The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP010255	Bordetella pertussis strain I480 chromosome, complete genome	4106388	27282	70036	4106388	transposase,tRNA	Synechococcus_phage(50.0%)	41	NA	NA
WP_010930363.1|27282_28233_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023995007.1|28314_28650_-	CoA transferase	NA	NA	NA	NA	NA
WP_010929578.1|28674_29109_-	OB-fold domain-containing protein	NA	NA	NA	NA	NA
WP_019247164.1|29141_30359_-	thiolase family protein	NA	NA	NA	NA	NA
WP_010929580.1|30364_30862_-	MaoC family dehydratase	NA	NA	NA	NA	NA
WP_019247165.1|31069_32005_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929582.1|32214_33006_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010929583.1|33048_34470_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_010929584.1|34625_35576_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814398.1|35572_36763_-	MFS transporter	NA	NA	NA	NA	NA
WP_010929585.1|37012_37924_+|tRNA	glycine--tRNA ligase subunit alpha	tRNA	NA	NA	NA	NA
WP_010929586.1|37925_40064_+|tRNA	glycine--tRNA ligase subunit beta	tRNA	NA	NA	NA	NA
WP_003814404.1|40060_40600_+	D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase	NA	NA	NA	NA	NA
WP_003814405.1|40603_41332_+	1-acyl-sn-glycerol-3-phosphate acyltransferase	NA	NA	NA	NA	NA
WP_010929587.1|41318_42212_+	M48 family metallopeptidase	NA	NA	NA	NA	NA
WP_019247766.1|42282_42678_+	lactoylglutathione lyase	NA	NA	NA	NA	NA
WP_003814412.1|42687_43218_+	peptide deformylase	NA	E3SLL2	Synechococcus_phage	35.4	3.7e-12
WP_010929588.1|43663_44614_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929589.1|45200_45749_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815265.1|45720_45957_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003815255.1|46084_46978_+	AEC family transporter	NA	NA	NA	NA	NA
WP_010929590.1|48147_49395_+	homoserine O-acetyltransferase	NA	NA	NA	NA	NA
WP_003817748.1|49391_50006_+	methionine biosynthesis protein MetW	NA	NA	NA	NA	NA
WP_010929591.1|50141_51092_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_029443813.1|51134_52391_+	muropeptide transporter	NA	NA	NA	NA	NA
WP_010929592.1|53622_54357_-	aspartate/glutamate racemase family protein	NA	NA	NA	NA	NA
WP_019247224.1|54362_54953_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.6	3.2e-20
WP_003817737.1|54977_55667_-	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_023852650.1|55663_56425_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010929594.1|56504_57404_-	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_005012808.1|57497_58448_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929595.1|59248_60475_-	type II toxin-antitoxin system HipA family toxin	NA	NA	NA	NA	NA
WP_047122776.1|60474_60888_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010929597.1|61077_62019_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019248755.1|62442_63417_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929599.1|63473_64055_-	DJ-1/PfpI family protein	NA	NA	NA	NA	NA
WP_010929600.1|64067_64370_-	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA	NA
WP_029443770.1|64488_65547_-	2Fe-2S iron-sulfur cluster binding domain-containing protein	NA	NA	NA	NA	NA
WP_019247832.1|65581_66853_-	TRAP transporter large permease	NA	NA	NA	NA	NA
WP_010929603.1|67482_68664_-	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929584.1|69085_70036_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 2
NZ_CP010255	Bordetella pertussis strain I480 chromosome, complete genome	4106388	77634	136108	4106388	transposase,tRNA	Planktothrix_phage(22.22%)	54	NA	NA
WP_005012067.1|77634_78585_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_041166334.1|78659_79604_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929608.1|79600_81475_-	O-antigen biosynthesis protein WlbL	NA	A0A2P1ELS8	Moumouvirus	26.9	2.0e-23
WP_003807102.1|82822_83527_-	O-antigen biosynthesis protein WlbI	NA	NA	NA	NA	NA
WP_010929609.1|83523_84696_-	O-antigen biosynthesis protein WlbH	NA	NA	NA	NA	NA
WP_010929610.1|84891_85485_-	O-antigen biosynthesis protein WlbG	NA	NA	NA	NA	NA
WP_010929611.1|85481_86714_-	O-antigen biosynthesis protein WlbF	NA	NA	NA	NA	NA
WP_010929612.1|86731_87991_-	O-antigen biosynthesis protein WlbE	NA	NA	NA	NA	NA
WP_010929613.1|88014_89103_-	O-antigen biosynthesis protein WlbD	NA	A0A0N9R0B2	Chrysochromulina_ericina_virus	36.3	4.8e-46
WP_010929614.1|89110_90211_-	O-antigen biosynthesis protein WlbC	NA	A0A2K9L0G1	Tupanvirus	29.7	3.3e-31
WP_003807114.1|90214_90790_-	O-antigen biosynthesis protein WlbB	NA	NA	NA	NA	NA
WP_003807115.1|90793_91846_-	O-antigen biosynthesis protein WlbA	NA	NA	NA	NA	NA
WP_010929615.1|91976_92984_+	lipopolysaccharide heptosyltransferase I	NA	NA	NA	NA	NA
WP_010929616.1|92985_94272_+	3-deoxy-D-manno-octulosonic acid transferase	NA	NA	NA	NA	NA
WP_003807124.1|94288_94444_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929617.1|94468_95272_-	type III pantothenate kinase	NA	NA	NA	NA	NA
WP_010929618.1|95268_96135_-	biotin--[acetyl-CoA-carboxylase] ligase	NA	NA	NA	NA	NA
WP_010929619.1|96209_97340_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_003807131.1|97339_98179_+	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	32.4	9.1e-21
WP_010929620.1|99111_99714_+	membrane integrity-associated transporter subunit PqiC	NA	NA	NA	NA	NA
WP_010929621.1|99743_100397_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003807138.1|100529_101786_+	D-alanyl-D-alanine carboxypeptidase	NA	B6DZZ7	Stx2-converting_phage	40.5	6.2e-66
WP_010929622.1|101833_102733_+	D-amino acid aminotransferase	NA	NA	NA	NA	NA
WP_003818417.1|102808_103084_+	YbeD family protein	NA	NA	NA	NA	NA
WP_010929623.1|103091_103754_+	lipoyl(octanoyl) transferase LipB	NA	NA	NA	NA	NA
WP_003807146.1|103815_104817_+	lipoyl synthase	NA	NA	NA	NA	NA
WP_003807148.1|104831_105380_-	dTDP-4-dehydrorhamnose 3,5-epimerase	NA	A0A291LA62	Escherichia_phage	53.4	3.7e-47
WP_010929624.1|105437_106334_-	dTDP-4-dehydrorhamnose reductase	NA	NA	NA	NA	NA
WP_010929625.1|106330_107392_-	dTDP-glucose 4,6-dehydratase	NA	A0A1D7XFE8	Escherichia_phage	44.8	1.6e-78
WP_010929626.1|107427_108378_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929627.1|109277_110471_+	cystathionine beta-lyase	NA	NA	NA	NA	NA
WP_010929628.1|110552_111182_-	thiol:disulfide interchange protein DsbA/DsbL	NA	NA	NA	NA	NA
WP_010927242.1|111243_111927_-	SPOR domain-containing protein	NA	NA	NA	NA	NA
WP_023853376.1|111936_113619_-|tRNA	arginine--tRNA ligase	tRNA	NA	NA	NA	NA
WP_003815933.1|113906_114254_+	DUF1840 domain-containing protein	NA	NA	NA	NA	NA
WP_003815930.1|114344_114662_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931363.1|114944_115961_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003815929.1|116036_116837_-	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
WP_003815927.1|116833_117709_-	sugar ABC transporter permease	NA	NA	NA	NA	NA
WP_010929633.1|117719_119012_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929634.1|119054_120095_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.7	6.0e-22
WP_010929635.1|120200_121022_-	phosphodiesterase	NA	NA	NA	NA	NA
WP_005012067.1|121122_122073_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014905488.1|122171_123077_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	31.7	9.8e-21
WP_003815918.1|123073_123907_-	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_010929637.1|124743_125754_-	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_019247800.1|125750_126140_-	substrate-binding domain-containing protein	NA	NA	NA	NA	NA
WP_010929638.1|127033_128287_+	amidase	NA	NA	NA	NA	NA
WP_010929639.1|128377_130078_-	2-isopropylmalate synthase	NA	NA	NA	NA	NA
WP_010929640.1|130504_131152_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023853393.1|131150_132590_+	RNA polymerase factor sigma-54	NA	NA	NA	NA	NA
WP_003815905.1|132682_132985_+	bacterioferritin-associated ferredoxin	NA	NA	NA	NA	NA
WP_010929512.1|133012_133891_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|135157_136108_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 3
NZ_CP010255	Bordetella pertussis strain I480 chromosome, complete genome	4106388	164894	225405	4106388	transposase,protease,tRNA	Diachasmimorpha_longicaudata_entomopoxvirus(11.11%)	51	NA	NA
WP_005015810.1|164894_165845_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929659.1|167288_168191_-	YgcG family protein	NA	NA	NA	NA	NA
WP_003815889.1|168168_168798_-	LemA family protein	NA	NA	NA	NA	NA
WP_010929660.1|169080_170511_+	DEAD/DEAH box helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	29.8	5.8e-44
WP_010929661.1|170544_171174_+	LysE family transporter	NA	NA	NA	NA	NA
WP_003815895.1|171222_172830_+	peptide chain release factor 3	NA	A0A2K9L6L3	Tupanvirus	37.8	9.3e-14
WP_010929663.1|172854_173538_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815898.1|173619_174096_-	bacterioferritin	NA	NA	NA	NA	NA
WP_010929591.1|174302_175253_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929664.1|176368_176896_+	META domain-containing protein	NA	NA	NA	NA	NA
WP_010929665.1|176987_177803_+	META and DUF4377 domain-containing protein	NA	NA	NA	NA	NA
WP_003808370.1|177863_178598_+	sulfurtransferase	NA	NA	NA	NA	NA
WP_010929666.1|178635_180714_-|tRNA	methionine--tRNA ligase	tRNA	A0A1V0SHR2	Klosneuvirus	23.6	1.5e-27
WP_003808374.1|180963_181236_-	hypothetical protein	NA	NA	NA	NA	NA
WP_033446322.1|181337_182423_+	iron-sulfur cluster carrier protein ApbC	NA	NA	NA	NA	NA
WP_010929668.1|182426_184331_+	BamA/TamA family outer membrane protein	NA	NA	NA	NA	NA
WP_014486044.1|184327_188002_+	translocation/assembly module TamB domain-containing protein	NA	NA	NA	NA	NA
WP_010929670.1|188062_188626_+	dCTP deaminase	NA	S5VM63	Pseudomonas_phage	75.3	2.6e-72
WP_003808385.1|188633_189056_-	VOC family protein	NA	NA	NA	NA	NA
WP_010929671.1|189083_189503_-	VOC family protein	NA	NA	NA	NA	NA
WP_076879599.1|189531_190005_-	GNAT family N-acetyltransferase	NA	Q9AZG4	Lactococcus_phage	31.1	2.2e-11
WP_003808391.1|190104_190602_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003808393.1|190756_193027_+	arginine/lysine/ornithine decarboxylase	NA	NA	NA	NA	NA
WP_010929672.1|193075_194308_+	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010929591.1|194406_195357_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929673.1|195459_196095_+	superoxide dismutase	NA	Q56AR7	Bacillus_thuringiensis_phage	73.8	2.8e-83
WP_019248671.1|196091_196985_+	ZIP family metal transporter	NA	NA	NA	NA	NA
WP_010929675.1|197379_198480_+	glycine cleavage system aminomethyltransferase GcvT	NA	NA	NA	NA	NA
WP_010929676.1|198561_198936_+	glycine cleavage system protein GcvH	NA	NA	NA	NA	NA
WP_010929677.1|198995_201860_+	aminomethyl-transferring glycine dehydrogenase	NA	E3SN07	Prochlorococcus_phage	51.4	1.2e-261
WP_010929678.1|202004_202745_-	FadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929679.1|202814_204026_+	CoA transferase	NA	NA	NA	NA	NA
WP_010929680.1|204054_205023_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931070.1|205636_206587_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929699.1|206743_207067_+	phosphate starvation-inducible protein	NA	NA	NA	NA	NA
WP_023853200.1|207171_208212_-	cyclase family protein	NA	NA	NA	NA	NA
WP_010929697.1|208217_208997_-	3-oxoadipate enol-lactonase	NA	NA	NA	NA	NA
WP_003807672.1|209042_209339_-	YciI family protein	NA	NA	NA	NA	NA
WP_003807674.1|209364_209640_-	muconolactone Delta-isomerase	NA	NA	NA	NA	NA
WP_003819086.1|209696_210341_-	CoA transferase subunit B	NA	NA	NA	NA	NA
WP_010929696.1|210340_211027_-	3-oxoacid CoA-transferase subunit A	NA	NA	NA	NA	NA
WP_010929695.1|211156_212008_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929694.1|212058_212784_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010929693.1|212815_214165_-	short-chain fatty acid transporter	NA	NA	NA	NA	NA
WP_010929692.1|214276_215209_-	3-hydroxyacyl-CoA dehydrogenase family protein	NA	NA	NA	NA	NA
WP_033455792.1|215666_218462_-|protease	serine protease autotransporter SphB1	protease	NA	NA	NA	NA
WP_010929690.1|219055_221998_-	phosphoenolpyruvate carboxylase	NA	NA	NA	NA	NA
WP_010929689.1|222069_222789_+	7-cyano-7-deazaguanine synthase QueC	NA	A0A0A0RPC6	Escherichia_phage	43.9	8.0e-50
WP_010929688.1|222827_223376_-	N-acetyltransferase	NA	A0A2H4J136	uncultured_Caudovirales_phage	41.7	1.2e-21
WP_010929687.1|223530_224430_+	virginiamycin B lyase	NA	NA	NA	NA	NA
WP_005012808.1|224454_225405_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 4
NZ_CP010255	Bordetella pertussis strain I480 chromosome, complete genome	4106388	233337	286925	4106388	transposase,protease,tRNA	Bacillus_phage(25.0%)	48	NA	NA
WP_005012067.1|233337_234288_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010927663.1|234374_235325_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930742.1|235321_236272_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929700.1|236370_237168_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_003814363.1|238117_238528_+	carboxymuconolactone decarboxylase family protein	NA	NA	NA	NA	NA
WP_003814358.1|239549_240293_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814356.1|240336_241380_-	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003814355.1|241550_243653_+	TRAP transporter large permease subunit	NA	NA	NA	NA	NA
WP_003814351.1|245063_246020_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929701.1|246038_246530_-	2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase	NA	NA	NA	NA	NA
WP_010929702.1|246526_247882_-	polynucleotide adenylyltransferase PcnB	NA	A0A1B1IVF3	uncultured_Mediterranean_phage	36.8	3.4e-25
WP_010929703.1|247882_248581_-	HAD-IB family hydrolase	NA	NA	NA	NA	NA
WP_010929704.1|248577_249279_-	DnaA regulatory inactivator Hda	NA	NA	NA	NA	NA
WP_003814339.1|249531_250581_+	phosphoribosylformylglycinamidine cyclo-ligase	NA	Q58MH8	Prochlorococcus_phage	43.6	5.6e-68
WP_003814337.1|250686_251628_-|tRNA	tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA	tRNA	NA	NA	NA	NA
WP_010929705.1|251624_253514_-	DNA mismatch repair endonuclease MutL	NA	A0A1B2LRQ5	Wolbachia_phage	32.8	3.3e-79
WP_003814332.1|253600_254239_+	VTT domain-containing protein	NA	NA	NA	NA	NA
WP_019247543.1|254381_255767_-	N-acetylmuramoyl-L-alanine amidase	NA	A0A2H4JCM7	uncultured_Caudovirales_phage	30.3	4.5e-17
WP_010929706.1|255697_256234_-|tRNA	bifunctional alanine racemase/tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE	tRNA	NA	NA	NA	NA
WP_010929707.1|256385_257777_+	class II fumarate hydratase	NA	NA	NA	NA	NA
WP_010929708.1|257793_258774_-	AEC family transporter	NA	NA	NA	NA	NA
WP_003814324.1|258909_259893_+	tripartite tricarboxylate transporter substrate binding protein BugE	NA	NA	NA	NA	NA
WP_010929709.1|259957_260857_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814321.1|260963_262718_+	gamma-glutamyltransferase	NA	NA	NA	NA	NA
WP_010929710.1|262725_263850_-	CoA transferase	NA	NA	NA	NA	NA
WP_010929711.1|263863_264844_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_005012067.1|265574_266525_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929712.1|267084_267630_+	GbsR/MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929713.1|267713_269333_+	cytochrome d ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
WP_004567834.1|269348_270503_+	cytochrome d ubiquinol oxidase subunit II	NA	NA	NA	NA	NA
WP_003817696.1|270516_270642_+	cytochrome bd-I oxidase subunit CydX	NA	NA	NA	NA	NA
WP_010929714.1|270638_272390_+	thiol reductant ABC exporter subunit CydD	NA	W8CYL7	Bacillus_phage	23.8	3.4e-09
WP_010929715.1|272386_274066_+	thiol reductant ABC exporter subunit CydC	NA	W8CYL7	Bacillus_phage	27.6	3.6e-16
WP_010929716.1|274128_274677_+	adenine phosphoribosyltransferase	NA	A0A1V0SKE5	Klosneuvirus	43.1	1.3e-28
WP_010929717.1|275819_276098_+	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|277141_278092_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_173651708.1|278109_278256_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929718.1|278369_278531_+	DUF4224 domain-containing protein	NA	NA	NA	NA	NA
WP_010929719.1|278538_278679_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815821.1|279197_279647_-|protease	ClpXP protease specificity-enhancing factor	protease	NA	NA	NA	NA
WP_003815819.1|279656_280268_-	glutathione S-transferase N-terminal domain-containing protein	NA	NA	NA	NA	NA
WP_019247426.1|280426_281281_-	cytochrome c1	NA	NA	NA	NA	NA
WP_003815816.1|281300_282683_-	cytochrome bc complex cytochrome b subunit	NA	NA	NA	NA	NA
WP_003815815.1|282747_283389_-	ubiquinol-cytochrome c reductase iron-sulfur subunit	NA	NA	NA	NA	NA
WP_010929721.1|283528_283987_+	large conductance mechanosensitive channel protein MscL	NA	NA	NA	NA	NA
WP_010927226.1|284011_284788_-	Nif3-like dinuclear metal center hexameric protein	NA	NA	NA	NA	NA
WP_014906092.1|284841_285978_+	trypsin-like peptidase domain-containing protein	NA	W5SAB9	Pithovirus	31.2	1.2e-07
WP_005015810.1|285974_286925_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 5
NZ_CP010255	Bordetella pertussis strain I480 chromosome, complete genome	4106388	390858	448367	4106388	transposase	Orpheovirus(14.29%)	50	NA	NA
WP_005012067.1|390858_391809_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010927231.1|391945_392863_+	reductase	NA	NA	NA	NA	NA
WP_003815842.1|392859_393108_+	glutaredoxin family protein	NA	NA	NA	NA	NA
WP_003815840.1|393104_394310_+	CoA transferase	NA	NA	NA	NA	NA
WP_014486045.1|394382_395378_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_014486046.1|395400_396621_-	CoA transferase	NA	NA	NA	NA	NA
WP_014486047.1|396617_397262_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019248476.1|398992_399802_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_014486048.1|400106_401060_+	thioredoxin-disulfide reductase	NA	A0A2I2L5E1	Orpheovirus	42.5	5.6e-59
WP_014486049.1|401158_402142_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014486050.1|402068_402770_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_014486051.1|402818_403589_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_019247259.1|403585_404764_-	CoA transferase	NA	NA	NA	NA	NA
WP_014486052.1|404931_406638_-	thiamine pyrophosphate-requiring protein	NA	NA	NA	NA	NA
WP_014486053.1|406634_407531_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_014486054.1|407571_409161_-	rhodanese homology domain-containing protein	NA	NA	NA	NA	NA
WP_003807867.1|409210_410203_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003807865.1|410271_410871_-	hypothetical protein	NA	NA	NA	NA	NA
WP_014486055.1|411331_412312_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929577.1|412387_413338_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_047122777.1|413426_414341_+	DMT family transporter	NA	NA	NA	NA	NA
WP_010929782.1|414337_414997_+	LysE family translocator	NA	NA	NA	NA	NA
WP_003814709.1|415086_416010_+	alpha/beta fold hydrolase	NA	A0A1C9C5K3	Heterosigma_akashiwo_virus	27.2	4.8e-07
WP_010929783.1|416015_416471_-	multidrug/biocide efflux PACE transporter	NA	NA	NA	NA	NA
WP_010929784.1|416467_417571_-	ChbG/HpnK family deacetylase	NA	NA	NA	NA	NA
WP_157734656.1|417529_417799_+	GtrA family protein	NA	NA	NA	NA	NA
WP_010927086.1|417758_419378_-	glycosyltransferase family 39 protein	NA	NA	NA	NA	NA
WP_003814720.1|419374_420433_-	glycosyltransferase family 2 protein	NA	I1TED8	Salmonella_phage	40.5	2.8e-59
WP_033446199.1|420562_421057_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_022997984.1|421149_422127_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929785.1|422322_423528_+	sodium/glutamate symporter	NA	NA	NA	NA	NA
WP_010929786.1|423524_425036_+	TAXI family TRAP transporter solute-binding subunit	NA	NA	NA	NA	NA
WP_003814726.1|425051_426365_-	short-chain fatty acid transporter	NA	NA	NA	NA	NA
WP_003814728.1|426555_426735_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003814730.1|427144_427879_-	DNA polymerase III subunit epsilon	NA	A0A1X9SH08	Bradyrhizobium_phage	43.8	1.4e-41
WP_010929577.1|430323_431274_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247421.1|431405_431804_-	GTP-binding protein	NA	E4ZFJ7	Streptococcus_phage	44.3	9.0e-19
WP_003814701.1|432214_432685_-	universal stress protein	NA	NA	NA	NA	NA
WP_003820700.1|432773_433118_-	TIGR01244 family phosphatase	NA	NA	NA	NA	NA
WP_010929788.1|433217_434618_-	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
WP_010929789.1|436406_436925_-	MgtC/SapB family protein	NA	G3MA03	Bacillus_virus	38.9	2.1e-12
WP_003814694.1|437035_437791_+	TerC family protein	NA	A0A0R6PEZ3	Moraxella_phage	40.8	2.9e-42
WP_003814691.1|437986_439219_+	CoA transferase	NA	NA	NA	NA	NA
WP_010929791.1|439211_439997_+	crotonase/enoyl-CoA hydratase family protein	NA	NA	NA	NA	NA
WP_003814685.1|440063_441035_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003814681.1|441045_442023_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247419.1|442148_443321_+	acyl-CoA dehydrogenase family protein	NA	NA	NA	NA	NA
WP_010929793.1|443347_444376_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_003814674.1|444441_445635_+	acetyl-CoA C-acyltransferase	NA	NA	NA	NA	NA
WP_005012067.1|447416_448367_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 6
NZ_CP010255	Bordetella pertussis strain I480 chromosome, complete genome	4106388	590421	651611	4106388	transposase,protease	uncultured_Mediterranean_phage(40.0%)	56	NA	NA
WP_005013747.1|590421_591372_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023998122.1|591868_592738_+	phosphonate ABC transporter, permease protein PhnE	NA	NA	NA	NA	NA
WP_010931496.1|592734_593556_+	phosphonate ABC transporter, permease protein PhnE	NA	NA	NA	NA	NA
WP_019247235.1|593754_594246_+	CYTH domain-containing protein	NA	NA	NA	NA	NA
WP_019247236.1|594264_595338_+	CHAD domain-containing protein	NA	NA	NA	NA	NA
WP_023853086.1|595384_596488_-	signal recognition particle-docking protein FtsY	NA	NA	NA	NA	NA
WP_003808577.1|596563_597184_+	16S rRNA (guanine(966)-N(2))-methyltransferase RsmD	NA	NA	NA	NA	NA
WP_003808574.1|597204_597714_+	pantetheine-phosphate adenylyltransferase	NA	A0A1B1IVQ3	uncultured_Mediterranean_phage	42.1	1.2e-28
WP_003808570.1|597768_598020_+	YfhL family 4Fe-4S dicluster ferredoxin	NA	A0A1B1IWY9	uncultured_Mediterranean_phage	53.4	1.6e-18
WP_010931494.1|598083_599217_+	benzoate/H(+) symporter BenE family transporter	NA	NA	NA	NA	NA
WP_003808567.1|599224_599611_-	MOSC N-terminal beta barrel domain-containing protein	NA	NA	NA	NA	NA
WP_010931493.1|599607_602127_-	AsmA family protein	NA	NA	NA	NA	NA
WP_003808563.1|602555_602894_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003808562.1|602890_603397_+	SRPBCC family protein	NA	NA	NA	NA	NA
WP_010931492.1|603458_604259_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931491.1|604369_605311_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931490.1|605404_606940_-	M81 family metallopeptidase	NA	NA	NA	NA	NA
WP_010931489.1|608619_610470_-	dipeptide ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	29.2	1.6e-17
WP_003808549.1|610473_611307_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931488.1|611306_612248_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931487.1|612499_613471_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931486.1|613612_615901_+	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
WP_003808542.1|616207_617116_+	TauD/TfdA family dioxygenase	NA	NA	NA	NA	NA
WP_010931485.1|617170_618136_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931484.1|618210_619872_+	thiamine pyrophosphate-binding protein	NA	NA	NA	NA	NA
WP_010931483.1|619943_620654_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_154698388.1|620620_620785_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|620802_621753_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814152.1|622451_622835_+	membrane protein	NA	NA	NA	NA	NA
WP_010927005.1|622892_623495_+	DUF2946 family protein	NA	NA	NA	NA	NA
WP_003820995.1|623512_623914_-	DoxX family protein	NA	NA	NA	NA	NA
WP_003814158.1|624047_624941_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931481.1|624937_625519_+	NUDIX hydrolase	NA	NA	NA	NA	NA
WP_003814165.1|626313_627048_+	arginyltransferase	NA	NA	NA	NA	NA
WP_010931480.1|627088_628138_+	quinone-dependent dihydroorotate dehydrogenase	NA	NA	NA	NA	NA
WP_003814172.1|628285_628864_-	TIGR01841 family phasin	NA	NA	NA	NA	NA
WP_010931479.1|629250_630228_+	tripartite tricarboxylate transporter substrate binding protein BugD	NA	NA	NA	NA	NA
WP_010931478.1|630321_634716_-	dermonecrotic toxin	NA	NA	NA	NA	NA
WP_003814178.1|634916_635765_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931477.1|635923_636736_-	competence/damage-inducible protein A	NA	NA	NA	NA	NA
WP_005015810.1|636791_637742_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931453.1|637840_638641_-	EI24 domain-containing protein	NA	NA	NA	NA	NA
WP_003814185.1|638702_639086_+	thioredoxin family protein	NA	NA	NA	NA	NA
WP_010931454.1|639097_640531_-	DEAD/DEAH box helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	34.4	1.5e-52
WP_003814188.1|640737_641067_-	AzlD domain-containing protein	NA	NA	NA	NA	NA
WP_010931455.1|641069_641819_-	AzlC family ABC transporter permease	NA	NA	NA	NA	NA
WP_010931456.1|642001_642922_+	branched-chain amino acid transaminase	NA	NA	NA	NA	NA
WP_003814195.1|642968_643181_+	zinc-finger domain-containing protein	NA	NA	NA	NA	NA
WP_010931457.1|643203_643626_+	nuclear transport factor 2 family protein	NA	NA	NA	NA	NA
WP_010931458.1|643642_644743_+	alpha/beta fold hydrolase	NA	NA	NA	NA	NA
WP_010931459.1|644839_646357_-|protease	M48 family metalloprotease	protease	NA	NA	NA	NA
WP_003814203.1|646432_647272_+	UTP--glucose-1-phosphate uridylyltransferase GalU	NA	A0A127AW70	Bacillus_phage	48.9	1.1e-66
WP_003814205.1|647293_648175_-	cytochrome c oxidase assembly protein	NA	NA	NA	NA	NA
WP_003814206.1|648256_649351_-	porin	NA	NA	NA	NA	NA
WP_076879617.1|649644_650595_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_041166340.1|650669_651611_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 7
NZ_CP010255	Bordetella pertussis strain I480 chromosome, complete genome	4106388	656935	703126	4106388	transposase,terminase,tail,tRNA	uncultured_Caudovirales_phage(18.18%)	51	NA	NA
WP_023995141.1|656935_657961_+|tRNA	tRNA dihydrouridine synthase DusB	tRNA	NA	NA	NA	NA
WP_003814221.1|658001_658241_+	DNA-binding protein	NA	NA	NA	NA	NA
WP_010931464.1|658310_659900_+	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase	NA	Q58MG4	Prochlorococcus_phage	47.2	8.7e-65
WP_010931465.1|659899_660448_+	crossover junction endodeoxyribonuclease RuvC	NA	NA	NA	NA	NA
WP_003814226.1|660528_661101_+	Holliday junction branch migration protein RuvA	NA	NA	NA	NA	NA
WP_010927008.1|661119_662031_-	complex I NDUFA9 subunit family protein	NA	NA	NA	NA	NA
WP_003814230.1|662104_663073_-	threo-3-hydroxy-L-aspartate ammonia-lyase	NA	NA	NA	NA	NA
WP_010931466.1|663195_664269_+	Holliday junction branch migration DNA helicase RuvB	NA	A0A127AWE7	Bacillus_phage	25.7	2.3e-08
WP_010931467.1|664273_666094_-	DNA helicase RecQ	NA	L7RCS0	Acanthamoeba_polyphaga_moumouvirus	35.3	3.1e-74
WP_010930800.1|666170_667121_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_033446132.1|667209_667545_+	ASCH domain-containing protein	NA	NA	NA	NA	NA
WP_003819076.1|667678_668329_+	carbonic anhydrase	NA	NA	NA	NA	NA
WP_010931468.1|668350_669769_-	amidase	NA	NA	NA	NA	NA
WP_019248554.1|669838_670594_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019247734.1|670562_671321_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010931471.1|671331_672213_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010931472.1|672229_672937_+	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	25.4	8.2e-07
WP_010931473.1|672939_673698_+	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	24.4	4.4e-14
WP_010931474.1|673907_675650_+	nitrite/sulfite reductase	NA	NA	NA	NA	NA
WP_010925795.1|675642_676167_+	DUF934 domain-containing protein	NA	NA	NA	NA	NA
WP_010931475.1|676206_677001_-	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019248926.1|677168_678242_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|678340_679291_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247378.1|679542_679749_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931451.1|679820_680432_-	S24 family peptidase	NA	NA	NA	NA	NA
WP_023853179.1|680986_681238_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_161633094.1|681230_681920_+	hypothetical protein	NA	NA	NA	NA	NA
WP_023853183.1|681937_682159_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|682176_683127_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247942.1|683766_684252_+|transposase	transposase	transposase	C7U0W1	Enterobacteria_phage	61.5	7.3e-39
WP_010931447.1|684238_685516_+|terminase	terminase large subunit	terminase	A0A1B1P9C9	Acinetobacter_phage	64.7	2.4e-150
WP_010931446.1|685518_686937_+	DUF4055 domain-containing protein	NA	R9TF43	Synechococcus_phage	42.1	2.2e-99
WP_010931445.1|686965_688021_+	hypothetical protein	NA	A0A0H5BBX3	Pseudomonas_phage	50.6	2.6e-97
WP_010931444.1|688026_688269_+	hypothetical protein	NA	A0A0H5AUE5	Pseudomonas_phage	53.2	5.6e-16
WP_010931443.1|688391_688994_+	hypothetical protein	NA	R9TF81	Synechococcus_phage	43.6	7.9e-27
WP_005012808.1|689422_690373_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931442.1|691047_691299_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247789.1|691361_691844_+	hypothetical protein	NA	A0A2H4JE38	uncultured_Caudovirales_phage	37.1	1.8e-13
WP_010931440.1|691845_692046_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931439.1|692045_692441_+	hypothetical protein	NA	A0A2D2W284	Stenotrophomonas_phage	35.0	7.8e-07
WP_010931438.1|692437_692836_+	hypothetical protein	NA	I6PCW1	Cronobacter_phage	38.0	4.2e-16
WP_010931437.1|692832_693255_+	DUF4128 domain-containing protein	NA	NA	NA	NA	NA
WP_010931436.1|693262_693763_+	HNH endonuclease	NA	A0A1I9SEX5	Klebsiella_phage	45.1	4.4e-31
WP_010931435.1|694017_694536_+|tail	phage tail protein	tail	A0A1S5R1H0	Pseudomonas_phage	38.3	5.4e-24
WP_003813412.1|694545_694875_+|tail	phage tail assembly chaperone	tail	A0A2H4J121	uncultured_Caudovirales_phage	44.0	2.9e-15
WP_010931434.1|694892_695183_+	DUF1799 domain-containing protein	NA	A0A2H4JBP7	uncultured_Caudovirales_phage	45.2	3.7e-14
WP_010931433.1|695208_697821_+|tail	phage tail tape measure protein	tail	A0A2H4J107	uncultured_Caudovirales_phage	38.6	4.9e-105
WP_010931432.1|697830_698190_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931431.1|698257_698791_+	DUF1833 family protein	NA	A5A3Q9	Burkholderia_phage	46.9	1.1e-40
WP_010931430.1|698787_699177_+	C40 family peptidase	NA	A0A0G3EYJ9	Achromobacter_phage	50.0	3.0e-35
WP_010931429.1|699169_703126_+	DUF1983 domain-containing protein	NA	A0A0B5A1N2	Achromobacter_phage	40.8	3.9e-215
>prophage 8
NZ_CP010255	Bordetella pertussis strain I480 chromosome, complete genome	4106388	709292	763222	4106388	transposase,tRNA	Planktothrix_phage(50.0%)	46	NA	NA
WP_003814636.1|709292_711023_+|tRNA	proline--tRNA ligase	tRNA	A0A2K9L3R9	Tupanvirus	29.4	4.6e-11
WP_010931419.1|711075_711504_+	tol-pal system-associated acyl-CoA thioesterase	NA	NA	NA	NA	NA
WP_003814641.1|711506_712187_+	protein TolQ	NA	NA	NA	NA	NA
WP_003814643.1|712186_712645_+	protein TolR	NA	NA	NA	NA	NA
WP_010931418.1|712681_713656_+	cell envelope integrity protein TolA	NA	NA	NA	NA	NA
WP_010931417.1|713672_714989_+	Tol-Pal system protein TolB	NA	NA	NA	NA	NA
WP_003814650.1|715020_715518_+	peptidoglycan-associated lipoprotein Pal	NA	NA	NA	NA	NA
WP_003814652.1|715604_716294_+	tol-pal system protein YbgF	NA	NA	NA	NA	NA
WP_010931416.1|716293_717343_+	iron ABC transporter permease	NA	NA	NA	NA	NA
WP_003814657.1|717339_718134_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.6	2.4e-15
WP_019247923.1|718302_718653_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247922.1|718628_719186_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_005012808.1|720315_721266_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929184.1|723403_724633_+	spore maturation protein	NA	NA	NA	NA	NA
WP_003814419.1|724635_726078_-	pyruvate kinase	NA	NA	NA	NA	NA
WP_010931414.1|726182_727328_+	glycerate kinase	NA	W6LM47	Streptococcus_phage	42.2	1.7e-41
WP_010931413.1|727359_728157_-	16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA	NA	NA	NA	NA	NA
WP_010931412.1|728181_729741_-	chaperone SurA	NA	NA	NA	NA	NA
WP_010931411.1|729737_732110_-	LPS-assembly protein LptD	NA	NA	NA	NA	NA
WP_010931410.1|732219_733323_+	phosphotransferase	NA	NA	NA	NA	NA
WP_010931409.1|733322_734015_+	nucleotidyltransferase family protein	NA	NA	NA	NA	NA
WP_003814436.1|734158_734860_+	membrane protein	NA	NA	NA	NA	NA
WP_003814437.1|734844_735222_-	4a-hydroxytetrahydrobiopterin dehydratase	NA	NA	NA	NA	NA
WP_005012067.1|735953_736904_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814441.1|737063_737936_-	oxaloacetate decarboxylase	NA	NA	NA	NA	NA
WP_003814443.1|738276_738495_+	DUF1059 domain-containing protein	NA	NA	NA	NA	NA
WP_019247242.1|738534_739914_-	aminotransferase class III-fold pyridoxal phosphate-dependent enzyme	NA	NA	NA	NA	NA
WP_010929976.1|739955_741353_-	amidase family protein	NA	NA	NA	NA	NA
WP_010927038.1|741392_743045_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.8	6.0e-16
WP_010929977.1|743048_743933_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010929978.1|743932_744874_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010929979.1|744952_746572_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929980.1|746738_747554_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814459.1|747621_748191_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005013747.1|748191_749142_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814461.1|749796_750894_+	carboxynorspermidine decarboxylase	NA	NA	NA	NA	NA
WP_003814462.1|750927_752193_+	saccharopine dehydrogenase family protein	NA	NA	NA	NA	NA
WP_010929591.1|752350_753301_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929982.1|753544_754135_+	polyisoprenoid-binding protein	NA	NA	NA	NA	NA
WP_010929983.1|754150_756595_-	TonB-dependent siderophore receptor	NA	NA	NA	NA	NA
WP_003814467.1|756714_757686_-	FecR family protein	NA	NA	NA	NA	NA
WP_023852739.1|757817_758342_+	sigma-70 family RNA polymerase sigma factor	NA	NA	NA	NA	NA
WP_005012067.1|758301_759252_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929984.1|759473_761669_-	DUF1156 domain-containing protein	NA	NA	NA	NA	NA
WP_010929985.1|761741_762170_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_005012808.1|762271_763222_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 9
NZ_CP010255	Bordetella pertussis strain I480 chromosome, complete genome	4106388	854100	903364	4106388	transposase,holin	Vibrio_phage(33.33%)	40	NA	NA
WP_010929591.1|854100_855051_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247352.1|855068_855623_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003813949.1|855624_856059_+	PaaI family thioesterase	NA	NA	NA	NA	NA
WP_003813951.1|856055_856490_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003813952.1|856473_857277_-	phosphatase PAP2 family protein	NA	NA	NA	NA	NA
WP_003813954.1|857293_858109_-	metallophosphoesterase	NA	NA	NA	NA	NA
WP_019248500.1|858105_858921_-	diacylglycerol kinase	NA	NA	NA	NA	NA
WP_010930033.1|859067_859769_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003813960.1|859796_861755_-|holin	choline BCCT transporter BetT	holin	A0A2I7QNT1	Vibrio_phage	30.3	8.0e-28
WP_005013747.1|861837_862788_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930032.1|863008_863677_+	transcriptional regulator	NA	NA	NA	NA	NA
WP_010930031.1|863800_864907_+	efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
WP_010930030.1|864919_868033_+	MexW/MexI family multidrug efflux RND transporter permease subunit	NA	S5VTK5	Leptospira_phage	21.5	4.5e-57
WP_010930029.1|868029_869523_+	efflux transporter outer membrane subunit	NA	NA	NA	NA	NA
WP_010926969.1|869537_870209_+	transcriptional regulator	NA	NA	NA	NA	NA
WP_003813974.1|870252_870747_-	azurin	NA	NA	NA	NA	NA
WP_010930027.1|870887_871535_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_023853163.1|871638_873687_+	hydantoinase/oxoprolinase family protein	NA	NA	NA	NA	NA
WP_010930025.1|873683_875696_+	hydantoinase B/oxoprolinase family protein	NA	NA	NA	NA	NA
WP_010930024.1|875721_877056_+	FAD-binding oxidoreductase	NA	NA	NA	NA	NA
WP_003813981.1|877164_878157_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003813982.1|878223_880308_-	rhodanese-like domain-containing protein	NA	NA	NA	NA	NA
WP_010930023.1|880332_881304_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930022.1|881432_882464_-	succinylglutamate desuccinylase/aspartoacylase family protein	NA	NA	NA	NA	NA
WP_010930021.1|882467_883619_-	cystathionine beta-lyase	NA	NA	NA	NA	NA
WP_076879542.1|883789_884713_+	transcriptional regulator LrhA	NA	NA	NA	NA	NA
WP_003813987.1|884790_885615_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_023994644.1|885811_886828_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003813988.1|887024_888008_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930019.1|889606_890995_-	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_003813991.1|891025_892015_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003813992.1|892125_893358_-	methylaspartate ammonia-lyase	NA	NA	NA	NA	NA
WP_003813993.1|893639_894440_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930018.1|894462_896694_-|holin	choline BCCT transporter BetT	holin	NA	NA	NA	NA
WP_010930017.1|897481_897928_-	preprotein translocase subunit SecG	NA	NA	NA	NA	NA
WP_003813996.1|897949_898696_-	triose-phosphate isomerase	NA	NA	NA	NA	NA
WP_003813997.1|898839_899817_-	NAD(P)H-quinone oxidoreductase	NA	NA	NA	NA	NA
WP_010930016.1|900450_901062_+	PIN domain-containing protein	NA	K4HZX4	Acidithiobacillus_phage	32.5	3.3e-12
WP_003813999.1|901055_902273_-	threonine ammonia-lyase	NA	NA	NA	NA	NA
WP_005013747.1|902413_903364_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 10
NZ_CP010255	Bordetella pertussis strain I480 chromosome, complete genome	4106388	912976	958592	4106388	transposase	Bacillus_phage(33.33%)	40	NA	NA
WP_005012067.1|912976_913927_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930051.1|913923_915756_-	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	26.4	1.3e-27
WP_010930052.1|916154_916814_+	thiopurine S-methyltransferase	NA	NA	NA	NA	NA
WP_023852837.1|916907_917054_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003809770.1|917162_917330_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930054.1|917341_918022_-	DUF3313 domain-containing protein	NA	NA	NA	NA	NA
WP_010930055.1|918303_919020_+	flagellar brake protein	NA	NA	NA	NA	NA
WP_010930056.1|919034_920336_-	phospholipase A	NA	NA	NA	NA	NA
WP_029444137.1|922480_925369_+	HD domain-containing protein	NA	NA	NA	NA	NA
WP_010930057.1|925592_926945_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_004568140.1|926973_927495_+	acetyl-CoA carboxylase biotin carboxyl carrier protein	NA	NA	NA	NA	NA
WP_003819989.1|927491_928946_+	carboxylase	NA	NA	NA	NA	NA
WP_023852826.1|928980_929229_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247557.1|929334_930210_+	amidohydrolase	NA	NA	NA	NA	NA
WP_010930060.1|930235_931291_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930061.1|931303_932095_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930062.1|932127_933498_+	acetyl-CoA carboxylase biotin carboxylase subunit	NA	NA	NA	NA	NA
WP_005012067.1|934674_935625_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|935723_936674_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930064.1|936726_936948_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003810832.1|937107_937320_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003810835.1|937439_938558_+	mannose-6-phosphate isomerase	NA	NA	NA	NA	NA
WP_003810839.1|939063_939315_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930066.1|939427_940378_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003810840.1|940374_940758_-	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA	NA
WP_023852913.1|940812_942627_-	ABC transporter ATP-binding protein/permease	NA	W8CYL7	Bacillus_phage	27.9	5.7e-44
WP_010930068.1|942776_943604_+	aldo/keto reductase	NA	A0A2H4PQR8	Staphylococcus_phage	47.4	1.7e-67
WP_010930069.1|943649_944630_+	aldo/keto reductase	NA	NA	NA	NA	NA
WP_003810850.1|944626_944839_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003810851.1|944835_946017_-	PepSY domain-containing protein	NA	NA	NA	NA	NA
WP_019248496.1|946180_946915_+	metallophosphoesterase	NA	A0A2H4J0P0	uncultured_Caudovirales_phage	49.2	1.9e-62
WP_010930071.1|946916_949529_-	PBP1A family penicillin-binding protein	NA	NA	NA	NA	NA
WP_003810859.1|949664_951578_-	S9 family peptidase	NA	NA	NA	NA	NA
WP_010930072.1|952193_952604_-	PaaI family thioesterase	NA	NA	NA	NA	NA
WP_003810865.1|952701_953787_+	DNA polymerase IV	NA	NA	NA	NA	NA
WP_005012067.1|953885_954836_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930088.1|954832_955807_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003821497.1|955931_956843_+	LysR family transcriptional regulator	NA	Q6JIH3	Burkholderia_virus	27.6	4.4e-05
WP_004566317.1|957119_957512_-	type II toxin-antitoxin system HicB family antitoxin	NA	A0A0R6PJ17	Moraxella_phage	45.0	4.8e-25
WP_005012808.1|957641_958592_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 11
NZ_CP010255	Bordetella pertussis strain I480 chromosome, complete genome	4106388	978014	1048281	4106388	transposase	Streptococcus_phage(14.29%)	57	NA	NA
WP_005012067.1|978014_978965_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014486062.1|979045_979957_+	cysteine synthase CysM	NA	A0A1X9I5K7	Streptococcus_phage	38.8	8.0e-47
WP_010930108.1|980017_981163_-	lytic murein transglycosylase B	NA	NA	NA	NA	NA
WP_003821521.1|981182_982097_+	histone deacetylase family protein	NA	A0A2K9KZC4	Tupanvirus	34.7	9.8e-45
WP_010930110.1|982168_982918_+	electron transfer flavoprotein subunit beta/FixA family protein	NA	NA	NA	NA	NA
WP_010930111.1|982917_983847_+	electron transfer flavoprotein subunit alpha	NA	NA	NA	NA	NA
WP_003821527.1|984090_985917_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_003813333.1|985999_986641_+	peroxiredoxin	NA	NA	NA	NA	NA
WP_170954292.1|986863_987865_+	sulfate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930112.1|989701_990766_+	sulfate ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	30.3	3.8e-24
WP_010930113.1|991563_992472_+	sulfate adenylyltransferase subunit CysD	NA	NA	NA	NA	NA
WP_023852693.1|993959_995234_+	PA0069 family radical SAM protein	NA	NA	NA	NA	NA
WP_023852686.1|995387_995768_+	hypothetical protein	NA	NA	NA	NA	NA
WP_014905652.1|995775_996648_-	EamA family transporter	NA	NA	NA	NA	NA
WP_003813315.1|996953_997334_+	50S ribosomal protein L19	NA	NA	NA	NA	NA
WP_003813314.1|997544_998270_+	CoA pyrophosphatase	NA	NA	NA	NA	NA
WP_005012067.1|998365_999316_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930118.1|999420_1000470_+	NADP(H)-dependent aldo-keto reductase	NA	NA	NA	NA	NA
WP_010929632.1|1000607_1001624_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010926548.1|1003132_1003705_-	chorismate lyase	NA	NA	NA	NA	NA
WP_010930119.1|1003764_1004496_+	rRNA pseudouridine synthase	NA	NA	NA	NA	NA
WP_029443805.1|1004547_1005465_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930121.1|1006272_1009452_+	efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_014486063.1|1009448_1010831_+	efflux transporter outer membrane subunit	NA	NA	NA	NA	NA
WP_010930123.1|1010900_1011152_-	GlsB/YeaQ/YmgE family stress response membrane protein	NA	NA	NA	NA	NA
WP_010930124.1|1011297_1011912_-	SCO family protein	NA	NA	NA	NA	NA
WP_019248379.1|1012098_1014213_-	M3 family metallopeptidase	NA	NA	NA	NA	NA
WP_003811948.1|1014288_1015140_-	bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD	NA	A0A249XZQ2	Enterococcus_phage	39.8	2.1e-33
WP_010930126.1|1015136_1015763_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_003817147.1|1015759_1017514_-	PAS domain S-box protein	NA	NA	NA	NA	NA
WP_010930127.1|1017806_1020512_+	pyruvate dehydrogenase (acetyl-transferring), homodimeric type	NA	NA	NA	NA	NA
WP_010930128.1|1020524_1022186_+	dihydrolipoyllysine-residue acetyltransferase	NA	NA	NA	NA	NA
WP_010930129.1|1022198_1023989_+	dihydrolipoyl dehydrogenase	NA	A0A2K5B2C5	Erysipelothrix_phage	25.2	2.4e-39
WP_003817151.1|1024210_1025386_-	FliC/FljB family flagellin	NA	NA	NA	NA	NA
WP_010929584.1|1025428_1026379_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930130.1|1026477_1027218_-	16S rRNA (uracil(1498)-N(3))-methyltransferase	NA	NA	NA	NA	NA
WP_010930131.1|1027412_1029449_+	transketolase	NA	NA	NA	NA	NA
WP_010930132.1|1029466_1030477_+	type I glyceraldehyde-3-phosphate dehydrogenase	NA	NA	NA	NA	NA
WP_010930133.1|1030594_1031788_+	phosphoglycerate kinase	NA	NA	NA	NA	NA
WP_010930134.1|1031817_1032591_-	enoyl-ACP reductase FabI	NA	NA	NA	NA	NA
WP_010930135.1|1032587_1033778_-	acetate kinase	NA	NA	NA	NA	NA
WP_003809454.1|1033803_1034742_-	phosphate acetyltransferase	NA	NA	NA	NA	NA
WP_010930136.1|1034738_1037087_-	DUF3141 domain-containing protein	NA	NA	NA	NA	NA
WP_010930137.1|1037241_1037883_-	glutathione transferase	NA	NA	NA	NA	NA
WP_023853531.1|1037986_1039120_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994624.1|1039212_1039365_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930138.1|1039396_1039945_-	DinB family protein	NA	NA	NA	NA	NA
WP_003819814.1|1039963_1040449_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_010930139.1|1040626_1041565_+	DnaJ domain-containing protein	NA	A0A0P0YMJ9	Yellowstone_lake_phycodnavirus	24.1	5.6e-11
WP_003809467.1|1041567_1041885_+	MerR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247197.1|1041930_1042875_+	AzlC family ABC transporter permease	NA	NA	NA	NA	NA
WP_010930141.1|1044555_1045206_+	molybdopterin adenylyltransferase	NA	NA	NA	NA	NA
WP_003809479.1|1045259_1045595_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930142.1|1045591_1046452_+	M23 family metallopeptidase	NA	A0A292GJG6	Xanthomonas_phage	36.1	2.6e-15
WP_003819817.1|1046468_1046750_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003809486.1|1046823_1047087_-	translation initiation factor IF-1	NA	NA	NA	NA	NA
WP_005012067.1|1047330_1048281_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 12
NZ_CP010255	Bordetella pertussis strain I480 chromosome, complete genome	4106388	1060499	1117881	4106388	transposase,protease,tRNA,holin	uncultured_Mediterranean_phage(37.5%)	48	NA	NA
WP_010931363.1|1060499_1061516_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010930148.1|1062304_1063354_+	aldo/keto reductase	NA	NA	NA	NA	NA
WP_014486064.1|1063350_1064994_-	apolipoprotein N-acyltransferase	NA	NA	NA	NA	NA
WP_010930149.1|1064990_1065878_-	CBS domain-containing protein	NA	NA	NA	NA	NA
WP_003809396.1|1066018_1066492_-	rRNA maturation RNase YbeY	NA	NA	NA	NA	NA
WP_010930151.1|1066481_1067504_-	PhoH family protein	NA	A0A0S0MVD6	Pseudomonas_phage	45.4	8.7e-50
WP_015041211.1|1067500_1068928_-|tRNA	tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB	tRNA	NA	NA	NA	NA
WP_010931363.1|1069865_1070882_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003809411.1|1071214_1072150_-	protein translocase subunit SecF	NA	A0A1B1IVP7	uncultured_Mediterranean_phage	35.5	3.0e-41
WP_010930154.1|1072199_1074080_-	protein translocase subunit SecD	NA	NA	NA	NA	NA
WP_003809416.1|1074146_1074491_-	preprotein translocase subunit YajC	NA	A0A1B1IVR5	uncultured_Mediterranean_phage	40.4	1.0e-10
WP_010930155.1|1074635_1075772_-|tRNA	tRNA guanosine(34) transglycosylase Tgt	tRNA	A0A1B1IVQ4	uncultured_Mediterranean_phage	44.4	1.9e-85
WP_023853534.1|1075768_1076842_-|tRNA	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	tRNA	NA	NA	NA	NA
WP_003809423.1|1076999_1078436_+	D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase	NA	NA	NA	NA	NA
WP_010930157.1|1078526_1079168_+	uracil phosphoribosyltransferase	NA	NA	NA	NA	NA
WP_023853536.1|1079503_1080520_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_019248433.1|1080852_1083600_+	pertactin autotransporter	NA	NA	NA	NA	NA
WP_010930160.1|1083666_1085088_-	uroporphyrinogen-III C-methyltransferase	NA	NA	NA	NA	NA
WP_003809431.1|1085351_1086068_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003809432.1|1086152_1086470_+	DUF883 domain-containing protein	NA	NA	NA	NA	NA
WP_003819794.1|1086510_1086924_+|holin	phage holin family protein	holin	NA	NA	NA	NA
WP_010930161.1|1086925_1087285_+	hypothetical protein	NA	NA	NA	NA	NA
WP_023853525.1|1087327_1088872_-	4-hydroxy-3-polyprenylbenzoate decarboxylase	NA	NA	NA	NA	NA
WP_010930163.1|1088955_1089786_+	lytic transglycosylase domain-containing protein	NA	NA	NA	NA	NA
WP_010930164.1|1089820_1090975_-	pyridoxal phosphate-dependent aminotransferase	NA	NA	NA	NA	NA
WP_010930165.1|1091017_1091890_+	hypothetical protein	NA	NA	NA	NA	NA
WP_014486065.1|1092006_1094295_+	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
WP_003809441.1|1095501_1095966_+	barstar family protein	NA	NA	NA	NA	NA
WP_005013747.1|1095992_1096943_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_154698393.1|1096960_1097098_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930167.1|1097310_1098087_-	phosphate ABC transporter ATP-binding protein PstB	NA	G9BWD6	Planktothrix_phage	28.7	4.3e-17
WP_003809638.1|1098131_1098989_-	phosphate ABC transporter permease PstA	NA	NA	NA	NA	NA
WP_010930169.1|1099010_1100027_-	phosphate ABC transporter permease subunit PstC	NA	NA	NA	NA	NA
WP_014486066.1|1100161_1101202_-	phosphate ABC transporter substrate-binding protein PstS	NA	M4QHS4	Cyanophage	40.2	2.1e-51
WP_010930171.1|1101396_1103478_-	polyphosphate kinase 1	NA	NA	NA	NA	NA
WP_010930172.1|1103713_1105207_+	exopolyphosphatase	NA	NA	NA	NA	NA
WP_003809629.1|1105437_1106232_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_003819875.1|1106452_1107811_-	phosphoglucosamine mutase	NA	NA	NA	NA	NA
WP_010930173.1|1107807_1108650_-	dihydropteroate synthase	NA	A0A0B5J4J5	Pandoravirus	32.5	3.2e-26
WP_010930174.1|1108668_1110555_-|protease	ATP-dependent zinc metalloprotease FtsH	protease	M4QMW8	Micromonas_pusilla_virus	41.5	1.4e-109
WP_162096758.1|1110496_1110748_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930175.1|1110792_1111425_-	RlmE family RNA methyltransferase	NA	NA	NA	NA	NA
WP_003809618.1|1111443_1112046_+	YhbY family RNA-binding protein	NA	NA	NA	NA	NA
WP_010929591.1|1112197_1113148_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_161633091.1|1113728_1114436_+	DUF192 domain-containing protein	NA	NA	NA	NA	NA
WP_003812707.1|1114794_1115781_-	homoserine kinase	NA	NA	NA	NA	NA
WP_010930178.1|1115920_1116934_+|tRNA	tRNA dihydrouridine(20/20a) synthase DusA	tRNA	NA	NA	NA	NA
WP_005012067.1|1116930_1117881_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 13
NZ_CP010255	Bordetella pertussis strain I480 chromosome, complete genome	4106388	1157580	1219751	4106388	transposase,tRNA	Erysipelothrix_phage(33.33%)	50	NA	NA
WP_010930198.1|1157580_1158531_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019248935.1|1158629_1159253_-	serotype 2 fimbrial subunit	NA	NA	NA	NA	NA
WP_010930200.1|1159426_1161709_-	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
WP_010930201.1|1161863_1164560_-	alpha-ketoglutarate dehydrogenase	NA	NA	NA	NA	NA
WP_010930202.1|1164685_1165174_+	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_003813631.1|1167584_1170455_+	2-oxoglutarate dehydrogenase E1 component	NA	NA	NA	NA	NA
WP_010930204.1|1170500_1171715_+	2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase	NA	NA	NA	NA	NA
WP_003813626.1|1171944_1173372_+	dihydrolipoyl dehydrogenase	NA	A0A2K5B2C5	Erysipelothrix_phage	28.1	2.1e-41
WP_023853245.1|1173469_1174561_+	cell division protein ZapE	NA	NA	NA	NA	NA
WP_010930206.1|1174573_1175332_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_003813621.1|1175419_1176322_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|1176318_1177269_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930207.1|1177398_1178382_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003813618.1|1178436_1179159_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930211.1|1180637_1181993_+|tRNA	tryptophan--tRNA ligase	tRNA	NA	NA	NA	NA
WP_010930212.1|1182073_1184449_-	RNA-binding transcriptional accessory protein Tex	NA	NA	NA	NA	NA
WP_010930213.1|1184613_1186689_+	ATP-dependent DNA helicase	NA	A0A127AW80	Bacillus_phage	30.0	2.4e-75
WP_003813594.1|1186750_1187551_-	outer membrane protein assembly factor BamD	NA	NA	NA	NA	NA
WP_010930214.1|1187652_1188615_+	RluA family pseudouridine synthase	NA	NA	NA	NA	NA
WP_019247742.1|1188602_1189358_+	peptidoglycan editing factor PgeF	NA	NA	NA	NA	NA
WP_010930216.1|1189465_1191103_+	class I poly(R)-hydroxyalkanoic acid synthase	NA	NA	NA	NA	NA
WP_003813586.1|1191170_1191908_+	acetoacetyl-CoA reductase	NA	NA	NA	NA	NA
WP_003813585.1|1192010_1192586_+	polyhydroxyalkanoate synthesis repressor PhaR	NA	NA	NA	NA	NA
WP_010930217.1|1192758_1193295_+	iron transporter	NA	NA	NA	NA	NA
WP_003813580.1|1193297_1193642_+	cupredoxin domain-containing protein	NA	NA	NA	NA	NA
WP_010930218.1|1193657_1194503_+	FTR1 family protein	NA	NA	NA	NA	NA
WP_003821443.1|1194541_1195921_+	4Fe-4S binding protein	NA	NA	NA	NA	NA
WP_003813574.1|1195998_1196880_+	PhzF family phenazine biosynthesis protein	NA	NA	NA	NA	NA
WP_010929956.1|1196978_1197929_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811632.1|1197925_1198336_-	VOC family protein	NA	NA	NA	NA	NA
WP_010930219.1|1198443_1199298_-	amidohydrolase family protein	NA	NA	NA	NA	NA
WP_003811636.1|1199290_1200253_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930220.1|1200298_1201423_-	mandelate racemase/muconate lactonizing enzyme family protein	NA	Q6A202	Oenococcus_phage	28.3	1.5e-31
WP_019247966.1|1201528_1202407_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930222.1|1202531_1203311_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930223.1|1203464_1204886_+	MFS transporter	NA	NA	NA	NA	NA
WP_010930224.1|1205320_1207018_+	sodium:solute symporter family protein	NA	NA	NA	NA	NA
WP_010930225.1|1207244_1208186_-	LD-carboxypeptidase	NA	NA	NA	NA	NA
WP_010930226.1|1208512_1209259_+	aldolase	NA	NA	NA	NA	NA
WP_033446252.1|1209266_1210193_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930228.1|1210314_1211232_+	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_003811660.1|1211271_1212225_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003811662.1|1212249_1212828_+	amino acid synthesis family protein	NA	NA	NA	NA	NA
WP_010930229.1|1214501_1215110_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930230.1|1215187_1215541_-	NirD/YgiW/YdeI family stress tolerance protein	NA	NA	NA	NA	NA
WP_010930231.1|1215624_1216614_-	succinylglutamate desuccinylase/aspartoacylase family protein	NA	NA	NA	NA	NA
WP_023852977.1|1216610_1216799_-	hypothetical protein	NA	NA	NA	NA	NA
WP_076879566.1|1216816_1217767_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010927663.1|1217853_1218804_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931070.1|1218800_1219751_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 14
NZ_CP010255	Bordetella pertussis strain I480 chromosome, complete genome	4106388	1270679	1327890	4106388	transposase	Klosneuvirus(16.67%)	49	NA	NA
WP_010931070.1|1270679_1271630_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931041.1|1275376_1275988_-	DUF2239 family protein	NA	NA	NA	NA	NA
WP_003812368.1|1276210_1277671_+	IMP dehydrogenase	NA	A0A1V0SHK8	Klosneuvirus	41.3	1.6e-97
WP_010931040.1|1277767_1279360_+	glutamine-hydrolyzing GMP synthase	NA	A0A1V0SH76	Hokovirus	33.3	1.0e-17
WP_019247974.1|1279713_1279971_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003816876.1|1279972_1281313_+	type II toxin-antitoxin system HipA family toxin	NA	NA	NA	NA	NA
WP_010931038.1|1281408_1282098_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247976.1|1282110_1283541_+	MFS transporter	NA	NA	NA	NA	NA
WP_014905903.1|1285265_1286087_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931036.1|1286097_1287669_+	amidohydrolase	NA	NA	NA	NA	NA
WP_010931035.1|1287697_1288675_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931034.1|1288701_1289505_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	38.2	2.7e-30
WP_010931033.1|1289501_1290296_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_003816890.1|1290303_1291539_+	DUF521 domain-containing protein	NA	NA	NA	NA	NA
WP_010931032.1|1291531_1291966_+	DUF126 domain-containing protein	NA	NA	NA	NA	NA
WP_005013747.1|1292715_1293666_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931031.1|1294287_1296015_-	sulfate permease	NA	NA	NA	NA	NA
WP_010931030.1|1296126_1297485_+	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
WP_023853289.1|1297541_1297760_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|1297777_1298728_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931029.1|1298768_1299839_+	FUSC family protein	NA	NA	NA	NA	NA
WP_010931028.1|1299861_1300740_-	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
WP_010931027.1|1300911_1301883_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010931026.1|1302045_1302888_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931025.1|1303049_1303730_+	cupin domain-containing protein	NA	NA	NA	NA	NA
WP_010931024.1|1303723_1304893_+	FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010931023.1|1304889_1305921_+	alcohol dehydrogenase catalytic domain-containing protein	NA	A0A2K9L339	Tupanvirus	27.8	1.8e-26
WP_010931022.1|1305964_1307206_+	MFS transporter	NA	NA	NA	NA	NA
WP_010931021.1|1307240_1308773_-	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
WP_010931020.1|1308853_1309477_+	FMN-binding negative transcriptional regulator	NA	NA	NA	NA	NA
WP_010931019.1|1309507_1310119_+	LysE family translocator	NA	NA	NA	NA	NA
WP_010931018.1|1310154_1310625_+	DUF1801 domain-containing protein	NA	NA	NA	NA	NA
WP_019248147.1|1311056_1312061_+	M20/M25/M40 family metallo-hydrolase	NA	NA	NA	NA	NA
WP_010931017.1|1312097_1313612_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931016.1|1313615_1314575_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931015.1|1314603_1315407_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931014.1|1315408_1317043_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	31.1	2.9e-15
WP_010931013.1|1317126_1318188_+	LacI family DNA-binding transcriptional regulator	NA	NA	NA	NA	NA
WP_004567322.1|1318386_1318656_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931012.1|1318659_1319184_+	DNA-binding protein	NA	J9Q7G7	Salmonella_phage	32.9	6.5e-09
WP_010929591.1|1319599_1320550_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931011.1|1320546_1321581_-	metal-dependent hydrolase	NA	NA	NA	NA	NA
WP_003816758.1|1321689_1322328_+	DedA family protein	NA	NA	NA	NA	NA
WP_019247724.1|1322622_1322850_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_003820420.1|1322972_1323686_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_005013747.1|1323930_1324881_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931009.1|1324984_1325266_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931008.1|1325380_1326829_-	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
WP_005012808.1|1326939_1327890_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 15
NZ_CP010255	Bordetella pertussis strain I480 chromosome, complete genome	4106388	1418123	1470276	4106388	transposase,tRNA	Salmonella_phage(25.0%)	46	NA	NA
WP_005013747.1|1418123_1419074_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023999730.1|1419091_1419244_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003814065.1|1419240_1419594_+	cytochrome c	NA	NA	NA	NA	NA
WP_003814063.1|1419606_1419969_+	cytochrome c	NA	NA	NA	NA	NA
WP_003814061.1|1420010_1420436_-	DUF1841 family protein	NA	NA	NA	NA	NA
WP_003814059.1|1420638_1421895_+	NADP-dependent isocitrate dehydrogenase	NA	Q77Z09	Phage_21	64.8	1.2e-11
WP_003814057.1|1422093_1423074_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005015028.1|1423223_1424465_+	O-antigen ligase family protein	NA	NA	NA	NA	NA
WP_005013747.1|1424563_1425514_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814052.1|1425522_1426218_-	two-component system response regulator KdpE	NA	NA	NA	NA	NA
WP_003814050.1|1429039_1429639_-	potassium-transporting ATPase subunit KdpC	NA	NA	NA	NA	NA
WP_010930950.1|1429649_1431815_-	potassium-transporting ATPase subunit KdpB	NA	M1HBF8	Paramecium_bursaria_Chlorella_virus	27.1	1.2e-24
WP_010930949.1|1431838_1433623_-	potassium-transporting ATPase subunit KdpA	NA	NA	NA	NA	NA
WP_017685545.1|1433622_1433712_-	K(+)-transporting ATPase subunit F	NA	NA	NA	NA	NA
WP_003814042.1|1434406_1434679_+	DUF4212 domain-containing protein	NA	NA	NA	NA	NA
WP_003814040.1|1434678_1436745_+	cation acetate symporter	NA	NA	NA	NA	NA
WP_010929577.1|1436741_1437692_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|1437790_1438741_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005015014.1|1438856_1439189_-	multidrug transporter	NA	NA	NA	NA	NA
WP_010929073.1|1439185_1439872_-	Smr/MutS family protein	NA	NA	NA	NA	NA
WP_010930948.1|1439858_1440818_-	thioredoxin-disulfide reductase	NA	A0A2I2L5E1	Orpheovirus	40.2	3.1e-57
WP_003814032.1|1440859_1443220_+	DNA translocase FtsK	NA	S5VNE3	Mycobacterium_phage	48.0	7.6e-81
WP_010930946.1|1443219_1443852_+	outer membrane lipoprotein chaperone LolA	NA	NA	NA	NA	NA
WP_010930945.1|1443953_1445294_+	replication-associated recombination protein A	NA	G3MBE0	Bacillus_virus	38.9	1.6e-75
WP_010930944.1|1445340_1446696_+|tRNA	serine--tRNA ligase	tRNA	A0A1B1IVT2	uncultured_Mediterranean_phage	47.5	1.6e-83
WP_170954289.1|1446821_1447466_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003814024.1|1447410_1447728_-	virulence factor	NA	NA	NA	NA	NA
WP_003814023.1|1448000_1448516_-	hypothetical protein	NA	T1SAR8	Salmonella_phage	44.6	5.1e-06
WP_003814022.1|1448609_1448771_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003814021.1|1448786_1449542_-	GGDEF domain-containing protein	NA	NA	NA	NA	NA
WP_019247690.1|1449880_1450087_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003814020.1|1450094_1450754_-	NAAT family transporter	NA	NA	NA	NA	NA
WP_010930941.1|1451048_1453253_-	TonB-dependent alcaligin siderophore receptor FauA	NA	NA	NA	NA	NA
WP_010930940.1|1453363_1454587_-	alcaligin siderophore export MFS transporter Bcr	NA	S4TR35	Salmonella_phage	29.4	9.8e-24
WP_003814017.1|1454709_1455684_-	alcaligin siderophore biosynthesis transcriptional regulator AlcR	NA	NA	NA	NA	NA
WP_005013753.1|1455751_1456945_-	alcaligin siderophore biosynthesis protein AlcE	NA	NA	NA	NA	NA
WP_003814016.1|1456959_1457760_-	alcaligin siderophore biosynthesis protein AlcD	NA	NA	NA	NA	NA
WP_010930939.1|1457756_1459613_-	alcaligin siderophore biosynthesis protein AlcC	NA	NA	NA	NA	NA
WP_003814014.1|1459609_1460215_-	alcaligin siderophore biosynthesis protein AlcB	NA	NA	NA	NA	NA
WP_003814013.1|1460233_1461619_-	alcaligin siderophore biosynthesis protein AlcA	NA	NA	NA	NA	NA
WP_003814012.1|1462344_1463571_+	cation:proton antiporter	NA	NA	NA	NA	NA
WP_003814011.1|1463659_1464442_+	3-hydroxybutyrate dehydrogenase	NA	NA	NA	NA	NA
WP_005012067.1|1464540_1465491_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814010.1|1465517_1466291_+	peroxide stress protein YaaA	NA	NA	NA	NA	NA
WP_003814009.1|1466302_1467544_+	MFS transporter	NA	NA	NA	NA	NA
WP_076879548.1|1469325_1470276_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 16
NZ_CP010255	Bordetella pertussis strain I480 chromosome, complete genome	4106388	1514201	1574114	4106388	transposase,tRNA	Streptococcus_virus(12.5%)	52	NA	NA
WP_010930416.1|1514201_1514690_+|tRNA	Cys-tRNA(Pro) deacylase	tRNA	NA	NA	NA	NA
WP_019248504.1|1514807_1515386_+	DJ-1/PfpI family protein	NA	NA	NA	NA	NA
WP_010930418.1|1515491_1515860_+	ribbon-helix-helix domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|1515958_1516909_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994932.1|1516915_1518028_-	D-alanyl-D-alanine endopeptidase	NA	NA	NA	NA	NA
WP_010930419.1|1518714_1519917_+	MFS transporter	NA	NA	NA	NA	NA
WP_004568212.1|1519952_1520099_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930420.1|1520120_1522781_+	PD-(D/E)XK nuclease family protein	NA	NA	NA	NA	NA
WP_010930421.1|1522793_1526198_+	UvrD-helicase domain-containing protein	NA	NA	NA	NA	NA
WP_023995689.1|1526865_1529091_+	DNA polymerase III subunit gamma/tau	NA	A0A1U9WR94	Streptococcus_virus	38.5	1.2e-43
WP_010930423.1|1529137_1529464_+	YbaB/EbfC family nucleoid-associated protein	NA	NA	NA	NA	NA
WP_010930424.1|1529514_1530123_+	recombination protein RecR	NA	NA	NA	NA	NA
WP_005013747.1|1530221_1531172_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930425.1|1531241_1532006_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930426.1|1532002_1532602_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930427.1|1532705_1533557_-	neutral zinc metallopeptidase	NA	A0A1I9SA48	Rhodococcus_phage	35.3	7.0e-37
WP_010928449.1|1533616_1534243_+	threonylcarbamoyl-AMP synthase	NA	NA	NA	NA	NA
WP_005012067.1|1534239_1535190_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019249265.1|1535288_1536401_-	DUF1513 domain-containing protein	NA	NA	NA	NA	NA
WP_019248041.1|1536390_1537392_-	imelysin family protein	NA	NA	NA	NA	NA
WP_062826610.1|1537497_1539012_-	c-type cytochrome	NA	NA	NA	NA	NA
WP_005012808.1|1539095_1540046_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023853587.1|1540054_1541359_-	imelysin	NA	NA	NA	NA	NA
WP_010930431.1|1541470_1542031_-	membrane protein	NA	NA	NA	NA	NA
WP_010930432.1|1542298_1542853_+	NAD(P)H-dependent oxidoreductase	NA	A0A2P0ZL82	Lactobacillus_phage	32.0	1.7e-15
WP_010930433.1|1543308_1543524_-	dodecin domain-containing protein	NA	NA	NA	NA	NA
WP_033446228.1|1543778_1546376_+	DNA mismatch repair protein MutS	NA	A0A1V0SDQ0	Indivirus	22.6	1.5e-21
WP_010930435.1|1546372_1547560_+	cupin domain-containing protein	NA	NA	NA	NA	NA
WP_010930436.1|1548219_1548834_+	serotype 3 fimbrial subunit	NA	NA	NA	NA	NA
WP_010930437.1|1548922_1550050_-	outer membrane protein assembly factor BamC	NA	NA	NA	NA	NA
WP_033446216.1|1550061_1550967_-	4-hydroxy-tetrahydrodipicolinate synthase	NA	NA	NA	NA	NA
WP_005012067.1|1551859_1552810_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930439.1|1552991_1553744_+	glutamine ABC transporter substrate-binding protein GlnH	NA	NA	NA	NA	NA
WP_003811112.1|1553812_1554472_+	glutamine ABC transporter permease GlnP	NA	NA	NA	NA	NA
WP_003811113.1|1554468_1555197_+	glutamine ABC transporter ATP-binding protein GlnQ	NA	G9BWD6	Planktothrix_phage	39.3	3.3e-35
WP_010930440.1|1555209_1557489_-	bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase	NA	A0A1B1IUF0	uncultured_Mediterranean_phage	32.1	5.9e-06
WP_010930441.1|1557513_1557717_-	DNA-directed RNA polymerase subunit omega	NA	NA	NA	NA	NA
WP_010930442.1|1557758_1558391_-	guanylate kinase	NA	A0A218KC48	Bacillus_phage	33.9	2.4e-13
WP_010930443.1|1558526_1559444_-	c-type cytochrome	NA	NA	NA	NA	NA
WP_010930444.1|1559440_1560154_-	c-type cytochrome	NA	NA	NA	NA	NA
WP_003811135.1|1560391_1561162_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_003811137.1|1561166_1561766_-	C40 family peptidase	NA	A0A0A8WF62	Clostridium_phage	41.6	1.4e-20
WP_003811138.1|1562010_1563501_+	AMP nucleosidase	NA	NA	NA	NA	NA
WP_010926696.1|1563559_1563844_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010930445.1|1563981_1564137_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003811148.1|1564409_1565336_-	YicC family protein	NA	NA	NA	NA	NA
WP_003811149.1|1565472_1566213_+	ribonuclease PH	NA	NA	NA	NA	NA
WP_010930446.1|1566379_1567756_-	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_003811152.1|1567937_1568843_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930448.1|1570494_1572297_-	EAL domain-containing protein	NA	NA	NA	NA	NA
WP_010930449.1|1572423_1573065_+	RdgB/HAM1 family non-canonical purine NTP pyrophosphatase	NA	NA	NA	NA	NA
WP_005012808.1|1573163_1574114_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 17
NZ_CP010255	Bordetella pertussis strain I480 chromosome, complete genome	4106388	1619286	1674877	4106388	transposase	Brazilian_cedratvirus(25.0%)	47	NA	NA
WP_005013747.1|1619286_1620237_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930486.1|1620295_1621069_+	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_014486074.1|1621061_1622618_+	LTA synthase family protein	NA	NA	NA	NA	NA
WP_005013747.1|1622614_1623565_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003810741.1|1624891_1625494_-	TetR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003810743.1|1625733_1626435_-	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
WP_003816696.1|1626428_1627211_-	ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	25.8	2.0e-09
WP_005012808.1|1627395_1628346_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930483.1|1628444_1629182_-	TerC family protein	NA	A0A0S4KZH7	Pseudomonas_phage	46.6	4.1e-41
WP_010926609.1|1629371_1630130_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930482.1|1630176_1631166_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930481.1|1631343_1632312_-	transporter	NA	NA	NA	NA	NA
WP_010930480.1|1633851_1634820_+	AAA family ATPase	NA	NA	NA	NA	NA
WP_010930479.1|1634828_1635770_+	DUF58 domain-containing protein	NA	NA	NA	NA	NA
WP_010930478.1|1636243_1637254_+	VWA domain-containing protein	NA	NA	NA	NA	NA
WP_010930477.1|1637244_1638759_+	VWA domain-containing protein	NA	NA	NA	NA	NA
WP_010930476.1|1638755_1640102_+	BatD family protein	NA	NA	NA	NA	NA
WP_010930475.1|1640104_1641139_+	haloacid dehalogenase-like hydrolase	NA	NA	NA	NA	NA
WP_023852967.1|1641188_1642814_+	arylsulfatase	NA	A0A2P0VMN7	Tetraselmis_virus	52.2	2.0e-149
WP_005012067.1|1643366_1644317_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930487.1|1644421_1645369_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247865.1|1645422_1647237_-	sensor histidine kinase	NA	NA	NA	NA	NA
WP_010930489.1|1647229_1647904_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_023995112.1|1648033_1651108_+	autotransporter SphB2	NA	NA	NA	NA	NA
WP_019247905.1|1651121_1651421_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010930492.1|1651735_1652359_-	glutathione S-transferase family protein	NA	NA	NA	NA	NA
WP_010930493.1|1652602_1653472_+	TauD/TfdA family dioxygenase	NA	NA	NA	NA	NA
WP_010930494.1|1653449_1654394_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247909.1|1654479_1655406_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019247910.1|1655518_1656298_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930497.1|1656288_1657485_-	alpha-hydroxy-acid oxidizing protein	NA	NA	NA	NA	NA
WP_010930498.1|1657515_1658466_-	fumarylacetoacetate hydrolase family protein	NA	NA	NA	NA	NA
WP_010930499.1|1658687_1659377_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930500.1|1659441_1660197_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930501.1|1660248_1661241_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930502.1|1661250_1662204_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811538.1|1662319_1663282_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019249376.1|1664683_1665112_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|1665108_1666059_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_170954298.1|1666352_1667090_-	arsenical resistance protein ArsH	NA	A0A2H4J5V6	uncultured_Caudovirales_phage	68.2	1.3e-87
WP_010930504.1|1667513_1668701_-	MFS transporter	NA	NA	NA	NA	NA
WP_019249653.1|1668704_1669085_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010930506.1|1670804_1671776_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930507.1|1671789_1672503_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930508.1|1672507_1673425_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811452.1|1673531_1673828_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929588.1|1673926_1674877_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 18
NZ_CP010255	Bordetella pertussis strain I480 chromosome, complete genome	4106388	1907641	1977293	4106388	transposase,tRNA	Staphylococcus_phage(16.67%)	55	NA	NA
WP_003818515.1|1907641_1910299_-|tRNA	leucine--tRNA ligase	tRNA	A0A2H4PQS0	Staphylococcus_phage	39.0	3.3e-173
WP_010930709.1|1910376_1911579_-	MFS transporter	NA	NA	NA	NA	NA
WP_003810260.1|1911575_1912088_-	MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247822.1|1912210_1912648_-	HU family DNA-binding protein	NA	NA	NA	NA	NA
WP_010931070.1|1912924_1913875_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_062826579.1|1913973_1914924_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930710.1|1915177_1916983_+	STAS domain-containing protein	NA	A0A2H4J153	uncultured_Caudovirales_phage	27.5	2.2e-19
WP_010930711.1|1917096_1917264_-	50S ribosomal protein L33	NA	NA	NA	NA	NA
WP_003810297.1|1917327_1917564_-	50S ribosomal protein L28	NA	NA	NA	NA	NA
WP_010930712.1|1917932_1919132_-	multidrug effflux MFS transporter	NA	NA	NA	NA	NA
WP_010929591.1|1920647_1921598_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003818523.1|1922049_1923051_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003810306.1|1923223_1924081_+	proline/glycine betaine ABC transporter permease	NA	NA	NA	NA	NA
WP_003810308.1|1924077_1925340_+	glycine betaine/L-proline ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	36.6	6.8e-28
WP_003818524.1|1925440_1925815_+	tautomerase family protein	NA	NA	NA	NA	NA
WP_010930713.1|1925887_1927075_+	acetyl-CoA C-acyltransferase family protein	NA	NA	NA	NA	NA
WP_010930714.1|1927159_1927930_+	spermidine synthase	NA	NA	NA	NA	NA
WP_010930715.1|1928043_1928808_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930716.1|1928758_1930060_+	malonyl-CoA decarboxylase family protein	NA	NA	NA	NA	NA
WP_010930717.1|1930056_1930863_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003818532.1|1932607_1933579_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003818533.1|1933735_1934248_+	superoxide dismutase family protein	NA	Q9MC02	Salmonella_phage	52.3	1.8e-43
WP_010930718.1|1934406_1935381_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930719.1|1936381_1937176_+	ABC transporter ATP-binding protein	NA	A0A1V0SE00	Indivirus	25.7	5.1e-05
WP_003818535.1|1937201_1938008_-	TOBE domain-containing protein	NA	NA	NA	NA	NA
WP_003810329.1|1938118_1938709_+	DUF4136 domain-containing protein	NA	NA	NA	NA	NA
WP_010930720.1|1938719_1939898_+	patatin-like phospholipase family protein	NA	NA	NA	NA	NA
WP_010930721.1|1940000_1940375_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_019248531.1|1940627_1941959_+	efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
WP_019247651.1|1942025_1945256_+	multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_003810344.1|1946746_1947493_+	pyridoxine 5'-phosphate synthase	NA	NA	NA	NA	NA
WP_010930724.1|1947577_1948039_+	holo-ACP synthase	NA	NA	NA	NA	NA
WP_010930725.1|1948076_1949135_+	beta-N-acetylhexosaminidase	NA	NA	NA	NA	NA
WP_010930726.1|1949097_1950927_+	excinuclease ABC subunit UvrC	NA	NA	NA	NA	NA
WP_003810356.1|1950966_1951539_+	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	NA	NA	NA	NA	NA
WP_010930727.1|1952963_1953785_-	NADPH-dependent 7-cyano-7-deazaguanine reductase QueF	NA	A0A2I7SAX1	Vibrio_phage	37.6	4.1e-42
WP_010930728.1|1954103_1955426_+	isocitrate lyase	NA	NA	NA	NA	NA
WP_010930729.1|1955785_1956421_+	membrane protein	NA	NA	NA	NA	NA
WP_010930730.1|1956380_1957331_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930731.1|1958201_1959074_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010930732.1|1959151_1960291_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930733.1|1960649_1961906_+	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA	NA
WP_003816691.1|1961911_1962439_+	aromatic-ring-hydroxylating dioxygenase subunit beta	NA	NA	NA	NA	NA
WP_003816690.1|1962443_1963262_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003816687.1|1963261_1963984_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930735.1|1964005_1964320_+	2Fe-2S iron-sulfur cluster binding domain-containing protein	NA	NA	NA	NA	NA
WP_010930736.1|1964337_1965486_+	CoA transferase	NA	NA	NA	NA	NA
WP_010930737.1|1965516_1966392_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003816680.1|1966388_1967708_-	AMP-binding protein	NA	NA	NA	NA	NA
WP_014486081.1|1967780_1968977_-	acetyl-CoA acetyltransferase	NA	NA	NA	NA	NA
WP_010930739.1|1968987_1970475_-	hydroxymethylglutaryl-CoA synthase family protein	NA	NA	NA	NA	NA
WP_010930740.1|1973069_1973969_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_023852887.1|1974106_1975072_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_005015810.1|1975170_1976121_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|1976342_1977293_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 19
NZ_CP010255	Bordetella pertussis strain I480 chromosome, complete genome	4106388	1988789	2038185	4106388	transposase	Erysipelothrix_phage(16.67%)	45	NA	NA
WP_005013747.1|1988789_1989740_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812172.1|1990877_1991174_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247707.1|1991348_1992701_+	glutathione-disulfide reductase	NA	A0A2K5B2C5	Erysipelothrix_phage	27.6	2.9e-45
WP_010930153.1|1992843_1993860_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010930748.1|1995839_1996853_-	pyridoxamine 5'-phosphate oxidase family protein	NA	NA	NA	NA	NA
WP_010930749.1|1996939_1997845_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003812179.1|1998001_1998346_+	exported protein	NA	NA	NA	NA	NA
WP_010930750.1|1998503_1998962_+	(2Fe-2S)-binding protein	NA	NA	NA	NA	NA
WP_010930751.1|1998975_2001192_+	xanthine dehydrogenase family protein molybdopterin-binding subunit	NA	NA	NA	NA	NA
WP_003812183.1|2001188_2002250_+	XdhC family protein	NA	NA	NA	NA	NA
WP_010930752.1|2002278_2003253_+	AraC family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930753.1|2003204_2004023_-	hypothetical protein	NA	A0A1B1INV8	uncultured_Mediterranean_phage	28.8	2.3e-16
WP_003812191.1|2004035_2004644_-	LON peptidase substrate-binding domain-containing protein	NA	NA	NA	NA	NA
WP_010930754.1|2004818_2005214_+	VOC family protein	NA	NA	NA	NA	NA
WP_010930755.1|2005232_2006672_+	MFS transporter	NA	A0A0M3UL24	Mycobacterium_phage	37.4	7.4e-55
WP_003812199.1|2006700_2007048_+	GFA family protein	NA	NA	NA	NA	NA
WP_010929577.1|2007066_2008017_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|2008669_2009620_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023997035.1|2009703_2011521_+	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	27.4	2.3e-37
WP_019247659.1|2011594_2012242_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930758.1|2012254_2013184_-	ZIP family metal transporter	NA	NA	NA	NA	NA
WP_014905663.1|2013353_2013818_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003816977.1|2014065_2014746_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003816975.1|2014794_2016486_+	STAS domain-containing protein	NA	A0A2H4J153	uncultured_Caudovirales_phage	27.3	5.0e-42
WP_010930760.1|2016501_2017053_-	SRPBCC family protein	NA	NA	NA	NA	NA
WP_003816971.1|2017049_2017421_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010930761.1|2017533_2018370_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_029443822.1|2018380_2018905_-	DUF302 domain-containing protein	NA	NA	NA	NA	NA
WP_003812228.1|2019002_2019182_+	DUF3008 family protein	NA	NA	NA	NA	NA
WP_010930763.1|2019311_2020286_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003816964.1|2020416_2020773_+	DUF1428 domain-containing protein	NA	NA	NA	NA	NA
WP_010930764.1|2020762_2021638_-	PhzF family phenazine biosynthesis protein	NA	NA	NA	NA	NA
WP_010930765.1|2021736_2022621_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930766.1|2022642_2023938_-	DUF445 domain-containing protein	NA	NA	NA	NA	NA
WP_003816959.1|2024886_2025537_+	NAD(P)H-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010930767.1|2025624_2027145_-	aldehyde dehydrogenase	NA	NA	NA	NA	NA
WP_010930768.1|2027402_2029268_+	sigma-54-dependent Fis family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|2030313_2031264_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_162268681.1|2031281_2031422_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930769.1|2032236_2032596_-	CidA/LrgA family protein	NA	NA	NA	NA	NA
WP_010930770.1|2032583_2034020_-	dethiobiotin synthase	NA	NA	NA	NA	NA
WP_010930771.1|2034016_2034670_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_010930772.1|2034666_2035860_-	8-amino-7-oxononanoate synthase	NA	NA	NA	NA	NA
WP_010930773.1|2035963_2037238_+	adenosylmethionine--8-amino-7-oxononanoate transaminase	NA	A0A1V0SKB7	Klosneuvirus	28.9	9.6e-14
WP_005012067.1|2037234_2038185_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 20
NZ_CP010255	Bordetella pertussis strain I480 chromosome, complete genome	4106388	2049389	2090080	4106388	transposase,protease,tRNA	Klosneuvirus(25.0%)	36	NA	NA
WP_005013747.1|2049389_2050340_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|2050438_2051389_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_047122784.1|2051348_2051762_-	transcriptional regulator	NA	A0A222YXG1	Escherichia_phage	59.0	3.8e-36
WP_003816708.1|2052046_2052346_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930783.1|2052755_2055038_-	RNA polymerase sigma factor RpoD	NA	A0A2I7SAT0	Vibrio_phage	30.1	3.2e-36
WP_010930784.1|2055723_2057754_-	DNA primase	NA	A0A0K1LMQ9	Caulobacter_phage	41.9	1.0e-65
WP_006218592.1|2057773_2057986_-	30S ribosomal protein S21	NA	NA	NA	NA	NA
WP_003810720.1|2058263_2058803_-	phosphoribosyltransferase	NA	NA	NA	NA	NA
WP_023852902.1|2058916_2060212_-	adenylosuccinate synthase	NA	A0A160ER07	Powai_lake_megavirus	33.5	3.0e-63
WP_010930786.1|2060288_2061446_-	ATP phosphoribosyltransferase regulatory subunit	NA	NA	NA	NA	NA
WP_010930787.1|2061629_2062529_-|protease	protease modulator HflC	protease	NA	NA	NA	NA
WP_010930788.1|2062547_2063852_-|protease	FtsH protease activity modulator HflK	protease	NA	NA	NA	NA
WP_010930789.1|2063817_2064924_-	GTPase HflX	NA	NA	NA	NA	NA
WP_003810707.1|2065011_2065248_-	RNA chaperone Hfq	NA	NA	NA	NA	NA
WP_010930790.1|2065386_2066457_-	histidinol-phosphate transaminase	NA	A0A1X6WGT4	Pacmanvirus	25.7	2.5e-15
WP_003810703.1|2066460_2067816_-	ribosome biogenesis GTPase Der	NA	NA	NA	NA	NA
WP_003810701.1|2067842_2069003_-	outer membrane protein assembly factor BamB	NA	NA	NA	NA	NA
WP_010930791.1|2069005_2069644_-	tetratricopeptide repeat protein	NA	NA	NA	NA	NA
WP_023995843.1|2069645_2070932_-|tRNA	histidine--tRNA ligase	tRNA	NA	NA	NA	NA
WP_010930793.1|2070990_2072286_-	flavodoxin-dependent (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase	NA	NA	NA	NA	NA
WP_003810693.1|2072292_2072799_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_004568542.1|2072795_2073944_-	23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN	NA	NA	NA	NA	NA
WP_003810689.1|2073971_2074397_-	nucleoside-diphosphate kinase	NA	D2E8E1	Anguillid_herpesvirus	43.2	2.1e-21
WP_010930794.1|2074719_2077602_+|tRNA	valine--tRNA ligase	tRNA	A0A1V0SK04	Klosneuvirus	37.1	3.7e-138
WP_023852900.1|2077694_2078450_-	MipA/OmpV family protein	NA	NA	NA	NA	NA
WP_010930796.1|2079215_2080565_+	two-component sensor histidine kinase	NA	NA	NA	NA	NA
WP_076879566.1|2080663_2081614_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930048.1|2081712_2082663_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930594.1|2082736_2083210_+	RidA family protein	NA	NA	NA	NA	NA
WP_010930593.1|2083235_2084444_+	aminotransferase class V-fold PLP-dependent enzyme	NA	NA	NA	NA	NA
WP_003816734.1|2084440_2085214_-|tRNA	tRNA (guanosine(37)-N1)-methyltransferase TrmD	tRNA	NA	NA	NA	NA
WP_014905757.1|2085213_2085837_-	ribosome maturation factor RimM	NA	NA	NA	NA	NA
WP_010926757.1|2086002_2086263_-	30S ribosomal protein S16	NA	NA	NA	NA	NA
WP_010930591.1|2086566_2087148_+	hypothetical protein	NA	NA	NA	NA	NA
WP_004568544.1|2087214_2087469_-	sulfurtransferase TusA family protein	NA	NA	NA	NA	NA
WP_010930590.1|2087455_2090080_-|tRNA	alanine--tRNA ligase	tRNA	A0A1V0SK38	Klosneuvirus	39.4	1.7e-81
>prophage 21
NZ_CP010255	Bordetella pertussis strain I480 chromosome, complete genome	4106388	2117863	2231524	4106388	transposase,protease,tRNA	Lake_Baikal_phage(11.54%)	100	NA	NA
WP_010929577.1|2117863_2118814_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930573.1|2119014_2119824_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_005013747.1|2119948_2120899_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930572.1|2120895_2121789_-	methylglyoxal synthase	NA	NA	NA	NA	NA
WP_003812452.1|2121913_2122108_-	Fe-S cluster assembly protein IscX	NA	NA	NA	NA	NA
WP_003812453.1|2122107_2122449_-	ISC system 2Fe-2S type ferredoxin	NA	NA	NA	NA	NA
WP_010930571.1|2122458_2124321_-	Fe-S protein assembly chaperone HscA	NA	A0A0N9QXN8	Chrysochromulina_ericina_virus	42.4	3.0e-101
WP_003812456.1|2124450_2124963_-	Fe-S protein assembly co-chaperone HscB	NA	NA	NA	NA	NA
WP_003812458.1|2124965_2125289_-	iron-sulfur cluster assembly protein IscA	NA	A0A2H4N7N5	Lake_Baikal_phage	52.8	6.8e-25
WP_003812460.1|2125290_2125701_-	Fe-S cluster assembly scaffold IscU	NA	A0A218MKD1	uncultured_virus	79.0	7.5e-53
WP_010930570.1|2125738_2126950_-	IscS subfamily cysteine desulfurase	NA	NA	NA	NA	NA
WP_003812463.1|2126967_2127480_-	Fe-S cluster assembly transcriptional regulator IscR	NA	NA	NA	NA	NA
WP_010930569.1|2127695_2128187_-	low molecular weight phosphotyrosine protein phosphatase	NA	NA	NA	NA	NA
WP_010930568.1|2128439_2130476_-	excinuclease ABC subunit UvrB	NA	NA	NA	NA	NA
WP_019247244.1|2130553_2131756_+	aspartate/tyrosine/aromatic aminotransferase	NA	NA	NA	NA	NA
WP_010930566.1|2131884_2132535_+	transcriptional repressor LexA	NA	A0A2H4JG58	uncultured_Caudovirales_phage	50.7	3.3e-10
WP_005012067.1|2134092_2135043_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247934.1|2135613_2135826_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247935.1|2135843_2136575_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003812478.1|2136609_2137251_-	CoA transferase subunit B	NA	NA	NA	NA	NA
WP_010930565.1|2137243_2137912_-	3-oxoacid CoA-transferase subunit A	NA	NA	NA	NA	NA
WP_010930564.1|2140124_2140901_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930563.1|2140922_2142080_-	thiolase	NA	NA	NA	NA	NA
WP_003812491.1|2142076_2142508_-	OB-fold domain-containing protein	NA	NA	NA	NA	NA
WP_015063637.1|2142504_2143308_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010930561.1|2143321_2143723_-	MaoC family dehydratase	NA	NA	NA	NA	NA
WP_010930560.1|2143789_2144761_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930559.1|2144826_2146050_-	CoA transferase	NA	NA	NA	NA	NA
WP_019247936.1|2146277_2147228_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930557.1|2147351_2149805_-	endopeptidase La	NA	A0A0R6PGP8	Moraxella_phage	52.0	1.5e-220
WP_010930556.1|2149993_2151298_-|protease	ATP-dependent Clp protease ATP-binding subunit ClpX	protease	G3M9Z9	Bacillus_virus	53.8	3.2e-129
WP_003812508.1|2151402_2152056_-	ATP-dependent Clp endopeptidase proteolytic subunit ClpP	NA	A0A223W000	Agrobacterium_phage	57.5	6.8e-56
WP_010930555.1|2152058_2153369_-	trigger factor	NA	NA	NA	NA	NA
WP_010930554.1|2153565_2154126_+	TIGR00645 family protein	NA	K4K6D8	Caulobacter_phage	33.7	1.0e-23
WP_010930553.1|2154237_2154438_-	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	64.4	7.4e-14
WP_003812519.1|2154783_2155350_-	DUF924 family protein	NA	NA	NA	NA	NA
WP_010930551.1|2155433_2155637_-	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	62.1	1.6e-16
WP_003812524.1|2155943_2156264_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003812526.1|2156305_2156587_-	membrane protein	NA	NA	NA	NA	NA
WP_010930550.1|2156661_2157918_-	autotransporter Phg	NA	NA	NA	NA	NA
WP_010930549.1|2158300_2158630_+	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
WP_003812536.1|2160200_2161022_+	2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase	NA	NA	NA	NA	NA
WP_010930548.1|2161021_2162161_+	succinyl-diaminopimelate desuccinylase	NA	NA	NA	NA	NA
WP_019247938.1|2162167_2163064_+	50S ribosomal protein L3 N(5)-glutamine methyltransferase	NA	NA	NA	NA	NA
WP_010930546.1|2163060_2164986_+	ATP-binding cassette domain-containing protein	NA	A0A2K9L0W2	Tupanvirus	31.8	1.1e-66
WP_010926400.1|2165345_2167958_+	TonB-dependent receptor	NA	NA	NA	NA	NA
WP_003812546.1|2168010_2170311_-	UvrD-helicase domain-containing protein	NA	A7KV33	Bacillus_phage	35.9	9.9e-110
WP_003812548.1|2170307_2171516_-	fatty acid desaturase	NA	NA	NA	NA	NA
WP_010930545.1|2171777_2172152_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|2172148_2173099_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_076879626.1|2173197_2175192_-	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	33.3	4.4e-21
WP_010930543.1|2175251_2176217_+	bifunctional riboflavin kinase/FAD synthetase	NA	NA	NA	NA	NA
WP_010930542.1|2176206_2179068_+|tRNA	isoleucine--tRNA ligase	tRNA	A0A1V0SJ93	Klosneuvirus	25.5	1.0e-71
WP_010930541.1|2179070_2179577_+	lipoprotein signal peptidase	NA	NA	NA	NA	NA
WP_010930540.1|2179681_2180890_+	bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC	NA	Q9HH70	Methanothermobacter_phage	30.0	3.8e-36
WP_033446178.1|2180891_2181830_-	membrane protein	NA	NA	NA	NA	NA
WP_010930538.1|2181991_2182465_+	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012808.1|2182461_2183412_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005015810.1|2183510_2184461_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_004566334.1|2184571_2185012_-	DUF937 domain-containing protein	NA	NA	NA	NA	NA
WP_010930537.1|2185140_2186370_-	lytic murein transglycosylase	NA	NA	NA	NA	NA
WP_004566336.1|2186408_2187230_-	ferritin-like domain-containing protein	NA	NA	NA	NA	NA
WP_029443743.1|2187283_2188435_+	N-acetyltransferase	NA	NA	NA	NA	NA
WP_010930535.1|2188526_2189015_-	DUF1854 domain-containing protein	NA	NA	NA	NA	NA
WP_019247811.1|2191565_2194115_+	cyanophycin synthetase	NA	NA	NA	NA	NA
WP_010930533.1|2194185_2196759_+	cyanophycin synthetase	NA	NA	NA	NA	NA
WP_003813568.1|2197024_2197225_+	CsbD family protein	NA	NA	NA	NA	NA
WP_003813570.1|2197256_2197418_+	DUF1328 domain-containing protein	NA	NA	NA	NA	NA
WP_003813572.1|2197475_2197814_+	BON domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|2197962_2198913_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247882.1|2199686_2200355_+	arylesterase	NA	NA	NA	NA	NA
WP_019247881.1|2200336_2202352_-	SurA N-terminal domain-containing protein	NA	NA	NA	NA	NA
WP_004568486.1|2202534_2203284_+	glycerophosphodiester phosphodiesterase	NA	A0A2H4PGQ5	Escherichia_phage	27.8	1.5e-14
WP_003816518.1|2203296_2204160_+	23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ	NA	NA	NA	NA	NA
WP_003816520.1|2204163_2205579_-	dihydrolipoyl dehydrogenase	NA	NA	NA	NA	NA
WP_010930530.1|2205712_2206441_-	redoxin family protein	NA	A0A1D8KSL1	Synechococcus_phage	56.8	9.6e-43
WP_003811035.1|2206579_2206780_-	heavy-metal-associated domain-containing protein	NA	NA	NA	NA	NA
WP_003816523.1|2206955_2207354_+	Cu(I)-responsive transcriptional regulator	NA	NA	NA	NA	NA
WP_003816525.1|2207377_2208778_-	23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD	NA	A0A2K5B251	Erysipelothrix_phage	26.5	7.3e-31
WP_010930529.1|2208896_2209649_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930528.1|2209937_2210537_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019248494.1|2210641_2211421_-	3'-5' exonuclease	NA	NA	NA	NA	NA
WP_003811022.1|2211417_2212302_-	peptidoglycan DD-metalloendopeptidase family protein	NA	A0A292GJG6	Xanthomonas_phage	49.5	4.6e-15
WP_019247478.1|2212319_2213099_-	protein-L-isoaspartate(D-aspartate) O-methyltransferase	NA	A0A1B1IU40	uncultured_Mediterranean_phage	46.9	4.8e-32
WP_010930526.1|2213083_2213842_-	5'/3'-nucleotidase SurE	NA	A0A1B1ITZ2	uncultured_Mediterranean_phage	51.2	1.4e-68
WP_003811015.1|2213967_2214615_+	glycerol-3-phosphate 1-O-acyltransferase PlsY	NA	NA	NA	NA	NA
WP_010929632.1|2214882_2215899_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010930524.1|2215996_2217037_-|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD	tRNA	A0A0R6PI74	Moraxella_phage	51.3	6.1e-91
WP_003811011.1|2217171_2218464_+	NCS2 family permease	NA	A0A0R6PHV4	Moraxella_phage	36.0	1.7e-66
WP_003811007.1|2219823_2220207_+	thioredoxin family protein	NA	V9SJ74	Achromobacter_phage	25.8	8.1e-09
WP_010930523.1|2220224_2220812_-	YigZ family protein	NA	A0A1X9I5T8	Streptococcus_phage	35.8	4.7e-16
WP_010930048.1|2220849_2221800_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930801.1|2221898_2222459_-	diaminobutyrate acetyltransferase	NA	NA	NA	NA	NA
WP_010930802.1|2222455_2223001_-	winged helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003818661.1|2223196_2224225_+	MurR/RpiR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930803.1|2224265_2225606_+	aspartate aminotransferase family protein	NA	A0A1V0SKB7	Klosneuvirus	22.8	8.8e-18
WP_003818658.1|2225714_2226719_+	TAXI family TRAP transporter solute-binding subunit	NA	NA	NA	NA	NA
WP_010930804.1|2226825_2229426_+	TRAP transporter fused permease subunit	NA	NA	NA	NA	NA
WP_005012067.1|2229524_2230475_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930522.1|2230573_2231524_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 22
NZ_CP010255	Bordetella pertussis strain I480 chromosome, complete genome	4106388	2577580	2644080	4106388	transposase	uncultured_Caudovirales_phage(40.0%)	56	NA	NA
WP_005012067.1|2577580_2578531_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811850.1|2578900_2579473_+	flagellar basal body-associated protein FliL	NA	NA	NA	NA	NA
WP_003811852.1|2579475_2580486_+	flagellar motor switch protein FliM	NA	NA	NA	NA	NA
WP_010930335.1|2580478_2580979_+	flagellar motor switch protein FliN	NA	NA	NA	NA	NA
WP_003811855.1|2580989_2581331_+	flagellar biosynthetic protein FliO	NA	NA	NA	NA	NA
WP_015041547.1|2581342_2582134_+	flagellar type III secretion system pore protein FliP	NA	NA	NA	NA	NA
WP_003811859.1|2582150_2582420_+	flagellar biosynthesis protein FliQ	NA	NA	NA	NA	NA
WP_010930333.1|2582442_2583231_+	flagellar biosynthetic protein FliR	NA	NA	NA	NA	NA
WP_010929632.1|2583277_2584294_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_014486070.1|2584510_2585953_-	PAS domain-containing protein	NA	A0A1B0V854	Salmonella_phage	41.8	1.0e-35
WP_010930332.1|2586131_2587751_-	Tar ligand binding domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	45.3	1.5e-08
WP_010930331.1|2587871_2589692_-	Tar ligand binding domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	52.6	6.4e-11
WP_010930330.1|2589770_2591303_-	flagellar hook-associated protein FlgL	NA	NA	NA	NA	NA
WP_010930329.1|2591336_2592983_-	flagellar hook-associated protein FlgK	NA	NA	NA	NA	NA
WP_010930328.1|2593052_2594075_-	flagellar assembly peptidoglycan hydrolase FlgJ	NA	A0A088F6W1	Sulfitobacter_phage	31.4	1.9e-12
WP_010930327.1|2594092_2595226_-	flagellar basal body P-ring protein FlgI	NA	NA	NA	NA	NA
WP_010930326.1|2595228_2595918_-	flagellar basal body L-ring protein FlgH	NA	NA	NA	NA	NA
WP_010930325.1|2595917_2596703_-	flagellar basal-body rod protein FlgG	NA	NA	NA	NA	NA
WP_003817181.1|2596746_2597511_-	flagellar basal body rod protein FlgF	NA	NA	NA	NA	NA
WP_003817180.1|2597549_2598971_-	flagellar hook-basal body complex protein	NA	NA	NA	NA	NA
WP_010930324.1|2599036_2599741_-	flagellar basal body rod modification protein FlgD	NA	NA	NA	NA	NA
WP_003817176.1|2599788_2600208_-	flagellar basal body rod protein FlgC	NA	NA	NA	NA	NA
WP_010930323.1|2600220_2600628_-	flagellar basal body rod protein FlgB	NA	NA	NA	NA	NA
WP_010930322.1|2600811_2601522_+	flagellar basal body P-ring formation protein FlgA	NA	NA	NA	NA	NA
WP_003817172.1|2601648_2601939_+	flagellar biosynthesis anti-sigma factor FlgM	NA	NA	NA	NA	NA
WP_003817170.1|2601956_2602439_+	flagellar protein FlgN	NA	NA	NA	NA	NA
WP_010930321.1|2606944_2608099_-	flagellar type III secretion system protein FlhB	NA	NA	NA	NA	NA
WP_010931363.1|2608404_2609421_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010930319.1|2609667_2610456_+	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003812020.1|2610522_2611203_+	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003812022.1|2611199_2611970_+	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	39.1	9.8e-30
WP_010930208.1|2612068_2613019_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811401.1|2613074_2613992_-	2-dehydropantoate 2-reductase	NA	NA	NA	NA	NA
WP_003811400.1|2614002_2615181_-	mandelate racemase/muconate lactonizing enzyme family protein	NA	NA	NA	NA	NA
WP_010930318.1|2615200_2616196_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003811396.1|2617784_2618393_+	3-isopropylmalate dehydratase small subunit	NA	NA	NA	NA	NA
WP_003811393.1|2618380_2619421_+	LacI family DNA-binding transcriptional regulator	NA	NA	NA	NA	NA
WP_003811391.1|2619438_2620401_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003811389.1|2620397_2621591_-	CoA transferase	NA	NA	NA	NA	NA
WP_010930317.1|2621587_2622385_-	citryl-CoA lyase	NA	NA	NA	NA	NA
WP_014486069.1|2622410_2623397_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930316.1|2623415_2625455_-	acetate--CoA ligase family protein	NA	NA	NA	NA	NA
WP_010930315.1|2625656_2626337_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930314.1|2626350_2627262_-	CoA ester lyase	NA	NA	NA	NA	NA
WP_003811381.1|2627258_2627837_-	NAD(P)H-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010930313.1|2627975_2628881_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930312.1|2628888_2632308_+	TM0106 family RecB-like putative nuclease	NA	NA	NA	NA	NA
WP_010930311.1|2632295_2634896_-	BP1344/BB2830 family autotransporter	NA	NA	NA	NA	NA
WP_003811375.1|2635851_2636484_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003811372.1|2636877_2637636_+	endonuclease/exonuclease/phosphatase family protein	NA	NA	NA	NA	NA
WP_003811370.1|2637632_2638835_+	cardiolipin synthase ClsB	NA	NA	NA	NA	NA
WP_010930208.1|2639022_2639973_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930310.1|2640880_2642026_+	DUF3182 family protein	NA	NA	NA	NA	NA
WP_019247449.1|2642012_2642768_+	alpha/beta fold hydrolase	NA	NA	NA	NA	NA
WP_003811361.1|2642884_2643064_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930208.1|2643129_2644080_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 23
NZ_CP010255	Bordetella pertussis strain I480 chromosome, complete genome	4106388	2807685	2862202	4106388	transposase	Diachasmimorpha_longicaudata_entomopoxvirus(20.0%)	48	NA	NA
WP_023853639.1|2807685_2808636_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931071.1|2808964_2809570_+	fimbrial major subunit FimX	NA	NA	NA	NA	NA
WP_010931072.1|2809623_2810937_-	phenylacetate--CoA ligase	NA	NA	NA	NA	NA
WP_003813284.1|2811011_2811482_-	hydroxyphenylacetyl-CoA thioesterase PaaI	NA	NA	NA	NA	NA
WP_010931073.1|2811481_2812270_-	2-(1,2-epoxy-1,2-dihydrophenyl)acetyl-CoA isomerase	NA	NA	NA	NA	NA
WP_010931074.1|2812280_2813933_-	phenylacetic acid degradation protein PaaN	NA	NA	NA	NA	NA
WP_010929591.1|2814020_2814971_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931075.1|2816132_2816639_-	phenylacetate-CoA oxygenase subunit PaaJ	NA	NA	NA	NA	NA
WP_003813293.1|2816635_2817400_-	phenylacetate-CoA oxygenase subunit PaaC	NA	NA	NA	NA	NA
WP_010931076.1|2817415_2817700_-	1,2-phenylacetyl-CoA epoxidase subunit B	NA	NA	NA	NA	NA
WP_003813298.1|2817764_2818754_-	1,2-phenylacetyl-CoA epoxidase subunit A	NA	NA	NA	NA	NA
WP_010931077.1|2818925_2819855_+	phenylacetic acid degradation operon negative regulatory protein PaaX	NA	NA	NA	NA	NA
WP_003813302.1|2819826_2820513_-	NAD(P)H-hydrate epimerase	NA	NA	NA	NA	NA
WP_003813303.1|2820546_2821092_-	oligoribonuclease	NA	Q8B5Y0	Diachasmimorpha_longicaudata_entomopoxvirus	37.7	2.1e-26
WP_003813306.1|2821136_2822402_+	M48 family metallopeptidase	NA	NA	NA	NA	NA
WP_003813309.1|2822398_2823301_+	ribosome small subunit-dependent GTPase A	NA	NA	NA	NA	NA
WP_019247679.1|2824482_2825427_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931079.1|2825521_2827039_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931080.1|2827080_2828709_-	gamma-glutamyltransferase	NA	NA	NA	NA	NA
WP_003811986.1|2828816_2829698_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931081.1|2832810_2833185_+	endonuclease	NA	F4YXR7	Roseobacter_phage	54.4	2.1e-25
WP_003812004.1|2833209_2833548_-	P-II family nitrogen regulator	NA	NA	NA	NA	NA
WP_010931082.1|2833591_2835226_-	NAD+ synthase	NA	A0A2L0UZF5	Agrobacterium_phage	36.6	8.3e-87
WP_010931083.1|2835264_2836611_-	mechanosensitive ion channel family protein	NA	NA	NA	NA	NA
WP_003812010.1|2836718_2838140_+	argininosuccinate lyase	NA	NA	NA	NA	NA
WP_010931084.1|2838209_2838794_-	nitroreductase	NA	NA	NA	NA	NA
WP_005012067.1|2838896_2839847_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931085.1|2839981_2841088_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010931086.1|2841098_2842196_+	GTP 3',8-cyclase MoaA	NA	NA	NA	NA	NA
WP_010931087.1|2842340_2843546_-	molybdopterin molybdotransferase MoeA	NA	NA	NA	NA	NA
WP_010931088.1|2843552_2844074_-	molybdenum cofactor biosynthesis protein B	NA	NA	NA	NA	NA
WP_010931089.1|2844070_2844562_-	molybdenum cofactor biosynthesis protein MoaE	NA	NA	NA	NA	NA
WP_003819740.1|2844558_2844810_-	MoaD/ThiS family protein	NA	NA	NA	NA	NA
WP_003819741.1|2844790_2845276_-	cyclic pyranopterin monophosphate synthase MoaC	NA	NA	NA	NA	NA
WP_010931090.1|2845411_2848873_+	DUF748 domain-containing protein	NA	NA	NA	NA	NA
WP_010931091.1|2848890_2849775_+	dienelactone hydrolase family protein	NA	NA	NA	NA	NA
WP_010931092.1|2849784_2850216_-	lipoprotein	NA	NA	NA	NA	NA
WP_003809348.1|2850462_2850966_+	peroxiredoxin	NA	M1I839	Pelagibacter_phage	44.1	1.8e-24
WP_010931094.1|2851043_2852444_+	MFS transporter	NA	NA	NA	NA	NA
WP_010931095.1|2852518_2853394_-	membrane protein	NA	NA	NA	NA	NA
WP_023853546.1|2853390_2854398_-	biotin synthase BioB	NA	NA	NA	NA	NA
WP_010931097.1|2854865_2855171_+	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
WP_003819753.1|2855261_2855852_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930525.1|2856042_2857059_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010931098.1|2857250_2859587_-	heavy metal translocating P-type ATPase	NA	E4ZFI9	Streptococcus_phage	42.8	3.2e-124
WP_003812014.1|2859669_2860104_+	Cd(II)/Pb(II)-responsive transcriptional regulator	NA	NA	NA	NA	NA
WP_023995489.1|2860202_2861153_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|2861251_2862202_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 24
NZ_CP010255	Bordetella pertussis strain I480 chromosome, complete genome	4106388	2870227	2927014	4106388	transposase,protease	uncultured_Mediterranean_phage(28.57%)	41	NA	NA
WP_005012067.1|2870227_2871178_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931105.1|2872884_2873151_-	accessory factor UbiK family protein	NA	NA	NA	NA	NA
WP_003812839.1|2873858_2874197_+	P-II family nitrogen regulator	NA	NA	NA	NA	NA
WP_010931107.1|2878751_2879354_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931108.1|2879450_2880740_+	MFS transporter	NA	NA	NA	NA	NA
WP_003812846.1|2880797_2881529_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	31.0	1.4e-12
WP_010931109.1|2881525_2882329_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	23.5	7.9e-14
WP_003812851.1|2882325_2883414_-	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
WP_003820410.1|2883410_2884340_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003812857.1|2884488_2885634_-	branched-chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930800.1|2885655_2886606_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_154698391.1|2886623_2886782_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931110.1|2886936_2890758_-	trifunctional transcriptional regulator/proline dehydrogenase/L-glutamate gamma-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
WP_010931111.1|2890914_2891583_-	membrane integrity-associated transporter subunit PqiC	NA	NA	NA	NA	NA
WP_014905522.1|2891587_2893261_-	MCE family protein	NA	NA	NA	NA	NA
WP_003820402.1|2893279_2894599_-	PqiA/YebS family transporter subunit	NA	NA	NA	NA	NA
WP_010931114.1|2894603_2896919_-|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	protease	A0A223W0B1	Agrobacterium_phage	41.9	4.1e-164
WP_010931115.1|2896974_2899143_-	penicillin-binding protein 1C	NA	NA	NA	NA	NA
WP_010931116.1|2899139_2904329_-	alpha-2-macroglobulin family protein	NA	NA	NA	NA	NA
WP_003820400.1|2904418_2904733_-|protease	ATP-dependent Clp protease adapter ClpS	protease	A0A1B1IT64	uncultured_Mediterranean_phage	43.8	1.2e-10
WP_003812875.1|2904960_2905206_+	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	76.6	1.3e-20
WP_003820399.1|2905300_2905819_+	DUF192 domain-containing protein	NA	A0A1B1IUW8	uncultured_Mediterranean_phage	42.2	5.1e-14
WP_010931117.1|2905918_2907124_-	3-oxoadipyl-CoA thiolase	NA	NA	NA	NA	NA
WP_019247560.1|2907239_2908637_-	chloride channel protein	NA	NA	NA	NA	NA
WP_010931119.1|2908753_2909332_-	superoxide dismutase [Fe]	NA	NA	NA	NA	NA
WP_010931120.1|2909404_2910796_-	exodeoxyribonuclease VII large subunit	NA	A0A1V0SD82	Indivirus	32.0	1.4e-29
WP_005012067.1|2910963_2911914_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812889.1|2912194_2912815_+	MotA/TolQ/ExbB proton channel family protein	NA	NA	NA	NA	NA
WP_010931122.1|2912811_2913225_+	biopolymer transporter ExbD	NA	NA	NA	NA	NA
WP_010931123.1|2913221_2914265_+	tetraacyldisaccharide 4'-kinase	NA	NA	NA	NA	NA
WP_003812895.1|2914320_2914509_+	Trm112 family protein	NA	NA	NA	NA	NA
WP_010931124.1|2914518_2915283_+	3-deoxy-manno-octulosonate cytidylyltransferase	NA	NA	NA	NA	NA
WP_010931125.1|2915373_2916030_+	adenylate kinase	NA	NA	NA	NA	NA
WP_010931126.1|2916121_2916880_+	3-hydroxyacyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_010931127.1|2916905_2918507_+	murein biosynthesis integral membrane protein MurJ	NA	NA	NA	NA	NA
WP_010931128.1|2918707_2919712_+	FecR domain-containing protein	NA	NA	NA	NA	NA
WP_003812908.1|2919812_2920076_+	30S ribosomal protein S20	NA	NA	NA	NA	NA
WP_010931129.1|2920193_2920970_-	2-dehydro-3-deoxyglucarate aldolase	NA	NA	NA	NA	NA
WP_005012067.1|2921560_2922511_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931130.1|2924894_2926007_-	Ldh family oxidoreductase	NA	NA	NA	NA	NA
WP_005012808.1|2926063_2927014_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 25
NZ_CP010255	Bordetella pertussis strain I480 chromosome, complete genome	4106388	2957400	3001091	4106388	transposase	Planktothrix_phage(33.33%)	41	NA	NA
WP_005012067.1|2957400_2958351_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_162268686.1|2958368_2958518_+	hypothetical protein	NA	NA	NA	NA	NA
WP_023852715.1|2958471_2959368_-	inositol monophosphatase	NA	NA	NA	NA	NA
WP_003814547.1|2961645_2963871_+	glycoside hydrolase family 31 protein	NA	NA	NA	NA	NA
WP_003814544.1|2964035_2965124_+	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	36.4	8.7e-32
WP_019247918.1|2965080_2965734_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931144.1|2965781_2966579_+	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930176.1|2967110_2968061_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247277.1|2968135_2969290_+	iron-containing alcohol dehydrogenase	NA	NA	NA	NA	NA
WP_005012067.1|2969346_2970297_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814535.1|2970395_2970701_-	antibiotic biosynthesis monooxygenase	NA	NA	NA	NA	NA
WP_003820797.1|2970729_2971164_-	DUF126 domain-containing protein	NA	NA	NA	NA	NA
WP_010931147.1|2971165_2972410_-	DUF521 domain-containing protein	NA	NA	NA	NA	NA
WP_003820799.1|2972406_2973117_-	FadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_033446288.1|2973131_2974043_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931149.1|2974405_2974810_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247890.1|2974806_2975265_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_019247891.1|2975271_2976180_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_010931150.1|2976176_2977043_+	sugar ABC transporter permease	NA	NA	NA	NA	NA
WP_003814524.1|2977029_2977857_+	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
WP_003820806.1|2977867_2978995_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	32.3	1.2e-23
WP_023852748.1|2980072_2981311_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931152.1|2981352_2982615_+	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_010931153.1|2982621_2983374_+	DNA-binding protein	NA	NA	NA	NA	NA
WP_019248355.1|2983425_2983611_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003820813.1|2983886_2984351_+	redox-sensitive transcriptional activator SoxR	NA	NA	NA	NA	NA
WP_003820814.1|2984382_2985042_+	DNA-3-methyladenine glycosylase I	NA	NA	NA	NA	NA
WP_010931154.1|2985186_2987295_+	AsmA family protein	NA	NA	NA	NA	NA
WP_023852714.1|2987291_2988242_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931155.1|2988345_2988966_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931156.1|2989057_2989810_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_019248356.1|2990944_2992069_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247402.1|2992114_2992483_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|2992724_2993675_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247492.1|2994710_2995253_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023998107.1|2995450_2995621_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|2995638_2996589_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023997028.1|2996585_2997551_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003815281.1|2997620_2998457_+	3-methyl-2-oxobutanoate hydroxymethyltransferase	NA	A0A0P0BXC9	Ostreococcus_lucimarinus_virus	33.3	1.6e-33
WP_010931158.1|2998969_3000079_+	porin	NA	NA	NA	NA	NA
WP_005012067.1|3000140_3001091_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 27
NZ_CP010255	Bordetella pertussis strain I480 chromosome, complete genome	4106388	3381037	3434778	4106388	transposase	Staphylococcus_phage(33.33%)	48	NA	NA
WP_023995489.1|3381037_3381988_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931336.1|3382392_3383037_-	urease accessory protein UreG	NA	NA	NA	NA	NA
WP_019247677.1|3383061_3383646_-	urease accessory protein UreF	NA	NA	NA	NA	NA
WP_014905506.1|3383746_3384364_-	urease accessory protein UreE	NA	NA	NA	NA	NA
WP_010931337.1|3384366_3386082_-	urease subunit alpha	NA	NA	NA	NA	NA
WP_010931338.1|3386078_3386387_-	urease subunit beta	NA	NA	NA	NA	NA
WP_003814828.1|3386403_3387021_-	HupE/UreJ family protein	NA	NA	NA	NA	NA
WP_010931340.1|3387065_3387368_-	urease subunit gamma	NA	NA	NA	NA	NA
WP_003814832.1|3387468_3388323_-	urease accessory protein UreD	NA	NA	NA	NA	NA
WP_124740609.1|3388510_3388735_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929281.1|3388904_3389177_+	MerR family DNA-binding transcriptional regulator	NA	NA	NA	NA	NA
WP_010929282.1|3389594_3390002_-	GFA family protein	NA	NA	NA	NA	NA
WP_010931341.1|3390371_3391166_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010927102.1|3391266_3392502_+	methylaspartate ammonia-lyase	NA	NA	NA	NA	NA
WP_003814852.1|3392570_3393587_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931342.1|3393598_3394975_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_003814856.1|3394971_3396168_+	MFS transporter	NA	NA	NA	NA	NA
WP_003814858.1|3396164_3397703_-	SpoVR family protein	NA	NA	NA	NA	NA
WP_010931343.1|3397699_3398959_-	YeaH/YhbH family protein	NA	NA	NA	NA	NA
WP_005012067.1|3400899_3401850_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931344.1|3402616_3403711_-	CoA transferase	NA	NA	NA	NA	NA
WP_019247312.1|3403703_3405038_-	AMP-binding protein	NA	NA	NA	NA	NA
WP_003808193.1|3404991_3405675_-	TetR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003808195.1|3405700_3406864_-	acyl-CoA dehydrogenase family protein	NA	NA	NA	NA	NA
WP_004566224.1|3406860_3407862_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010931346.1|3407861_3408734_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010931347.1|3408730_3409480_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	27.8	1.9e-09
WP_010931348.1|3409476_3410268_-	ATP-binding cassette domain-containing protein	NA	A0A1M7XV31	Cedratvirus	29.4	1.7e-08
WP_010931349.1|3410264_3411404_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_047122778.1|3411679_3412465_+	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_014486103.1|3412498_3413281_+	crotonase/enoyl-CoA hydratase family protein	NA	NA	NA	NA	NA
WP_010931351.1|3413284_3413674_+	OB-fold domain-containing protein	NA	NA	NA	NA	NA
WP_010931352.1|3414813_3415677_+	MaoC family dehydratase N-terminal domain-containing protein	NA	NA	NA	NA	NA
WP_010931353.1|3415712_3416801_+	NAD(P)H-binding protein	NA	NA	NA	NA	NA
WP_010931070.1|3416797_3417748_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247959.1|3418101_3421080_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003818344.1|3422006_3422885_+	fatty acid desaturase	NA	NA	NA	NA	NA
WP_005013747.1|3424833_3425784_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931354.1|3425780_3426248_-	ribonuclease HI	NA	J9Q745	Salmonella_phage	50.7	5.6e-36
WP_010931355.1|3426290_3427061_-	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_010927090.1|3427081_3427882_+	hydroxyacylglutathione hydrolase	NA	NA	NA	NA	NA
WP_010931356.1|3427892_3429302_+	transglycosylase SLT domain-containing protein	NA	NA	NA	NA	NA
WP_003814739.1|3429396_3430182_+	enoyl-ACP reductase FabI	NA	NA	NA	NA	NA
WP_010930525.1|3430421_3431438_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003814742.1|3431545_3431938_-	OsmC family protein	NA	NA	NA	NA	NA
WP_010931357.1|3432075_3432756_+	tellurite resistance TerB family protein	NA	NA	NA	NA	NA
WP_023994844.1|3432760_3433732_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930179.1|3433827_3434778_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 28
NZ_CP010255	Bordetella pertussis strain I480 chromosome, complete genome	4106388	3440933	3500233	4106388	transposase,tRNA	Acinetobacter_phage(27.27%)	48	NA	NA
WP_003820957.1|3440933_3442697_+|tRNA	glutamine--tRNA ligase/YqeY domain fusion protein	tRNA	A0A222YZ70	Escherichia_phage	50.0	5.0e-162
WP_010931362.1|3442808_3443687_+	septum site-determining protein MinC	NA	NA	NA	NA	NA
WP_003814250.1|3443799_3444615_+	septum site-determining protein MinD	NA	NA	NA	NA	NA
WP_003814252.1|3444618_3444870_+	cell division topological specificity factor MinE	NA	NA	NA	NA	NA
WP_010929632.1|3444954_3445971_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003814254.1|3446301_3446523_-	glycine zipper 2TM domain-containing protein	NA	NA	NA	NA	NA
WP_019247693.1|3448883_3449801_-	DMT family transporter	NA	NA	NA	NA	NA
WP_019247692.1|3450298_3451507_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931365.1|3451586_3453158_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003814275.1|3453275_3454211_-	glycosyltransferase family 2 protein	NA	NA	NA	NA	NA
WP_003814277.1|3454399_3455344_+	LysR family transcriptional regulator	NA	A0A2P0ZL89	Lactobacillus_phage	23.2	8.4e-07
WP_003814283.1|3455911_3461629_+	excinuclease ABC subunit UvrA	NA	A0A1B1IVR3	uncultured_Mediterranean_phage	39.5	1.0e-195
WP_010931367.1|3461634_3462762_+	aminodeoxychorismate synthase component I	NA	S4VT78	Pandoravirus	37.8	3.8e-38
WP_003814287.1|3462817_3463444_+	aminotransferase class IV	NA	NA	NA	NA	NA
WP_010931363.1|3463715_3464732_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010927020.1|3464827_3465538_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010931368.1|3465534_3466524_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931369.1|3466619_3468251_+	AMP-binding protein	NA	NA	NA	NA	NA
WP_010931370.1|3468253_3468991_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247745.1|3469146_3470019_-|tRNA	tRNA threonylcarbamoyladenosine dehydratase	tRNA	NA	NA	NA	NA
WP_003814298.1|3470287_3471508_+	MFS transporter	NA	NA	NA	NA	NA
WP_003814300.1|3471504_3472164_+	gamma-glutamylcyclotransferase	NA	NA	NA	NA	NA
WP_003814302.1|3472235_3472868_+	pyridoxamine 5'-phosphate oxidase	NA	NA	NA	NA	NA
WP_010931372.1|3472897_3473416_+	flavin reductase family protein	NA	NA	NA	NA	NA
WP_010931373.1|3473426_3474536_+	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_003814312.1|3474582_3475437_+	formyltetrahydrofolate deformylase	NA	NA	NA	NA	NA
WP_010931374.1|3475438_3476341_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|3477563_3478514_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023997720.1|3480270_3481260_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247413.1|3481256_3481415_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931375.1|3481435_3482224_-	indole-3-glycerol phosphate synthase TrpC	NA	A0A0P0IR83	Acinetobacter_phage	53.0	5.1e-66
WP_003817833.1|3482220_3483252_-	anthranilate phosphoribosyltransferase	NA	A0A0N7IRD9	Acinetobacter_phage	42.7	7.4e-73
WP_003815390.1|3483270_3483834_-	aminodeoxychorismate/anthranilate synthase component II	NA	A0A0P0IKJ1	Acinetobacter_phage	62.1	1.1e-65
WP_010931376.1|3483889_3485410_-	anthranilate synthase component I	NA	S4VT78	Pandoravirus	32.1	9.0e-43
WP_010931377.1|3485673_3486378_-	phosphoglycolate phosphatase	NA	NA	NA	NA	NA
WP_003815384.1|3486385_3487123_-	ribulose-phosphate 3-epimerase	NA	NA	NA	NA	NA
WP_003815381.1|3487228_3487603_+	Co2+/Mg2+ efflux protein ApaG	NA	NA	NA	NA	NA
WP_003815379.1|3487645_3488935_+	murein transglycosylase A	NA	NA	NA	NA	NA
WP_010931378.1|3488931_3490101_+	UbiH/UbiF family hydroxylase	NA	NA	NA	NA	NA
WP_010931379.1|3490097_3490937_+	thiol:disulfide interchange protein DsbC	NA	NA	NA	NA	NA
WP_010931380.1|3490996_3491932_+	D-2-hydroxyacid dehydrogenase family protein	NA	A0A1J0F959	Only_Syngen_Nebraska_virus	27.7	6.4e-15
WP_005012067.1|3491944_3492895_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931381.1|3492993_3493956_-|tRNA	tRNA 2-thiocytidine(32) synthetase TtcA	tRNA	A0A0U2S5Z2	Escherichia_phage	64.5	4.6e-93
WP_003817821.1|3493987_3494347_-	dihydroneopterin aldolase	NA	NA	NA	NA	NA
WP_010931382.1|3494471_3495374_+	NAD(P)/FAD-dependent oxidoreductase	NA	G3MA85	Bacillus_virus	24.0	1.9e-08
WP_010931383.1|3495375_3497148_-	M61 family metallopeptidase	NA	NA	NA	NA	NA
WP_003815367.1|3497182_3497959_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_023852617.1|3499282_3500233_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 29
NZ_CP010255	Bordetella pertussis strain I480 chromosome, complete genome	4106388	3515171	3573244	4106388	transposase,tRNA	Planktothrix_phage(12.5%)	47	NA	NA
WP_005012808.1|3515171_3516122_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931392.1|3516250_3517384_-	M20 family metallopeptidase	NA	NA	NA	NA	NA
WP_010931393.1|3517427_3518333_-	hydrolase	NA	NA	NA	NA	NA
WP_023852622.1|3518335_3520036_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	32.7	1.0e-15
WP_010931394.1|3520032_3520953_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_003817805.1|3520960_3521938_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931395.1|3521996_3523031_-	succinylglutamate desuccinylase/aspartoacylase family protein	NA	NA	NA	NA	NA
WP_003815317.1|3525005_3525242_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023995266.1|3525368_3526232_-	NAD(P)H-hydrate dehydratase	NA	NA	NA	NA	NA
WP_003815315.1|3526320_3527142_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003815313.1|3527221_3527959_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010931397.1|3527955_3528948_-	nitronate monooxygenase	NA	NA	NA	NA	NA
WP_003817794.1|3529061_3529724_+	TetR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931399.1|3529768_3530917_+	acyl-CoA dehydrogenase family protein	NA	NA	NA	NA	NA
WP_010931400.1|3533240_3534191_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014486105.1|3534531_3535482_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|3535580_3536531_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_029443756.1|3536827_3537325_+	cupredoxin family protein	NA	NA	NA	NA	NA
WP_010931403.1|3537367_3539143_+	copper resistance system multicopper oxidase	NA	NA	NA	NA	NA
WP_010931404.1|3539150_3540017_+	copper resistance protein B	NA	NA	NA	NA	NA
WP_019249391.1|3540023_3540758_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010931406.1|3541927_3542722_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003815296.1|3543011_3543602_+	cysteine dioxygenase	NA	NA	NA	NA	NA
WP_010931407.1|3543635_3544964_-	amidase	NA	NA	NA	NA	NA
WP_010931408.1|3545038_3546184_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_014905478.1|3546295_3547294_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_033446233.1|3547256_3547691_+	carbon monoxide dehydrogenase	NA	NA	NA	NA	NA
WP_010929974.1|3549207_3550092_+	DMT family transporter	NA	NA	NA	NA	NA
WP_010929973.1|3550088_3551294_-	cardiolipin synthase ClsB	NA	NA	NA	NA	NA
WP_010929972.1|3551290_3552151_-	endonuclease/exonuclease/phosphatase family protein	NA	NA	NA	NA	NA
WP_003807038.1|3552263_3554054_-|tRNA	aspartate--tRNA ligase	tRNA	A0A1V0SAC0	Catovirus	25.5	6.5e-08
WP_003807035.1|3554094_3554760_-	DUF502 domain-containing protein	NA	A0A2I7S9X1	Vibrio_phage	28.4	6.7e-11
WP_010929971.1|3554760_3555069_-	FmdB family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929970.1|3555234_3556521_-	putative Na+/H+ antiporter	NA	NA	NA	NA	NA
WP_010929969.1|3557954_3558905_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929968.1|3560856_3562071_-	formate-dependent phosphoribosylglycinamide formyltransferase	NA	NA	NA	NA	NA
WP_003815171.1|3562176_3563166_+	KpsF/GutQ family sugar-phosphate isomerase	NA	A0A2P0VNK5	Tetraselmis_virus	37.7	4.3e-38
WP_003815172.1|3563162_3563771_+	HAD-IIIA family hydrolase	NA	E3T535	Cafeteria_roenbergensis_virus	26.1	5.2e-10
WP_010929967.1|3563783_3564413_+	LPS export ABC transporter periplasmic protein LptC	NA	NA	NA	NA	NA
WP_003815175.1|3564409_3565030_+	lipopolysaccharide transport periplasmic protein LptA	NA	NA	NA	NA	NA
WP_003815177.1|3565061_3565853_+	LPS export ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	27.4	9.5e-20
WP_010929966.1|3566704_3567160_+	PTS sugar transporter subunit IIA	NA	NA	NA	NA	NA
WP_010929965.1|3567178_3568105_+	HPr kinase/phosphorylase	NA	NA	NA	NA	NA
WP_010929964.1|3568158_3569445_-	cytochrome c	NA	NA	NA	NA	NA
WP_003815183.1|3570375_3571248_+	RNase adapter RapZ	NA	A0A1P8D5W0	Corynebacterium_phage	34.5	2.4e-08
WP_010929963.1|3571244_3572195_+	septal ring lytic transglycosylase RlpA family protein	NA	F5B3X9	Synechococcus_phage	47.2	6.9e-17
WP_005012067.1|3572293_3573244_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 31
NZ_CP010255	Bordetella pertussis strain I480 chromosome, complete genome	4106388	4028559	4081991	4106388	transposase	Planktothrix_phage(40.0%)	46	NA	NA
WP_010931661.1|4028559_4029510_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931662.1|4029679_4030906_+	bifunctional glutamate N-acetyltransferase/amino-acid acetyltransferase ArgJ	NA	NA	NA	NA	NA
WP_010931663.1|4031105_4031972_+	ATP-binding protein	NA	NA	NA	NA	NA
WP_003815027.1|4031964_4032927_+	Nudix family hydrolase	NA	A0A221LFJ1	Barns_Ness_breadcrumb_sponge_sobemo-like_virus	53.4	1.9e-06
WP_010927663.1|4033027_4033978_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|4034076_4035027_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929577.1|4035125_4036076_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994937.1|4036072_4037566_-	efflux transporter outer membrane subunit	NA	NA	NA	NA	NA
WP_003815032.1|4037562_4040670_-	multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_010931665.1|4040666_4043735_-	MdtB/MuxB family multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_010931666.1|4043731_4044982_-	MdtA/MuxA family multidrug efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
WP_003815038.1|4045162_4045924_-	cell division protein ZapD	NA	NA	NA	NA	NA
WP_019247320.1|4045956_4046607_-	dephospho-CoA kinase	NA	NA	NA	NA	NA
WP_003820519.1|4046609_4047449_-	prepilin peptidase	NA	NA	NA	NA	NA
WP_003815047.1|4047689_4048433_+	copper resistance protein NlpE N-terminal domain-containing protein	NA	NA	NA	NA	NA
WP_003815049.1|4048515_4048863_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003815051.1|4048960_4049803_-	pantoate--beta-alanine ligase	NA	NA	NA	NA	NA
WP_003815053.1|4049847_4050735_-	segregation/condensation protein A	NA	NA	NA	NA	NA
WP_003815055.1|4050761_4050950_-	DUF3460 family protein	NA	NA	NA	NA	NA
WP_010931669.1|4051047_4052505_+	DHA2 family efflux MFS transporter permease subunit	NA	NA	NA	NA	NA
WP_010931670.1|4052491_4054018_+	glycerol kinase GlpK	NA	NA	NA	NA	NA
WP_003815061.1|4054036_4054504_-	CopD family protein	NA	NA	NA	NA	NA
WP_010931671.1|4054503_4055526_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_169507388.1|4055646_4056366_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	39.9	4.7e-34
WP_003815066.1|4056441_4057542_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003815068.1|4057543_4058734_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003815070.1|4058853_4059870_-	amino acid ABC transporter substrate-binding protein	NA	A0A1B1IT51	uncultured_Mediterranean_phage	42.1	1.0e-71
WP_003815073.1|4060188_4060860_+	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	38.2	9.5e-29
WP_010927126.1|4060856_4061765_+	FtsX-like permease family protein	NA	NA	NA	NA	NA
WP_010931672.1|4061976_4062624_+	chemoreceptor glutamine deamidase CheD	NA	NA	NA	NA	NA
WP_010931673.1|4066475_4067552_+	A/G-specific adenine glycosylase	NA	NA	NA	NA	NA
WP_003815084.1|4067562_4068372_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003815086.1|4068461_4069235_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_023853189.1|4069235_4069400_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930363.1|4069417_4070368_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_077274100.1|4070256_4071279_+	CoA transferase	NA	NA	NA	NA	NA
WP_010931674.1|4071268_4072423_+	CoA transferase	NA	NA	NA	NA	NA
WP_010931675.1|4072462_4073875_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_019247370.1|4073999_4074866_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931677.1|4074867_4075692_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_023853488.1|4075688_4076450_+	nitroreductase	NA	M1I6Q5	Acanthocystis_turfacea_Chlorella_virus	31.0	2.0e-19
WP_003808010.1|4076530_4077217_-	TetR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931679.1|4077390_4078398_+	hydroxymethylglutaryl-CoA lyase	NA	NA	NA	NA	NA
WP_003819309.1|4078394_4079174_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010931680.1|4079231_4080494_+	CoA transferase	NA	NA	NA	NA	NA
WP_010929591.1|4081040_4081991_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
