN07	Prochlorococcus_phage	51.4	1.2e-261
WP_010929678.1|202003_202744_-	FadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929679.1|202813_204025_+	CoA transferase	NA	NA	NA	NA	NA
WP_010929680.1|204053_205022_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931070.1|205635_206586_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929699.1|206742_207066_+	phosphate starvation-inducible protein	NA	NA	NA	NA	NA
WP_023853200.1|207170_208211_-	cyclase family protein	NA	NA	NA	NA	NA
WP_010929697.1|208216_208996_-	3-oxoadipate enol-lactonase	NA	NA	NA	NA	NA
WP_003807672.1|209041_209338_-	YciI family protein	NA	NA	NA	NA	NA
WP_003807674.1|209363_209639_-	muconolactone Delta-isomerase	NA	NA	NA	NA	NA
WP_003819086.1|209695_210340_-	CoA transferase subunit B	NA	NA	NA	NA	NA
WP_010929696.1|210339_211026_-	3-oxoacid CoA-transferase subunit A	NA	NA	NA	NA	NA
WP_010929695.1|211155_212007_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929694.1|212057_212783_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010929693.1|212814_214164_-	short-chain fatty acid transporter	NA	NA	NA	NA	NA
WP_010929692.1|214275_215208_-	3-hydroxyacyl-CoA dehydrogenase family protein	NA	NA	NA	NA	NA
WP_033455792.1|215665_218461_-|protease	serine protease autotransporter SphB1	protease	NA	NA	NA	NA
WP_010929690.1|219054_221997_-	phosphoenolpyruvate carboxylase	NA	NA	NA	NA	NA
WP_010929689.1|222068_222788_+	7-cyano-7-deazaguanine synthase QueC	NA	A0A0A0RPC6	Escherichia_phage	43.9	8.0e-50
WP_010929688.1|222826_223375_-	N-acetyltransferase	NA	A0A2H4J136	uncultured_Caudovirales_phage	41.7	1.2e-21
WP_010929687.1|223529_224429_+	virginiamycin B lyase	NA	NA	NA	NA	NA
WP_005012808.1|224453_225404_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 4
NZ_CP010257	Bordetella pertussis strain I496 chromosome, complete genome	4096713	233336	286924	4096713	transposase,tRNA,protease	Bacillus_phage(25.0%)	48	NA	NA
WP_005012067.1|233336_234287_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010927663.1|234373_235324_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930742.1|235320_236271_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929700.1|236369_237167_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_003814363.1|238116_238527_+	carboxymuconolactone decarboxylase family protein	NA	NA	NA	NA	NA
WP_003814358.1|239548_240292_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814356.1|240335_241379_-	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003814355.1|241549_243652_+	TRAP transporter large permease subunit	NA	NA	NA	NA	NA
WP_003814351.1|245062_246019_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929701.1|246037_246529_-	2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase	NA	NA	NA	NA	NA
WP_010929702.1|246525_247881_-	polynucleotide adenylyltransferase PcnB	NA	A0A1B1IVF3	uncultured_Mediterranean_phage	36.8	3.4e-25
WP_010929703.1|247881_248580_-	HAD-IB family hydrolase	NA	NA	NA	NA	NA
WP_010929704.1|248576_249278_-	DnaA regulatory inactivator Hda	NA	NA	NA	NA	NA
WP_003814339.1|249530_250580_+	phosphoribosylformylglycinamidine cyclo-ligase	NA	Q58MH8	Prochlorococcus_phage	43.6	5.6e-68
WP_003814337.1|250685_251627_-|tRNA	tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA	tRNA	NA	NA	NA	NA
WP_010929705.1|251623_253513_-	DNA mismatch repair endonuclease MutL	NA	A0A1B2LRQ5	Wolbachia_phage	32.8	3.3e-79
WP_003814332.1|253599_254238_+	VTT domain-containing protein	NA	NA	NA	NA	NA
WP_019247543.1|254380_255766_-	N-acetylmuramoyl-L-alanine amidase	NA	A0A2H4JCM7	uncultured_Caudovirales_phage	30.3	4.5e-17
WP_010929706.1|255696_256233_-|tRNA	bifunctional alanine racemase/tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE	tRNA	NA	NA	NA	NA
WP_010929707.1|256384_257776_+	class II fumarate hydratase	NA	NA	NA	NA	NA
WP_010929708.1|257792_258773_-	AEC family transporter	NA	NA	NA	NA	NA
WP_003814324.1|258908_259892_+	tripartite tricarboxylate transporter substrate binding protein BugE	NA	NA	NA	NA	NA
WP_010929709.1|259956_260856_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814321.1|260962_262717_+	gamma-glutamyltransferase	NA	NA	NA	NA	NA
WP_010929710.1|262724_263849_-	CoA transferase	NA	NA	NA	NA	NA
WP_010929711.1|263862_264843_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_005012067.1|265573_266524_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929712.1|267083_267629_+	GbsR/MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929713.1|267712_269332_+	cytochrome d ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
WP_004567834.1|269347_270502_+	cytochrome d ubiquinol oxidase subunit II	NA	NA	NA	NA	NA
WP_003817696.1|270515_270641_+	cytochrome bd-I oxidase subunit CydX	NA	NA	NA	NA	NA
WP_010929714.1|270637_272389_+	thiol reductant ABC exporter subunit CydD	NA	W8CYL7	Bacillus_phage	23.8	3.4e-09
WP_010929715.1|272385_274065_+	thiol reductant ABC exporter subunit CydC	NA	W8CYL7	Bacillus_phage	27.6	3.6e-16
WP_010929716.1|274127_274676_+	adenine phosphoribosyltransferase	NA	A0A1V0SKE5	Klosneuvirus	43.1	1.3e-28
WP_010929717.1|275818_276097_+	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|277140_278091_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_173651708.1|278108_278255_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929718.1|278368_278530_+	DUF4224 domain-containing protein	NA	NA	NA	NA	NA
WP_010929719.1|278537_278678_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815821.1|279196_279646_-|protease	ClpXP protease specificity-enhancing factor	protease	NA	NA	NA	NA
WP_003815819.1|279655_280267_-	glutathione S-transferase N-terminal domain-containing protein	NA	NA	NA	NA	NA
WP_019247426.1|280425_281280_-	cytochrome c1	NA	NA	NA	NA	NA
WP_003815816.1|281299_282682_-	cytochrome bc complex cytochrome b subunit	NA	NA	NA	NA	NA
WP_003815815.1|282746_283388_-	ubiquinol-cytochrome c reductase iron-sulfur subunit	NA	NA	NA	NA	NA
WP_010929721.1|283527_283986_+	large conductance mechanosensitive channel protein MscL	NA	NA	NA	NA	NA
WP_010927226.1|284010_284787_-	Nif3-like dinuclear metal center hexameric protein	NA	NA	NA	NA	NA
WP_014906092.1|284840_285977_+	trypsin-like peptidase domain-containing protein	NA	W5SAB9	Pithovirus	31.2	1.2e-07
WP_005015810.1|285973_286924_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 5
NZ_CP010257	Bordetella pertussis strain I496 chromosome, complete genome	4096713	390857	448366	4096713	transposase	Orpheovirus(14.29%)	50	NA	NA
WP_005012067.1|390857_391808_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010927231.1|391944_392862_+	reductase	NA	NA	NA	NA	NA
WP_003815842.1|392858_393107_+	glutaredoxin family protein	NA	NA	NA	NA	NA
WP_003815840.1|393103_394309_+	CoA transferase	NA	NA	NA	NA	NA
WP_014486045.1|394381_395377_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_014486046.1|395399_396620_-	CoA transferase	NA	NA	NA	NA	NA
WP_014486047.1|396616_397261_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019248476.1|398991_399801_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_014486048.1|400105_401059_+	thioredoxin-disulfide reductase	NA	A0A2I2L5E1	Orpheovirus	42.5	5.6e-59
WP_014486049.1|401157_402141_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014486050.1|402067_402769_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_014486051.1|402817_403588_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_019247259.1|403584_404763_-	CoA transferase	NA	NA	NA	NA	NA
WP_014486052.1|404930_406637_-	thiamine pyrophosphate-requiring protein	NA	NA	NA	NA	NA
WP_014486053.1|406633_407530_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_014486054.1|407570_409160_-	rhodanese homology domain-containing protein	NA	NA	NA	NA	NA
WP_003807867.1|409209_410202_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003807865.1|410270_410870_-	hypothetical protein	NA	NA	NA	NA	NA
WP_014486055.1|411330_412311_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929577.1|412386_413337_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_047122777.1|413425_414340_+	DMT family transporter	NA	NA	NA	NA	NA
WP_010929782.1|414336_414996_+	LysE family translocator	NA	NA	NA	NA	NA
WP_003814709.1|415085_416009_+	alpha/beta fold hydrolase	NA	A0A1C9C5K3	Heterosigma_akashiwo_virus	27.2	4.8e-07
WP_010929783.1|416014_416470_-	multidrug/biocide efflux PACE transporter	NA	NA	NA	NA	NA
WP_010929784.1|416466_417570_-	ChbG/HpnK family deacetylase	NA	NA	NA	NA	NA
WP_157734656.1|417528_417798_+	GtrA family protein	NA	NA	NA	NA	NA
WP_010927086.1|417757_419377_-	glycosyltransferase family 39 protein	NA	NA	NA	NA	NA
WP_003814720.1|419373_420432_-	glycosyltransferase family 2 protein	NA	I1TED8	Salmonella_phage	40.5	2.8e-59
WP_033446199.1|420561_421056_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_022997984.1|421148_422126_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929785.1|422321_423527_+	sodium/glutamate symporter	NA	NA	NA	NA	NA
WP_010929786.1|423523_425035_+	TAXI family TRAP transporter solute-binding subunit	NA	NA	NA	NA	NA
WP_003814726.1|425050_426364_-	short-chain fatty acid transporter	NA	NA	NA	NA	NA
WP_003814728.1|426554_426734_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003814730.1|427143_427878_-	DNA polymerase III subunit epsilon	NA	A0A1X9SH08	Bradyrhizobium_phage	43.8	1.4e-41
WP_010929577.1|430322_431273_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247421.1|431404_431803_-	GTP-binding protein	NA	E4ZFJ7	Streptococcus_phage	44.3	9.0e-19
WP_003814701.1|432213_432684_-	universal stress protein	NA	NA	NA	NA	NA
WP_003820700.1|432772_433117_-	TIGR01244 family phosphatase	NA	NA	NA	NA	NA
WP_010929788.1|433216_434617_-	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
WP_010929789.1|436405_436924_-	MgtC/SapB family protein	NA	G3MA03	Bacillus_virus	38.9	2.1e-12
WP_003814694.1|437034_437790_+	TerC family protein	NA	A0A0R6PEZ3	Moraxella_phage	40.8	2.9e-42
WP_003814691.1|437985_439218_+	CoA transferase	NA	NA	NA	NA	NA
WP_010929791.1|439210_439996_+	crotonase/enoyl-CoA hydratase family protein	NA	NA	NA	NA	NA
WP_003814685.1|440062_441034_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003814681.1|441044_442022_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247419.1|442147_443320_+	acyl-CoA dehydrogenase family protein	NA	NA	NA	NA	NA
WP_010929793.1|443346_444375_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_003814674.1|444440_445634_+	acetyl-CoA C-acyltransferase	NA	NA	NA	NA	NA
WP_005012067.1|447415_448366_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 6
NZ_CP010257	Bordetella pertussis strain I496 chromosome, complete genome	4096713	589383	650574	4096713	transposase,protease	uncultured_Mediterranean_phage(40.0%)	56	NA	NA
WP_005013747.1|589383_590334_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023998122.1|590830_591700_+	phosphonate ABC transporter, permease protein PhnE	NA	NA	NA	NA	NA
WP_010931496.1|591696_592518_+	phosphonate ABC transporter, permease protein PhnE	NA	NA	NA	NA	NA
WP_019247235.1|592717_593209_+	CYTH domain-containing protein	NA	NA	NA	NA	NA
WP_019247236.1|593227_594301_+	CHAD domain-containing protein	NA	NA	NA	NA	NA
WP_023853086.1|594347_595451_-	signal recognition particle-docking protein FtsY	NA	NA	NA	NA	NA
WP_003808577.1|595526_596147_+	16S rRNA (guanine(966)-N(2))-methyltransferase RsmD	NA	NA	NA	NA	NA
WP_003808574.1|596167_596677_+	pantetheine-phosphate adenylyltransferase	NA	A0A1B1IVQ3	uncultured_Mediterranean_phage	42.1	1.2e-28
WP_003808570.1|596731_596983_+	YfhL family 4Fe-4S dicluster ferredoxin	NA	A0A1B1IWY9	uncultured_Mediterranean_phage	53.4	1.6e-18
WP_010931494.1|597046_598180_+	benzoate/H(+) symporter BenE family transporter	NA	NA	NA	NA	NA
WP_003808567.1|598187_598574_-	MOSC N-terminal beta barrel domain-containing protein	NA	NA	NA	NA	NA
WP_010931493.1|598570_601090_-	AsmA family protein	NA	NA	NA	NA	NA
WP_003808563.1|601518_601857_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003808562.1|601853_602360_+	SRPBCC family protein	NA	NA	NA	NA	NA
WP_010931492.1|602421_603222_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931491.1|603332_604274_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931490.1|604367_605903_-	M81 family metallopeptidase	NA	NA	NA	NA	NA
WP_010931489.1|607582_609433_-	dipeptide ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	29.2	1.6e-17
WP_003808549.1|609436_610270_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931488.1|610269_611211_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931487.1|611462_612434_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931486.1|612575_614864_+	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
WP_003808542.1|615170_616079_+	TauD/TfdA family dioxygenase	NA	NA	NA	NA	NA
WP_010931485.1|616133_617099_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_062810229.1|617173_618835_+	thiamine pyrophosphate-binding protein	NA	NA	NA	NA	NA
WP_010931483.1|618906_619617_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_154698388.1|619583_619748_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|619765_620716_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814152.1|621414_621798_+	membrane protein	NA	NA	NA	NA	NA
WP_010927005.1|621855_622458_+	DUF2946 family protein	NA	NA	NA	NA	NA
WP_003820995.1|622475_622877_-	DoxX family protein	NA	NA	NA	NA	NA
WP_003814158.1|623010_623904_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931481.1|623900_624482_+	NUDIX hydrolase	NA	NA	NA	NA	NA
WP_003814165.1|625276_626011_+	arginyltransferase	NA	NA	NA	NA	NA
WP_010931480.1|626051_627101_+	quinone-dependent dihydroorotate dehydrogenase	NA	NA	NA	NA	NA
WP_003814172.1|627248_627827_-	TIGR01841 family phasin	NA	NA	NA	NA	NA
WP_010931479.1|628213_629191_+	tripartite tricarboxylate transporter substrate binding protein BugD	NA	NA	NA	NA	NA
WP_010931478.1|629284_633679_-	dermonecrotic toxin	NA	NA	NA	NA	NA
WP_003814178.1|633879_634728_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931477.1|634886_635699_-	competence/damage-inducible protein A	NA	NA	NA	NA	NA
WP_005015810.1|635754_636705_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931453.1|636803_637604_-	EI24 domain-containing protein	NA	NA	NA	NA	NA
WP_003814185.1|637665_638049_+	thioredoxin family protein	NA	NA	NA	NA	NA
WP_010931454.1|638060_639494_-	DEAD/DEAH box helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	34.4	1.5e-52
WP_003814188.1|639700_640030_-	AzlD domain-containing protein	NA	NA	NA	NA	NA
WP_010931455.1|640032_640782_-	AzlC family ABC transporter permease	NA	NA	NA	NA	NA
WP_010931456.1|640964_641885_+	branched-chain amino acid transaminase	NA	NA	NA	NA	NA
WP_003814195.1|641931_642144_+	zinc-finger domain-containing protein	NA	NA	NA	NA	NA
WP_010931457.1|642166_642589_+	nuclear transport factor 2 family protein	NA	NA	NA	NA	NA
WP_010931458.1|642605_643706_+	alpha/beta fold hydrolase	NA	NA	NA	NA	NA
WP_010931459.1|643802_645320_-|protease	M48 family metalloprotease	protease	NA	NA	NA	NA
WP_003814203.1|645395_646235_+	UTP--glucose-1-phosphate uridylyltransferase GalU	NA	A0A127AW70	Bacillus_phage	48.9	1.1e-66
WP_003814205.1|646256_647138_-	cytochrome c oxidase assembly protein	NA	NA	NA	NA	NA
WP_003814206.1|647219_648314_-	porin	NA	NA	NA	NA	NA
WP_076879617.1|648607_649558_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_041166340.1|649632_650574_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 7
NZ_CP010257	Bordetella pertussis strain I496 chromosome, complete genome	4096713	655898	702089	4096713	transposase,tail,tRNA,terminase	uncultured_Caudovirales_phage(18.18%)	51	NA	NA
WP_023995141.1|655898_656924_+|tRNA	tRNA dihydrouridine synthase DusB	tRNA	NA	NA	NA	NA
WP_003814221.1|656964_657204_+	DNA-binding protein	NA	NA	NA	NA	NA
WP_010931464.1|657273_658863_+	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase	NA	Q58MG4	Prochlorococcus_phage	47.2	8.7e-65
WP_010931465.1|658862_659411_+	crossover junction endodeoxyribonuclease RuvC	NA	NA	NA	NA	NA
WP_003814226.1|659491_660064_+	Holliday junction branch migration protein RuvA	NA	NA	NA	NA	NA
WP_010927008.1|660082_660994_-	complex I NDUFA9 subunit family protein	NA	NA	NA	NA	NA
WP_003814230.1|661067_662036_-	threo-3-hydroxy-L-aspartate ammonia-lyase	NA	NA	NA	NA	NA
WP_010931466.1|662158_663232_+	Holliday junction branch migration DNA helicase RuvB	NA	A0A127AWE7	Bacillus_phage	25.7	2.3e-08
WP_010931467.1|663236_665057_-	DNA helicase RecQ	NA	L7RCS0	Acanthamoeba_polyphaga_moumouvirus	35.3	3.1e-74
WP_005015810.1|665133_666084_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_033446132.1|666172_666508_+	ASCH domain-containing protein	NA	NA	NA	NA	NA
WP_003819076.1|666641_667292_+	carbonic anhydrase	NA	NA	NA	NA	NA
WP_010931468.1|667313_668732_-	amidase	NA	NA	NA	NA	NA
WP_019248554.1|668801_669557_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019247734.1|669525_670284_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010931471.1|670294_671176_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010931472.1|671192_671900_+	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	25.4	8.2e-07
WP_010931473.1|671902_672661_+	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	24.4	4.4e-14
WP_010931474.1|672870_674613_+	nitrite/sulfite reductase	NA	NA	NA	NA	NA
WP_010925795.1|674605_675130_+	DUF934 domain-containing protein	NA	NA	NA	NA	NA
WP_010931475.1|675169_675964_-	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019248926.1|676131_677205_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|677303_678254_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247378.1|678505_678712_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931451.1|678783_679395_-	S24 family peptidase	NA	NA	NA	NA	NA
WP_023853179.1|679949_680201_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_161633094.1|680193_680883_+	hypothetical protein	NA	NA	NA	NA	NA
WP_023853183.1|680900_681122_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|681139_682090_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247942.1|682729_683215_+|transposase	transposase	transposase	C7U0W1	Enterobacteria_phage	61.5	7.3e-39
WP_010931447.1|683201_684479_+|terminase	terminase large subunit	terminase	A0A1B1P9C9	Acinetobacter_phage	64.7	2.4e-150
WP_010931446.1|684481_685900_+	DUF4055 domain-containing protein	NA	R9TF43	Synechococcus_phage	42.1	2.2e-99
WP_010931445.1|685928_686984_+	hypothetical protein	NA	A0A0H5BBX3	Pseudomonas_phage	50.6	2.6e-97
WP_010931444.1|686989_687232_+	hypothetical protein	NA	A0A0H5AUE5	Pseudomonas_phage	53.2	5.6e-16
WP_010931443.1|687354_687957_+	hypothetical protein	NA	R9TF81	Synechococcus_phage	43.6	7.9e-27
WP_005012808.1|688385_689336_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931442.1|690010_690262_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247789.1|690324_690807_+	hypothetical protein	NA	A0A2H4JE38	uncultured_Caudovirales_phage	37.1	1.8e-13
WP_010931440.1|690808_691009_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931439.1|691008_691404_+	hypothetical protein	NA	A0A2D2W284	Stenotrophomonas_phage	35.0	7.8e-07
WP_010931438.1|691400_691799_+	hypothetical protein	NA	I6PCW1	Cronobacter_phage	38.0	4.2e-16
WP_010931437.1|691795_692218_+	DUF4128 domain-containing protein	NA	NA	NA	NA	NA
WP_010931436.1|692225_692726_+	HNH endonuclease	NA	A0A1I9SEX5	Klebsiella_phage	45.1	4.4e-31
WP_010931435.1|692980_693499_+|tail	phage tail protein	tail	A0A1S5R1H0	Pseudomonas_phage	38.3	5.4e-24
WP_003813412.1|693508_693838_+|tail	phage tail assembly chaperone	tail	A0A2H4J121	uncultured_Caudovirales_phage	44.0	2.9e-15
WP_010931434.1|693855_694146_+	DUF1799 domain-containing protein	NA	A0A2H4JBP7	uncultured_Caudovirales_phage	45.2	3.7e-14
WP_010931433.1|694171_696784_+|tail	phage tail tape measure protein	tail	A0A2H4J107	uncultured_Caudovirales_phage	38.6	4.9e-105
WP_010931432.1|696793_697153_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931431.1|697220_697754_+	DUF1833 family protein	NA	A5A3Q9	Burkholderia_phage	46.9	1.1e-40
WP_010931430.1|697750_698140_+	C40 family peptidase	NA	A0A0G3EYJ9	Achromobacter_phage	50.0	3.0e-35
WP_010931429.1|698132_702089_+	DUF1983 domain-containing protein	NA	A0A0B5A1N2	Achromobacter_phage	40.8	3.9e-215
>prophage 8
NZ_CP010257	Bordetella pertussis strain I496 chromosome, complete genome	4096713	708255	762186	4096713	transposase,tRNA	Planktothrix_phage(50.0%)	46	NA	NA
WP_003814636.1|708255_709986_+|tRNA	proline--tRNA ligase	tRNA	A0A2K9L3R9	Tupanvirus	29.4	4.6e-11
WP_010931419.1|710038_710467_+	tol-pal system-associated acyl-CoA thioesterase	NA	NA	NA	NA	NA
WP_003814641.1|710469_711150_+	protein TolQ	NA	NA	NA	NA	NA
WP_003814643.1|711149_711608_+	protein TolR	NA	NA	NA	NA	NA
WP_010931418.1|711644_712619_+	cell envelope integrity protein TolA	NA	NA	NA	NA	NA
WP_010931417.1|712635_713952_+	Tol-Pal system protein TolB	NA	NA	NA	NA	NA
WP_003814650.1|713983_714481_+	peptidoglycan-associated lipoprotein Pal	NA	NA	NA	NA	NA
WP_003814652.1|714567_715257_+	tol-pal system protein YbgF	NA	NA	NA	NA	NA
WP_010931416.1|715256_716306_+	iron ABC transporter permease	NA	NA	NA	NA	NA
WP_003814657.1|716302_717097_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.6	2.4e-15
WP_019247923.1|717265_717616_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247922.1|717591_718149_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_005012808.1|719278_720229_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929184.1|722366_723596_+	spore maturation protein	NA	NA	NA	NA	NA
WP_003814419.1|723598_725041_-	pyruvate kinase	NA	NA	NA	NA	NA
WP_010931414.1|725145_726291_+	glycerate kinase	NA	W6LM47	Streptococcus_phage	42.2	1.7e-41
WP_010931413.1|726322_727120_-	16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA	NA	NA	NA	NA	NA
WP_010931412.1|727144_728704_-	chaperone SurA	NA	NA	NA	NA	NA
WP_010931411.1|728700_731073_-	LPS-assembly protein LptD	NA	NA	NA	NA	NA
WP_010931410.1|731182_732286_+	phosphotransferase	NA	NA	NA	NA	NA
WP_010931409.1|732285_732978_+	nucleotidyltransferase family protein	NA	NA	NA	NA	NA
WP_003814436.1|733121_733823_+	membrane protein	NA	NA	NA	NA	NA
WP_003814437.1|733807_734185_-	4a-hydroxytetrahydrobiopterin dehydratase	NA	NA	NA	NA	NA
WP_005012067.1|734916_735867_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814441.1|736026_736899_-	oxaloacetate decarboxylase	NA	NA	NA	NA	NA
WP_003814443.1|737239_737458_+	DUF1059 domain-containing protein	NA	NA	NA	NA	NA
WP_019247242.1|737497_738877_-	aminotransferase class III-fold pyridoxal phosphate-dependent enzyme	NA	NA	NA	NA	NA
WP_010929976.1|738918_740316_-	amidase family protein	NA	NA	NA	NA	NA
WP_010927038.1|740355_742008_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.8	6.0e-16
WP_010929977.1|742011_742896_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010929978.1|742895_743837_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010929979.1|743915_745535_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929980.1|745701_746517_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814459.1|746584_747154_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005013747.1|747154_748105_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814461.1|748759_749857_+	carboxynorspermidine decarboxylase	NA	NA	NA	NA	NA
WP_003814462.1|749890_751156_+	saccharopine dehydrogenase family protein	NA	NA	NA	NA	NA
WP_010929591.1|751313_752264_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929982.1|752507_753098_+	polyisoprenoid-binding protein	NA	NA	NA	NA	NA
WP_010929983.1|753113_755558_-	TonB-dependent siderophore receptor	NA	NA	NA	NA	NA
WP_003814467.1|755677_756649_-	FecR family protein	NA	NA	NA	NA	NA
WP_023852739.1|756780_757305_+	sigma-70 family RNA polymerase sigma factor	NA	NA	NA	NA	NA
WP_005012067.1|757264_758215_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929984.1|758437_760633_-	DUF1156 domain-containing protein	NA	NA	NA	NA	NA
WP_010929985.1|760705_761134_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_005012808.1|761235_762186_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 9
NZ_CP010257	Bordetella pertussis strain I496 chromosome, complete genome	4096713	853064	902328	4096713	transposase,holin	Vibrio_phage(33.33%)	40	NA	NA
WP_010929591.1|853064_854015_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247352.1|854032_854587_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003813949.1|854588_855023_+	PaaI family thioesterase	NA	NA	NA	NA	NA
WP_003813951.1|855019_855454_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003813952.1|855437_856241_-	phosphatase PAP2 family protein	NA	NA	NA	NA	NA
WP_003813954.1|856257_857073_-	metallophosphoesterase	NA	NA	NA	NA	NA
WP_019248500.1|857069_857885_-	diacylglycerol kinase	NA	NA	NA	NA	NA
WP_010930033.1|858031_858733_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003813960.1|858760_860719_-|holin	choline BCCT transporter BetT	holin	A0A2I7QNT1	Vibrio_phage	30.3	8.0e-28
WP_005013747.1|860801_861752_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930032.1|861972_862641_+	transcriptional regulator	NA	NA	NA	NA	NA
WP_010930031.1|862764_863871_+	efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
WP_010930030.1|863883_866997_+	MexW/MexI family multidrug efflux RND transporter permease subunit	NA	S5VTK5	Leptospira_phage	21.5	4.5e-57
WP_010930029.1|866993_868487_+	efflux transporter outer membrane subunit	NA	NA	NA	NA	NA
WP_010926969.1|868501_869173_+	transcriptional regulator	NA	NA	NA	NA	NA
WP_003813974.1|869216_869711_-	azurin	NA	NA	NA	NA	NA
WP_010930027.1|869851_870499_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_023853163.1|870602_872651_+	hydantoinase/oxoprolinase family protein	NA	NA	NA	NA	NA
WP_010930025.1|872647_874660_+	hydantoinase B/oxoprolinase family protein	NA	NA	NA	NA	NA
WP_010930024.1|874685_876020_+	FAD-binding oxidoreductase	NA	NA	NA	NA	NA
WP_003813981.1|876128_877121_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003813982.1|877187_879272_-	rhodanese-like domain-containing protein	NA	NA	NA	NA	NA
WP_010930023.1|879296_880268_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930022.1|880396_881428_-	succinylglutamate desuccinylase/aspartoacylase family protein	NA	NA	NA	NA	NA
WP_010930021.1|881431_882583_-	cystathionine beta-lyase	NA	NA	NA	NA	NA
WP_076879542.1|882753_883677_+	transcriptional regulator LrhA	NA	NA	NA	NA	NA
WP_003813987.1|883754_884579_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_023994644.1|884775_885792_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003813988.1|885988_886972_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930019.1|888570_889959_-	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_003813991.1|889989_890979_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003813992.1|891089_892322_-	methylaspartate ammonia-lyase	NA	NA	NA	NA	NA
WP_003813993.1|892603_893404_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930018.1|893426_895658_-|holin	choline BCCT transporter BetT	holin	NA	NA	NA	NA
WP_010930017.1|896445_896892_-	preprotein translocase subunit SecG	NA	NA	NA	NA	NA
WP_003813996.1|896913_897660_-	triose-phosphate isomerase	NA	NA	NA	NA	NA
WP_003813997.1|897803_898781_-	NAD(P)H-quinone oxidoreductase	NA	NA	NA	NA	NA
WP_010930016.1|899414_900026_+	PIN domain-containing protein	NA	K4HZX4	Acidithiobacillus_phage	32.5	3.3e-12
WP_003813999.1|900019_901237_-	threonine ammonia-lyase	NA	NA	NA	NA	NA
WP_005013747.1|901377_902328_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 10
NZ_CP010257	Bordetella pertussis strain I496 chromosome, complete genome	4096713	911940	976880	4096713	transposase	Bacillus_phage(18.18%)	58	NA	NA
WP_005012067.1|911940_912891_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930051.1|912887_914720_-	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	26.4	1.3e-27
WP_010930052.1|915118_915778_+	thiopurine S-methyltransferase	NA	NA	NA	NA	NA
WP_023852837.1|915871_916018_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003809770.1|916126_916294_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930054.1|916305_916986_-	DUF3313 domain-containing protein	NA	NA	NA	NA	NA
WP_010930055.1|917267_917984_+	flagellar brake protein	NA	NA	NA	NA	NA
WP_010930056.1|917998_919300_-	phospholipase A	NA	NA	NA	NA	NA
WP_029444137.1|921444_924333_+	HD domain-containing protein	NA	NA	NA	NA	NA
WP_010930057.1|924556_925909_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_004568140.1|925937_926459_+	acetyl-CoA carboxylase biotin carboxyl carrier protein	NA	NA	NA	NA	NA
WP_003819989.1|926455_927910_+	carboxylase	NA	NA	NA	NA	NA
WP_023852826.1|927944_928193_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247557.1|928298_929174_+	amidohydrolase	NA	NA	NA	NA	NA
WP_010930060.1|929199_930255_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930061.1|930267_931059_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930062.1|931091_932462_+	acetyl-CoA carboxylase biotin carboxylase subunit	NA	NA	NA	NA	NA
WP_005012067.1|933638_934589_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930064.1|934641_934863_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003810832.1|935022_935235_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003810835.1|935354_936473_+	mannose-6-phosphate isomerase	NA	NA	NA	NA	NA
WP_003810839.1|936978_937230_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930066.1|937342_938293_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003810840.1|938289_938673_-	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA	NA
WP_023852913.1|938727_940542_-	ABC transporter ATP-binding protein/permease	NA	W8CYL7	Bacillus_phage	27.9	5.7e-44
WP_010930068.1|940691_941519_+	aldo/keto reductase	NA	A0A2H4PQR8	Staphylococcus_phage	47.4	1.7e-67
WP_010930069.1|941564_942545_+	aldo/keto reductase	NA	NA	NA	NA	NA
WP_003810850.1|942541_942754_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003810851.1|942750_943932_-	PepSY domain-containing protein	NA	NA	NA	NA	NA
WP_019248496.1|944095_944830_+	metallophosphoesterase	NA	A0A2H4J0P0	uncultured_Caudovirales_phage	49.2	1.9e-62
WP_010930071.1|944831_947444_-	PBP1A family penicillin-binding protein	NA	NA	NA	NA	NA
WP_003810859.1|947579_949493_-	S9 family peptidase	NA	NA	NA	NA	NA
WP_010930072.1|950108_950519_-	PaaI family thioesterase	NA	NA	NA	NA	NA
WP_003810865.1|950616_951702_+	DNA polymerase IV	NA	NA	NA	NA	NA
WP_005012067.1|951800_952751_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930088.1|952747_953722_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003821497.1|953846_954758_+	LysR family transcriptional regulator	NA	Q6JIH3	Burkholderia_virus	27.6	4.4e-05
WP_004566317.1|955034_955427_-	type II toxin-antitoxin system HicB family antitoxin	NA	A0A0R6PJ17	Moraxella_phage	45.0	4.8e-25
WP_005012808.1|955556_956507_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930090.1|956536_956719_-	type II toxin-antitoxin system HicA family toxin	NA	A0A1L2JY37	Aeribacillus_phage	56.1	3.7e-12
WP_010930091.1|957491_958673_-	MFS transporter	NA	NA	NA	NA	NA
WP_010930092.1|958888_959566_-	HAD-IA family hydrolase	NA	NA	NA	NA	NA
WP_010930093.1|959562_960288_-	bifunctional 3-demethylubiquinone 3-O-methyltransferase/2-octaprenyl-6-hydroxy phenol methylase	NA	NA	NA	NA	NA
WP_010930094.1|960413_960995_-	OmpA family protein	NA	NA	NA	NA	NA
WP_010930095.1|961365_964047_+	DNA gyrase subunit A	NA	G3M9Z5	Bacillus_virus	33.5	3.2e-104
WP_010930096.1|964046_965180_+	3-phosphoserine/phosphohydroxythreonine transaminase	NA	M1Q1P2	Streptococcus_phage	44.0	6.4e-78
WP_010930097.1|965172_966258_+	prephenate dehydratase	NA	NA	NA	NA	NA
WP_010930098.1|966344_967244_+	prephenate dehydrogenase/arogenate dehydrogenase family protein	NA	NA	NA	NA	NA
WP_010930099.1|967240_968569_+	3-phosphoshikimate 1-carboxyvinyltransferase	NA	NA	NA	NA	NA
WP_010930100.1|968583_969255_+	(d)CMP kinase	NA	NA	NA	NA	NA
WP_010930101.1|969442_971158_+	30S ribosomal protein S1	NA	NA	NA	NA	NA
WP_010930102.1|971159_971519_+	integration host factor subunit beta	NA	NA	NA	NA	NA
WP_010930103.1|971710_972025_+	DUF1049 domain-containing protein	NA	NA	NA	NA	NA
WP_010930104.1|972067_973288_+	lipopolysaccharide assembly protein LapB	NA	NA	NA	NA	NA
WP_010930105.1|973284_974226_+	D-glycero-beta-D-manno-heptose-7-phosphate kinase	NA	A0A2H4N7X4	Lake_Baikal_phage	28.1	1.5e-16
WP_003821513.1|974222_975212_+	ADP-glyceromanno-heptose 6-epimerase	NA	E3SJ87	Synechococcus_phage	34.4	2.2e-26
WP_033446303.1|975246_975831_+	helix-hairpin-helix domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|975929_976880_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 11
NZ_CP010257	Bordetella pertussis strain I496 chromosome, complete genome	4096713	996280	1059416	4096713	transposase	Enterococcus_phage(16.67%)	54	NA	NA
WP_005012067.1|996280_997231_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930118.1|997335_998385_+	NADP(H)-dependent aldo-keto reductase	NA	NA	NA	NA	NA
WP_010929632.1|998522_999539_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010926548.1|1001047_1001620_-	chorismate lyase	NA	NA	NA	NA	NA
WP_010930119.1|1001679_1002411_+	rRNA pseudouridine synthase	NA	NA	NA	NA	NA
WP_029443805.1|1002462_1003380_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930121.1|1004187_1007367_+	efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_014486063.1|1007363_1008746_+	efflux transporter outer membrane subunit	NA	NA	NA	NA	NA
WP_010930123.1|1008815_1009067_-	GlsB/YeaQ/YmgE family stress response membrane protein	NA	NA	NA	NA	NA
WP_010930124.1|1009212_1009827_-	SCO family protein	NA	NA	NA	NA	NA
WP_019248379.1|1010013_1012128_-	M3 family metallopeptidase	NA	NA	NA	NA	NA
WP_003811948.1|1012203_1013055_-	bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD	NA	A0A249XZQ2	Enterococcus_phage	39.8	2.1e-33
WP_010930126.1|1013051_1013678_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_003817147.1|1013674_1015429_-	PAS domain S-box protein	NA	NA	NA	NA	NA
WP_010930127.1|1015721_1018427_+	pyruvate dehydrogenase (acetyl-transferring), homodimeric type	NA	NA	NA	NA	NA
WP_014905654.1|1018439_1020086_+	dihydrolipoyllysine-residue acetyltransferase	NA	NA	NA	NA	NA
WP_010930129.1|1020098_1021889_+	dihydrolipoyl dehydrogenase	NA	A0A2K5B2C5	Erysipelothrix_phage	25.2	2.4e-39
WP_003817151.1|1022110_1023286_-	FliC/FljB family flagellin	NA	NA	NA	NA	NA
WP_010929584.1|1023328_1024279_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930130.1|1024377_1025118_-	16S rRNA (uracil(1498)-N(3))-methyltransferase	NA	NA	NA	NA	NA
WP_010930131.1|1025312_1027349_+	transketolase	NA	NA	NA	NA	NA
WP_010930132.1|1027366_1028377_+	type I glyceraldehyde-3-phosphate dehydrogenase	NA	NA	NA	NA	NA
WP_010930133.1|1028494_1029688_+	phosphoglycerate kinase	NA	NA	NA	NA	NA
WP_010930134.1|1029717_1030491_-	enoyl-ACP reductase FabI	NA	NA	NA	NA	NA
WP_010930135.1|1030487_1031678_-	acetate kinase	NA	NA	NA	NA	NA
WP_003809454.1|1031703_1032642_-	phosphate acetyltransferase	NA	NA	NA	NA	NA
WP_010930136.1|1032638_1034987_-	DUF3141 domain-containing protein	NA	NA	NA	NA	NA
WP_010930137.1|1035141_1035783_-	glutathione transferase	NA	NA	NA	NA	NA
WP_023853531.1|1035886_1037020_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994624.1|1037112_1037265_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930138.1|1037296_1037845_-	DinB family protein	NA	NA	NA	NA	NA
WP_003819814.1|1037863_1038349_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_010930139.1|1038526_1039465_+	DnaJ domain-containing protein	NA	A0A0P0YMJ9	Yellowstone_lake_phycodnavirus	24.1	5.6e-11
WP_003809467.1|1039467_1039785_+	MerR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247197.1|1039830_1040775_+	AzlC family ABC transporter permease	NA	NA	NA	NA	NA
WP_010930141.1|1042455_1043106_+	molybdopterin adenylyltransferase	NA	NA	NA	NA	NA
WP_003809479.1|1043159_1043495_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930142.1|1043491_1044352_+	M23 family metallopeptidase	NA	A0A292GJG6	Xanthomonas_phage	36.1	2.6e-15
WP_003819817.1|1044368_1044650_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003809486.1|1044723_1044987_-	translation initiation factor IF-1	NA	NA	NA	NA	NA
WP_005012067.1|1045230_1046181_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811933.1|1046479_1047217_-	RNA polymerase sigma factor FliA	NA	NA	NA	NA	NA
WP_010930143.1|1047652_1047976_+	flagellar transcriptional regulator FlhD	NA	NA	NA	NA	NA
WP_003811929.1|1048010_1048571_+	flagellar transcriptional regulator FlhC	NA	NA	NA	NA	NA
WP_003811927.1|1048691_1049567_+	flagellar motor stator protein MotA	NA	NA	NA	NA	NA
WP_003817154.1|1049579_1050527_+	flagellar motor protein MotB	NA	NA	NA	NA	NA
WP_019247393.1|1050628_1050922_+	response regulator	NA	NA	NA	NA	NA
WP_010930144.1|1050948_1053006_+	chemotaxis protein CheA	NA	NA	NA	NA	NA
WP_003811919.1|1053020_1053521_+	chemotaxis protein CheW	NA	NA	NA	NA	NA
WP_010930145.1|1053594_1055301_+	Tar ligand binding domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	41.7	1.4e-12
WP_010930146.1|1056164_1057217_+	chemotaxis response regulator protein-glutamate methylesterase	NA	NA	NA	NA	NA
WP_003811911.1|1057269_1057659_+	chemotaxis response regulator CheY	NA	Q56AR1	Bacillus_thuringiensis_phage	33.3	5.7e-10
WP_003817162.1|1057667_1058300_+	protein phosphatase CheZ	NA	NA	NA	NA	NA
WP_010931363.1|1058399_1059416_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
>prophage 12
NZ_CP010257	Bordetella pertussis strain I496 chromosome, complete genome	4096713	1065400	1125463	4096713	transposase,holin,tRNA,protease	uncultured_Mediterranean_phage(37.5%)	50	NA	NA
WP_015041211.1|1065400_1066828_-|tRNA	tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB	tRNA	NA	NA	NA	NA
WP_010931363.1|1067765_1068782_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003809411.1|1069114_1070050_-	protein translocase subunit SecF	NA	A0A1B1IVP7	uncultured_Mediterranean_phage	35.5	3.0e-41
WP_010930154.1|1070099_1071980_-	protein translocase subunit SecD	NA	NA	NA	NA	NA
WP_003809416.1|1072046_1072391_-	preprotein translocase subunit YajC	NA	A0A1B1IVR5	uncultured_Mediterranean_phage	40.4	1.0e-10
WP_010930155.1|1072535_1073672_-|tRNA	tRNA guanosine(34) transglycosylase Tgt	tRNA	A0A1B1IVQ4	uncultured_Mediterranean_phage	44.4	1.9e-85
WP_023853534.1|1073668_1074742_-|tRNA	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	tRNA	NA	NA	NA	NA
WP_003809423.1|1074899_1076336_+	D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase	NA	NA	NA	NA	NA
WP_010930157.1|1076426_1077068_+	uracil phosphoribosyltransferase	NA	NA	NA	NA	NA
WP_023853536.1|1077403_1078420_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_005012808.1|1080462_1081413_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930160.1|1082615_1084037_-	uroporphyrinogen-III C-methyltransferase	NA	NA	NA	NA	NA
WP_003809431.1|1084300_1085017_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003809432.1|1085101_1085419_+	DUF883 domain-containing protein	NA	NA	NA	NA	NA
WP_003819794.1|1085459_1085873_+|holin	phage holin family protein	holin	NA	NA	NA	NA
WP_010930161.1|1085874_1086234_+	hypothetical protein	NA	NA	NA	NA	NA
WP_023853525.1|1086276_1087821_-	4-hydroxy-3-polyprenylbenzoate decarboxylase	NA	NA	NA	NA	NA
WP_010930163.1|1087904_1088735_+	lytic transglycosylase domain-containing protein	NA	NA	NA	NA	NA
WP_010930164.1|1088769_1089924_-	pyridoxal phosphate-dependent aminotransferase	NA	NA	NA	NA	NA
WP_010930165.1|1089966_1090839_+	hypothetical protein	NA	NA	NA	NA	NA
WP_014486065.1|1090955_1093244_+	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
WP_003809441.1|1094450_1094915_+	barstar family protein	NA	NA	NA	NA	NA
WP_005013747.1|1094941_1095892_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_154698393.1|1095909_1096047_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930167.1|1096259_1097036_-	phosphate ABC transporter ATP-binding protein PstB	NA	G9BWD6	Planktothrix_phage	28.7	4.3e-17
WP_003809638.1|1097080_1097938_-	phosphate ABC transporter permease PstA	NA	NA	NA	NA	NA
WP_010930169.1|1097959_1098976_-	phosphate ABC transporter permease subunit PstC	NA	NA	NA	NA	NA
WP_014486066.1|1099110_1100151_-	phosphate ABC transporter substrate-binding protein PstS	NA	M4QHS4	Cyanophage	40.2	2.1e-51
WP_010930171.1|1100345_1102427_-	polyphosphate kinase 1	NA	NA	NA	NA	NA
WP_010930172.1|1102662_1104156_+	exopolyphosphatase	NA	NA	NA	NA	NA
WP_003809629.1|1104386_1105181_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_003819875.1|1105401_1106760_-	phosphoglucosamine mutase	NA	NA	NA	NA	NA
WP_010930173.1|1106756_1107599_-	dihydropteroate synthase	NA	A0A0B5J4J5	Pandoravirus	32.5	3.2e-26
WP_010930174.1|1107617_1109504_-|protease	ATP-dependent zinc metalloprotease FtsH	protease	M4QMW8	Micromonas_pusilla_virus	41.5	1.4e-109
WP_162096758.1|1109445_1109697_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930175.1|1109741_1110374_-	RlmE family RNA methyltransferase	NA	NA	NA	NA	NA
WP_003809618.1|1110392_1110995_+	YhbY family RNA-binding protein	NA	NA	NA	NA	NA
WP_010929591.1|1111146_1112097_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_161633091.1|1112677_1113385_+	DUF192 domain-containing protein	NA	NA	NA	NA	NA
WP_003812707.1|1113743_1114730_-	homoserine kinase	NA	NA	NA	NA	NA
WP_010930178.1|1114869_1115883_+|tRNA	tRNA dihydrouridine(20/20a) synthase DusA	tRNA	NA	NA	NA	NA
WP_005012067.1|1115879_1116830_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_155120815.1|1116847_1116988_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003812703.1|1116942_1117401_-	CBS domain-containing protein	NA	NA	NA	NA	NA
WP_003812701.1|1117437_1118751_-	YihY family inner membrane protein	NA	NA	NA	NA	NA
WP_010930180.1|1118768_1119140_+	DUF2069 domain-containing protein	NA	NA	NA	NA	NA
WP_019248549.1|1119136_1120600_+	YdiU family protein	NA	A0A075BSJ0	Microcystis_phage	32.5	1.7e-43
WP_010930182.1|1120740_1121469_+	response regulator transcription factor	NA	NA	NA	NA	NA
WP_010930183.1|1121450_1124300_-	EAL domain-containing protein	NA	NA	NA	NA	NA
WP_010929591.1|1124512_1125463_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 13
NZ_CP010257	Bordetella pertussis strain I496 chromosome, complete genome	4096713	1156529	1218701	4096713	transposase,tRNA	Erysipelothrix_phage(33.33%)	50	NA	NA
WP_010930198.1|1156529_1157480_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019248935.1|1157578_1158202_-	serotype 2 fimbrial subunit	NA	NA	NA	NA	NA
WP_010930200.1|1158376_1160659_-	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
WP_010930201.1|1160813_1163510_-	alpha-ketoglutarate dehydrogenase	NA	NA	NA	NA	NA
WP_010930202.1|1163635_1164124_+	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_003813631.1|1166534_1169405_+	2-oxoglutarate dehydrogenase E1 component	NA	NA	NA	NA	NA
WP_010930204.1|1169450_1170665_+	2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase	NA	NA	NA	NA	NA
WP_003813626.1|1170894_1172322_+	dihydrolipoyl dehydrogenase	NA	A0A2K5B2C5	Erysipelothrix_phage	28.1	2.1e-41
WP_023853245.1|1172419_1173511_+	cell division protein ZapE	NA	NA	NA	NA	NA
WP_010930206.1|1173523_1174282_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_003813621.1|1174369_1175272_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|1175268_1176219_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930207.1|1176348_1177332_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003813618.1|1177386_1178109_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930211.1|1179587_1180943_+|tRNA	tryptophan--tRNA ligase	tRNA	NA	NA	NA	NA
WP_010930212.1|1181023_1183399_-	RNA-binding transcriptional accessory protein Tex	NA	NA	NA	NA	NA
WP_010930213.1|1183563_1185639_+	ATP-dependent DNA helicase	NA	A0A127AW80	Bacillus_phage	30.0	2.4e-75
WP_003813594.1|1185700_1186501_-	outer membrane protein assembly factor BamD	NA	NA	NA	NA	NA
WP_010930214.1|1186602_1187565_+	RluA family pseudouridine synthase	NA	NA	NA	NA	NA
WP_019247742.1|1187552_1188308_+	peptidoglycan editing factor PgeF	NA	NA	NA	NA	NA
WP_010930216.1|1188415_1190053_+	class I poly(R)-hydroxyalkanoic acid synthase	NA	NA	NA	NA	NA
WP_003813586.1|1190120_1190858_+	acetoacetyl-CoA reductase	NA	NA	NA	NA	NA
WP_003813585.1|1190960_1191536_+	polyhydroxyalkanoate synthesis repressor PhaR	NA	NA	NA	NA	NA
WP_010930217.1|1191708_1192245_+	iron transporter	NA	NA	NA	NA	NA
WP_003813580.1|1192247_1192592_+	cupredoxin domain-containing protein	NA	NA	NA	NA	NA
WP_010930218.1|1192607_1193453_+	FTR1 family protein	NA	NA	NA	NA	NA
WP_003821443.1|1193491_1194871_+	4Fe-4S binding protein	NA	NA	NA	NA	NA
WP_003813574.1|1194948_1195830_+	PhzF family phenazine biosynthesis protein	NA	NA	NA	NA	NA
WP_010929956.1|1195928_1196879_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811632.1|1196875_1197286_-	VOC family protein	NA	NA	NA	NA	NA
WP_010930219.1|1197393_1198248_-	amidohydrolase family protein	NA	NA	NA	NA	NA
WP_003811636.1|1198240_1199203_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930220.1|1199248_1200373_-	mandelate racemase/muconate lactonizing enzyme family protein	NA	Q6A202	Oenococcus_phage	28.3	1.5e-31
WP_019247966.1|1200478_1201357_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930222.1|1201481_1202261_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930223.1|1202414_1203836_+	MFS transporter	NA	NA	NA	NA	NA
WP_010930224.1|1204270_1205968_+	sodium:solute symporter family protein	NA	NA	NA	NA	NA
WP_010930225.1|1206194_1207136_-	LD-carboxypeptidase	NA	NA	NA	NA	NA
WP_010930226.1|1207462_1208209_+	aldolase	NA	NA	NA	NA	NA
WP_033446252.1|1208216_1209143_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930228.1|1209264_1210182_+	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_003811660.1|1210221_1211175_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003811662.1|1211199_1211778_+	amino acid synthesis family protein	NA	NA	NA	NA	NA
WP_010930229.1|1213451_1214060_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930230.1|1214137_1214491_-	NirD/YgiW/YdeI family stress tolerance protein	NA	NA	NA	NA	NA
WP_010930231.1|1214574_1215564_-	succinylglutamate desuccinylase/aspartoacylase family protein	NA	NA	NA	NA	NA
WP_023852977.1|1215560_1215749_-	hypothetical protein	NA	NA	NA	NA	NA
WP_076879566.1|1215766_1216717_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010927663.1|1216803_1217754_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931070.1|1217750_1218701_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 14
NZ_CP010257	Bordetella pertussis strain I496 chromosome, complete genome	4096713	1269629	1326840	4096713	transposase	Klosneuvirus(16.67%)	49	NA	NA
WP_010931070.1|1269629_1270580_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931041.1|1274326_1274938_-	DUF2239 family protein	NA	NA	NA	NA	NA
WP_003812368.1|1275160_1276621_+	IMP dehydrogenase	NA	A0A1V0SHK8	Klosneuvirus	41.3	1.6e-97
WP_010931040.1|1276717_1278310_+	glutamine-hydrolyzing GMP synthase	NA	A0A1V0SH76	Hokovirus	33.3	1.0e-17
WP_019247974.1|1278663_1278921_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003816876.1|1278922_1280263_+	type II toxin-antitoxin system HipA family toxin	NA	NA	NA	NA	NA
WP_010931038.1|1280358_1281048_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247976.1|1281060_1282491_+	MFS transporter	NA	NA	NA	NA	NA
WP_014905903.1|1284215_1285037_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931036.1|1285047_1286619_+	amidohydrolase	NA	NA	NA	NA	NA
WP_010931035.1|1286647_1287625_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931034.1|1287651_1288455_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	38.2	2.7e-30
WP_010931033.1|1288451_1289246_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_003816890.1|1289253_1290489_+	DUF521 domain-containing protein	NA	NA	NA	NA	NA
WP_010931032.1|1290481_1290916_+	DUF126 domain-containing protein	NA	NA	NA	NA	NA
WP_005013747.1|1291665_1292616_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931031.1|1293237_1294965_-	sulfate permease	NA	NA	NA	NA	NA
WP_010931030.1|1295076_1296435_+	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
WP_023853289.1|1296491_1296710_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|1296727_1297678_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931029.1|1297718_1298789_+	FUSC family protein	NA	NA	NA	NA	NA
WP_010931028.1|1298811_1299690_-	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
WP_010931027.1|1299861_1300833_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010931026.1|1300995_1301838_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931025.1|1301999_1302680_+	cupin domain-containing protein	NA	NA	NA	NA	NA
WP_010931024.1|1302673_1303843_+	FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010931023.1|1303839_1304871_+	alcohol dehydrogenase catalytic domain-containing protein	NA	A0A2K9L339	Tupanvirus	27.8	1.8e-26
WP_010931022.1|1304914_1306156_+	MFS transporter	NA	NA	NA	NA	NA
WP_010931021.1|1306190_1307723_-	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
WP_010931020.1|1307803_1308427_+	FMN-binding negative transcriptional regulator	NA	NA	NA	NA	NA
WP_010931019.1|1308457_1309069_+	LysE family translocator	NA	NA	NA	NA	NA
WP_010931018.1|1309104_1309575_+	DUF1801 domain-containing protein	NA	NA	NA	NA	NA
WP_019248147.1|1310006_1311011_+	M20/M25/M40 family metallo-hydrolase	NA	NA	NA	NA	NA
WP_010931017.1|1311047_1312562_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931016.1|1312565_1313525_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931015.1|1313553_1314357_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931014.1|1314358_1315993_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	31.1	2.9e-15
WP_010931013.1|1316076_1317138_+	LacI family DNA-binding transcriptional regulator	NA	NA	NA	NA	NA
WP_004567322.1|1317336_1317606_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931012.1|1317609_1318134_+	DNA-binding protein	NA	J9Q7G7	Salmonella_phage	32.9	6.5e-09
WP_010929591.1|1318549_1319500_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931011.1|1319496_1320531_-	metal-dependent hydrolase	NA	NA	NA	NA	NA
WP_003816758.1|1320639_1321278_+	DedA family protein	NA	NA	NA	NA	NA
WP_019247724.1|1321572_1321800_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_003820420.1|1321922_1322636_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_005013747.1|1322880_1323831_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931009.1|1323934_1324216_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931008.1|1324330_1325779_-	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
WP_005012808.1|1325889_1326840_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 15
NZ_CP010257	Bordetella pertussis strain I496 chromosome, complete genome	4096713	1712073	1760088	4096713	transposase,tRNA	Moraxella_phage(18.18%)	42	NA	NA
WP_010930522.1|1712073_1713024_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|1713122_1714073_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930804.1|1714171_1716772_-	TRAP transporter fused permease subunit	NA	NA	NA	NA	NA
WP_003818658.1|1716878_1717883_-	TAXI family TRAP transporter solute-binding subunit	NA	NA	NA	NA	NA
WP_010930803.1|1717991_1719332_-	aspartate aminotransferase family protein	NA	A0A1V0SKB7	Klosneuvirus	22.8	8.8e-18
WP_003818661.1|1719372_1720401_-	MurR/RpiR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930802.1|1720596_1721142_+	winged helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010930801.1|1721138_1721699_+	diaminobutyrate acetyltransferase	NA	NA	NA	NA	NA
WP_010930048.1|1721797_1722748_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930523.1|1722785_1723373_+	YigZ family protein	NA	A0A1X9I5T8	Streptococcus_phage	35.8	4.7e-16
WP_003811007.1|1723390_1723774_-	thioredoxin family protein	NA	V9SJ74	Achromobacter_phage	25.8	8.1e-09
WP_003811011.1|1725133_1726426_-	NCS2 family permease	NA	A0A0R6PHV4	Moraxella_phage	36.0	1.7e-66
WP_010930524.1|1726560_1727601_+|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD	tRNA	A0A0R6PI74	Moraxella_phage	51.3	6.1e-91
WP_010929632.1|1727698_1728715_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003811015.1|1728982_1729630_-	glycerol-3-phosphate 1-O-acyltransferase PlsY	NA	NA	NA	NA	NA
WP_010930526.1|1729755_1730514_+	5'/3'-nucleotidase SurE	NA	A0A1B1ITZ2	uncultured_Mediterranean_phage	51.2	1.4e-68
WP_019247478.1|1730498_1731278_+	protein-L-isoaspartate(D-aspartate) O-methyltransferase	NA	A0A1B1IU40	uncultured_Mediterranean_phage	46.9	4.8e-32
WP_003811022.1|1731295_1732180_+	peptidoglycan DD-metalloendopeptidase family protein	NA	A0A292GJG6	Xanthomonas_phage	49.5	4.6e-15
WP_019248494.1|1732176_1732956_+	3'-5' exonuclease	NA	NA	NA	NA	NA
WP_010930528.1|1733060_1733660_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930529.1|1733948_1734701_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003816525.1|1734819_1736220_+	23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD	NA	A0A2K5B251	Erysipelothrix_phage	26.5	7.3e-31
WP_003816523.1|1736243_1736642_-	Cu(I)-responsive transcriptional regulator	NA	NA	NA	NA	NA
WP_003811035.1|1736817_1737018_+	heavy-metal-associated domain-containing protein	NA	NA	NA	NA	NA
WP_010930530.1|1737156_1737885_+	redoxin family protein	NA	A0A1D8KSL1	Synechococcus_phage	56.8	9.6e-43
WP_003816520.1|1738018_1739434_+	dihydrolipoyl dehydrogenase	NA	NA	NA	NA	NA
WP_003816518.1|1739437_1740301_-	23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ	NA	NA	NA	NA	NA
WP_004568486.1|1740313_1741063_-	glycerophosphodiester phosphodiesterase	NA	A0A2H4PGQ5	Escherichia_phage	27.8	1.5e-14
WP_019247881.1|1741245_1743261_+	SurA N-terminal domain-containing protein	NA	NA	NA	NA	NA
WP_019247882.1|1743242_1743911_-	arylesterase	NA	NA	NA	NA	NA
WP_005012067.1|1744685_1745636_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003813572.1|1745784_1746123_-	BON domain-containing protein	NA	NA	NA	NA	NA
WP_003813570.1|1746180_1746342_-	DUF1328 domain-containing protein	NA	NA	NA	NA	NA
WP_003813568.1|1746373_1746574_-	CsbD family protein	NA	NA	NA	NA	NA
WP_010930533.1|1746839_1749413_-	cyanophycin synthetase	NA	NA	NA	NA	NA
WP_019247811.1|1749483_1752033_-	cyanophycin synthetase	NA	NA	NA	NA	NA
WP_010930535.1|1754583_1755072_+	DUF1854 domain-containing protein	NA	NA	NA	NA	NA
WP_029443743.1|1755163_1756315_-	N-acetyltransferase	NA	NA	NA	NA	NA
WP_004566336.1|1756368_1757190_+	ferritin-like domain-containing protein	NA	NA	NA	NA	NA
WP_010930537.1|1757228_1758458_+	lytic murein transglycosylase	NA	NA	NA	NA	NA
WP_004566334.1|1758586_1759027_+	DUF937 domain-containing protein	NA	NA	NA	NA	NA
WP_005012808.1|1759137_1760088_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 16
NZ_CP010257	Bordetella pertussis strain I496 chromosome, complete genome	4096713	1896647	1966299	4096713	transposase,tRNA	Staphylococcus_phage(16.67%)	55	NA	NA
WP_003818515.1|1896647_1899305_-|tRNA	leucine--tRNA ligase	tRNA	A0A2H4PQS0	Staphylococcus_phage	39.0	3.3e-173
WP_010930709.1|1899382_1900585_-	MFS transporter	NA	NA	NA	NA	NA
WP_003810260.1|1900581_1901094_-	MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247822.1|1901216_1901654_-	HU family DNA-binding protein	NA	NA	NA	NA	NA
WP_010931070.1|1901930_1902881_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_062826579.1|1902979_1903930_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930710.1|1904183_1905989_+	STAS domain-containing protein	NA	A0A2H4J153	uncultured_Caudovirales_phage	27.5	2.2e-19
WP_010930711.1|1906102_1906270_-	50S ribosomal protein L33	NA	NA	NA	NA	NA
WP_003810297.1|1906333_1906570_-	50S ribosomal protein L28	NA	NA	NA	NA	NA
WP_010930712.1|1906938_1908138_-	multidrug effflux MFS transporter	NA	NA	NA	NA	NA
WP_005012067.1|1909653_1910604_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003818523.1|1911055_1912057_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003810306.1|1912229_1913087_+	proline/glycine betaine ABC transporter permease	NA	NA	NA	NA	NA
WP_003810308.1|1913083_1914346_+	glycine betaine/L-proline ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	36.6	6.8e-28
WP_003818524.1|1914446_1914821_+	tautomerase family protein	NA	NA	NA	NA	NA
WP_010930713.1|1914893_1916081_+	acetyl-CoA C-acyltransferase family protein	NA	NA	NA	NA	NA
WP_010930714.1|1916165_1916936_+	spermidine synthase	NA	NA	NA	NA	NA
WP_010930715.1|1917049_1917814_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930716.1|1917764_1919066_+	malonyl-CoA decarboxylase family protein	NA	NA	NA	NA	NA
WP_010930717.1|1919062_1919869_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003818532.1|1921613_1922585_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003818533.1|1922741_1923254_+	superoxide dismutase family protein	NA	Q9MC02	Salmonella_phage	52.3	1.8e-43
WP_010930718.1|1923412_1924387_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930719.1|1925387_1926182_+	ABC transporter ATP-binding protein	NA	A0A1V0SE00	Indivirus	25.7	5.1e-05
WP_003818535.1|1926207_1927014_-	TOBE domain-containing protein	NA	NA	NA	NA	NA
WP_003810329.1|1927124_1927715_+	DUF4136 domain-containing protein	NA	NA	NA	NA	NA
WP_010930720.1|1927725_1928904_+	patatin-like phospholipase family protein	NA	NA	NA	NA	NA
WP_010930721.1|1929006_1929381_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_019248531.1|1929633_1930965_+	efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
WP_019247651.1|1931031_1934262_+	multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_003810344.1|1935752_1936499_+	pyridoxine 5'-phosphate synthase	NA	NA	NA	NA	NA
WP_010930724.1|1936583_1937045_+	holo-ACP synthase	NA	NA	NA	NA	NA
WP_010930725.1|1937082_1938141_+	beta-N-acetylhexosaminidase	NA	NA	NA	NA	NA
WP_010930726.1|1938103_1939933_+	excinuclease ABC subunit UvrC	NA	NA	NA	NA	NA
WP_003810356.1|1939972_1940545_+	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	NA	NA	NA	NA	NA
WP_010930727.1|1941969_1942791_-	NADPH-dependent 7-cyano-7-deazaguanine reductase QueF	NA	A0A2I7SAX1	Vibrio_phage	37.6	4.1e-42
WP_010930728.1|1943109_1944432_+	isocitrate lyase	NA	NA	NA	NA	NA
WP_010930729.1|1944791_1945427_+	membrane protein	NA	NA	NA	NA	NA
WP_010930730.1|1945386_1946337_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930731.1|1947207_1948080_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010930732.1|1948157_1949297_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930733.1|1949655_1950912_+	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA	NA
WP_003816691.1|1950917_1951445_+	aromatic-ring-hydroxylating dioxygenase subunit beta	NA	NA	NA	NA	NA
WP_003816690.1|1951449_1952268_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_062810228.1|1952267_1952990_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930735.1|1953011_1953326_+	2Fe-2S iron-sulfur cluster binding domain-containing protein	NA	NA	NA	NA	NA
WP_010930736.1|1953343_1954492_+	CoA transferase	NA	NA	NA	NA	NA
WP_010930737.1|1954522_1955398_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003816680.1|1955394_1956714_-	AMP-binding protein	NA	NA	NA	NA	NA
WP_014486081.1|1956786_1957983_-	acetyl-CoA acetyltransferase	NA	NA	NA	NA	NA
WP_010930739.1|1957993_1959481_-	hydroxymethylglutaryl-CoA synthase family protein	NA	NA	NA	NA	NA
WP_010930740.1|1962075_1962975_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_023852887.1|1963112_1964078_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_005015810.1|1964176_1965127_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|1965348_1966299_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 17
NZ_CP010257	Bordetella pertussis strain I496 chromosome, complete genome	4096713	1977795	2026142	4096713	transposase	Erysipelothrix_phage(16.67%)	45	NA	NA
WP_005013747.1|1977795_1978746_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812172.1|1979883_1980180_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247707.1|1980354_1981707_+	glutathione-disulfide reductase	NA	A0A2K5B2C5	Erysipelothrix_phage	27.6	2.9e-45
WP_010930153.1|1981849_1982866_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010930748.1|1984845_1985859_-	pyridoxamine 5'-phosphate oxidase family protein	NA	NA	NA	NA	NA
WP_010930749.1|1985945_1986851_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003812179.1|1987007_1987352_+	exported protein	NA	NA	NA	NA	NA
WP_010930750.1|1987509_1987968_+	(2Fe-2S)-binding protein	NA	NA	NA	NA	NA
WP_010930751.1|1987981_1990198_+	xanthine dehydrogenase family protein molybdopterin-binding subunit	NA	NA	NA	NA	NA
WP_003812183.1|1990194_1991256_+	XdhC family protein	NA	NA	NA	NA	NA
WP_010930752.1|1991284_1992259_+	AraC family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930753.1|1992210_1993029_-	hypothetical protein	NA	A0A1B1INV8	uncultured_Mediterranean_phage	28.8	2.3e-16
WP_003812191.1|1993041_1993650_-	LON peptidase substrate-binding domain-containing protein	NA	NA	NA	NA	NA
WP_010930754.1|1993824_1994220_+	VOC family protein	NA	NA	NA	NA	NA
WP_010930755.1|1994238_1995678_+	MFS transporter	NA	A0A0M3UL24	Mycobacterium_phage	37.4	7.4e-55
WP_003812199.1|1995706_1996054_+	GFA family protein	NA	NA	NA	NA	NA
WP_010929577.1|1996072_1997023_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|1997675_1998626_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023997035.1|1998709_2000527_+	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	27.4	2.3e-37
WP_019247659.1|2000600_2001248_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930758.1|2001260_2002190_-	ZIP family metal transporter	NA	NA	NA	NA	NA
WP_014905663.1|2002359_2002824_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003816977.1|2003071_2003752_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003816975.1|2003800_2005492_+	STAS domain-containing protein	NA	A0A2H4J153	uncultured_Caudovirales_phage	27.3	5.0e-42
WP_010930760.1|2005507_2006059_-	SRPBCC family protein	NA	NA	NA	NA	NA
WP_003816971.1|2006055_2006427_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010930761.1|2006539_2007376_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_029443822.1|2007386_2007911_-	DUF302 domain-containing protein	NA	NA	NA	NA	NA
WP_003812228.1|2008008_2008188_+	DUF3008 family protein	NA	NA	NA	NA	NA
WP_010930763.1|2008317_2009292_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003816964.1|2009422_2009779_+	DUF1428 domain-containing protein	NA	NA	NA	NA	NA
WP_010930764.1|2009768_2010644_-	PhzF family phenazine biosynthesis protein	NA	NA	NA	NA	NA
WP_010930765.1|2010742_2011627_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930766.1|2011648_2012944_-	DUF445 domain-containing protein	NA	NA	NA	NA	NA
WP_003816959.1|2013892_2014543_+	NAD(P)H-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010930767.1|2014630_2016151_-	aldehyde dehydrogenase	NA	NA	NA	NA	NA
WP_010930768.1|2016408_2018274_+	sigma-54-dependent Fis family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|2018270_2019221_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_162268681.1|2019238_2019379_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930769.1|2020193_2020553_-	CidA/LrgA family protein	NA	NA	NA	NA	NA
WP_010930770.1|2020540_2021977_-	dethiobiotin synthase	NA	NA	NA	NA	NA
WP_010930771.1|2021973_2022627_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_010930772.1|2022623_2023817_-	8-amino-7-oxononanoate synthase	NA	NA	NA	NA	NA
WP_010930773.1|2023920_2025195_+	adenosylmethionine--8-amino-7-oxononanoate transaminase	NA	A0A1V0SKB7	Klosneuvirus	28.9	9.6e-14
WP_005012067.1|2025191_2026142_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 18
NZ_CP010257	Bordetella pertussis strain I496 chromosome, complete genome	4096713	2037346	2078037	4096713	transposase,tRNA,protease	Klosneuvirus(25.0%)	37	NA	NA
WP_005013747.1|2037346_2038297_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|2038395_2039346_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_047122784.1|2039305_2039719_-	transcriptional regulator	NA	A0A222YXG1	Escherichia_phage	59.0	3.8e-36
WP_003816708.1|2040003_2040303_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930783.1|2040712_2042995_-	RNA polymerase sigma factor RpoD	NA	A0A2I7SAT0	Vibrio_phage	30.1	3.2e-36
WP_124740709.1|2043460_2043655_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930784.1|2043680_2045711_-	DNA primase	NA	A0A0K1LMQ9	Caulobacter_phage	41.9	1.0e-65
WP_006218592.1|2045730_2045943_-	30S ribosomal protein S21	NA	NA	NA	NA	NA
WP_003810720.1|2046220_2046760_-	phosphoribosyltransferase	NA	NA	NA	NA	NA
WP_023852902.1|2046873_2048169_-	adenylosuccinate synthase	NA	A0A160ER07	Powai_lake_megavirus	33.5	3.0e-63
WP_010930786.1|2048245_2049403_-	ATP phosphoribosyltransferase regulatory subunit	NA	NA	NA	NA	NA
WP_010930787.1|2049586_2050486_-|protease	protease modulator HflC	protease	NA	NA	NA	NA
WP_010930788.1|2050504_2051809_-|protease	FtsH protease activity modulator HflK	protease	NA	NA	NA	NA
WP_010930789.1|2051774_2052881_-	GTPase HflX	NA	NA	NA	NA	NA
WP_003810707.1|2052968_2053205_-	RNA chaperone Hfq	NA	NA	NA	NA	NA
WP_010930790.1|2053343_2054414_-	histidinol-phosphate transaminase	NA	A0A1X6WGT4	Pacmanvirus	25.7	2.5e-15
WP_003810703.1|2054417_2055773_-	ribosome biogenesis GTPase Der	NA	NA	NA	NA	NA
WP_003810701.1|2055799_2056960_-	outer membrane protein assembly factor BamB	NA	NA	NA	NA	NA
WP_010930791.1|2056962_2057601_-	tetratricopeptide repeat protein	NA	NA	NA	NA	NA
WP_023995843.1|2057602_2058889_-|tRNA	histidine--tRNA ligase	tRNA	NA	NA	NA	NA
WP_010930793.1|2058947_2060243_-	flavodoxin-dependent (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase	NA	NA	NA	NA	NA
WP_003810693.1|2060249_2060756_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_004568542.1|2060752_2061901_-	23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN	NA	NA	NA	NA	NA
WP_003810689.1|2061928_2062354_-	nucleoside-diphosphate kinase	NA	D2E8E1	Anguillid_herpesvirus	43.2	2.1e-21
WP_010930794.1|2062676_2065559_+|tRNA	valine--tRNA ligase	tRNA	A0A1V0SK04	Klosneuvirus	37.1	3.7e-138
WP_023852900.1|2065651_2066407_-	MipA/OmpV family protein	NA	NA	NA	NA	NA
WP_010930796.1|2067172_2068522_+	two-component sensor histidine kinase	NA	NA	NA	NA	NA
WP_076879566.1|2068620_2069571_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930048.1|2069669_2070620_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930594.1|2070693_2071167_+	RidA family protein	NA	NA	NA	NA	NA
WP_010930593.1|2071192_2072401_+	aminotransferase class V-fold PLP-dependent enzyme	NA	NA	NA	NA	NA
WP_003816734.1|2072397_2073171_-|tRNA	tRNA (guanosine(37)-N1)-methyltransferase TrmD	tRNA	NA	NA	NA	NA
WP_014905757.1|2073170_2073794_-	ribosome maturation factor RimM	NA	NA	NA	NA	NA
WP_010926757.1|2073959_2074220_-	30S ribosomal protein S16	NA	NA	NA	NA	NA
WP_010930591.1|2074523_2075105_+	hypothetical protein	NA	NA	NA	NA	NA
WP_004568544.1|2075171_2075426_-	sulfurtransferase TusA family protein	NA	NA	NA	NA	NA
WP_010930590.1|2075412_2078037_-|tRNA	alanine--tRNA ligase	tRNA	A0A1V0SK38	Klosneuvirus	39.4	1.7e-81
>prophage 19
NZ_CP010257	Bordetella pertussis strain I496 chromosome, complete genome	4096713	2154043	2246014	4096713	transposase,tRNA	Moraxella_phage(25.0%)	60	NA	NA
WP_010929632.1|2154043_2155060_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010930633.1|2155453_2156719_-	aspartate kinase	NA	NA	NA	NA	NA
WP_010930632.1|2156818_2157784_-|tRNA	tRNA lysidine(34) synthetase TilS	tRNA	NA	NA	NA	NA
WP_023997643.1|2157913_2158864_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003810007.1|2158962_2159928_-	acetyl-CoA carboxylase carboxyltransferase subunit alpha	NA	NA	NA	NA	NA
WP_003820119.1|2159964_2160609_-	DNA-3-methyladenine glycosylase 2 family protein	NA	NA	NA	NA	NA
WP_010930630.1|2160628_2162089_-|tRNA	cysteine--tRNA ligase	tRNA	A0A2K9L6B7	Tupanvirus	27.9	2.5e-34
WP_010930629.1|2162328_2163012_+	tetratricopeptide repeat protein	NA	NA	NA	NA	NA
WP_003809999.1|2163140_2163650_+	peptidylprolyl isomerase	NA	NA	NA	NA	NA
WP_019247344.1|2163642_2164419_+	UDP-2,3-diacylglucosamine diphosphatase	NA	NA	NA	NA	NA
WP_010930627.1|2164626_2165490_-	undecaprenyl-diphosphate phosphatase	NA	NA	NA	NA	NA
WP_003809992.1|2165514_2167101_-	TerC family protein	NA	A0A0R6PEZ3	Moraxella_phage	42.0	1.9e-35
WP_010930626.1|2167227_2168010_-	inositol monophosphatase	NA	NA	NA	NA	NA
WP_010930625.1|2168117_2168894_+	RNA methyltransferase	NA	NA	NA	NA	NA
WP_010930624.1|2169111_2170104_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930623.1|2170265_2171024_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003809983.1|2171037_2171871_-	mechanosensitive ion channel	NA	NA	NA	NA	NA
WP_010930622.1|2173030_2174062_+	C45 family peptidase	NA	NA	NA	NA	NA
WP_010930621.1|2174075_2177699_-	hydantoinase B/oxoprolinase family protein	NA	NA	NA	NA	NA
WP_010930620.1|2177777_2178290_-	winged helix DNA-binding protein	NA	NA	NA	NA	NA
WP_019247163.1|2179464_2180166_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930618.1|2180186_2181152_+	TRAP transporter substrate-binding protein DctP	NA	NA	NA	NA	NA
WP_010930617.1|2181165_2181657_+	TRAP transporter small permease	NA	NA	NA	NA	NA
WP_010930616.1|2183213_2184188_+	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930615.1|2184194_2184695_+	TRAP transporter small permease	NA	NA	NA	NA	NA
WP_010930614.1|2186012_2187767_-	filamentous hemagglutinin transporter protein FhaC	NA	NA	NA	NA	NA
WP_019247160.1|2187759_2188890_-	type 1 fimbrial protein	NA	NA	NA	NA	NA
WP_010930612.1|2188870_2191492_-	fimbrial biogenesis outer membrane usher protein	NA	NA	NA	NA	NA
WP_010930611.1|2191554_2192289_-	molecular chaperone FimB	NA	NA	NA	NA	NA
WP_010930610.1|2193051_2203824_-	filamentous hemagglutinin/adhesin	NA	A0A0R6PJK4	Moraxella_phage	32.5	3.6e-29
WP_010930609.1|2204250_2204880_+	virulence factors two-component system response regulator BvgA	NA	NA	NA	NA	NA
WP_014486076.1|2204888_2208605_+	virulence factors two-component system sensor histidine kinase BvgS	NA	A0A1V0SGX0	Hokovirus	32.0	4.2e-33
WP_003816497.1|2208648_2209524_-	EAL domain-containing protein	NA	NA	NA	NA	NA
WP_010930607.1|2209657_2210452_-	putative hydro-lyase	NA	NA	NA	NA	NA
WP_010930606.1|2210509_2211859_-	amidase	NA	NA	NA	NA	NA
WP_005012067.1|2213875_2214826_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|2216093_2217044_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811701.1|2217160_2217880_+	FadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930605.1|2218052_2219039_+	DctP family TRAP transporter solute-binding subunit	NA	NA	NA	NA	NA
WP_010930604.1|2219039_2219522_+	TRAP transporter small permease	NA	NA	NA	NA	NA
WP_003811706.1|2219525_2220809_+	TRAP transporter large permease	NA	NA	NA	NA	NA
WP_003811709.1|2220805_2221744_+	citrate lyase subunit beta	NA	NA	NA	NA	NA
WP_010930603.1|2221740_2223450_+	thiamine pyrophosphate-binding protein	NA	A0A0P0YLY7	Yellowstone_lake_phycodnavirus	27.3	5.9e-35
WP_010930602.1|2223459_2224707_+	Zn-dependent hydrolase	NA	NA	NA	NA	NA
WP_003811716.1|2226317_2227607_-	Glu/Leu/Phe/Val dehydrogenase	NA	NA	NA	NA	NA
WP_020699606.1|2228744_2229503_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	37.9	6.7e-31
WP_010930601.1|2230179_2230923_-	glutamine ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930600.1|2230997_2231738_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930599.1|2231933_2232770_-	ankyrin repeat domain-containing protein	NA	NA	NA	NA	NA
WP_010930598.1|2232820_2233591_-	TatD family hydrolase	NA	NA	NA	NA	NA
WP_010930597.1|2233640_2234693_-	DNA polymerase III subunit delta'	NA	NA	NA	NA	NA
WP_003811733.1|2234689_2235316_-	dTMP kinase	NA	A0A1L2BX49	Bacteriophage	35.1	1.6e-22
WP_010930596.1|2235312_2236347_-	endolytic transglycosylase MltG	NA	NA	NA	NA	NA
WP_010930595.1|2236525_2237542_+	folate-binding protein YgfZ	NA	NA	NA	NA	NA
WP_005012067.1|2237640_2238591_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930797.1|2241331_2242621_-	D-amino acid dehydrogenase	NA	NA	NA	NA	NA
WP_010930798.1|2242739_2243177_-	Rrf2 family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930799.1|2243220_2244429_-	NO-inducible flavohemoprotein	NA	NA	NA	NA	NA
WP_003810867.1|2244575_2245040_+	GatB/YqeY domain-containing protein	NA	A0A0K2FLI9	Brevibacillus_phage	32.4	3.9e-05
WP_014905945.1|2245063_2246014_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 20
NZ_CP010257	Bordetella pertussis strain I496 chromosome, complete genome	4096713	2257394	2319935	4096713	transposase,tRNA	Pandoravirus(20.0%)	54	NA	NA
WP_004568494.1|2257394_2257901_-|tRNA	tRNA adenosine(34) deaminase TadA	tRNA	S4VYT2	Pandoravirus	38.4	3.4e-07
WP_010930513.1|2257893_2258742_-	haloacid dehalogenase-like hydrolase	NA	NA	NA	NA	NA
WP_019247780.1|2258839_2259382_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|2259425_2260376_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930511.1|2260531_2260858_-	cation:proton antiporter	NA	NA	NA	NA	NA
WP_003810975.1|2260854_2261139_-	K+/H+ antiporter subunit F	NA	NA	NA	NA	NA
WP_010930510.1|2261135_2261615_-	Na+/H+ antiporter subunit E	NA	NA	NA	NA	NA
WP_004568496.1|2261611_2263240_-	monovalent cation/H+ antiporter subunit D	NA	NA	NA	NA	NA
WP_003810969.1|2263236_2263581_-	Na+/H+ antiporter subunit C	NA	NA	NA	NA	NA
WP_010930509.1|2263580_2266514_-	monovalent cation/H+ antiporter subunit A	NA	NA	NA	NA	NA
WP_010929588.1|2267672_2268623_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811452.1|2268721_2269018_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930508.1|2269124_2270042_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930507.1|2270046_2270760_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930506.1|2270773_2271745_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019249653.1|2273464_2273845_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010930504.1|2273848_2275036_+	MFS transporter	NA	NA	NA	NA	NA
WP_170954298.1|2275459_2276197_+	arsenical resistance protein ArsH	NA	A0A2H4J5V6	uncultured_Caudovirales_phage	68.2	1.3e-87
WP_005013747.1|2276490_2277441_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019249376.1|2277437_2277866_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003811538.1|2279267_2280230_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930502.1|2280345_2281299_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930501.1|2281308_2282301_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930500.1|2282352_2283108_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930499.1|2283172_2283862_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930498.1|2284083_2285034_+	fumarylacetoacetate hydrolase family protein	NA	NA	NA	NA	NA
WP_010930497.1|2285064_2286261_+	alpha-hydroxy-acid oxidizing protein	NA	NA	NA	NA	NA
WP_019247910.1|2286251_2287031_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_019247909.1|2287143_2288070_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930494.1|2288155_2289100_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930493.1|2289077_2289947_-	TauD/TfdA family dioxygenase	NA	NA	NA	NA	NA
WP_010930492.1|2290190_2290814_+	glutathione S-transferase family protein	NA	NA	NA	NA	NA
WP_019247905.1|2291128_2291428_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_023995112.1|2291441_2294516_-	autotransporter SphB2	NA	NA	NA	NA	NA
WP_010930489.1|2294645_2295320_+	response regulator transcription factor	NA	NA	NA	NA	NA
WP_019247865.1|2295312_2297127_+	sensor histidine kinase	NA	NA	NA	NA	NA
WP_010930487.1|2297180_2298128_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|2298232_2299183_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023852967.1|2299735_2301361_-	arylsulfatase	NA	A0A2P0VMN7	Tetraselmis_virus	52.2	2.0e-149
WP_010930475.1|2301410_2302445_-	haloacid dehalogenase-like hydrolase	NA	NA	NA	NA	NA
WP_010930476.1|2302447_2303794_-	BatD family protein	NA	NA	NA	NA	NA
WP_010930477.1|2303790_2305305_-	VWA domain-containing protein	NA	NA	NA	NA	NA
WP_010930478.1|2305295_2306306_-	VWA domain-containing protein	NA	NA	NA	NA	NA
WP_010930479.1|2306779_2307721_-	DUF58 domain-containing protein	NA	NA	NA	NA	NA
WP_010930480.1|2307729_2308698_-	AAA family ATPase	NA	NA	NA	NA	NA
WP_010930481.1|2310237_2311206_+	transporter	NA	NA	NA	NA	NA
WP_010930482.1|2311383_2312373_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010926609.1|2312419_2313178_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930483.1|2313367_2314105_+	TerC family protein	NA	A0A0S4KZH7	Pseudomonas_phage	46.6	4.1e-41
WP_005012808.1|2314203_2315154_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003816696.1|2315338_2316121_+	ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	25.8	2.0e-09
WP_003810743.1|2316114_2316816_+	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
WP_003810741.1|2317055_2317658_+	TetR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005013747.1|2318984_2319935_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 21
NZ_CP010257	Bordetella pertussis strain I496 chromosome, complete genome	4096713	2359212	2412327	4096713	transposase	Ectocarpus_siliculosus_virus(12.5%)	48	NA	NA
WP_005012067.1|2359212_2360163_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930453.1|2360182_2361088_-	pirin family protein	NA	NA	NA	NA	NA
WP_003811176.1|2361165_2361864_-	pirin family protein	NA	NA	NA	NA	NA
WP_010930452.1|2362023_2362968_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930451.1|2362977_2364465_-	nitrogen regulation protein NR(I)	NA	NA	NA	NA	NA
WP_003811167.1|2364464_2365532_-	PAS domain-containing protein	NA	Q8QKV7	Ectocarpus_siliculosus_virus	23.5	1.1e-05
WP_003811164.1|2365595_2367008_-	type I glutamate--ammonia ligase	NA	NA	NA	NA	NA
WP_010930450.1|2367193_2368414_-	oxygen-independent coproporphyrinogen III oxidase-like protein	NA	NA	NA	NA	NA
WP_005012808.1|2368435_2369386_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930449.1|2369484_2370126_-	RdgB/HAM1 family non-canonical purine NTP pyrophosphatase	NA	NA	NA	NA	NA
WP_010930448.1|2370252_2372055_+	EAL domain-containing protein	NA	NA	NA	NA	NA
WP_003811152.1|2373706_2374612_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930446.1|2374793_2376170_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_003811149.1|2376336_2377077_-	ribonuclease PH	NA	NA	NA	NA	NA
WP_003811148.1|2377213_2378140_+	YicC family protein	NA	NA	NA	NA	NA
WP_010930445.1|2378412_2378568_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010926696.1|2378705_2378990_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003811138.1|2379048_2380539_-	AMP nucleosidase	NA	NA	NA	NA	NA
WP_003811137.1|2380783_2381383_+	C40 family peptidase	NA	A0A0A8WF62	Clostridium_phage	41.6	1.4e-20
WP_003811135.1|2381387_2382158_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930444.1|2382395_2383109_+	c-type cytochrome	NA	NA	NA	NA	NA
WP_010930443.1|2383105_2384023_+	c-type cytochrome	NA	NA	NA	NA	NA
WP_010930442.1|2384158_2384791_+	guanylate kinase	NA	A0A218KC48	Bacillus_phage	33.9	2.4e-13
WP_010930441.1|2384832_2385036_+	DNA-directed RNA polymerase subunit omega	NA	NA	NA	NA	NA
WP_010930440.1|2385060_2387340_+	bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase	NA	A0A1B1IUF0	uncultured_Mediterranean_phage	32.1	5.9e-06
WP_003811113.1|2387352_2388081_-	glutamine ABC transporter ATP-binding protein GlnQ	NA	G9BWD6	Planktothrix_phage	39.3	3.3e-35
WP_003811112.1|2388077_2388737_-	glutamine ABC transporter permease GlnP	NA	NA	NA	NA	NA
WP_010930439.1|2388805_2389558_-	glutamine ABC transporter substrate-binding protein GlnH	NA	NA	NA	NA	NA
WP_005012067.1|2389739_2390690_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_033446216.1|2391582_2392488_+	4-hydroxy-tetrahydrodipicolinate synthase	NA	NA	NA	NA	NA
WP_010930437.1|2392499_2393627_+	outer membrane protein assembly factor BamC	NA	NA	NA	NA	NA
WP_010930436.1|2393715_2394330_-	serotype 3 fimbrial subunit	NA	NA	NA	NA	NA
WP_010930435.1|2394988_2396176_-	cupin domain-containing protein	NA	NA	NA	NA	NA
WP_033446228.1|2396172_2398770_-	DNA mismatch repair protein MutS	NA	A0A1V0SDQ0	Indivirus	22.6	1.5e-21
WP_010930433.1|2399024_2399240_+	dodecin domain-containing protein	NA	NA	NA	NA	NA
WP_010930432.1|2399695_2400250_-	NAD(P)H-dependent oxidoreductase	NA	A0A2P0ZL82	Lactobacillus_phage	32.0	1.7e-15
WP_010930431.1|2400517_2401078_+	membrane protein	NA	NA	NA	NA	NA
WP_023853587.1|2401189_2402494_+	imelysin	NA	NA	NA	NA	NA
WP_019247498.1|2402490_2404002_+	c-type cytochrome	NA	NA	NA	NA	NA
WP_019248041.1|2404107_2405109_+	imelysin family protein	NA	NA	NA	NA	NA
WP_019249265.1|2405098_2406211_+	DUF1513 domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|2406309_2407260_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010928449.1|2407256_2407883_-	threonylcarbamoyl-AMP synthase	NA	NA	NA	NA	NA
WP_010930427.1|2407942_2408794_+	neutral zinc metallopeptidase	NA	A0A1I9SA48	Rhodococcus_phage	35.3	7.0e-37
WP_010930426.1|2408897_2409497_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930425.1|2409493_2410258_+	hypothetical protein	NA	NA	NA	NA	NA
WP_023852714.1|2410327_2411278_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|2411376_2412327_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 22
NZ_CP010257	Bordetella pertussis strain I496 chromosome, complete genome	4096713	2466263	2525044	4096713	transposase,tRNA	Planktothrix_phage(28.57%)	50	NA	NA
WP_003812608.1|2466263_2468213_-|tRNA	threonine--tRNA ligase	tRNA	A0A2K9L297	Tupanvirus	36.0	4.1e-125
WP_019248759.1|2468600_2469377_+	response regulator transcription factor	NA	NA	NA	NA	NA
WP_003812612.1|2469382_2469775_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|2470196_2471147_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930389.1|2471143_2472241_-	sensor domain-containing diguanylate cyclase	NA	A0A127AWB9	Bacillus_phage	37.3	3.5e-20
WP_076879548.1|2472272_2473223_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814009.1|2475004_2476246_-	MFS transporter	NA	NA	NA	NA	NA
WP_003814010.1|2476257_2477031_-	peroxide stress protein YaaA	NA	NA	NA	NA	NA
WP_005012067.1|2477057_2478008_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930388.1|2478487_2479144_-	phosphoribosylanthranilate isomerase	NA	NA	NA	NA	NA
WP_010930387.1|2479158_2480826_-	TRAP transporter large permease subunit	NA	NA	NA	NA	NA
WP_010930386.1|2480828_2481458_-	TRAP transporter small permease subunit	NA	NA	NA	NA	NA
WP_014486072.1|2481669_2482764_-	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930384.1|2482908_2483721_-|tRNA	tRNA pseudouridine(38-40) synthase TruA	tRNA	NA	NA	NA	NA
WP_023853502.1|2483724_2485428_-	FimV N-terminal domain protein	NA	NA	NA	NA	NA
WP_010930382.1|2485478_2486609_-	aspartate-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
WP_010930381.1|2486795_2487872_-	3-isopropylmalate dehydrogenase	NA	NA	NA	NA	NA
WP_010930380.1|2487953_2488604_-	3-isopropylmalate dehydratase small subunit	NA	NA	NA	NA	NA
WP_010930379.1|2488618_2490022_-	3-isopropylmalate dehydratase large subunit	NA	NA	NA	NA	NA
WP_004567445.1|2490305_2491124_-	substrate-binding domain-containing protein	NA	NA	NA	NA	NA
WP_010930378.1|2491120_2491825_-	phosphate ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.0	2.6e-13
WP_010930377.1|2492724_2493840_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_004567447.1|2493873_2494248_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930376.1|2494270_2495428_-	formate dehydrogenase subunit gamma	NA	NA	NA	NA	NA
WP_003812666.1|2495440_2495674_-	lipoprotein	NA	NA	NA	NA	NA
WP_019247523.1|2496308_2499278_-	formate dehydrogenase subunit alpha	NA	NA	NA	NA	NA
WP_023853518.1|2499292_2499502_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019248667.1|2499653_2500283_-	molecular chaperone TorD family protein	NA	NA	NA	NA	NA
WP_010930373.1|2500279_2502370_-	4Fe-4S binding protein	NA	NA	NA	NA	NA
WP_010930372.1|2502393_2503074_-	DUF3306 domain-containing protein	NA	NA	NA	NA	NA
WP_003820494.1|2503070_2503631_-	DUF3305 domain-containing protein	NA	NA	NA	NA	NA
WP_004567450.1|2503637_2504735_-	iron-sulfur cluster carrier protein ApbC	NA	NA	NA	NA	NA
WP_010930371.1|2504887_2505481_+	molybdenum cofactor guanylyltransferase MobA	NA	NA	NA	NA	NA
WP_010930370.1|2505477_2506770_+	molybdopterin molybdotransferase MoeA	NA	NA	NA	NA	NA
WP_003812685.1|2506783_2507326_+	molybdopterin-guanine dinucleotide biosynthesis protein B	NA	NA	NA	NA	NA
WP_010930369.1|2507335_2508172_-	M48 family metallopeptidase	NA	NA	NA	NA	NA
WP_003820487.1|2508205_2509267_-	chorismate synthase	NA	A0A291AU41	Pandoravirus	42.8	2.9e-80
WP_019247210.1|2509308_2510361_-	EAL domain-containing protein	NA	NA	NA	NA	NA
WP_019247209.1|2510376_2510679_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012808.1|2510820_2511771_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_162268680.1|2511788_2511953_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930368.1|2511949_2513644_+	iron ABC transporter permease	NA	NA	NA	NA	NA
WP_003809599.1|2513640_2514726_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	37.7	6.4e-27
WP_010930367.1|2514773_2515673_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003809593.1|2515683_2516328_+	histidine phosphatase family protein	NA	NA	NA	NA	NA
WP_010930366.1|2517349_2520592_-	carbamoyl-phosphate synthase large subunit	NA	NA	NA	NA	NA
WP_023852833.1|2520602_2521757_-	glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit	NA	R4TGJ8	Halovirus	35.4	3.3e-53
WP_010930364.1|2521983_2522946_+	transaldolase	NA	H6WFR1	Cyanophage	29.2	7.5e-11
WP_076879624.1|2523044_2523995_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930363.1|2524093_2525044_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 23
NZ_CP010257	Bordetella pertussis strain I496 chromosome, complete genome	4096713	2577579	2644079	4096713	transposase	uncultured_Caudovirales_phage(40.0%)	56	NA	NA
WP_005012067.1|2577579_2578530_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811850.1|2578899_2579472_+	flagellar basal body-associated protein FliL	NA	NA	NA	NA	NA
WP_003811852.1|2579474_2580485_+	flagellar motor switch protein FliM	NA	NA	NA	NA	NA
WP_010930335.1|2580477_2580978_+	flagellar motor switch protein FliN	NA	NA	NA	NA	NA
WP_003811855.1|2580988_2581330_+	flagellar biosynthetic protein FliO	NA	NA	NA	NA	NA
WP_015041547.1|2581341_2582133_+	flagellar type III secretion system pore protein FliP	NA	NA	NA	NA	NA
WP_003811859.1|2582149_2582419_+	flagellar biosynthesis protein FliQ	NA	NA	NA	NA	NA
WP_010930333.1|2582441_2583230_+	flagellar biosynthetic protein FliR	NA	NA	NA	NA	NA
WP_010929632.1|2583276_2584293_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_014486070.1|2584509_2585952_-	PAS domain-containing protein	NA	A0A1B0V854	Salmonella_phage	41.8	1.0e-35
WP_010930332.1|2586130_2587750_-	Tar ligand binding domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	45.3	1.5e-08
WP_010930331.1|2587870_2589691_-	Tar ligand binding domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	52.6	6.4e-11
WP_010930330.1|2589769_2591302_-	flagellar hook-associated protein FlgL	NA	NA	NA	NA	NA
WP_010930329.1|2591335_2592982_-	flagellar hook-associated protein FlgK	NA	NA	NA	NA	NA
WP_010930328.1|2593051_2594074_-	flagellar assembly peptidoglycan hydrolase FlgJ	NA	A0A088F6W1	Sulfitobacter_phage	31.4	1.9e-12
WP_010930327.1|2594091_2595225_-	flagellar basal body P-ring protein FlgI	NA	NA	NA	NA	NA
WP_010930326.1|2595227_2595917_-	flagellar basal body L-ring protein FlgH	NA	NA	NA	NA	NA
WP_010930325.1|2595916_2596702_-	flagellar basal-body rod protein FlgG	NA	NA	NA	NA	NA
WP_003817181.1|2596745_2597510_-	flagellar basal body rod protein FlgF	NA	NA	NA	NA	NA
WP_003817180.1|2597548_2598970_-	flagellar hook-basal body complex protein	NA	NA	NA	NA	NA
WP_010930324.1|2599035_2599740_-	flagellar basal body rod modification protein FlgD	NA	NA	NA	NA	NA
WP_003817176.1|2599787_2600207_-	flagellar basal body rod protein FlgC	NA	NA	NA	NA	NA
WP_010930323.1|2600219_2600627_-	flagellar basal body rod protein FlgB	NA	NA	NA	NA	NA
WP_010930322.1|2600810_2601521_+	flagellar basal body P-ring formation protein FlgA	NA	NA	NA	NA	NA
WP_003817172.1|2601647_2601938_+	flagellar biosynthesis anti-sigma factor FlgM	NA	NA	NA	NA	NA
WP_003817170.1|2601955_2602438_+	flagellar protein FlgN	NA	NA	NA	NA	NA
WP_010930321.1|2606943_2608098_-	flagellar type III secretion system protein FlhB	NA	NA	NA	NA	NA
WP_010931363.1|2608403_2609420_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010930319.1|2609666_2610455_+	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003812020.1|2610521_2611202_+	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003812022.1|2611198_2611969_+	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	39.1	9.8e-30
WP_010930208.1|2612067_2613018_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811401.1|2613073_2613991_-	2-dehydropantoate 2-reductase	NA	NA	NA	NA	NA
WP_003811400.1|2614001_2615180_-	mandelate racemase/muconate lactonizing enzyme family protein	NA	NA	NA	NA	NA
WP_010930318.1|2615199_2616195_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003811396.1|2617783_2618392_+	3-isopropylmalate dehydratase small subunit	NA	NA	NA	NA	NA
WP_003811393.1|2618379_2619420_+	LacI family DNA-binding transcriptional regulator	NA	NA	NA	NA	NA
WP_003811391.1|2619437_2620400_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003811389.1|2620396_2621590_-	CoA transferase	NA	NA	NA	NA	NA
WP_010930317.1|2621586_2622384_-	citryl-CoA lyase	NA	NA	NA	NA	NA
WP_014486069.1|2622409_2623396_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930316.1|2623414_2625454_-	acetate--CoA ligase family protein	NA	NA	NA	NA	NA
WP_010930315.1|2625655_2626336_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930314.1|2626349_2627261_-	CoA ester lyase	NA	NA	NA	NA	NA
WP_003811381.1|2627257_2627836_-	NAD(P)H-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010930313.1|2627974_2628880_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930312.1|2628887_2632307_+	TM0106 family RecB-like putative nuclease	NA	NA	NA	NA	NA
WP_010930311.1|2632294_2634895_-	BP1344/BB2830 family autotransporter	NA	NA	NA	NA	NA
WP_003811375.1|2635850_2636483_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003811372.1|2636876_2637635_+	endonuclease/exonuclease/phosphatase family protein	NA	NA	NA	NA	NA
WP_003811370.1|2637631_2638834_+	cardiolipin synthase ClsB	NA	NA	NA	NA	NA
WP_010930208.1|2639021_2639972_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930310.1|2640879_2642025_+	DUF3182 family protein	NA	NA	NA	NA	NA
WP_019247449.1|2642011_2642767_+	alpha/beta fold hydrolase	NA	NA	NA	NA	NA
WP_003811361.1|2642883_2643063_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930208.1|2643128_2644079_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 24
NZ_CP010257	Bordetella pertussis strain I496 chromosome, complete genome	4096713	2807684	2862201	4096713	transposase	Diachasmimorpha_longicaudata_entomopoxvirus(20.0%)	48	NA	NA
WP_023853639.1|2807684_2808635_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931071.1|2808963_2809569_+	fimbrial major subunit FimX	NA	NA	NA	NA	NA
WP_010931072.1|2809622_2810936_-	phenylacetate--CoA ligase	NA	NA	NA	NA	NA
WP_003813284.1|2811010_2811481_-	hydroxyphenylacetyl-CoA thioesterase PaaI	NA	NA	NA	NA	NA
WP_010931073.1|2811480_2812269_-	2-(1,2-epoxy-1,2-dihydrophenyl)acetyl-CoA isomerase	NA	NA	NA	NA	NA
WP_010931074.1|2812279_2813932_-	phenylacetic acid degradation protein PaaN	NA	NA	NA	NA	NA
WP_010929591.1|2814019_2814970_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931075.1|2816131_2816638_-	phenylacetate-CoA oxygenase subunit PaaJ	NA	NA	NA	NA	NA
WP_003813293.1|2816634_2817399_-	phenylacetate-CoA oxygenase subunit PaaC	NA	NA	NA	NA	NA
WP_010931076.1|2817414_2817699_-	1,2-phenylacetyl-CoA epoxidase subunit B	NA	NA	NA	NA	NA
WP_003813298.1|2817763_2818753_-	1,2-phenylacetyl-CoA epoxidase subunit A	NA	NA	NA	NA	NA
WP_010931077.1|2818924_2819854_+	phenylacetic acid degradation operon negative regulatory protein PaaX	NA	NA	NA	NA	NA
WP_003813302.1|2819825_2820512_-	NAD(P)H-hydrate epimerase	NA	NA	NA	NA	NA
WP_003813303.1|2820545_2821091_-	oligoribonuclease	NA	Q8B5Y0	Diachasmimorpha_longicaudata_entomopoxvirus	37.7	2.1e-26
WP_003813306.1|2821135_2822401_+	M48 family metallopeptidase	NA	NA	NA	NA	NA
WP_003813309.1|2822397_2823300_+	ribosome small subunit-dependent GTPase A	NA	NA	NA	NA	NA
WP_019247679.1|2824481_2825426_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931079.1|2825520_2827038_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931080.1|2827079_2828708_-	gamma-glutamyltransferase	NA	NA	NA	NA	NA
WP_003811986.1|2828815_2829697_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931081.1|2832809_2833184_+	endonuclease	NA	F4YXR7	Roseobacter_phage	54.4	2.1e-25
WP_003812004.1|2833208_2833547_-	P-II family nitrogen regulator	NA	NA	NA	NA	NA
WP_010931082.1|2833590_2835225_-	NAD+ synthase	NA	A0A2L0UZF5	Agrobacterium_phage	36.6	8.3e-87
WP_010931083.1|2835263_2836610_-	mechanosensitive ion channel family protein	NA	NA	NA	NA	NA
WP_003812010.1|2836717_2838139_+	argininosuccinate lyase	NA	NA	NA	NA	NA
WP_010931084.1|2838208_2838793_-	nitroreductase	NA	NA	NA	NA	NA
WP_005012067.1|2838895_2839846_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931085.1|2839980_2841087_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010931086.1|2841097_2842195_+	GTP 3',8-cyclase MoaA	NA	NA	NA	NA	NA
WP_010931087.1|2842339_2843545_-	molybdopterin molybdotransferase MoeA	NA	NA	NA	NA	NA
WP_010931088.1|2843551_2844073_-	molybdenum cofactor biosynthesis protein B	NA	NA	NA	NA	NA
WP_010931089.1|2844069_2844561_-	molybdenum cofactor biosynthesis protein MoaE	NA	NA	NA	NA	NA
WP_003819740.1|2844557_2844809_-	MoaD/ThiS family protein	NA	NA	NA	NA	NA
WP_003819741.1|2844789_2845275_-	cyclic pyranopterin monophosphate synthase MoaC	NA	NA	NA	NA	NA
WP_010931090.1|2845410_2848872_+	DUF748 domain-containing protein	NA	NA	NA	NA	NA
WP_010931091.1|2848889_2849774_+	dienelactone hydrolase family protein	NA	NA	NA	NA	NA
WP_010931092.1|2849783_2850215_-	lipoprotein	NA	NA	NA	NA	NA
WP_003809348.1|2850461_2850965_+	peroxiredoxin	NA	M1I839	Pelagibacter_phage	44.1	1.8e-24
WP_010931094.1|2851042_2852443_+	MFS transporter	NA	NA	NA	NA	NA
WP_010931095.1|2852517_2853393_-	membrane protein	NA	NA	NA	NA	NA
WP_023853546.1|2853389_2854397_-	biotin synthase BioB	NA	NA	NA	NA	NA
WP_010931097.1|2854864_2855170_+	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
WP_003819753.1|2855260_2855851_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930525.1|2856041_2857058_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010931098.1|2857249_2859586_-	heavy metal translocating P-type ATPase	NA	E4ZFI9	Streptococcus_phage	42.8	3.2e-124
WP_003812014.1|2859668_2860103_+	Cd(II)/Pb(II)-responsive transcriptional regulator	NA	NA	NA	NA	NA
WP_023995489.1|2860201_2861152_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|2861250_2862201_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 25
NZ_CP010257	Bordetella pertussis strain I496 chromosome, complete genome	4096713	2870226	2927012	4096713	transposase,protease	uncultured_Mediterranean_phage(28.57%)	41	NA	NA
WP_005012067.1|2870226_2871177_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931105.1|2872883_2873150_-	accessory factor UbiK family protein	NA	NA	NA	NA	NA
WP_003812839.1|2873857_2874196_+	P-II family nitrogen regulator	NA	NA	NA	NA	NA
WP_010931107.1|2878749_2879352_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931108.1|2879448_2880738_+	MFS transporter	NA	NA	NA	NA	NA
WP_003812846.1|2880795_2881527_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	31.0	1.4e-12
WP_010931109.1|2881523_2882327_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	23.5	7.9e-14
WP_003812851.1|2882323_2883412_-	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
WP_003820410.1|2883408_2884338_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003812857.1|2884486_2885632_-	branched-chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930800.1|2885653_2886604_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_154698391.1|2886621_2886780_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931110.1|2886934_2890756_-	trifunctional transcriptional regulator/proline dehydrogenase/L-glutamate gamma-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
WP_010931111.1|2890912_2891581_-	membrane integrity-associated transporter subunit PqiC	NA	NA	NA	NA	NA
WP_014905522.1|2891585_2893259_-	MCE family protein	NA	NA	NA	NA	NA
WP_003820402.1|2893277_2894597_-	PqiA/YebS family transporter subunit	NA	NA	NA	NA	NA
WP_010931114.1|2894601_2896917_-|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	protease	A0A223W0B1	Agrobacterium_phage	41.9	4.1e-164
WP_010931115.1|2896972_2899141_-	penicillin-binding protein 1C	NA	NA	NA	NA	NA
WP_010931116.1|2899137_2904327_-	alpha-2-macroglobulin family protein	NA	NA	NA	NA	NA
WP_003820400.1|2904416_2904731_-|protease	ATP-dependent Clp protease adapter ClpS	protease	A0A1B1IT64	uncultured_Mediterranean_phage	43.8	1.2e-10
WP_062810232.1|2904958_2905204_+	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	75.0	6.5e-20
WP_003820399.1|2905298_2905817_+	DUF192 domain-containing protein	NA	A0A1B1IUW8	uncultured_Mediterranean_phage	42.2	5.1e-14
WP_010931117.1|2905916_2907122_-	3-oxoadipyl-CoA thiolase	NA	NA	NA	NA	NA
WP_019247560.1|2907237_2908635_-	chloride channel protein	NA	NA	NA	NA	NA
WP_010931119.1|2908751_2909330_-	superoxide dismutase [Fe]	NA	NA	NA	NA	NA
WP_010931120.1|2909402_2910794_-	exodeoxyribonuclease VII large subunit	NA	A0A1V0SD82	Indivirus	32.0	1.4e-29
WP_005012067.1|2910961_2911912_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812889.1|2912192_2912813_+	MotA/TolQ/ExbB proton channel family protein	NA	NA	NA	NA	NA
WP_010931122.1|2912809_2913223_+	biopolymer transporter ExbD	NA	NA	NA	NA	NA
WP_010931123.1|2913219_2914263_+	tetraacyldisaccharide 4'-kinase	NA	NA	NA	NA	NA
WP_003812895.1|2914318_2914507_+	Trm112 family protein	NA	NA	NA	NA	NA
WP_010931124.1|2914516_2915281_+	3-deoxy-manno-octulosonate cytidylyltransferase	NA	NA	NA	NA	NA
WP_010931125.1|2915371_2916028_+	adenylate kinase	NA	NA	NA	NA	NA
WP_010931126.1|2916119_2916878_+	3-hydroxyacyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_010931127.1|2916903_2918505_+	murein biosynthesis integral membrane protein MurJ	NA	NA	NA	NA	NA
WP_010931128.1|2918705_2919710_+	FecR domain-containing protein	NA	NA	NA	NA	NA
WP_003812908.1|2919810_2920074_+	30S ribosomal protein S20	NA	NA	NA	NA	NA
WP_010931129.1|2920191_2920968_-	2-dehydro-3-deoxyglucarate aldolase	NA	NA	NA	NA	NA
WP_005012067.1|2921558_2922509_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931130.1|2924892_2926005_-	Ldh family oxidoreductase	NA	NA	NA	NA	NA
WP_005012808.1|2926061_2927012_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 26
NZ_CP010257	Bordetella pertussis strain I496 chromosome, complete genome	4096713	2957398	3001089	4096713	transposase	Planktothrix_phage(33.33%)	41	NA	NA
WP_005012067.1|2957398_2958349_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_162268686.1|2958366_2958516_+	hypothetical protein	NA	NA	NA	NA	NA
WP_023852715.1|2958469_2959366_-	inositol monophosphatase	NA	NA	NA	NA	NA
WP_003814547.1|2961643_2963869_+	glycoside hydrolase family 31 protein	NA	NA	NA	NA	NA
WP_003814544.1|2964033_2965122_+	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	36.4	8.7e-32
WP_019247918.1|2965078_2965732_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931144.1|2965779_2966577_+	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930176.1|2967108_2968059_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247277.1|2968133_2969288_+	iron-containing alcohol dehydrogenase	NA	NA	NA	NA	NA
WP_005012067.1|2969344_2970295_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814535.1|2970393_2970699_-	antibiotic biosynthesis monooxygenase	NA	NA	NA	NA	NA
WP_003820797.1|2970727_2971162_-	DUF126 domain-containing protein	NA	NA	NA	NA	NA
WP_010931147.1|2971163_2972408_-	DUF521 domain-containing protein	NA	NA	NA	NA	NA
WP_003820799.1|2972404_2973115_-	FadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_033446288.1|2973129_2974041_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931149.1|2974403_2974808_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247890.1|2974804_2975263_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_019247891.1|2975269_2976178_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_010931150.1|2976174_2977041_+	sugar ABC transporter permease	NA	NA	NA	NA	NA
WP_003814524.1|2977027_2977855_+	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
WP_003820806.1|2977865_2978993_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	32.3	1.2e-23
WP_023852748.1|2980070_2981309_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931152.1|2981350_2982613_+	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_010931153.1|2982619_2983372_+	DNA-binding protein	NA	NA	NA	NA	NA
WP_019248355.1|2983423_2983609_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003820813.1|2983884_2984349_+	redox-sensitive transcriptional activator SoxR	NA	NA	NA	NA	NA
WP_003820814.1|2984380_2985040_+	DNA-3-methyladenine glycosylase I	NA	NA	NA	NA	NA
WP_010931154.1|2985184_2987293_+	AsmA family protein	NA	NA	NA	NA	NA
WP_023852714.1|2987289_2988240_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931155.1|2988343_2988964_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931156.1|2989055_2989808_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_019248356.1|2990942_2992067_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247402.1|2992112_2992481_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|2992722_2993673_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247492.1|2994708_2995251_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023998107.1|2995448_2995619_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|2995636_2996587_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023997028.1|2996583_2997549_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003815281.1|2997618_2998455_+	3-methyl-2-oxobutanoate hydroxymethyltransferase	NA	A0A0P0BXC9	Ostreococcus_lucimarinus_virus	33.3	1.6e-33
WP_010931158.1|2998967_3000077_+	porin	NA	NA	NA	NA	NA
WP_005012067.1|3000138_3001089_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 28
NZ_CP010257	Bordetella pertussis strain I496 chromosome, complete genome	4096713	3381034	3434775	4096713	transposase	Staphylococcus_phage(33.33%)	48	NA	NA
WP_023995489.1|3381034_3381985_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931336.1|3382389_3383034_-	urease accessory protein UreG	NA	NA	NA	NA	NA
WP_019247677.1|3383058_3383643_-	urease accessory protein UreF	NA	NA	NA	NA	NA
WP_014905506.1|3383743_3384361_-	urease accessory protein UreE	NA	NA	NA	NA	NA
WP_010931337.1|3384363_3386079_-	urease subunit alpha	NA	NA	NA	NA	NA
WP_010931338.1|3386075_3386384_-	urease subunit beta	NA	NA	NA	NA	NA
WP_003814828.1|3386400_3387018_-	HupE/UreJ family protein	NA	NA	NA	NA	NA
WP_010931340.1|3387062_3387365_-	urease subunit gamma	NA	NA	NA	NA	NA
WP_003814832.1|3387465_3388320_-	urease accessory protein UreD	NA	NA	NA	NA	NA
WP_124740609.1|3388507_3388732_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929281.1|3388901_3389174_+	MerR family DNA-binding transcriptional regulator	NA	NA	NA	NA	NA
WP_010929282.1|3389591_3389999_-	GFA family protein	NA	NA	NA	NA	NA
WP_010931341.1|3390368_3391163_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010927102.1|3391263_3392499_+	methylaspartate ammonia-lyase	NA	NA	NA	NA	NA
WP_003814852.1|3392567_3393584_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931342.1|3393595_3394972_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_003814856.1|3394968_3396165_+	MFS transporter	NA	NA	NA	NA	NA
WP_003814858.1|3396161_3397700_-	SpoVR family protein	NA	NA	NA	NA	NA
WP_010931343.1|3397696_3398956_-	YeaH/YhbH family protein	NA	NA	NA	NA	NA
WP_005012067.1|3400896_3401847_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931344.1|3402613_3403708_-	CoA transferase	NA	NA	NA	NA	NA
WP_019247312.1|3403700_3405035_-	AMP-binding protein	NA	NA	NA	NA	NA
WP_003808193.1|3404988_3405672_-	TetR family transcriptional regulator	NA	NA	NA	NA	NA
WP_024000003.1|3405697_3406861_-	acyl-CoA dehydrogenase family protein	NA	NA	NA	NA	NA
WP_004566224.1|3406857_3407859_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010931346.1|3407858_3408731_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010931347.1|3408727_3409477_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	27.8	1.9e-09
WP_010931348.1|3409473_3410265_-	ATP-binding cassette domain-containing protein	NA	A0A1M7XV31	Cedratvirus	29.4	1.7e-08
WP_010931349.1|3410261_3411401_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_047122778.1|3411676_3412462_+	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_014486103.1|3412495_3413278_+	crotonase/enoyl-CoA hydratase family protein	NA	NA	NA	NA	NA
WP_010931351.1|3413281_3413671_+	OB-fold domain-containing protein	NA	NA	NA	NA	NA
WP_010931352.1|3414810_3415674_+	MaoC family dehydratase N-terminal domain-containing protein	NA	NA	NA	NA	NA
WP_010931353.1|3415709_3416798_+	NAD(P)H-binding protein	NA	NA	NA	NA	NA
WP_010931070.1|3416794_3417745_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247959.1|3418098_3421077_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003818344.1|3422003_3422882_+	fatty acid desaturase	NA	NA	NA	NA	NA
WP_005013747.1|3424830_3425781_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931354.1|3425777_3426245_-	ribonuclease HI	NA	J9Q745	Salmonella_phage	50.7	5.6e-36
WP_010931355.1|3426287_3427058_-	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_010927090.1|3427078_3427879_+	hydroxyacylglutathione hydrolase	NA	NA	NA	NA	NA
WP_010931356.1|3427889_3429299_+	transglycosylase SLT domain-containing protein	NA	NA	NA	NA	NA
WP_003814739.1|3429393_3430179_+	enoyl-ACP reductase FabI	NA	NA	NA	NA	NA
WP_010931561.1|3430418_3431435_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003814742.1|3431542_3431935_-	OsmC family protein	NA	NA	NA	NA	NA
WP_010931357.1|3432072_3432753_+	tellurite resistance TerB family protein	NA	NA	NA	NA	NA
WP_023994844.1|3432757_3433729_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930179.1|3433824_3434775_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 29
NZ_CP010257	Bordetella pertussis strain I496 chromosome, complete genome	4096713	3440930	3500228	4096713	transposase,tRNA	Acinetobacter_phage(27.27%)	48	NA	NA
WP_003820957.1|3440930_3442694_+|tRNA	glutamine--tRNA ligase/YqeY domain fusion protein	tRNA	A0A222YZ70	Escherichia_phage	50.0	5.0e-162
WP_010931362.1|3442805_3443684_+	septum site-determining protein MinC	NA	NA	NA	NA	NA
WP_003814250.1|3443796_3444612_+	septum site-determining protein MinD	NA	NA	NA	NA	NA
WP_003814252.1|3444615_3444867_+	cell division topological specificity factor MinE	NA	NA	NA	NA	NA
WP_010929632.1|3444951_3445968_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003814254.1|3446298_3446520_-	glycine zipper 2TM domain-containing protein	NA	NA	NA	NA	NA
WP_019247693.1|3448880_3449798_-	DMT family transporter	NA	NA	NA	NA	NA
WP_019247692.1|3450295_3451504_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931365.1|3451583_3453155_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003814275.1|3453272_3454208_-	glycosyltransferase family 2 protein	NA	NA	NA	NA	NA
WP_003814277.1|3454396_3455341_+	LysR family transcriptional regulator	NA	A0A2P0ZL89	Lactobacillus_phage	23.2	8.4e-07
WP_003814283.1|3455908_3461626_+	excinuclease ABC subunit UvrA	NA	A0A1B1IVR3	uncultured_Mediterranean_phage	39.5	1.0e-195
WP_010931367.1|3461631_3462759_+	aminodeoxychorismate synthase component I	NA	S4VT78	Pandoravirus	37.8	3.8e-38
WP_003814287.1|3462814_3463441_+	aminotransferase class IV	NA	NA	NA	NA	NA
WP_010931363.1|3463712_3464729_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010927020.1|3464824_3465535_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010931368.1|3465531_3466521_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931369.1|3466616_3468248_+	AMP-binding protein	NA	NA	NA	NA	NA
WP_010931370.1|3468250_3468988_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247745.1|3469143_3470016_-|tRNA	tRNA threonylcarbamoyladenosine dehydratase	tRNA	NA	NA	NA	NA
WP_003814298.1|3470284_3471505_+	MFS transporter	NA	NA	NA	NA	NA
WP_003814300.1|3471501_3472161_+	gamma-glutamylcyclotransferase	NA	NA	NA	NA	NA
WP_003814302.1|3472232_3472865_+	pyridoxamine 5'-phosphate oxidase	NA	NA	NA	NA	NA
WP_010931372.1|3472894_3473413_+	flavin reductase family protein	NA	NA	NA	NA	NA
WP_010931373.1|3473423_3474533_+	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_003814312.1|3474579_3475434_+	formyltetrahydrofolate deformylase	NA	NA	NA	NA	NA
WP_010931374.1|3475435_3476338_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|3477560_3478511_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023997720.1|3480265_3481255_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247413.1|3481251_3481410_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931375.1|3481430_3482219_-	indole-3-glycerol phosphate synthase TrpC	NA	A0A0P0IR83	Acinetobacter_phage	53.0	5.1e-66
WP_003817833.1|3482215_3483247_-	anthranilate phosphoribosyltransferase	NA	A0A0N7IRD9	Acinetobacter_phage	42.7	7.4e-73
WP_003815390.1|3483265_3483829_-	aminodeoxychorismate/anthranilate synthase component II	NA	A0A0P0IKJ1	Acinetobacter_phage	62.1	1.1e-65
WP_010931376.1|3483884_3485405_-	anthranilate synthase component I	NA	S4VT78	Pandoravirus	32.1	9.0e-43
WP_010931377.1|3485668_3486373_-	phosphoglycolate phosphatase	NA	NA	NA	NA	NA
WP_003815384.1|3486380_3487118_-	ribulose-phosphate 3-epimerase	NA	NA	NA	NA	NA
WP_003815381.1|3487223_3487598_+	Co2+/Mg2+ efflux protein ApaG	NA	NA	NA	NA	NA
WP_003815379.1|3487640_3488930_+	murein transglycosylase A	NA	NA	NA	NA	NA
WP_010931378.1|3488926_3490096_+	UbiH/UbiF family hydroxylase	NA	NA	NA	NA	NA
WP_010931379.1|3490092_3490932_+	thiol:disulfide interchange protein DsbC	NA	NA	NA	NA	NA
WP_010931380.1|3490991_3491927_+	D-2-hydroxyacid dehydrogenase family protein	NA	A0A1J0F959	Only_Syngen_Nebraska_virus	27.7	6.4e-15
WP_005012067.1|3491939_3492890_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931381.1|3492988_3493951_-|tRNA	tRNA 2-thiocytidine(32) synthetase TtcA	tRNA	A0A0U2S5Z2	Escherichia_phage	64.5	4.6e-93
WP_003817821.1|3493982_3494342_-	dihydroneopterin aldolase	NA	NA	NA	NA	NA
WP_010931382.1|3494466_3495369_+	NAD(P)/FAD-dependent oxidoreductase	NA	G3MA85	Bacillus_virus	24.0	1.9e-08
WP_010931383.1|3495370_3497143_-	M61 family metallopeptidase	NA	NA	NA	NA	NA
WP_003815367.1|3497177_3497954_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_023852617.1|3499277_3500228_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 30
NZ_CP010257	Bordetella pertussis strain I496 chromosome, complete genome	4096713	3515166	3577366	4096713	transposase,tRNA	Planktothrix_phage(10.0%)	51	NA	NA
WP_005012808.1|3515166_3516117_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931392.1|3516245_3517379_-	M20 family metallopeptidase	NA	NA	NA	NA	NA
WP_010931393.1|3517422_3518328_-	hydrolase	NA	NA	NA	NA	NA
WP_023852622.1|3518330_3520031_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	32.7	1.0e-15
WP_010931394.1|3520027_3520948_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_003817805.1|3520955_3521933_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931395.1|3521991_3523026_-	succinylglutamate desuccinylase/aspartoacylase family protein	NA	NA	NA	NA	NA
WP_003815317.1|3525000_3525237_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023995266.1|3525363_3526227_-	NAD(P)H-hydrate dehydratase	NA	NA	NA	NA	NA
WP_003815315.1|3526315_3527137_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003815313.1|3527216_3527954_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010931397.1|3527950_3528943_-	nitronate monooxygenase	NA	NA	NA	NA	NA
WP_003817794.1|3529056_3529719_+	TetR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931399.1|3529763_3530912_+	acyl-CoA dehydrogenase family protein	NA	NA	NA	NA	NA
WP_010931400.1|3533235_3534186_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014486105.1|3534526_3535477_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_014905478.1|3536620_3537619_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_033446233.1|3537581_3538016_+	carbon monoxide dehydrogenase	NA	NA	NA	NA	NA
WP_010929974.1|3539532_3540417_+	DMT family transporter	NA	NA	NA	NA	NA
WP_010929973.1|3540413_3541619_-	cardiolipin synthase ClsB	NA	NA	NA	NA	NA
WP_010929972.1|3541615_3542476_-	endonuclease/exonuclease/phosphatase family protein	NA	NA	NA	NA	NA
WP_003807038.1|3542588_3544379_-|tRNA	aspartate--tRNA ligase	tRNA	A0A1V0SAC0	Catovirus	25.5	6.5e-08
WP_003807035.1|3544419_3545085_-	DUF502 domain-containing protein	NA	A0A2I7S9X1	Vibrio_phage	28.4	6.7e-11
WP_010929971.1|3545085_3545394_-	FmdB family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929970.1|3545559_3546846_-	putative Na+/H+ antiporter	NA	NA	NA	NA	NA
WP_010929969.1|3548279_3549230_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929968.1|3551181_3552396_-	formate-dependent phosphoribosylglycinamide formyltransferase	NA	NA	NA	NA	NA
WP_003815171.1|3552501_3553491_+	KpsF/GutQ family sugar-phosphate isomerase	NA	A0A2P0VNK5	Tetraselmis_virus	37.7	4.3e-38
WP_003815172.1|3553487_3554096_+	HAD-IIIA family hydrolase	NA	E3T535	Cafeteria_roenbergensis_virus	26.1	5.2e-10
WP_010929967.1|3554108_3554738_+	LPS export ABC transporter periplasmic protein LptC	NA	NA	NA	NA	NA
WP_003815175.1|3554734_3555355_+	lipopolysaccharide transport periplasmic protein LptA	NA	NA	NA	NA	NA
WP_003815177.1|3555386_3556178_+	LPS export ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	27.4	9.5e-20
WP_010929966.1|3557029_3557485_+	PTS sugar transporter subunit IIA	NA	NA	NA	NA	NA
WP_010929965.1|3557503_3558430_+	HPr kinase/phosphorylase	NA	NA	NA	NA	NA
WP_010929964.1|3558483_3559770_-	cytochrome c	NA	NA	NA	NA	NA
WP_003815183.1|3560700_3561573_+	RNase adapter RapZ	NA	A0A1P8D5W0	Corynebacterium_phage	34.5	2.4e-08
WP_010929963.1|3561569_3562520_+	septal ring lytic transglycosylase RlpA family protein	NA	F5B3X9	Synechococcus_phage	47.2	6.9e-17
WP_005012067.1|3562618_3563569_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_020699695.1|3563673_3563904_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247263.1|3564030_3564420_-	SRPBCC family protein	NA	NA	NA	NA	NA
WP_010929962.1|3564436_3566818_-	xanthine dehydrogenase family protein molybdopterin-binding subunit	NA	NA	NA	NA	NA
WP_023853194.1|3566810_3568187_-	FAD binding domain-containing protein	NA	A0A0P0IVM8	Acinetobacter_phage	37.3	2.4e-18
WP_010929960.1|3568202_3569198_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003819054.1|3569216_3570209_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003807624.1|3570449_3571010_-	UbiX family flavin prenyltransferase	NA	NA	NA	NA	NA
WP_010929959.1|3571014_3571341_-	Grx4 family monothiol glutaredoxin	NA	NA	NA	NA	NA
WP_010929958.1|3571377_3572190_-	peptide chain release factor N(5)-glutamine methyltransferase	NA	NA	NA	NA	NA
WP_003807618.1|3572200_3573283_-	peptide chain release factor 1	NA	A0A0S4KWG0	Pseudomonas_phage	40.7	3.3e-07
WP_010929957.1|3573369_3574644_-|tRNA	glutamyl-tRNA reductase	tRNA	NA	NA	NA	NA
WP_010929956.1|3575366_3576317_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|3576415_3577366_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 32
NZ_CP010257	Bordetella pertussis strain I496 chromosome, complete genome	4096713	4018884	4072316	4096713	transposase	Planktothrix_phage(40.0%)	46	NA	NA
WP_010931661.1|4018884_4019835_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931662.1|4020004_4021231_+	bifunctional glutamate N-acetyltransferase/amino-acid acetyltransferase ArgJ	NA	NA	NA	NA	NA
WP_010931663.1|4021430_4022297_+	ATP-binding protein	NA	NA	NA	NA	NA
WP_003815027.1|4022289_4023252_+	Nudix family hydrolase	NA	A0A221LFJ1	Barns_Ness_breadcrumb_sponge_sobemo-like_virus	53.4	1.9e-06
WP_010927663.1|4023352_4024303_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|4024401_4025352_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929577.1|4025450_4026401_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994937.1|4026397_4027891_-	efflux transporter outer membrane subunit	NA	NA	NA	NA	NA
WP_003815032.1|4027887_4030995_-	multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_010931665.1|4030991_4034060_-	MdtB/MuxB family multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_010931666.1|4034056_4035307_-	MdtA/MuxA family multidrug efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
WP_003815038.1|4035487_4036249_-	cell division protein ZapD	NA	NA	NA	NA	NA
WP_019247320.1|4036281_4036932_-	dephospho-CoA kinase	NA	NA	NA	NA	NA
WP_003820519.1|4036934_4037774_-	prepilin peptidase	NA	NA	NA	NA	NA
WP_003815047.1|4038014_4038758_+	copper resistance protein NlpE N-terminal domain-containing protein	NA	NA	NA	NA	NA
WP_003815049.1|4038840_4039188_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003815051.1|4039285_4040128_-	pantoate--beta-alanine ligase	NA	NA	NA	NA	NA
WP_003815053.1|4040172_4041060_-	segregation/condensation protein A	NA	NA	NA	NA	NA
WP_003815055.1|4041086_4041275_-	DUF3460 family protein	NA	NA	NA	NA	NA
WP_010931669.1|4041372_4042830_+	DHA2 family efflux MFS transporter permease subunit	NA	NA	NA	NA	NA
WP_010931670.1|4042816_4044343_+	glycerol kinase GlpK	NA	NA	NA	NA	NA
WP_003815061.1|4044361_4044829_-	CopD family protein	NA	NA	NA	NA	NA
WP_010931671.1|4044828_4045851_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_169507388.1|4045971_4046691_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	39.9	4.7e-34
WP_003815066.1|4046766_4047867_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003815068.1|4047868_4049059_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003815070.1|4049178_4050195_-	amino acid ABC transporter substrate-binding protein	NA	A0A1B1IT51	uncultured_Mediterranean_phage	42.1	1.0e-71
WP_003815073.1|4050513_4051185_+	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	38.2	9.5e-29
WP_010927126.1|4051181_4052090_+	FtsX-like permease family protein	NA	NA	NA	NA	NA
WP_010931672.1|4052301_4052949_+	chemoreceptor glutamine deamidase CheD	NA	NA	NA	NA	NA
WP_010931673.1|4056800_4057877_+	A/G-specific adenine glycosylase	NA	NA	NA	NA	NA
WP_003815084.1|4057887_4058697_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_023999981.1|4058786_4059560_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_023853189.1|4059560_4059725_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930363.1|4059742_4060693_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_077274100.1|4060581_4061604_+	CoA transferase	NA	NA	NA	NA	NA
WP_010931674.1|4061593_4062748_+	CoA transferase	NA	NA	NA	NA	NA
WP_010931675.1|4062787_4064200_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_019247370.1|4064324_4065191_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931677.1|4065192_4066017_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_023853488.1|4066013_4066775_+	nitroreductase	NA	M1I6Q5	Acanthocystis_turfacea_Chlorella_virus	31.0	2.0e-19
WP_003808010.1|4066855_4067542_-	TetR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931679.1|4067715_4068723_+	hydroxymethylglutaryl-CoA lyase	NA	NA	NA	NA	NA
WP_003819309.1|4068719_4069499_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010931680.1|4069556_4070819_+	CoA transferase	NA	NA	NA	NA	NA
WP_010929591.1|4071365_4072316_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
