The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP010250	Bordetella pertussis strain H788 chromosome, complete genome	4106823	27282	70035	4106823	tRNA,transposase	Synechococcus_phage(50.0%)	41	NA	NA
WP_010929577.1|27282_28233_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023995007.1|28314_28650_-	CoA transferase	NA	NA	NA	NA	NA
WP_010929578.1|28674_29109_-	OB-fold domain-containing protein	NA	NA	NA	NA	NA
WP_019247164.1|29141_30359_-	thiolase family protein	NA	NA	NA	NA	NA
WP_010929580.1|30364_30862_-	MaoC family dehydratase	NA	NA	NA	NA	NA
WP_019247165.1|31069_32005_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929582.1|32214_33006_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010929583.1|33048_34470_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_010929584.1|34625_35576_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814398.1|35572_36763_-	MFS transporter	NA	NA	NA	NA	NA
WP_010929585.1|37012_37924_+|tRNA	glycine--tRNA ligase subunit alpha	tRNA	NA	NA	NA	NA
WP_010929586.1|37925_40064_+|tRNA	glycine--tRNA ligase subunit beta	tRNA	NA	NA	NA	NA
WP_003814404.1|40060_40600_+	D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase	NA	NA	NA	NA	NA
WP_003814405.1|40603_41332_+	1-acyl-sn-glycerol-3-phosphate acyltransferase	NA	NA	NA	NA	NA
WP_010929587.1|41318_42212_+	M48 family metallopeptidase	NA	NA	NA	NA	NA
WP_019247766.1|42282_42678_+	lactoylglutathione lyase	NA	NA	NA	NA	NA
WP_003814412.1|42687_43218_+	peptide deformylase	NA	E3SLL2	Synechococcus_phage	35.4	3.7e-12
WP_010929588.1|43663_44614_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929589.1|45199_45748_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815265.1|45719_45956_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003815255.1|46083_46977_+	AEC family transporter	NA	NA	NA	NA	NA
WP_010929590.1|48146_49394_+	homoserine O-acetyltransferase	NA	NA	NA	NA	NA
WP_003817748.1|49390_50005_+	methionine biosynthesis protein MetW	NA	NA	NA	NA	NA
WP_010929591.1|50140_51091_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_029443813.1|51133_52390_+	muropeptide transporter	NA	NA	NA	NA	NA
WP_010929592.1|53621_54356_-	aspartate/glutamate racemase family protein	NA	NA	NA	NA	NA
WP_019247224.1|54361_54952_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.6	3.2e-20
WP_003817737.1|54976_55666_-	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_023852650.1|55662_56424_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010929594.1|56503_57403_-	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_005012808.1|57496_58447_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929595.1|59247_60474_-	type II toxin-antitoxin system HipA family toxin	NA	NA	NA	NA	NA
WP_047122776.1|60473_60887_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010929597.1|61076_62018_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019248755.1|62441_63416_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929599.1|63472_64054_-	DJ-1/PfpI family protein	NA	NA	NA	NA	NA
WP_010929600.1|64066_64369_-	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA	NA
WP_029443770.1|64487_65546_-	2Fe-2S iron-sulfur cluster binding domain-containing protein	NA	NA	NA	NA	NA
WP_019247832.1|65580_66852_-	TRAP transporter large permease	NA	NA	NA	NA	NA
WP_010929603.1|67481_68663_-	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929584.1|69084_70035_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 2
NZ_CP010250	Bordetella pertussis strain H788 chromosome, complete genome	4106823	77633	136107	4106823	tRNA,transposase	Planktothrix_phage(22.22%)	54	NA	NA
WP_005012067.1|77633_78584_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_041166334.1|78658_79603_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929608.1|79599_81474_-	polysaccharide biosynthesis protein	NA	A0A2P1ELS8	Moumouvirus	26.9	2.0e-23
WP_003807102.1|82821_83526_-	DUF2837 family protein	NA	NA	NA	NA	NA
WP_003807104.1|83522_84629_-	glycosyltransferase family 4 protein	NA	NA	NA	NA	NA
WP_010929610.1|84890_85484_-	sugar transferase	NA	NA	NA	NA	NA
WP_023853419.1|85480_86668_-	DegT/DnrJ/EryC1/StrS family aminotransferase	NA	NA	NA	NA	NA
WP_010929612.1|86730_87990_-	glycosyltransferase family 4 protein	NA	NA	NA	NA	NA
WP_010929613.1|88013_89102_-	UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing)	NA	A0A0N9R0B2	Chrysochromulina_ericina_virus	36.3	4.8e-46
WP_010929614.1|89109_90210_-	DegT/DnrJ/EryC1/StrS family aminotransferase	NA	A0A2K9L0G1	Tupanvirus	29.7	3.3e-31
WP_003807114.1|90213_90789_-	N-acetyltransferase	NA	NA	NA	NA	NA
WP_003807115.1|90792_91845_-	Gfo/Idh/MocA family oxidoreductase	NA	NA	NA	NA	NA
WP_010929615.1|91975_92983_+	lipopolysaccharide heptosyltransferase I	NA	NA	NA	NA	NA
WP_010929616.1|92984_94271_+	3-deoxy-D-manno-octulosonic acid transferase	NA	NA	NA	NA	NA
WP_003807124.1|94287_94443_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929617.1|94467_95271_-	type III pantothenate kinase	NA	NA	NA	NA	NA
WP_010929618.1|95267_96134_-	biotin--[acetyl-CoA-carboxylase] ligase	NA	NA	NA	NA	NA
WP_010929619.1|96208_97339_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_003807131.1|97338_98178_+	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	32.4	9.1e-21
WP_010929620.1|99110_99713_+	membrane integrity-associated transporter subunit PqiC	NA	NA	NA	NA	NA
WP_010929621.1|99742_100396_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003807138.1|100528_101785_+	D-alanyl-D-alanine carboxypeptidase	NA	B6DZZ7	Stx2-converting_phage	40.5	6.2e-66
WP_010929622.1|101832_102732_+	D-amino acid aminotransferase	NA	NA	NA	NA	NA
WP_003818417.1|102807_103083_+	YbeD family protein	NA	NA	NA	NA	NA
WP_010929623.1|103090_103753_+	lipoyl(octanoyl) transferase LipB	NA	NA	NA	NA	NA
WP_003807146.1|103814_104816_+	lipoyl synthase	NA	NA	NA	NA	NA
WP_003807148.1|104830_105379_-	dTDP-4-dehydrorhamnose 3,5-epimerase	NA	A0A291LA62	Escherichia_phage	53.4	3.7e-47
WP_010929624.1|105436_106333_-	dTDP-4-dehydrorhamnose reductase	NA	NA	NA	NA	NA
WP_010929625.1|106329_107391_-	dTDP-glucose 4,6-dehydratase	NA	A0A1D7XFE8	Escherichia_phage	44.8	1.6e-78
WP_010929626.1|107426_108377_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929627.1|109276_110470_+	cystathionine beta-lyase	NA	NA	NA	NA	NA
WP_010929628.1|110551_111181_-	thiol:disulfide interchange protein DsbA/DsbL	NA	NA	NA	NA	NA
WP_010927242.1|111242_111926_-	SPOR domain-containing protein	NA	NA	NA	NA	NA
WP_023853376.1|111935_113618_-|tRNA	arginine--tRNA ligase	tRNA	NA	NA	NA	NA
WP_003815933.1|113905_114253_+	DUF1840 domain-containing protein	NA	NA	NA	NA	NA
WP_003815930.1|114343_114661_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931363.1|114943_115960_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003815929.1|116035_116836_-	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
WP_003815927.1|116832_117708_-	sugar ABC transporter permease	NA	NA	NA	NA	NA
WP_010929633.1|117718_119011_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929634.1|119053_120094_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.7	6.0e-22
WP_010929635.1|120199_121021_-	phosphodiesterase	NA	NA	NA	NA	NA
WP_005012067.1|121121_122072_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014905488.1|122170_123076_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	31.7	9.8e-21
WP_003815918.1|123072_123906_-	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_010929637.1|124742_125753_-	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_019247800.1|125749_126139_-	substrate-binding domain-containing protein	NA	NA	NA	NA	NA
WP_010929638.1|127032_128286_+	amidase	NA	NA	NA	NA	NA
WP_010929639.1|128376_130077_-	2-isopropylmalate synthase	NA	NA	NA	NA	NA
WP_010929640.1|130503_131151_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023853393.1|131149_132589_+	RNA polymerase factor sigma-54	NA	NA	NA	NA	NA
WP_003815905.1|132681_132984_+	bacterioferritin-associated ferredoxin	NA	NA	NA	NA	NA
WP_010929512.1|133011_133890_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|135156_136107_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 3
NZ_CP010250	Bordetella pertussis strain H788 chromosome, complete genome	4106823	164892	225403	4106823	protease,tRNA,transposase	Diachasmimorpha_longicaudata_entomopoxvirus(11.11%)	51	NA	NA
WP_005015810.1|164892_165843_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929659.1|167286_168189_-	YgcG family protein	NA	NA	NA	NA	NA
WP_003815889.1|168166_168796_-	LemA family protein	NA	NA	NA	NA	NA
WP_010929660.1|169078_170509_+	DEAD/DEAH box helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	29.8	5.8e-44
WP_010929661.1|170542_171172_+	LysE family transporter	NA	NA	NA	NA	NA
WP_003815895.1|171220_172828_+	peptide chain release factor 3	NA	A0A2K9L6L3	Tupanvirus	37.8	9.3e-14
WP_010929663.1|172852_173536_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815898.1|173617_174094_-	bacterioferritin	NA	NA	NA	NA	NA
WP_010929591.1|174300_175251_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929664.1|176366_176894_+	META domain-containing protein	NA	NA	NA	NA	NA
WP_010929665.1|176985_177801_+	META and DUF4377 domain-containing protein	NA	NA	NA	NA	NA
WP_003808370.1|177861_178596_+	sulfurtransferase	NA	NA	NA	NA	NA
WP_010929666.1|178633_180712_-|tRNA	methionine--tRNA ligase	tRNA	A0A1V0SHR2	Klosneuvirus	23.6	1.5e-27
WP_003808374.1|180961_181234_-	hypothetical protein	NA	NA	NA	NA	NA
WP_033446322.1|181335_182421_+	iron-sulfur cluster carrier protein ApbC	NA	NA	NA	NA	NA
WP_010929668.1|182424_184329_+	BamA/TamA family outer membrane protein	NA	NA	NA	NA	NA
WP_014486044.1|184325_188000_+	translocation/assembly module TamB domain-containing protein	NA	NA	NA	NA	NA
WP_010929670.1|188060_188624_+	dCTP deaminase	NA	S5VM63	Pseudomonas_phage	75.3	2.6e-72
WP_003808385.1|188631_189054_-	VOC family protein	NA	NA	NA	NA	NA
WP_010929671.1|189081_189501_-	VOC family protein	NA	NA	NA	NA	NA
WP_076879599.1|189529_190003_-	GNAT family N-acetyltransferase	NA	Q9AZG4	Lactococcus_phage	31.1	2.2e-11
WP_003808391.1|190102_190600_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003808393.1|190754_193025_+	arginine/lysine/ornithine decarboxylase	NA	NA	NA	NA	NA
WP_010929672.1|193073_194306_+	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010929591.1|194404_195355_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929673.1|195457_196093_+	superoxide dismutase	NA	Q56AR7	Bacillus_thuringiensis_phage	73.8	2.8e-83
WP_019248671.1|196089_196983_+	ZIP family metal transporter	NA	NA	NA	NA	NA
WP_010929675.1|197377_198478_+	glycine cleavage system aminomethyltransferase GcvT	NA	NA	NA	NA	NA
WP_010929676.1|198559_198934_+	glycine cleavage system protein GcvH	NA	NA	NA	NA	NA
WP_010929677.1|198993_201858_+	aminomethyl-transferring glycine dehydrogenase	NA	E3SN07	Prochlorococcus_phage	51.4	1.2e-261
WP_010929678.1|202002_202743_-	FadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929679.1|202812_204024_+	CoA transferase	NA	NA	NA	NA	NA
WP_010929680.1|204052_205021_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931070.1|205634_206585_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929699.1|206741_207065_+	phosphate starvation-inducible protein	NA	NA	NA	NA	NA
WP_023853200.1|207169_208210_-	cyclase family protein	NA	NA	NA	NA	NA
WP_010929697.1|208215_208995_-	3-oxoadipate enol-lactonase	NA	NA	NA	NA	NA
WP_003807672.1|209040_209337_-	YciI family protein	NA	NA	NA	NA	NA
WP_003807674.1|209362_209638_-	muconolactone Delta-isomerase	NA	NA	NA	NA	NA
WP_003819086.1|209694_210339_-	CoA transferase subunit B	NA	NA	NA	NA	NA
WP_010929696.1|210338_211025_-	3-oxoacid CoA-transferase subunit A	NA	NA	NA	NA	NA
WP_010929695.1|211154_212006_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929694.1|212056_212782_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010929693.1|212813_214163_-	short-chain fatty acid transporter	NA	NA	NA	NA	NA
WP_010929692.1|214274_215207_-	3-hydroxyacyl-CoA dehydrogenase family protein	NA	NA	NA	NA	NA
WP_033446321.1|215664_218460_-|protease	serine protease autotransporter SphB1	protease	NA	NA	NA	NA
WP_010929690.1|219053_221996_-	phosphoenolpyruvate carboxylase	NA	NA	NA	NA	NA
WP_010929689.1|222067_222787_+	7-cyano-7-deazaguanine synthase QueC	NA	A0A0A0RPC6	Escherichia_phage	43.9	8.0e-50
WP_010929688.1|222825_223374_-	N-acetyltransferase	NA	A0A2H4J136	uncultured_Caudovirales_phage	41.7	1.2e-21
WP_010929687.1|223528_224428_+	virginiamycin B lyase	NA	NA	NA	NA	NA
WP_014905499.1|224452_225403_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 4
NZ_CP010250	Bordetella pertussis strain H788 chromosome, complete genome	4106823	233335	286925	4106823	protease,tRNA,transposase	Bacillus_phage(25.0%)	46	NA	NA
WP_005012067.1|233335_234286_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010927663.1|234372_235323_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930742.1|235319_236270_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929700.1|236368_237166_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_003814363.1|238115_238526_+	carboxymuconolactone decarboxylase family protein	NA	NA	NA	NA	NA
WP_003814358.1|239547_240291_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814356.1|240334_241378_-	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003814355.1|241548_243651_+	TRAP transporter large permease subunit	NA	NA	NA	NA	NA
WP_003814351.1|245061_246018_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929701.1|246036_246528_-	2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase	NA	NA	NA	NA	NA
WP_010929702.1|246524_247880_-	polynucleotide adenylyltransferase PcnB	NA	A0A1B1IVF3	uncultured_Mediterranean_phage	36.8	3.4e-25
WP_010929703.1|247880_248579_-	HAD-IB family hydrolase	NA	NA	NA	NA	NA
WP_010929704.1|248575_249277_-	DnaA regulatory inactivator Hda	NA	NA	NA	NA	NA
WP_003814339.1|249529_250579_+	phosphoribosylformylglycinamidine cyclo-ligase	NA	Q58MH8	Prochlorococcus_phage	43.6	5.6e-68
WP_003814337.1|250684_251626_-|tRNA	tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA	tRNA	NA	NA	NA	NA
WP_010929705.1|251622_253512_-	DNA mismatch repair endonuclease MutL	NA	A0A1B2LRQ5	Wolbachia_phage	32.8	3.3e-79
WP_003814332.1|253598_254237_+	VTT domain-containing protein	NA	NA	NA	NA	NA
WP_019247543.1|254379_255765_-	N-acetylmuramoyl-L-alanine amidase	NA	A0A2H4JCM7	uncultured_Caudovirales_phage	30.3	4.5e-17
WP_010929706.1|255695_256232_-|tRNA	bifunctional alanine racemase/tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE	tRNA	NA	NA	NA	NA
WP_010929707.1|256383_257775_+	class II fumarate hydratase	NA	NA	NA	NA	NA
WP_010929708.1|257791_258772_-	AEC family transporter	NA	NA	NA	NA	NA
WP_003814324.1|258907_259891_+	tripartite tricarboxylate transporter substrate binding protein BugE	NA	NA	NA	NA	NA
WP_010929709.1|259955_260855_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814321.1|260961_262716_+	gamma-glutamyltransferase	NA	NA	NA	NA	NA
WP_010929710.1|262723_263848_-	CoA transferase	NA	NA	NA	NA	NA
WP_010929711.1|263861_264842_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929712.1|267083_267629_+	GbsR/MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929713.1|267712_269332_+	cytochrome d ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
WP_004567834.1|269347_270502_+	cytochrome d ubiquinol oxidase subunit II	NA	NA	NA	NA	NA
WP_003817696.1|270515_270641_+	cytochrome bd-I oxidase subunit CydX	NA	NA	NA	NA	NA
WP_010929714.1|270637_272389_+	thiol reductant ABC exporter subunit CydD	NA	W8CYL7	Bacillus_phage	23.8	3.4e-09
WP_010929715.1|272385_274065_+	thiol reductant ABC exporter subunit CydC	NA	W8CYL7	Bacillus_phage	27.6	3.6e-16
WP_010929716.1|274127_274676_+	adenine phosphoribosyltransferase	NA	A0A1V0SKE5	Klosneuvirus	43.1	1.3e-28
WP_010929717.1|275818_276097_+	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|277140_278091_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929718.1|278369_278531_+	DUF4224 domain-containing protein	NA	NA	NA	NA	NA
WP_010929719.1|278538_278679_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815821.1|279197_279647_-|protease	ClpXP protease specificity-enhancing factor	protease	NA	NA	NA	NA
WP_003815819.1|279656_280268_-	glutathione S-transferase N-terminal domain-containing protein	NA	NA	NA	NA	NA
WP_019247426.1|280426_281281_-	cytochrome c1	NA	NA	NA	NA	NA
WP_003815816.1|281300_282683_-	cytochrome bc complex cytochrome b subunit	NA	NA	NA	NA	NA
WP_003815815.1|282747_283389_-	ubiquinol-cytochrome c reductase iron-sulfur subunit	NA	NA	NA	NA	NA
WP_010929721.1|283528_283987_+	large conductance mechanosensitive channel protein MscL	NA	NA	NA	NA	NA
WP_010927226.1|284011_284788_-	Nif3-like dinuclear metal center hexameric protein	NA	NA	NA	NA	NA
WP_014906092.1|284841_285978_+	trypsin-like peptidase domain-containing protein	NA	W5SAB9	Pithovirus	31.2	1.2e-07
WP_005015810.1|285974_286925_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 5
NZ_CP010250	Bordetella pertussis strain H788 chromosome, complete genome	4106823	371459	432323	4106823	transposase,tRNA	Caulobacter_phage(16.67%)	57	NA	NA
WP_010929770.1|371459_372914_-|tRNA	Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatB	tRNA	NA	NA	NA	NA
WP_010929771.1|372916_374455_-|tRNA	Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatA	tRNA	NA	NA	NA	NA
WP_010929772.1|374457_374766_-|tRNA	Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatC	tRNA	NA	NA	NA	NA
WP_003815204.1|374996_376040_+	rod shape-determining protein	NA	NA	NA	NA	NA
WP_010929773.1|376128_377013_+	rod shape-determining protein MreC	NA	NA	NA	NA	NA
WP_003815202.1|376999_377563_+	rod shape-determining protein MreD	NA	NA	NA	NA	NA
WP_003815201.1|377576_379529_+	penicillin-binding protein 2	NA	NA	NA	NA	NA
WP_003815198.1|379525_380662_+	rod shape-determining protein RodA	NA	NA	NA	NA	NA
WP_010929775.1|380687_381743_-	Ldh family oxidoreductase	NA	NA	NA	NA	NA
WP_010929776.1|381753_383247_-	DASS family sodium-coupled anion symporter	NA	NA	NA	NA	NA
WP_010927138.1|383459_384035_-	nucleoid occlusion factor SlmA	NA	NA	NA	NA	NA
WP_010929777.1|384084_384831_-	pyrimidine 5'-nucleotidase	NA	NA	NA	NA	NA
WP_010929778.1|384830_385733_-	acetylglutamate kinase	NA	NA	NA	NA	NA
WP_010929779.1|385994_386783_+	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003815191.1|386923_387415_-	TlpA family protein disulfide reductase	NA	NA	NA	NA	NA
WP_003815190.1|387411_388155_-	BON domain-containing protein	NA	NA	NA	NA	NA
WP_033446211.1|388151_388745_-	phosphoheptose isomerase	NA	A0A067XQR2	Caulobacter_phage	34.8	5.6e-17
WP_100208326.1|388753_389230_-	YraN family protein	NA	NA	NA	NA	NA
WP_010929780.1|389354_390293_+	16S rRNA (cytidine(1402)-2'-O)-methyltransferase	NA	NA	NA	NA	NA
WP_010929781.1|390289_390862_+	methylated-DNA--[protein]-cysteine S-methyltransferase	NA	M1PFU9	Streptococcus_phage	42.5	3.2e-25
WP_005012067.1|390858_391809_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010927231.1|391945_392863_+	reductase	NA	NA	NA	NA	NA
WP_003815842.1|392859_393108_+	glutaredoxin family protein	NA	NA	NA	NA	NA
WP_003815840.1|393104_394310_+	CoA transferase	NA	NA	NA	NA	NA
WP_014486045.1|394382_395378_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_014486046.1|395400_396621_-	CoA transferase	NA	NA	NA	NA	NA
WP_014486047.1|396617_397262_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019248476.1|398992_399802_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_014486048.1|400106_401060_+	thioredoxin-disulfide reductase	NA	A0A2I2L5E1	Orpheovirus	42.5	5.6e-59
WP_014486049.1|401158_402142_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014486050.1|402068_402770_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_014486051.1|402818_403589_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_019247259.1|403585_404764_-	CoA transferase	NA	NA	NA	NA	NA
WP_014486052.1|404931_406638_-	thiamine pyrophosphate-requiring protein	NA	NA	NA	NA	NA
WP_014486053.1|406634_407531_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_014486054.1|407571_409161_-	sulfurtransferase	NA	NA	NA	NA	NA
WP_003807867.1|409210_410203_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003807865.1|410271_410871_-	hypothetical protein	NA	NA	NA	NA	NA
WP_014486055.1|411331_412312_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929577.1|412387_413338_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_047122777.1|413426_414341_+	DMT family transporter	NA	NA	NA	NA	NA
WP_010929782.1|414337_414997_+	LysE family translocator	NA	NA	NA	NA	NA
WP_003814709.1|415086_416010_+	alpha/beta fold hydrolase	NA	A0A1C9C5K3	Heterosigma_akashiwo_virus	27.2	4.8e-07
WP_010929783.1|416015_416471_-	multidrug/biocide efflux PACE transporter	NA	NA	NA	NA	NA
WP_010929784.1|416467_417571_-	ChbG/HpnK family deacetylase	NA	NA	NA	NA	NA
WP_157734664.1|417526_417799_+	GtrA family protein	NA	NA	NA	NA	NA
WP_010927086.1|417758_419378_-	glycosyltransferase family 39 protein	NA	NA	NA	NA	NA
WP_003814720.1|419374_420433_-	glycosyltransferase family 2 protein	NA	I1TED8	Salmonella_phage	40.5	2.8e-59
WP_033446199.1|420562_421057_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_022997984.1|421149_422127_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929785.1|422322_423528_+	sodium/glutamate symporter	NA	NA	NA	NA	NA
WP_010929786.1|423524_425036_+	TAXI family TRAP transporter solute-binding subunit	NA	NA	NA	NA	NA
WP_003814726.1|425051_426365_-	short-chain fatty acid transporter	NA	NA	NA	NA	NA
WP_003814728.1|426555_426735_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003814730.1|427144_427879_-	DNA polymerase III subunit epsilon	NA	A0A1X9SH08	Bradyrhizobium_phage	43.8	1.4e-41
WP_010929577.1|430323_431274_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|431372_432323_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 6
NZ_CP010250	Bordetella pertussis strain H788 chromosome, complete genome	4106823	469551	587446	4106823	tRNA,transposase	Acinetobacter_phage(22.22%)	102	NA	NA
WP_005012067.1|469551_470502_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929956.1|470600_471551_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929957.1|472273_473548_+|tRNA	glutamyl-tRNA reductase	tRNA	NA	NA	NA	NA
WP_003807618.1|473634_474717_+	peptide chain release factor 1	NA	A0A0S4KWG0	Pseudomonas_phage	40.7	3.3e-07
WP_010929958.1|474727_475540_+	peptide chain release factor N(5)-glutamine methyltransferase	NA	NA	NA	NA	NA
WP_010929959.1|475576_475903_+	Grx4 family monothiol glutaredoxin	NA	NA	NA	NA	NA
WP_003807624.1|475907_476468_+	UbiX family flavin prenyltransferase	NA	NA	NA	NA	NA
WP_003819054.1|476708_477701_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929960.1|477719_478715_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_023853194.1|478730_480107_+	FAD binding domain-containing protein	NA	A0A0P0IVM8	Acinetobacter_phage	37.3	2.4e-18
WP_010929962.1|480099_482481_+	xanthine dehydrogenase family protein molybdopterin-binding subunit	NA	NA	NA	NA	NA
WP_019247263.1|482497_482887_+	SRPBCC family protein	NA	NA	NA	NA	NA
WP_020699695.1|483013_483244_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|483348_484299_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929963.1|484397_485348_-	septal ring lytic transglycosylase RlpA family protein	NA	F5B3X9	Synechococcus_phage	47.2	6.9e-17
WP_003815183.1|485344_486217_-	RNase adapter RapZ	NA	A0A1P8D5W0	Corynebacterium_phage	34.5	2.4e-08
WP_010929964.1|487147_488434_+	cytochrome c	NA	NA	NA	NA	NA
WP_010929965.1|488487_489414_-	HPr kinase/phosphorylase	NA	NA	NA	NA	NA
WP_010929966.1|489432_489888_-	PTS sugar transporter subunit IIA	NA	NA	NA	NA	NA
WP_003815177.1|490739_491531_-	LPS export ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	27.4	9.5e-20
WP_003815175.1|491562_492183_-	lipopolysaccharide transport periplasmic protein LptA	NA	NA	NA	NA	NA
WP_010929967.1|492179_492809_-	LPS export ABC transporter periplasmic protein LptC	NA	NA	NA	NA	NA
WP_003815172.1|492821_493430_-	HAD-IIIA family hydrolase	NA	E3T535	Cafeteria_roenbergensis_virus	26.1	5.2e-10
WP_003815171.1|493426_494416_-	KpsF/GutQ family sugar-phosphate isomerase	NA	A0A2P0VNK5	Tetraselmis_virus	37.7	4.3e-38
WP_010929968.1|494521_495736_+	formate-dependent phosphoribosylglycinamide formyltransferase	NA	NA	NA	NA	NA
WP_010929969.1|497687_498638_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929970.1|500071_501358_+	putative Na+/H+ antiporter	NA	NA	NA	NA	NA
WP_010929971.1|501523_501832_+	FmdB family transcriptional regulator	NA	NA	NA	NA	NA
WP_003807035.1|501832_502498_+	DUF502 domain-containing protein	NA	A0A2I7S9X1	Vibrio_phage	28.4	6.7e-11
WP_003807038.1|502538_504329_+|tRNA	aspartate--tRNA ligase	tRNA	A0A1V0SAC0	Catovirus	25.5	6.5e-08
WP_010929972.1|504441_505302_+	endonuclease/exonuclease/phosphatase family protein	NA	NA	NA	NA	NA
WP_010929973.1|505298_506504_+	cardiolipin synthase ClsB	NA	NA	NA	NA	NA
WP_010929974.1|506500_507385_-	DMT family transporter	NA	NA	NA	NA	NA
WP_033446233.1|508901_509336_-	carbon monoxide dehydrogenase	NA	NA	NA	NA	NA
WP_014905478.1|509298_510297_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931408.1|510408_511554_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931407.1|511628_512957_+	amidase	NA	NA	NA	NA	NA
WP_003815296.1|512990_513581_-	cysteine dioxygenase	NA	NA	NA	NA	NA
WP_010931406.1|513870_514665_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019249391.1|515834_516569_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010931404.1|516575_517442_-	copper resistance protein B	NA	NA	NA	NA	NA
WP_010931403.1|517449_519225_-	copper resistance system multicopper oxidase	NA	NA	NA	NA	NA
WP_029443756.1|519267_519765_-	cupredoxin family protein	NA	NA	NA	NA	NA
WP_005013747.1|520061_521012_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014486105.1|521110_522061_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931400.1|522401_523352_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931399.1|525675_526824_-	acyl-CoA dehydrogenase family protein	NA	NA	NA	NA	NA
WP_003817794.1|526868_527531_-	TetR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931397.1|527644_528637_+	nitronate monooxygenase	NA	NA	NA	NA	NA
WP_003815313.1|528633_529371_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003815315.1|529450_530272_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010931396.1|530360_531224_+	NAD(P)H-hydrate dehydratase	NA	NA	NA	NA	NA
WP_003815317.1|531350_531587_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931395.1|533561_534596_+	succinylglutamate desuccinylase/aspartoacylase family protein	NA	NA	NA	NA	NA
WP_003817805.1|534654_535632_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931394.1|535639_536560_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_023852622.1|536556_538257_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	32.7	1.0e-15
WP_010931393.1|538259_539165_+	hydrolase	NA	NA	NA	NA	NA
WP_010931392.1|539208_540342_+	M20 family metallopeptidase	NA	NA	NA	NA	NA
WP_005012808.1|540470_541421_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931391.1|541519_543589_-	UvrD-helicase domain-containing protein	NA	A7KV33	Bacillus_phage	37.3	2.6e-101
WP_019247688.1|543631_545734_-	primosomal protein N'	NA	NA	NA	NA	NA
WP_010931389.1|546040_547117_-	uroporphyrinogen decarboxylase	NA	NA	NA	NA	NA
WP_010931388.1|547192_548077_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003815341.1|548259_548682_-	F0F1 ATP synthase subunit epsilon	NA	NA	NA	NA	NA
WP_010931387.1|548691_550092_-	F0F1 ATP synthase subunit beta	NA	NA	NA	NA	NA
WP_003817813.1|550134_551040_-	F0F1 ATP synthase subunit gamma	NA	NA	NA	NA	NA
WP_010931386.1|551138_552680_-	F0F1 ATP synthase subunit alpha	NA	NA	NA	NA	NA
WP_003815348.1|552714_553254_-	F0F1 ATP synthase subunit delta	NA	NA	NA	NA	NA
WP_010931385.1|553266_553737_-	F0F1 ATP synthase subunit B	NA	NA	NA	NA	NA
WP_003815363.1|553874_554117_-	F0F1 ATP synthase subunit C	NA	NA	NA	NA	NA
WP_003815364.1|554233_555115_-	F0F1 ATP synthase subunit A	NA	NA	NA	NA	NA
WP_003815365.1|555187_555508_-	ATP synthase subunit I	NA	NA	NA	NA	NA
WP_023852617.1|556359_557310_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003815367.1|558633_559410_-	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_010931383.1|559444_561217_+	M61 family metallopeptidase	NA	NA	NA	NA	NA
WP_010931382.1|561218_562121_-	NAD(P)/FAD-dependent oxidoreductase	NA	G3MA85	Bacillus_virus	24.0	1.9e-08
WP_003817821.1|562245_562605_+	dihydroneopterin aldolase	NA	NA	NA	NA	NA
WP_010931381.1|562636_563599_+|tRNA	tRNA 2-thiocytidine(32) synthetase TtcA	tRNA	A0A0U2S5Z2	Escherichia_phage	64.5	4.6e-93
WP_005012067.1|563697_564648_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931380.1|564660_565596_-	D-2-hydroxyacid dehydrogenase family protein	NA	A0A1J0F959	Only_Syngen_Nebraska_virus	27.7	6.4e-15
WP_010931379.1|565655_566495_-	thiol:disulfide interchange protein DsbC	NA	NA	NA	NA	NA
WP_010931378.1|566491_567661_-	UbiH/UbiF family hydroxylase	NA	NA	NA	NA	NA
WP_003815379.1|567657_568947_-	murein transglycosylase A	NA	NA	NA	NA	NA
WP_003815381.1|568989_569364_-	Co2+/Mg2+ efflux protein ApaG	NA	NA	NA	NA	NA
WP_003815384.1|569469_570207_+	ribulose-phosphate 3-epimerase	NA	NA	NA	NA	NA
WP_010931377.1|570214_570919_+	phosphoglycolate phosphatase	NA	NA	NA	NA	NA
WP_010931376.1|571182_572703_+	anthranilate synthase component I	NA	S4VT78	Pandoravirus	32.1	9.0e-43
WP_003815390.1|572758_573322_+	aminodeoxychorismate/anthranilate synthase component II	NA	A0A0P0IKJ1	Acinetobacter_phage	62.1	1.1e-65
WP_003817833.1|573340_574372_+	anthranilate phosphoribosyltransferase	NA	A0A0N7IRD9	Acinetobacter_phage	42.7	7.4e-73
WP_010931375.1|574368_575157_+	indole-3-glycerol phosphate synthase TrpC	NA	A0A0P0IR83	Acinetobacter_phage	53.0	5.1e-66
WP_019247413.1|575177_575336_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023997720.1|575332_576322_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|578078_579029_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931374.1|580251_581154_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814312.1|581155_582010_-	formyltetrahydrofolate deformylase	NA	NA	NA	NA	NA
WP_010931373.1|582056_583166_-	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010931372.1|583176_583695_-	flavin reductase family protein	NA	NA	NA	NA	NA
WP_003814302.1|583724_584357_-	pyridoxamine 5'-phosphate oxidase	NA	NA	NA	NA	NA
WP_003814300.1|584428_585088_-	gamma-glutamylcyclotransferase	NA	NA	NA	NA	NA
WP_003814298.1|585084_586305_-	MFS transporter	NA	NA	NA	NA	NA
WP_019247745.1|586573_587446_+|tRNA	tRNA threonylcarbamoyladenosine dehydratase	tRNA	NA	NA	NA	NA
>prophage 7
NZ_CP010250	Bordetella pertussis strain H788 chromosome, complete genome	4106823	591860	655693	4106823	tRNA,transposase	Pandoravirus(12.5%)	47	NA	NA
WP_010931363.1|591860_592877_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003814287.1|593148_593775_-	aminotransferase class IV	NA	NA	NA	NA	NA
WP_010931367.1|593830_594958_-	aminodeoxychorismate synthase component I	NA	S4VT78	Pandoravirus	37.8	3.8e-38
WP_003814283.1|594963_600681_-	excinuclease ABC subunit UvrA	NA	A0A1B1IVR3	uncultured_Mediterranean_phage	39.5	1.0e-195
WP_003814277.1|601248_602193_-	LysR family transcriptional regulator	NA	A0A2P0ZL89	Lactobacillus_phage	23.2	8.4e-07
WP_003814275.1|602381_603317_+	glycosyltransferase family 2 protein	NA	NA	NA	NA	NA
WP_010931365.1|603434_605006_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019247692.1|605085_606294_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_019247693.1|606791_607709_+	DMT family transporter	NA	NA	NA	NA	NA
WP_003814254.1|610069_610291_+	glycine zipper 2TM domain-containing protein	NA	NA	NA	NA	NA
WP_010929632.1|610621_611638_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003814252.1|611722_611974_-	cell division topological specificity factor MinE	NA	NA	NA	NA	NA
WP_003814250.1|611977_612793_-	septum site-determining protein MinD	NA	NA	NA	NA	NA
WP_010931362.1|612905_613784_-	septum site-determining protein MinC	NA	NA	NA	NA	NA
WP_003820957.1|613895_615659_-|tRNA	glutamine--tRNA ligase/YqeY domain fusion protein	tRNA	A0A222YZ70	Escherichia_phage	50.0	5.0e-162
WP_010931361.1|615774_617115_+	cytochrome ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
WP_010927010.1|618184_619609_-	HAMP domain-containing protein	NA	NA	NA	NA	NA
WP_003814239.1|619608_620310_-	response regulator	NA	W8CYM9	Bacillus_phage	36.6	5.6e-32
WP_010930179.1|621814_622765_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994844.1|622860_623832_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931357.1|623836_624517_-	tellurite resistance TerB family protein	NA	NA	NA	NA	NA
WP_003814742.1|624654_625047_+	OsmC family protein	NA	NA	NA	NA	NA
WP_010931561.1|625154_626171_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003814739.1|626410_627196_-	enoyl-ACP reductase FabI	NA	NA	NA	NA	NA
WP_010931356.1|627290_628700_-	transglycosylase SLT domain-containing protein	NA	NA	NA	NA	NA
WP_010927090.1|628710_629511_-	hydroxyacylglutathione hydrolase	NA	NA	NA	NA	NA
WP_010931355.1|629531_630302_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_010931354.1|630344_630812_+	ribonuclease HI	NA	J9Q745	Salmonella_phage	50.7	5.6e-36
WP_005013747.1|630808_631759_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003818344.1|633707_634586_-	fatty acid desaturase	NA	NA	NA	NA	NA
WP_019247959.1|635512_638491_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931070.1|638844_639795_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931353.1|639791_640880_-	NAD(P)H-binding protein	NA	NA	NA	NA	NA
WP_010931352.1|640915_641779_-	MaoC family dehydratase N-terminal domain-containing protein	NA	NA	NA	NA	NA
WP_010931351.1|642918_643308_-	OB-fold domain-containing protein	NA	NA	NA	NA	NA
WP_014486103.1|643311_644094_-	crotonase/enoyl-CoA hydratase family protein	NA	NA	NA	NA	NA
WP_047122778.1|644127_644913_-	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010931349.1|645188_646328_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931348.1|646324_647116_+	ATP-binding cassette domain-containing protein	NA	A0A1M7XV31	Cedratvirus	29.4	1.7e-08
WP_010931347.1|647112_647862_+	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	27.8	1.9e-09
WP_010931346.1|647858_648731_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_004566224.1|648730_649732_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003808195.1|649728_650892_+	acyl-CoA dehydrogenase family protein	NA	NA	NA	NA	NA
WP_003808193.1|650917_651601_+	TetR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247312.1|651554_652889_+	AMP-binding protein	NA	NA	NA	NA	NA
WP_010931344.1|652881_653976_+	CoA transferase	NA	NA	NA	NA	NA
WP_005012067.1|654742_655693_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 8
NZ_CP010250	Bordetella pertussis strain H788 chromosome, complete genome	4106823	674604	751913	4106823	protease,tRNA,integrase,transposase	Bacillus_phage(20.0%)	57	721741:721759	741629:741647
WP_023995489.1|674604_675555_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931335.1|675653_677129_-	M81 family metallopeptidase	NA	NA	NA	NA	NA
WP_010931334.1|678716_679604_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931333.1|679606_680548_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931332.1|680593_682159_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931331.1|683936_685262_-	aspartate aminotransferase family protein	NA	NA	NA	NA	NA
WP_010931330.1|685444_686902_+	PLP-dependent aminotransferase family protein	NA	A0A1X9I5H2	Streptococcus_phage	21.1	7.6e-15
WP_003816386.1|686865_687363_-	dihydrofolate reductase	NA	A0A140HLG8	Bacillus_phage	38.9	3.0e-24
WP_010931328.1|687393_688365_-	thymidylate synthase	NA	J7KKN7	Erwinia_phage	33.3	4.8e-50
WP_003808444.1|688417_688855_-	OsmC family protein	NA	NA	NA	NA	NA
WP_010931327.1|688978_689647_+	2-polyprenyl-3-methyl-6-methoxy-1,4-benzoquinone monooxygenase	NA	NA	NA	NA	NA
WP_003808448.1|690375_691479_+	glycosyl transferase	NA	NA	NA	NA	NA
WP_171024626.1|691581_692859_+	Vi polysaccharide biosynthesis UDP-N-acetylglucosamine C-6 dehydrogenase TviB	NA	NA	NA	NA	NA
WP_010930472.1|692870_693896_+	Vi polysaccharide biosynthesis UDP-N-acetylglucosaminuronic acid C-4 epimerase TviC	NA	A0A2K9L4U8	Tupanvirus	44.2	4.7e-72
WP_010931325.1|693897_695268_+	polysaccharide biosynthesis C-terminal domain-containing protein	NA	NA	NA	NA	NA
WP_010931324.1|695268_696405_+	glycosyltransferase family 4 protein	NA	NA	NA	NA	NA
WP_010931323.1|696451_698377_+	asparagine synthase (glutamine-hydrolyzing)	NA	A0A2K9R7N5	Dishui_lake_phycodnavirus	29.0	1.0e-27
WP_010931322.1|698373_699495_+	glycosyltransferase family 4 protein	NA	NA	NA	NA	NA
WP_010931321.1|699491_700646_+	glycosyltransferase	NA	NA	NA	NA	NA
WP_010931320.1|700642_701773_+	glycosyltransferase family 4 protein	NA	NA	NA	NA	NA
WP_003808462.1|701780_703346_-	glucose-6-phosphate isomerase	NA	NA	NA	NA	NA
WP_010931319.1|703352_704735_-	phosphomannomutase/phosphoglucomutase	NA	A0A127AWJ1	Bacillus_phage	31.6	6.2e-51
WP_003808465.1|705013_705625_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931317.1|705716_707132_+	FAD-binding oxidoreductase	NA	NA	NA	NA	NA
WP_003818936.1|707149_707860_+	response regulator transcription factor	NA	NA	NA	NA	NA
WP_010931316.1|707856_709179_+	HAMP domain-containing histidine kinase	NA	NA	NA	NA	NA
WP_010931315.1|709258_711220_+	sulfatase-like hydrolase/transferase	NA	NA	NA	NA	NA
WP_003818932.1|711345_712659_-	fumarylacetoacetase	NA	NA	NA	NA	NA
WP_003818930.1|712767_714066_-	homogentisate 1,2-dioxygenase	NA	NA	NA	NA	NA
WP_010931314.1|714248_715157_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003808487.1|715166_715376_-	DUF2783 domain-containing protein	NA	NA	NA	NA	NA
WP_003808489.1|715387_717067_-	FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010931313.1|717168_718122_-	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
WP_010925978.1|718212_719040_-	bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase	NA	NA	NA	NA	NA
WP_010931312.1|719038_720925_+	tetratricopeptide repeat protein	NA	NA	NA	NA	NA
WP_003818921.1|720921_721521_+	lipoprotein localization protein LolB	NA	NA	NA	NA	NA
WP_010931311.1|721569_722469_+	4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase	NA	NA	NA	NA	NA
721741:721759	attL	CTGCCTGGCGTGGCCGAGT	NA	NA	NA	NA
WP_010931310.1|722677_723628_+	ribose-phosphate pyrophosphokinase	NA	A0A2K9L8D8	Tupanvirus	35.5	7.3e-43
WP_029443719.1|723750_724365_+	50S ribosomal protein L25/general stress protein Ctc	NA	NA	NA	NA	NA
WP_010931308.1|724493_725090_+|tRNA	aminoacyl-tRNA hydrolase	tRNA	NA	NA	NA	NA
WP_010931307.1|725086_725869_+|protease	CPBP family intramembrane metalloprotease	protease	NA	NA	NA	NA
WP_010931306.1|725941_727033_+	redox-regulated ATPase YchF	NA	NA	NA	NA	NA
WP_010931305.1|727312_728440_+|integrase	site-specific integrase	integrase	A0A1B0VMI6	Pseudomonas_phage	33.6	1.4e-48
WP_010931304.1|728781_729828_+	Fic family protein	NA	NA	NA	NA	NA
WP_010931303.1|729975_733095_+	DEAD/DEAH box helicase family protein	NA	NA	NA	NA	NA
WP_010931302.1|733096_736048_+	restriction endonuclease subunit M	NA	G8I4P9	Mycobacterium_phage	25.1	2.9e-21
WP_010931301.1|736063_737275_+	AAA family ATPase	NA	NA	NA	NA	NA
WP_005013747.1|737458_738409_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_077274087.1|738425_738920_+	DUF4276 family protein	NA	NA	NA	NA	NA
WP_019247740.1|738923_739181_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019248455.1|739724_740636_+	UvrD-helicase domain-containing protein	NA	NA	NA	NA	NA
WP_029443992.1|740717_741002_+	ATP-dependent helicase	NA	A0A1V0SIN4	Klosneuvirus	34.1	6.8e-05
WP_005012067.1|741785_742736_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
741629:741647	attR	ACTCGGCCACGCCAGGCAG	NA	NA	NA	NA
WP_019247178.1|743154_745719_-	autotransporter domain-containing protein	NA	NA	NA	NA	NA
WP_019247179.1|745763_747617_-	autotransporter-associated beta strand repeat-containing protein	NA	NA	NA	NA	NA
WP_014905963.1|747949_749521_+	winged helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|750962_751913_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 10
NZ_CP010250	Bordetella pertussis strain H788 chromosome, complete genome	4106823	997847	1100240	4106823	transposase,tRNA	Bacillus_virus(27.27%)	92	NA	NA
WP_003813026.1|997847_998963_+|tRNA	tRNA 2-thiouridine(34) synthase MnmA	tRNA	NA	NA	NA	NA
WP_003813022.1|999063_999882_+	sulfite exporter TauE/SafE family protein	NA	NA	NA	NA	NA
WP_010931185.1|999979_1000591_-	glutathione S-transferase	NA	NA	NA	NA	NA
WP_010931184.1|1000750_1002127_+	adenylosuccinate lyase	NA	A0A2H4UUU6	Bodo_saltans_virus	47.5	2.2e-109
WP_003813017.1|1002189_1002648_+	cytochrome c	NA	NA	NA	NA	NA
WP_003813013.1|1002732_1003428_-	cytochrome b/b6 domain-containing protein	NA	NA	NA	NA	NA
WP_003813010.1|1003489_1003771_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931182.1|1004333_1005086_+	DUF3053 domain-containing protein	NA	NA	NA	NA	NA
WP_003813006.1|1005130_1006207_+	AI-2E family transporter	NA	NA	NA	NA	NA
WP_005012067.1|1006203_1007154_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014486100.1|1007256_1007919_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019249309.1|1008013_1008184_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247599.1|1008536_1009538_+	amidase	NA	NA	NA	NA	NA
WP_003818702.1|1009540_1010737_+	CoA transferase	NA	NA	NA	NA	NA
WP_014486098.1|1010757_1011561_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_019247598.1|1011641_1011938_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247597.1|1011968_1012532_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_014486097.1|1012572_1013430_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_003818698.1|1013437_1014187_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	33.5	6.2e-29
WP_014486096.1|1014208_1015081_+	polysaccharide deacetylase family protein	NA	NA	NA	NA	NA
WP_014486095.1|1015109_1015889_+	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_014486094.1|1015922_1016720_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003808978.1|1019374_1019767_+	hypothetical protein	NA	NA	NA	NA	NA
WP_014486091.1|1019760_1020621_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003818691.1|1020624_1021587_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_014486089.1|1022363_1023053_+	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	28.8	4.8e-12
WP_010930208.1|1023913_1024864_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931181.1|1025213_1026083_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010926062.1|1026153_1026849_+	ankyrin repeat domain-containing protein	NA	NA	NA	NA	NA
WP_010931179.1|1026838_1027348_+	nucleoside deaminase	NA	NA	NA	NA	NA
WP_010931178.1|1027344_1028565_+	MFS transporter	NA	NA	NA	NA	NA
WP_010931177.1|1028512_1029415_-	transcriptional regulator GcvA	NA	NA	NA	NA	NA
WP_023997744.1|1030301_1031588_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931176.1|1031626_1033000_+	amidase	NA	NA	NA	NA	NA
WP_010931175.1|1033038_1033740_-	riboflavin synthase	NA	NA	NA	NA	NA
WP_010931174.1|1034038_1035028_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003809010.1|1035128_1035590_+	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931173.1|1035605_1036154_-	cysteine dioxygenase family protein	NA	NA	NA	NA	NA
WP_010931172.1|1036295_1037771_-	acyl--CoA ligase	NA	Q75ZG1	Hepacivirus	25.6	3.0e-35
WP_010931171.1|1037876_1038968_+	DUF2817 domain-containing protein	NA	NA	NA	NA	NA
WP_010931170.1|1038971_1039754_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931169.1|1039763_1040552_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	40.0	1.1e-33
WP_010931168.1|1041677_1042112_-	PaaI family thioesterase	NA	NA	NA	NA	NA
WP_010931167.1|1042108_1043119_-	zinc-binding dehydrogenase	NA	NA	NA	NA	NA
WP_003809025.1|1043162_1044089_-	VOC family protein	NA	NA	NA	NA	NA
WP_003809026.1|1044375_1044744_+	DUF861 domain-containing protein	NA	NA	NA	NA	NA
WP_023853143.1|1044960_1045911_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931165.1|1045955_1048382_+	copper-translocating P-type ATPase	NA	A0A218MNH6	uncultured_virus	33.8	1.2e-86
WP_010931164.1|1048430_1049123_+	HD domain-containing protein	NA	A0A1D6Y7U0	Golden_Marseillevirus	29.9	4.7e-07
WP_010931163.1|1049195_1050395_+	aspartate/tyrosine/aromatic aminotransferase	NA	NA	NA	NA	NA
WP_003819549.1|1050412_1051318_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931162.1|1051433_1052363_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_010931161.1|1052388_1053735_+	MFS transporter	NA	NA	NA	NA	NA
WP_010931160.1|1053762_1054512_+	SDR family oxidoreductase	NA	A0A0M4JSW6	Mollivirus	26.4	1.2e-11
WP_010931159.1|1054525_1055308_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_005012067.1|1055500_1056451_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931158.1|1056512_1057622_-	porin	NA	NA	NA	NA	NA
WP_003815281.1|1058134_1058971_-	3-methyl-2-oxobutanoate hydroxymethyltransferase	NA	A0A0P0BXC9	Ostreococcus_lucimarinus_virus	33.3	1.6e-33
WP_023997028.1|1059040_1060006_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|1060002_1060953_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247492.1|1061338_1061881_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|1062916_1063867_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247402.1|1064108_1064477_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019248356.1|1064522_1065647_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931156.1|1066781_1067534_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010931155.1|1067625_1068246_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_023852714.1|1068349_1069300_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931154.1|1069296_1071405_-	AsmA family protein	NA	NA	NA	NA	NA
WP_003820814.1|1071549_1072209_-	DNA-3-methyladenine glycosylase I	NA	NA	NA	NA	NA
WP_003820813.1|1072240_1072705_-	redox-sensitive transcriptional activator SoxR	NA	NA	NA	NA	NA
WP_019248355.1|1072980_1073166_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931153.1|1073217_1073970_-	DNA-binding protein	NA	NA	NA	NA	NA
WP_010931152.1|1073976_1075239_-	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_003820806.1|1077596_1078724_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	32.3	1.2e-23
WP_003814524.1|1078734_1079562_-	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
WP_010931150.1|1079548_1080415_-	sugar ABC transporter permease	NA	NA	NA	NA	NA
WP_010931149.1|1081781_1082186_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012808.1|1082277_1083228_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_033446288.1|1083597_1084509_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003820799.1|1084523_1085234_+	FadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931147.1|1085230_1086475_+	aconitase X catalytic domain-containing protein	NA	NA	NA	NA	NA
WP_003820797.1|1086476_1086911_+	DUF126 domain-containing protein	NA	NA	NA	NA	NA
WP_003814535.1|1086939_1087245_+	antibiotic biosynthesis monooxygenase	NA	NA	NA	NA	NA
WP_005012067.1|1087343_1088294_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247277.1|1088350_1089505_-	iron-containing alcohol dehydrogenase	NA	NA	NA	NA	NA
WP_010930176.1|1089579_1090530_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931144.1|1091061_1091859_-	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019247918.1|1091906_1092560_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_003814544.1|1092516_1093605_-	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	36.4	8.7e-32
WP_003814547.1|1093769_1095995_-	glycoside hydrolase family 31 protein	NA	NA	NA	NA	NA
WP_023852715.1|1098272_1099169_+	inositol monophosphatase	NA	NA	NA	NA	NA
WP_005012067.1|1099289_1100240_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 11
NZ_CP010250	Bordetella pertussis strain H788 chromosome, complete genome	4106823	1130625	1201596	4106823	protease,transposase	uncultured_Mediterranean_phage(25.0%)	52	NA	NA
WP_005012808.1|1130625_1131576_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931130.1|1131632_1132745_+	Ldh family oxidoreductase	NA	NA	NA	NA	NA
WP_005012067.1|1135128_1136079_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931129.1|1136669_1137446_+	2-dehydro-3-deoxyglucarate aldolase	NA	NA	NA	NA	NA
WP_003812908.1|1137563_1137827_-	30S ribosomal protein S20	NA	NA	NA	NA	NA
WP_010931128.1|1137927_1138932_-	FecR domain-containing protein	NA	NA	NA	NA	NA
WP_010931127.1|1139132_1140734_-	murein biosynthesis integral membrane protein MurJ	NA	NA	NA	NA	NA
WP_010931126.1|1140759_1141518_-	3-hydroxyacyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_010931125.1|1141609_1142266_-	adenylate kinase	NA	NA	NA	NA	NA
WP_010931124.1|1142356_1143121_-	3-deoxy-manno-octulosonate cytidylyltransferase	NA	NA	NA	NA	NA
WP_003812895.1|1143130_1143319_-	Trm112 family protein	NA	NA	NA	NA	NA
WP_010931123.1|1143374_1144418_-	tetraacyldisaccharide 4'-kinase	NA	NA	NA	NA	NA
WP_010931122.1|1144414_1144828_-	biopolymer transporter ExbD	NA	NA	NA	NA	NA
WP_003812889.1|1144824_1145445_-	MotA/TolQ/ExbB proton channel family protein	NA	NA	NA	NA	NA
WP_005012067.1|1145725_1146676_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931120.1|1146843_1148235_+	exodeoxyribonuclease VII large subunit	NA	A0A1V0SD82	Indivirus	32.0	1.4e-29
WP_010931119.1|1148307_1148886_+	superoxide dismutase [Fe]	NA	NA	NA	NA	NA
WP_019247560.1|1149002_1150400_+	chloride channel protein	NA	NA	NA	NA	NA
WP_010931117.1|1150515_1151721_+	3-oxoadipyl-CoA thiolase	NA	NA	NA	NA	NA
WP_003820399.1|1151820_1152339_-	DUF192 domain-containing protein	NA	A0A1B1IUW8	uncultured_Mediterranean_phage	42.2	5.1e-14
WP_003812875.1|1152433_1152679_-	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	76.6	1.3e-20
WP_003820400.1|1152906_1153221_+|protease	ATP-dependent Clp protease adapter ClpS	protease	A0A1B1IT64	uncultured_Mediterranean_phage	43.8	1.2e-10
WP_010931116.1|1153310_1158500_+	alpha-2-macroglobulin family protein	NA	NA	NA	NA	NA
WP_010931115.1|1158496_1160665_+	penicillin-binding protein 1C	NA	NA	NA	NA	NA
WP_010931114.1|1160720_1163036_+|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	protease	A0A223W0B1	Agrobacterium_phage	41.9	4.1e-164
WP_003820402.1|1163040_1164360_+	PqiA/YebS family transporter subunit	NA	NA	NA	NA	NA
WP_014905522.1|1164378_1166052_+	MCE family protein	NA	NA	NA	NA	NA
WP_010931111.1|1166056_1166725_+	membrane integrity-associated transporter subunit PqiC	NA	NA	NA	NA	NA
WP_010931110.1|1166881_1170703_+	trifunctional transcriptional regulator/proline dehydrogenase/L-glutamate gamma-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
WP_010930800.1|1171033_1171984_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812857.1|1172005_1173151_+	branched-chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003820410.1|1173299_1174229_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003812851.1|1174225_1175314_+	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
WP_010931109.1|1175310_1176114_+	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	23.5	7.9e-14
WP_003812846.1|1176110_1176842_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	31.0	1.4e-12
WP_010931108.1|1176899_1178189_-	MFS transporter	NA	NA	NA	NA	NA
WP_010931107.1|1178285_1178888_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003812839.1|1183441_1183780_-	P-II family nitrogen regulator	NA	NA	NA	NA	NA
WP_010931105.1|1184487_1184754_+	accessory factor UbiK family protein	NA	NA	NA	NA	NA
WP_005012067.1|1186460_1187411_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931103.1|1187407_1188739_-	MFS transporter	NA	NA	NA	NA	NA
WP_010931102.1|1189999_1192000_+	cytochrome o ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
WP_003819722.1|1191992_1192634_+	cytochrome o ubiquinol oxidase subunit III	NA	NA	NA	NA	NA
WP_003809276.1|1192630_1193038_+	cytochrome o ubiquinol oxidase subunit IV	NA	NA	NA	NA	NA
WP_010931101.1|1193034_1193835_+	SURF1 family protein	NA	NA	NA	NA	NA
WP_010931100.1|1193909_1194614_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010931099.1|1194645_1195440_+	N-formylglutamate deformylase	NA	NA	NA	NA	NA
WP_005013747.1|1195436_1196387_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023995489.1|1196485_1197436_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812014.1|1197534_1197969_-	Cd(II)/Pb(II)-responsive transcriptional regulator	NA	NA	NA	NA	NA
WP_010931098.1|1198051_1200388_+	heavy metal translocating P-type ATPase	NA	E4ZFI9	Streptococcus_phage	42.8	3.2e-124
WP_010930525.1|1200579_1201596_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
>prophage 12
NZ_CP010250	Bordetella pertussis strain H788 chromosome, complete genome	4106823	1248990	1329865	4106823	tRNA,transposase	Bacillus_virus(25.0%)	58	NA	NA
WP_010927663.1|1248990_1249941_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931070.1|1249937_1250888_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931069.1|1251148_1252177_-	DctP family TRAP transporter solute-binding subunit	NA	NA	NA	NA	NA
WP_010931068.1|1252256_1253555_-	TRAP transporter large permease	NA	NA	NA	NA	NA
WP_003816847.1|1253551_1254133_-	TRAP transporter small permease	NA	NA	NA	NA	NA
WP_010931067.1|1254445_1258492_+	phosphoribosylformylglycinamidine synthase	NA	A9YX36	Burkholderia_phage	67.4	6.3e-160
WP_062826587.1|1258732_1266394_+	hemagglutinin repeat-containing protein	NA	A0A0R6PJK4	Moraxella_phage	30.9	7.3e-24
WP_005012067.1|1266390_1267341_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931065.1|1268480_1268954_-	MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931064.1|1269093_1269714_-	cupin domain-containing protein	NA	NA	NA	NA	NA
WP_010931063.1|1269849_1270650_+	aldolase	NA	NA	NA	NA	NA
WP_003810897.1|1270704_1271796_+	TRAP transporter substrate-binding protein DctP	NA	NA	NA	NA	NA
WP_010931062.1|1271817_1272261_-	6-carboxytetrahydropterin synthase QueD	NA	NA	NA	NA	NA
WP_010931061.1|1272289_1272922_-	7-carboxy-7-deazaguanine synthase	NA	NA	NA	NA	NA
WP_003810909.1|1273032_1273449_+|tRNA	aminoacyl-tRNA hydrolase	tRNA	NA	NA	NA	NA
WP_010931060.1|1273441_1274134_+	DUF2238 domain-containing protein	NA	NA	NA	NA	NA
WP_010931059.1|1274240_1274615_+	MAPEG family protein	NA	NA	NA	NA	NA
WP_010931058.1|1274691_1275501_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931057.1|1275596_1276541_+	dihydrodipicolinate synthase family protein	NA	NA	NA	NA	NA
WP_003816577.1|1276579_1277551_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003810921.1|1277641_1278079_-	carboxypeptidase regulatory-like domain-containing protein	NA	NA	NA	NA	NA
WP_029443733.1|1278137_1279019_-	NRDE family protein	NA	NA	NA	NA	NA
WP_010931054.1|1280022_1280883_+	amidohydrolase	NA	NA	NA	NA	NA
WP_010931053.1|1280915_1282298_+	FAD-dependent oxidoreductase	NA	A0A2P0ZL82	Lactobacillus_phage	28.4	7.9e-30
WP_010931052.1|1282294_1283314_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019247407.1|1283686_1284181_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010931051.1|1284188_1284929_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931050.1|1285009_1286614_-	glycerol-3-phosphate dehydrogenase/oxidase	NA	NA	NA	NA	NA
WP_010931049.1|1286653_1287442_-	DeoR family transcriptional regulator	NA	A0A077SK06	Escherichia_phage	30.4	2.0e-22
WP_010931048.1|1288644_1289733_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	28.1	9.7e-15
WP_010931047.1|1290613_1291426_+	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
WP_004568502.1|1291438_1291747_+	DUF2160 domain-containing protein	NA	NA	NA	NA	NA
WP_010931046.1|1291864_1293595_+	carbohydrate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019249399.1|1293596_1294742_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931044.1|1294871_1295540_-	DUF502 domain-containing protein	NA	NA	NA	NA	NA
WP_003810957.1|1295661_1296129_-	winged helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_019247521.1|1296264_1297647_+	D-amino acid dehydrogenase	NA	NA	NA	NA	NA
WP_014486086.1|1297643_1298768_+	DNA repair exonuclease	NA	NA	NA	NA	NA
WP_010931042.1|1298764_1301401_+	AAA family ATPase	NA	NA	NA	NA	NA
WP_010931070.1|1301816_1302767_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931041.1|1306513_1307125_-	DUF2239 family protein	NA	NA	NA	NA	NA
WP_003812368.1|1307347_1308808_+	IMP dehydrogenase	NA	A0A1V0SHK8	Klosneuvirus	41.3	1.6e-97
WP_010931040.1|1308904_1310497_+	glutamine-hydrolyzing GMP synthase	NA	A0A1V0SH76	Hokovirus	33.3	1.0e-17
WP_019247974.1|1310850_1311108_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003816876.1|1311109_1312450_+	type II toxin-antitoxin system HipA family toxin	NA	NA	NA	NA	NA
WP_010931038.1|1312545_1313235_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247976.1|1313247_1314678_+	MFS transporter	NA	NA	NA	NA	NA
WP_014905903.1|1316402_1317224_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931036.1|1317234_1318806_+	amidohydrolase	NA	NA	NA	NA	NA
WP_010931035.1|1318834_1319812_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931034.1|1319838_1320642_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	38.2	2.7e-30
WP_010931033.1|1320638_1321433_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_003816890.1|1321440_1322676_+	DUF521 domain-containing protein	NA	NA	NA	NA	NA
WP_010931032.1|1322668_1323103_+	DUF126 domain-containing protein	NA	NA	NA	NA	NA
WP_005013747.1|1323852_1324803_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931031.1|1325424_1327152_-	sulfate permease	NA	NA	NA	NA	NA
WP_010931030.1|1327263_1328622_+	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
WP_005013747.1|1328914_1329865_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 13
NZ_CP010250	Bordetella pertussis strain H788 chromosome, complete genome	4106823	1449260	1513476	4106823	protease,tRNA,transposase	Salmonella_phage(16.67%)	60	NA	NA
WP_005013747.1|1449260_1450211_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814065.1|1450377_1450731_+	cytochrome c	NA	NA	NA	NA	NA
WP_003814063.1|1450743_1451106_+	cytochrome c	NA	NA	NA	NA	NA
WP_003814061.1|1451147_1451573_-	DUF1841 family protein	NA	NA	NA	NA	NA
WP_057110980.1|1451775_1453032_+	NADP-dependent isocitrate dehydrogenase	NA	Q77Z09	Phage_21	64.8	1.2e-11
WP_003814057.1|1453230_1454211_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005015028.1|1454360_1455602_+	O-antigen ligase family protein	NA	NA	NA	NA	NA
WP_005013747.1|1455700_1456651_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814052.1|1456659_1457355_-	two-component system response regulator KdpE	NA	NA	NA	NA	NA
WP_003814050.1|1460176_1460776_-	potassium-transporting ATPase subunit KdpC	NA	NA	NA	NA	NA
WP_010930950.1|1460786_1462952_-	potassium-transporting ATPase subunit KdpB	NA	M1HBF8	Paramecium_bursaria_Chlorella_virus	27.1	1.2e-24
WP_010930949.1|1462975_1464760_-	potassium-transporting ATPase subunit KdpA	NA	NA	NA	NA	NA
WP_017685545.1|1464759_1464849_-	K(+)-transporting ATPase subunit F	NA	NA	NA	NA	NA
WP_003814042.1|1465543_1465816_+	DUF4212 domain-containing protein	NA	NA	NA	NA	NA
WP_003814040.1|1465815_1467882_+	cation acetate symporter	NA	NA	NA	NA	NA
WP_010929577.1|1467878_1468829_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|1468927_1469878_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005015014.1|1469993_1470326_-	multidrug transporter	NA	NA	NA	NA	NA
WP_010929073.1|1470322_1471009_-	Smr/MutS family protein	NA	NA	NA	NA	NA
WP_010930948.1|1470995_1471955_-	thioredoxin-disulfide reductase	NA	A0A2I2L5E1	Orpheovirus	40.2	3.1e-57
WP_003814032.1|1471996_1474357_+	DNA translocase FtsK	NA	S5VNE3	Mycobacterium_phage	48.0	7.6e-81
WP_010930946.1|1474356_1474989_+	outer membrane lipoprotein chaperone LolA	NA	NA	NA	NA	NA
WP_010930945.1|1475090_1476431_+	replication-associated recombination protein A	NA	G3MBE0	Bacillus_virus	38.9	1.6e-75
WP_010930944.1|1476477_1477833_+|tRNA	serine--tRNA ligase	tRNA	A0A1B1IVT2	uncultured_Mediterranean_phage	47.5	1.6e-83
WP_170954289.1|1477958_1478603_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003814024.1|1478547_1478865_-	virulence factor	NA	NA	NA	NA	NA
WP_003814023.1|1479137_1479653_-	hypothetical protein	NA	T1SAR8	Salmonella_phage	44.6	5.1e-06
WP_003814022.1|1479746_1479908_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003814021.1|1479923_1480679_-	GGDEF domain-containing protein	NA	NA	NA	NA	NA
WP_019247690.1|1481017_1481224_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003814020.1|1481231_1481891_-	NAAT family transporter	NA	NA	NA	NA	NA
WP_010930941.1|1482185_1484390_-	TonB-dependent alcaligin siderophore receptor FauA	NA	NA	NA	NA	NA
WP_010930940.1|1484500_1485724_-	alcaligin siderophore export MFS transporter Bcr	NA	S4TR35	Salmonella_phage	29.4	9.8e-24
WP_003814017.1|1485846_1486821_-	alcaligin siderophore biosynthesis transcriptional regulator AlcR	NA	NA	NA	NA	NA
WP_005013753.1|1486888_1488082_-	alcaligin siderophore biosynthesis protein AlcE	NA	NA	NA	NA	NA
WP_003814016.1|1488096_1488897_-	alcaligin siderophore biosynthesis protein AlcD	NA	NA	NA	NA	NA
WP_010930939.1|1488893_1490750_-	alcaligin siderophore biosynthesis protein AlcC	NA	NA	NA	NA	NA
WP_003814014.1|1490746_1491352_-	alcaligin siderophore biosynthesis protein AlcB	NA	NA	NA	NA	NA
WP_003814013.1|1491370_1492756_-	alcaligin siderophore biosynthesis protein AlcA	NA	NA	NA	NA	NA
WP_003814012.1|1493481_1494708_+	cation:proton antiporter	NA	NA	NA	NA	NA
WP_003814011.1|1494796_1495579_+	3-hydroxybutyrate dehydrogenase	NA	NA	NA	NA	NA
WP_010929591.1|1495677_1496628_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814010.1|1496654_1497428_+	peroxide stress protein YaaA	NA	NA	NA	NA	NA
WP_003814009.1|1497439_1498681_+	MFS transporter	NA	NA	NA	NA	NA
WP_010930938.1|1500497_1501325_-	N-acetylmuramoyl-L-alanine amidase	NA	NA	NA	NA	NA
WP_010930937.1|1501326_1502037_-	SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_003821345.1|1502033_1502633_-	septum formation protein Maf	NA	NA	NA	NA	NA
WP_010930936.1|1502741_1503335_+	DUF177 domain-containing protein	NA	NA	NA	NA	NA
WP_003813827.1|1503386_1503569_+	50S ribosomal protein L32	NA	NA	NA	NA	NA
WP_003821347.1|1503625_1504684_+	phosphate acyltransferase PlsX	NA	NA	NA	NA	NA
WP_010930935.1|1504683_1505670_+	ketoacyl-ACP synthase III	NA	NA	NA	NA	NA
WP_010930934.1|1505751_1506687_+	ACP S-malonyltransferase	NA	NA	NA	NA	NA
WP_003813819.1|1506688_1507441_+	3-oxoacyl-ACP reductase FabG	NA	Q06VL0	Trichoplusia_ni_ascovirus	31.3	6.9e-12
WP_003813816.1|1507623_1507863_+	acyl carrier protein	NA	B2ZXV3	Ralstonia_phage	46.6	5.4e-11
WP_003813802.1|1508052_1509282_+	beta-ketoacyl-ACP synthase II	NA	NA	NA	NA	NA
WP_010930933.1|1509283_1509784_+	membrane protein	NA	NA	NA	NA	NA
WP_003813797.1|1509780_1510380_+	RNA polymerase sigma factor RpoE	NA	A0A0F6TH34	Sinorhizobium_phage	26.1	2.2e-05
WP_023853242.1|1510392_1510893_+	sigma-E factor negative regulatory protein	NA	NA	NA	NA	NA
WP_010930931.1|1510892_1511951_+	MucB/RseB C-terminal domain-containing protein	NA	NA	NA	NA	NA
WP_004566381.1|1511988_1513476_+|protease	DegQ family serine endoprotease	protease	W5SAB9	Pithovirus	31.5	1.2e-07
>prophage 14
NZ_CP010250	Bordetella pertussis strain H788 chromosome, complete genome	4106823	1642618	1706196	4106823	protease,transposase	Klebsiella_phage(11.11%)	48	NA	NA
WP_005012808.1|1642618_1643569_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930866.1|1650047_1652795_+	autotransporter Vag8	NA	NA	NA	NA	NA
WP_010930865.1|1652815_1653439_-	septum formation inhibitor Maf	NA	NA	NA	NA	NA
WP_003813199.1|1653450_1653921_-	23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH	NA	NA	NA	NA	NA
WP_003813196.1|1653932_1654319_-	ribosome silencing factor	NA	NA	NA	NA	NA
WP_010930864.1|1654380_1654974_-	nicotinate (nicotinamide) nucleotide adenylyltransferase	NA	NA	NA	NA	NA
WP_010930863.1|1654964_1655876_-	oxygen-dependent coproporphyrinogen oxidase	NA	NA	NA	NA	NA
WP_010930862.1|1655891_1657232_-	phosphoribosylamine--glycine ligase	NA	NA	NA	NA	NA
WP_010930861.1|1657299_1658031_-	YebC/PmpR family DNA-binding transcriptional regulator	NA	NA	NA	NA	NA
WP_010930860.1|1658107_1659706_+	DUF853 domain-containing protein	NA	A0A248XCZ8	Klebsiella_phage	44.9	1.8e-78
WP_023853659.1|1659778_1661122_+	sodium:alanine symporter family protein	NA	NA	NA	NA	NA
WP_076879554.1|1661156_1662482_-	aspartate aminotransferase family protein	NA	A0A1C9EHH3	Mycobacterium_phage	22.5	1.8e-07
WP_010930857.1|1662663_1663596_+	glyoxylate/hydroxypyruvate reductase A	NA	NA	NA	NA	NA
WP_010930856.1|1663606_1665100_-	aldehyde dehydrogenase	NA	NA	NA	NA	NA
WP_010930855.1|1665096_1666020_-	DMT family transporter	NA	NA	NA	NA	NA
WP_010930854.1|1666022_1667285_-	Zn-dependent hydrolase	NA	NA	NA	NA	NA
WP_047122810.1|1667304_1668318_-	histone deacetylase family protein	NA	A0A2K9L4C2	Tupanvirus	35.2	1.7e-42
WP_010930852.1|1668390_1668681_-	cupin domain-containing protein	NA	NA	NA	NA	NA
WP_010930851.1|1668710_1669985_-	4-aminobutyrate--2-oxoglutarate transaminase	NA	A0A1V0SKB7	Klosneuvirus	27.9	1.6e-24
WP_005013747.1|1670127_1671078_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930850.1|1671074_1672712_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.6	3.6e-21
WP_003813165.1|1672716_1673556_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010930849.1|1673552_1674569_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010930848.1|1674676_1676251_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930847.1|1676670_1678215_+	PLP-dependent aminotransferase family protein	NA	A0A1X9I5H2	Streptococcus_phage	25.4	3.1e-14
WP_010930846.1|1678319_1679387_+	tartrate dehydrogenase	NA	NA	NA	NA	NA
WP_010930845.1|1679405_1680992_-	DHA2 family efflux MFS transporter permease subunit	NA	NA	NA	NA	NA
WP_010930844.1|1680988_1682179_-	efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
WP_003813149.1|1683751_1684240_-	MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003813147.1|1684299_1685157_-	DMT family transporter	NA	NA	NA	NA	NA
WP_010930843.1|1685219_1686170_+	DMT family transporter	NA	NA	NA	NA	NA
WP_010930842.1|1686232_1687222_+	quinone oxidoreductase	NA	NA	NA	NA	NA
WP_003813142.1|1687296_1688178_-|protease	protease HtpX	protease	NA	NA	NA	NA
WP_010930841.1|1689235_1690087_+	sulfurtransferase	NA	NA	NA	NA	NA
WP_010930840.1|1690103_1690673_-	phosphohydrolase	NA	NA	NA	NA	NA
WP_010930839.1|1690703_1691567_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930838.1|1691726_1692803_+	putative 2-aminoethylphosphonate ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	35.8	1.2e-28
WP_029443740.1|1692867_1694565_+	putative 2-aminoethylphosphonate ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_003820286.1|1694581_1695412_+	phosphonoacetaldehyde hydrolase	NA	NA	NA	NA	NA
WP_010930836.1|1695440_1696463_+	putative 2-aminoethylphosphonate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929591.1|1696992_1697943_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023852827.1|1697939_1699262_-	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_004568205.1|1699362_1699680_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003809610.1|1699813_1701127_+	pyrimidine permease	NA	Q9KX94	Enterobacteria_phage	67.1	2.1e-149
WP_019247142.1|1701157_1702795_-	Tar ligand binding domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	30.2	8.8e-12
WP_003809615.1|1703418_1703895_+	transcription elongation factor GreA	NA	NA	NA	NA	NA
WP_005013747.1|1704196_1705147_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|1705245_1706196_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 15
NZ_CP010250	Bordetella pertussis strain H788 chromosome, complete genome	4106823	1745309	1793324	4106823	tRNA,transposase	Moraxella_phage(18.18%)	42	NA	NA
WP_010930522.1|1745309_1746260_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930804.1|1746358_1748959_-	TRAP transporter fused permease subunit	NA	NA	NA	NA	NA
WP_003818658.1|1749065_1750070_-	TAXI family TRAP transporter solute-binding subunit	NA	NA	NA	NA	NA
WP_010930803.1|1750178_1751519_-	aspartate aminotransferase family protein	NA	A0A1V0SKB7	Klosneuvirus	22.8	8.8e-18
WP_003818661.1|1751559_1752588_-	MurR/RpiR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930802.1|1752783_1753329_+	winged helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010930801.1|1753325_1753886_+	diaminobutyrate acetyltransferase	NA	NA	NA	NA	NA
WP_010930048.1|1753984_1754935_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930523.1|1754972_1755560_+	YigZ family protein	NA	A0A1X9I5T8	Streptococcus_phage	35.8	4.7e-16
WP_003811007.1|1755577_1755961_-	thioredoxin family protein	NA	V9SJ74	Achromobacter_phage	25.8	8.1e-09
WP_003811011.1|1757320_1758613_-	NCS2 family permease	NA	A0A0R6PHV4	Moraxella_phage	36.0	1.7e-66
WP_010930524.1|1758747_1759788_+|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD	tRNA	A0A0R6PI74	Moraxella_phage	51.3	6.1e-91
WP_010929632.1|1759885_1760902_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003811015.1|1761169_1761817_-	glycerol-3-phosphate 1-O-acyltransferase PlsY	NA	NA	NA	NA	NA
WP_010930526.1|1761942_1762701_+	5'/3'-nucleotidase SurE	NA	A0A1B1ITZ2	uncultured_Mediterranean_phage	51.2	1.4e-68
WP_019247478.1|1762685_1763465_+	protein-L-isoaspartate(D-aspartate) O-methyltransferase	NA	A0A1B1IU40	uncultured_Mediterranean_phage	46.9	4.8e-32
WP_003811022.1|1763482_1764367_+	peptidoglycan DD-metalloendopeptidase family protein	NA	A0A292GJG6	Xanthomonas_phage	49.5	4.6e-15
WP_019248494.1|1764363_1765143_+	3'-5' exonuclease	NA	NA	NA	NA	NA
WP_010930528.1|1765247_1765847_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930529.1|1766135_1766888_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003816525.1|1767006_1768407_+	23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD	NA	A0A2K5B251	Erysipelothrix_phage	26.5	7.3e-31
WP_003816523.1|1768430_1768829_-	Cu(I)-responsive transcriptional regulator	NA	NA	NA	NA	NA
WP_003811035.1|1769004_1769205_+	heavy-metal-associated domain-containing protein	NA	NA	NA	NA	NA
WP_010930530.1|1769343_1770072_+	redoxin family protein	NA	A0A1D8KSL1	Synechococcus_phage	56.8	9.6e-43
WP_003816520.1|1770205_1771621_+	dihydrolipoyl dehydrogenase	NA	NA	NA	NA	NA
WP_003816518.1|1771624_1772488_-	23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ	NA	NA	NA	NA	NA
WP_004568486.1|1772500_1773250_-	glycerophosphodiester phosphodiesterase	NA	A0A2H4PGQ5	Escherichia_phage	27.8	1.5e-14
WP_019247881.1|1773432_1775448_+	SurA N-terminal domain-containing protein	NA	NA	NA	NA	NA
WP_019247882.1|1775429_1776098_-	arylesterase	NA	NA	NA	NA	NA
WP_005012067.1|1776872_1777823_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|1777921_1778872_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003813572.1|1779020_1779359_-	BON domain-containing protein	NA	NA	NA	NA	NA
WP_003813570.1|1779416_1779578_-	DUF1328 domain-containing protein	NA	NA	NA	NA	NA
WP_003813568.1|1779609_1779810_-	CsbD family protein	NA	NA	NA	NA	NA
WP_010930533.1|1780075_1782649_-	cyanophycin synthetase	NA	NA	NA	NA	NA
WP_019247811.1|1782719_1785269_-	cyanophycin synthetase	NA	NA	NA	NA	NA
WP_010930535.1|1787819_1788308_+	DUF1854 domain-containing protein	NA	NA	NA	NA	NA
WP_029443743.1|1788399_1789551_-	N-acetyltransferase	NA	NA	NA	NA	NA
WP_004566336.1|1789604_1790426_+	ferritin-like domain-containing protein	NA	NA	NA	NA	NA
WP_010930537.1|1790464_1791694_+	lytic murein transglycosylase	NA	NA	NA	NA	NA
WP_004566334.1|1791822_1792263_+	DUF937 domain-containing protein	NA	NA	NA	NA	NA
WP_005012808.1|1792373_1793324_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 16
NZ_CP010250	Bordetella pertussis strain H788 chromosome, complete genome	4106823	1854886	1914156	4106823	protease,tRNA,transposase	Klosneuvirus(40.0%)	51	NA	NA
WP_005013747.1|1854886_1855837_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930573.1|1855961_1856771_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010929577.1|1856971_1857922_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930574.1|1859195_1860413_+	four-carbon acid sugar kinase family protein	NA	NA	NA	NA	NA
WP_003818670.1|1861469_1862372_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930576.1|1862448_1863321_+	MOSC N-terminal beta barrel domain-containing protein	NA	NA	NA	NA	NA
WP_003818672.1|1863451_1863820_+	aspartate 1-decarboxylase	NA	NA	NA	NA	NA
WP_010930577.1|1863877_1864924_+	CDP-6-deoxy-delta-3,4-glucoseen reductase	NA	NA	NA	NA	NA
WP_010930578.1|1865119_1866376_+	D-amino acid dehydrogenase	NA	NA	NA	NA	NA
WP_003810623.1|1866380_1867718_+	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_003818676.1|1867867_1868824_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247555.1|1868926_1869859_-	acyclic terpene utilization AtuA family protein	NA	NA	NA	NA	NA
WP_019247554.1|1869974_1870295_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247553.1|1870287_1870647_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930581.1|1870694_1872269_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003810637.1|1872321_1873266_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010930582.1|1873283_1874114_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010930583.1|1874106_1875741_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	32.7	8.2e-18
WP_010930584.1|1875737_1877093_+	amidase	NA	NA	NA	NA	NA
WP_010930585.1|1877999_1879577_+	lipoprotein	NA	NA	NA	NA	NA
WP_010930586.1|1879580_1880855_+	type 4b pilus protein PilO2	NA	NA	NA	NA	NA
WP_010930587.1|1880952_1881327_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930588.1|1883042_1884176_+	general secretion pathway protein	NA	NA	NA	NA	NA
WP_003810661.1|1884213_1884819_+	prepilin-type N-terminal cleavage/methylation domain-containing protein	NA	NA	NA	NA	NA
WP_010930589.1|1884815_1885634_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930590.1|1885705_1888330_+|tRNA	alanine--tRNA ligase	tRNA	A0A1V0SK38	Klosneuvirus	39.4	1.7e-81
WP_004568544.1|1888316_1888571_+	sulfurtransferase TusA family protein	NA	NA	NA	NA	NA
WP_010930591.1|1888637_1889219_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010926757.1|1889522_1889783_+	30S ribosomal protein S16	NA	NA	NA	NA	NA
WP_014905757.1|1889948_1890572_+	ribosome maturation factor RimM	NA	NA	NA	NA	NA
WP_003816734.1|1890571_1891345_+|tRNA	tRNA (guanosine(37)-N1)-methyltransferase TrmD	tRNA	NA	NA	NA	NA
WP_010930593.1|1891341_1892550_-	aminotransferase class V-fold PLP-dependent enzyme	NA	NA	NA	NA	NA
WP_010930594.1|1892575_1893049_-	RidA family protein	NA	NA	NA	NA	NA
WP_010930048.1|1893122_1894073_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_076879566.1|1894171_1895122_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930796.1|1895220_1896570_-	two-component sensor histidine kinase	NA	NA	NA	NA	NA
WP_023852900.1|1897335_1898091_+	MipA/OmpV family protein	NA	NA	NA	NA	NA
WP_010930794.1|1898183_1901066_-|tRNA	valine--tRNA ligase	tRNA	A0A1V0SK04	Klosneuvirus	37.1	3.7e-138
WP_003810689.1|1901388_1901814_+	nucleoside-diphosphate kinase	NA	D2E8E1	Anguillid_herpesvirus	43.2	2.1e-21
WP_004568542.1|1901841_1902990_+	23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN	NA	NA	NA	NA	NA
WP_003810693.1|1902986_1903493_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010930793.1|1903499_1904795_+	flavodoxin-dependent (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase	NA	NA	NA	NA	NA
WP_023995843.1|1904853_1906140_+|tRNA	histidine--tRNA ligase	tRNA	NA	NA	NA	NA
WP_010930791.1|1906141_1906780_+	tetratricopeptide repeat protein	NA	NA	NA	NA	NA
WP_077069010.1|1906782_1907943_+	outer membrane protein assembly factor BamB	NA	NA	NA	NA	NA
WP_003810703.1|1907969_1909325_+	ribosome biogenesis GTPase Der	NA	NA	NA	NA	NA
WP_010930790.1|1909328_1910399_+	histidinol-phosphate transaminase	NA	A0A1X6WGT4	Pacmanvirus	25.7	2.5e-15
WP_003810707.1|1910537_1910774_+	RNA chaperone Hfq	NA	NA	NA	NA	NA
WP_010930789.1|1910861_1911968_+	GTPase HflX	NA	NA	NA	NA	NA
WP_010930788.1|1911933_1913238_+|protease	FtsH protease activity modulator HflK	protease	NA	NA	NA	NA
WP_010930787.1|1913256_1914156_+|protease	protease modulator HflC	protease	NA	NA	NA	NA
>prophage 17
NZ_CP010250	Bordetella pertussis strain H788 chromosome, complete genome	4106823	1924396	1968719	4106823	transposase	Staphylococcus_phage(25.0%)	44	NA	NA
WP_005013747.1|1924396_1925347_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930782.1|1925546_1926632_+	AI-2E family transporter	NA	NA	NA	NA	NA
WP_003810400.1|1926647_1927409_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_170954295.1|1927405_1928365_-	ATP-binding cassette domain-containing protein	NA	A0A2H4PQG7	Staphylococcus_phage	33.6	1.7e-23
WP_010930780.1|1928427_1928928_-	N-acetyltransferase	NA	NA	NA	NA	NA
WP_010930779.1|1928960_1929704_-	sulfite exporter TauE/SafE family protein	NA	NA	NA	NA	NA
WP_010930778.1|1929799_1930039_-	membrane protein	NA	NA	NA	NA	NA
WP_010930777.1|1930052_1930205_-	lipoprotein	NA	NA	NA	NA	NA
WP_010930776.1|1930290_1931781_-	cytochrome c oxidase accessory protein CcoG	NA	NA	NA	NA	NA
WP_010930775.1|1931872_1932811_-	cytochrome-c oxidase, cbb3-type subunit III	NA	NA	NA	NA	NA
WP_003818560.1|1932807_1932984_-	cytochrome oxidase	NA	NA	NA	NA	NA
WP_003810383.1|1932986_1933649_-	cytochrome-c oxidase, cbb3-type subunit II	NA	NA	NA	NA	NA
WP_003810379.1|1935270_1935414_-	cbb3-type cytochrome oxidase assembly protein CcoS	NA	NA	NA	NA	NA
WP_010930774.1|1935410_1936385_-	membrane protein	NA	NA	NA	NA	NA
WP_005012067.1|1936551_1937502_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930773.1|1937498_1938773_-	adenosylmethionine--8-amino-7-oxononanoate transaminase	NA	A0A1V0SKB7	Klosneuvirus	28.9	9.6e-14
WP_010930772.1|1938876_1940070_+	8-amino-7-oxononanoate synthase	NA	NA	NA	NA	NA
WP_010930771.1|1940066_1940720_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_010930770.1|1940716_1942153_+	dethiobiotin synthase	NA	NA	NA	NA	NA
WP_010930769.1|1942140_1942500_+	CidA/LrgA family protein	NA	NA	NA	NA	NA
WP_162272313.1|1943314_1943455_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|1943472_1944423_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|1944521_1945472_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930768.1|1946517_1948383_-	sigma-54-dependent Fis family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930767.1|1948640_1950161_+	aldehyde dehydrogenase	NA	NA	NA	NA	NA
WP_003816959.1|1950248_1950899_-	NAD(P)H-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010930766.1|1951847_1953143_+	DUF445 domain-containing protein	NA	NA	NA	NA	NA
WP_010930765.1|1953164_1954049_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930764.1|1954147_1955023_+	PhzF family phenazine biosynthesis protein	NA	NA	NA	NA	NA
WP_003816964.1|1955012_1955369_-	DUF1428 domain-containing protein	NA	NA	NA	NA	NA
WP_010930763.1|1955499_1956474_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003812228.1|1956603_1956783_-	DUF3008 family protein	NA	NA	NA	NA	NA
WP_029443822.1|1956880_1957405_+	DUF302 domain-containing protein	NA	NA	NA	NA	NA
WP_010930761.1|1957415_1958252_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003816971.1|1958364_1958736_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010930760.1|1958732_1959284_+	SRPBCC family protein	NA	NA	NA	NA	NA
WP_003816975.1|1959299_1960991_-	STAS domain-containing protein	NA	A0A2H4J153	uncultured_Caudovirales_phage	27.3	5.0e-42
WP_003816977.1|1961039_1961720_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_014905663.1|1961967_1962432_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930758.1|1962601_1963531_+	ZIP family metal transporter	NA	NA	NA	NA	NA
WP_019247659.1|1963543_1964191_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023997035.1|1964264_1966082_-	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	27.4	2.3e-37
WP_005012067.1|1966165_1967116_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929577.1|1967768_1968719_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 18
NZ_CP010250	Bordetella pertussis strain H788 chromosome, complete genome	4106823	1981925	2054054	4106823	transposase	Erysipelothrix_phage(20.0%)	60	NA	NA
WP_010930153.1|1981925_1982942_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_019247707.1|1983084_1984437_-	glutathione-disulfide reductase	NA	A0A2K5B2C5	Erysipelothrix_phage	27.6	2.9e-45
WP_003812172.1|1984611_1984908_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|1985006_1985957_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003818523.1|1986408_1987410_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003810306.1|1987582_1988440_+	proline/glycine betaine ABC transporter permease	NA	NA	NA	NA	NA
WP_003810308.1|1988436_1989699_+	glycine betaine/L-proline ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	36.6	6.8e-28
WP_003818524.1|1989799_1990174_+	tautomerase family protein	NA	NA	NA	NA	NA
WP_010930713.1|1990246_1991434_+	acetyl-CoA C-acyltransferase family protein	NA	NA	NA	NA	NA
WP_010930714.1|1991518_1992289_+	spermidine synthase	NA	NA	NA	NA	NA
WP_010930715.1|1992402_1993167_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930716.1|1993117_1994419_+	malonyl-CoA decarboxylase family protein	NA	NA	NA	NA	NA
WP_010930717.1|1994415_1995222_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003818532.1|1996966_1997938_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003818533.1|1998094_1998607_+	superoxide dismutase family protein	NA	Q9MC02	Salmonella_phage	52.3	1.8e-43
WP_010930718.1|1998765_1999740_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930719.1|2000740_2001535_+	ABC transporter ATP-binding protein	NA	A0A1V0SE00	Indivirus	25.7	5.1e-05
WP_003818535.1|2001560_2002367_-	TOBE domain-containing protein	NA	NA	NA	NA	NA
WP_003810329.1|2002477_2003068_+	DUF4136 domain-containing protein	NA	NA	NA	NA	NA
WP_010930720.1|2003078_2004257_+	patatin-like phospholipase family protein	NA	NA	NA	NA	NA
WP_010930721.1|2004359_2004734_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_050825739.1|2004986_2006273_+	efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
WP_019247651.1|2006339_2009570_+	multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_003810344.1|2011060_2011807_+	pyridoxine 5'-phosphate synthase	NA	NA	NA	NA	NA
WP_010930724.1|2011891_2012353_+	holo-ACP synthase	NA	NA	NA	NA	NA
WP_010930725.1|2012390_2013449_+	beta-N-acetylhexosaminidase	NA	NA	NA	NA	NA
WP_010930726.1|2013411_2015241_+	excinuclease ABC subunit UvrC	NA	NA	NA	NA	NA
WP_003810356.1|2015280_2015853_+	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	NA	NA	NA	NA	NA
WP_010930727.1|2017277_2018099_-	NADPH-dependent 7-cyano-7-deazaguanine reductase QueF	NA	A0A2I7SAX1	Vibrio_phage	37.6	4.1e-42
WP_010930728.1|2018417_2019740_+	isocitrate lyase	NA	NA	NA	NA	NA
WP_010930729.1|2020099_2020735_+	membrane protein	NA	NA	NA	NA	NA
WP_010930730.1|2020694_2021645_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930731.1|2022515_2023388_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010930732.1|2023465_2024605_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930733.1|2024963_2026220_+	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA	NA
WP_003816691.1|2026225_2026753_+	aromatic-ring-hydroxylating dioxygenase subunit beta	NA	NA	NA	NA	NA
WP_003816690.1|2026757_2027576_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003816687.1|2027575_2028298_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930735.1|2028319_2028634_+	2Fe-2S iron-sulfur cluster binding domain-containing protein	NA	NA	NA	NA	NA
WP_010930736.1|2028651_2029800_+	CoA transferase	NA	NA	NA	NA	NA
WP_010930737.1|2029830_2030706_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003816680.1|2030702_2032022_-	AMP-binding protein	NA	NA	NA	NA	NA
WP_014486081.1|2032094_2033291_-	acetyl-CoA acetyltransferase	NA	NA	NA	NA	NA
WP_010930739.1|2033301_2034789_-	hydroxymethylglutaryl-CoA synthase family protein	NA	NA	NA	NA	NA
WP_010930740.1|2037383_2038283_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_023852887.1|2038420_2039386_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_005015810.1|2039484_2040435_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|2040656_2041607_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812024.1|2041603_2041906_-	SelT/SelW/SelH family protein	NA	NA	NA	NA	NA
WP_003812026.1|2042065_2042470_+	group III truncated hemoglobin	NA	NA	NA	NA	NA
WP_010930743.1|2042462_2043689_+	NnrS family protein	NA	NA	NA	NA	NA
WP_003812030.1|2043685_2044132_+	membrane protein	NA	NA	NA	NA	NA
WP_003812032.1|2044201_2044984_+	exodeoxyribonuclease III	NA	NA	NA	NA	NA
WP_010930744.1|2045025_2046531_+	M81 family metallopeptidase	NA	NA	NA	NA	NA
WP_019247851.1|2046816_2047650_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930745.1|2049087_2049909_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_010930746.1|2049927_2050782_-	polysaccharide deacetylase	NA	NA	NA	NA	NA
WP_003812044.1|2050785_2051757_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019247855.1|2052441_2052618_+	winged helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_005013747.1|2053103_2054054_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 19
NZ_CP010250	Bordetella pertussis strain H788 chromosome, complete genome	4106823	2248251	2309599	4106823	tRNA,transposase	Yellowstone_lake_phycodnavirus(12.5%)	52	NA	NA
WP_005013747.1|2248251_2249202_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811701.1|2249318_2250038_+	FadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930605.1|2250210_2251197_+	DctP family TRAP transporter solute-binding subunit	NA	NA	NA	NA	NA
WP_010930604.1|2251197_2251680_+	TRAP transporter small permease	NA	NA	NA	NA	NA
WP_003811706.1|2251683_2252967_+	TRAP transporter large permease	NA	NA	NA	NA	NA
WP_003811709.1|2252963_2253902_+	citrate lyase subunit beta	NA	NA	NA	NA	NA
WP_010930603.1|2253898_2255608_+	thiamine pyrophosphate-binding protein	NA	A0A0P0YLY7	Yellowstone_lake_phycodnavirus	27.3	5.9e-35
WP_010930602.1|2255617_2256865_+	Zn-dependent hydrolase	NA	NA	NA	NA	NA
WP_003811716.1|2258475_2259765_-	Glu/Leu/Phe/Val dehydrogenase	NA	NA	NA	NA	NA
WP_020699606.1|2260902_2261661_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	37.9	6.7e-31
WP_010930601.1|2262337_2263081_-	glutamine ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930600.1|2263155_2263896_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930599.1|2264091_2264928_-	ankyrin repeat domain-containing protein	NA	NA	NA	NA	NA
WP_010930598.1|2264978_2265749_-	TatD family hydrolase	NA	NA	NA	NA	NA
WP_010930597.1|2265798_2266851_-	DNA polymerase III subunit delta'	NA	NA	NA	NA	NA
WP_003811733.1|2266847_2267474_-	dTMP kinase	NA	A0A1L2BX49	Bacteriophage	35.1	1.6e-22
WP_010930596.1|2267470_2268505_-	endolytic transglycosylase MltG	NA	NA	NA	NA	NA
WP_010930595.1|2268683_2269700_+	folate-binding protein YgfZ	NA	NA	NA	NA	NA
WP_005012067.1|2269798_2270749_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930797.1|2273489_2274779_-	D-amino acid dehydrogenase	NA	NA	NA	NA	NA
WP_010930798.1|2274897_2275335_-	Rrf2 family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930799.1|2275378_2276587_-	NO-inducible flavohemoprotein	NA	NA	NA	NA	NA
WP_003810867.1|2276733_2277198_+	GatB/YqeY domain-containing protein	NA	A0A0K2FLI9	Brevibacillus_phage	32.4	3.9e-05
WP_014905945.1|2277221_2278172_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930521.1|2279156_2279930_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010930520.1|2279926_2280925_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930519.1|2281009_2281786_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	34.2	1.2e-30
WP_010930518.1|2281941_2283546_-	ABC-F family ATPase	NA	A0A1V0SKJ1	Klosneuvirus	28.9	1.2e-53
WP_003816541.1|2283926_2285051_+	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003810992.1|2285177_2285801_+	TRAP transporter small permease subunit	NA	NA	NA	NA	NA
WP_010930517.1|2285797_2287699_+	TRAP transporter large permease subunit	NA	NA	NA	NA	NA
WP_010930516.1|2287747_2288542_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010930515.1|2288554_2289556_-	muramoyltetrapeptide carboxypeptidase	NA	NA	NA	NA	NA
WP_004568494.1|2289552_2290059_-|tRNA	tRNA adenosine(34) deaminase TadA	tRNA	S4VYT2	Pandoravirus	38.4	3.4e-07
WP_010930513.1|2290051_2290900_-	haloacid dehalogenase-like hydrolase	NA	NA	NA	NA	NA
WP_019247780.1|2290997_2291540_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|2291583_2292534_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930511.1|2292689_2293016_-	cation:proton antiporter	NA	NA	NA	NA	NA
WP_003810975.1|2293012_2293297_-	K+/H+ antiporter subunit F	NA	NA	NA	NA	NA
WP_010930510.1|2293293_2293773_-	Na+/H+ antiporter subunit E	NA	NA	NA	NA	NA
WP_004568496.1|2293769_2295398_-	monovalent cation/H+ antiporter subunit D	NA	NA	NA	NA	NA
WP_003810969.1|2295394_2295739_-	Na+/H+ antiporter subunit C	NA	NA	NA	NA	NA
WP_010930509.1|2295738_2298672_-	monovalent cation/H+ antiporter subunit A	NA	NA	NA	NA	NA
WP_010929588.1|2299830_2300781_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811452.1|2300879_2301176_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930508.1|2301282_2302200_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930507.1|2302204_2302918_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930506.1|2302931_2303903_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019249653.1|2305622_2306003_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010930504.1|2306006_2307194_+	MFS transporter	NA	NA	NA	NA	NA
WP_170954298.1|2307617_2308355_+	arsenical resistance protein ArsH	NA	A0A2H4J5V6	uncultured_Caudovirales_phage	68.2	1.3e-87
WP_005013747.1|2308648_2309599_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 20
NZ_CP010250	Bordetella pertussis strain H788 chromosome, complete genome	4106823	2330390	2401544	4106823	transposase	Tetraselmis_virus(10.0%)	55	NA	NA
WP_005012067.1|2330390_2331341_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023852967.1|2331893_2333519_-	arylsulfatase	NA	A0A2P0VMN7	Tetraselmis_virus	52.2	2.0e-149
WP_010930475.1|2333568_2334603_-	haloacid dehalogenase-like hydrolase	NA	NA	NA	NA	NA
WP_010930476.1|2334605_2335952_-	BatD family protein	NA	NA	NA	NA	NA
WP_010930477.1|2335948_2337463_-	VWA domain-containing protein	NA	NA	NA	NA	NA
WP_010930478.1|2337453_2338464_-	VWA domain-containing protein	NA	NA	NA	NA	NA
WP_010930479.1|2338937_2339879_-	DUF58 domain-containing protein	NA	NA	NA	NA	NA
WP_010930480.1|2339887_2340856_-	AAA family ATPase	NA	NA	NA	NA	NA
WP_010930481.1|2342395_2343364_+	transporter	NA	NA	NA	NA	NA
WP_010930482.1|2343541_2344531_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010926609.1|2344577_2345336_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930483.1|2345525_2346263_+	TerC family protein	NA	A0A0S4KZH7	Pseudomonas_phage	46.6	4.1e-41
WP_005012808.1|2346361_2347312_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003816696.1|2347496_2348279_+	ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	25.8	2.0e-09
WP_003810743.1|2348272_2348974_+	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
WP_003810741.1|2349213_2349816_+	TetR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005013747.1|2351142_2352093_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014486074.1|2352089_2353646_-	LTA synthase family protein	NA	NA	NA	NA	NA
WP_010930486.1|2353638_2354412_-	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_005013747.1|2354470_2355421_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023852812.1|2355502_2356678_-	capsular biosynthesis protein	NA	NA	NA	NA	NA
WP_010930473.1|2356691_2358749_-	capsular polysaccharide biosynthesis protein	NA	NA	NA	NA	NA
WP_010930472.1|2358745_2359771_-	Vi polysaccharide biosynthesis UDP-N-acetylglucosaminuronic acid C-4 epimerase TviC	NA	A0A2K9L4U8	Tupanvirus	44.2	4.7e-72
WP_010930471.1|2359782_2361072_-	Vi polysaccharide biosynthesis UDP-N-acetylglucosamine C-6 dehydrogenase TviB	NA	NA	NA	NA	NA
WP_010930470.1|2361094_2362192_-	capsular polysaccharide export protein	NA	NA	NA	NA	NA
WP_003811224.1|2362188_2363079_-	capsular polysaccharide biosynthesis protein	NA	NA	NA	NA	NA
WP_010930469.1|2363075_2365160_-	glycosyltransferase	NA	NA	NA	NA	NA
WP_010930468.1|2365191_2366361_-	capsule polysaccharide transporter	NA	NA	NA	NA	NA
WP_014486073.1|2366402_2367143_-	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
WP_010930466.1|2367142_2367913_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_019247171.1|2368237_2368405_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930465.1|2368768_2369554_+	glycosyltransferase family 2 protein	NA	A0A1V0SAH6	Catovirus	32.0	1.1e-12
WP_010930464.1|2369580_2371665_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247170.1|2371832_2373788_+	capsular polysaccharide biosynthesis protein	NA	NA	NA	NA	NA
WP_003811209.1|2374111_2374612_-	DNA starvation/stationary phase protection protein	NA	W5S6G8	Pithovirus	35.5	6.4e-14
WP_010930461.1|2374710_2376237_-	CoA-acylating methylmalonate-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
WP_010930460.1|2376374_2377262_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811203.1|2377276_2378230_-	LysR family transcriptional regulator	NA	A0A2P0ZL89	Lactobacillus_phage	26.5	7.2e-14
WP_033446218.1|2378281_2380372_-	ATP-dependent DNA helicase RecG	NA	NA	NA	NA	NA
WP_010930458.1|2380387_2380774_-	reactive intermediate/imine deaminase	NA	NA	NA	NA	NA
WP_010930457.1|2383467_2384271_-	2,5-didehydrogluconate reductase DkgB	NA	A0A2H4PQR8	Staphylococcus_phage	32.4	2.0e-33
WP_010930456.1|2385564_2386467_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811187.1|2386531_2387308_-	ferredoxin--NADP reductase	NA	NA	NA	NA	NA
WP_010930455.1|2387629_2388679_+	Fe(3+) ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930454.1|2388802_2390473_+	iron ABC transporter permease	NA	NA	NA	NA	NA
WP_019248220.1|2390477_2391272_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	29.4	8.3e-16
WP_005012067.1|2391370_2392321_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930453.1|2392340_2393246_-	pirin family protein	NA	NA	NA	NA	NA
WP_003811176.1|2393323_2394022_-	pirin family protein	NA	NA	NA	NA	NA
WP_010930452.1|2394181_2395126_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930451.1|2395135_2396623_-	nitrogen regulation protein NR(I)	NA	NA	NA	NA	NA
WP_003811167.1|2396622_2397690_-	PAS domain-containing protein	NA	Q8QKV7	Ectocarpus_siliculosus_virus	23.5	1.1e-05
WP_003811164.1|2397753_2399166_-	type I glutamate--ammonia ligase	NA	NA	NA	NA	NA
WP_010930450.1|2399351_2400572_-	oxygen-independent coproporphyrinogen III oxidase-like protein	NA	NA	NA	NA	NA
WP_005012808.1|2400593_2401544_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 21
NZ_CP010250	Bordetella pertussis strain H788 chromosome, complete genome	4106823	2486793	2607999	4106823	protease,tRNA,transposase	Planktothrix_phage(20.0%)	115	NA	NA
WP_005012067.1|2486793_2487744_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812577.1|2487842_2488613_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	39.5	8.3e-29
WP_010930397.1|2488609_2489281_-	ectoine/hydroxyectoine ABC transporter permease subunit EhuD	NA	NA	NA	NA	NA
WP_003812581.1|2489277_2489919_-	ectoine/hydroxyectoine ABC transporter permease subunit EhuC	NA	NA	NA	NA	NA
WP_010930396.1|2489931_2490852_-	ectoine/hydroxyectoine ABC transporter substrate-binding protein EhuB	NA	NA	NA	NA	NA
WP_010930395.1|2491012_2492173_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930394.1|2492214_2493165_-	ornithine cyclodeaminase family protein	NA	NA	NA	NA	NA
WP_169507376.1|2493829_2494030_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930392.1|2494152_2495847_-	phosphoenolpyruvate--protein phosphotransferase	NA	NA	NA	NA	NA
WP_003812598.1|2495968_2496238_-	HPr family phosphocarrier protein	NA	NA	NA	NA	NA
WP_003812601.1|2496353_2496752_-	PTS mannose transporter subunit IIA	NA	NA	NA	NA	NA
WP_010930391.1|2496762_2497719_-	glutathione synthase	NA	NA	NA	NA	NA
WP_033446215.1|2497855_2498401_-	translation initiation factor IF-3	NA	A0A2L0UZ54	Agrobacterium_phage	29.9	9.1e-14
WP_003812608.1|2498421_2500371_-|tRNA	threonine--tRNA ligase	tRNA	A0A2K9L297	Tupanvirus	36.0	4.1e-125
WP_019248759.1|2500758_2501535_+	response regulator transcription factor	NA	NA	NA	NA	NA
WP_003812612.1|2501540_2501933_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|2502354_2503305_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930389.1|2503301_2504399_-	sensor domain-containing diguanylate cyclase	NA	A0A127AWB9	Bacillus_phage	37.3	3.5e-20
WP_076879548.1|2504430_2505381_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_062826602.1|2505473_2506427_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930388.1|2506906_2507563_-	phosphoribosylanthranilate isomerase	NA	NA	NA	NA	NA
WP_010930387.1|2507577_2509245_-	TRAP transporter large permease subunit	NA	NA	NA	NA	NA
WP_010930386.1|2509247_2509877_-	TRAP transporter small permease subunit	NA	NA	NA	NA	NA
WP_014486072.1|2510088_2511183_-	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930384.1|2511327_2512140_-|tRNA	tRNA pseudouridine(38-40) synthase TruA	tRNA	NA	NA	NA	NA
WP_023853502.1|2512143_2513847_-	FimV N-terminal domain protein	NA	NA	NA	NA	NA
WP_010930382.1|2513897_2515028_-	aspartate-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
WP_010930381.1|2515214_2516291_-	3-isopropylmalate dehydrogenase	NA	NA	NA	NA	NA
WP_010930380.1|2516372_2517023_-	3-isopropylmalate dehydratase small subunit	NA	NA	NA	NA	NA
WP_010930379.1|2517037_2518441_-	3-isopropylmalate dehydratase large subunit	NA	NA	NA	NA	NA
WP_004567445.1|2518724_2519543_-	substrate-binding domain-containing protein	NA	NA	NA	NA	NA
WP_010930378.1|2519539_2520244_-	phosphate ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.0	2.6e-13
WP_010930377.1|2521143_2522259_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_004567447.1|2522292_2522667_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930376.1|2522689_2523847_-	formate dehydrogenase subunit gamma	NA	NA	NA	NA	NA
WP_003812666.1|2523859_2524093_-	lipoprotein	NA	NA	NA	NA	NA
WP_019247523.1|2524727_2527697_-	formate dehydrogenase subunit alpha	NA	NA	NA	NA	NA
WP_023853518.1|2527711_2527921_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019248667.1|2528072_2528702_-	molecular chaperone TorD family protein	NA	NA	NA	NA	NA
WP_010930373.1|2528698_2530789_-	4Fe-4S binding protein	NA	NA	NA	NA	NA
WP_010930372.1|2530812_2531493_-	DUF3306 domain-containing protein	NA	NA	NA	NA	NA
WP_003820494.1|2531489_2532050_-	DUF3305 domain-containing protein	NA	NA	NA	NA	NA
WP_004567450.1|2532056_2533154_-	iron-sulfur cluster carrier protein ApbC	NA	NA	NA	NA	NA
WP_010930371.1|2533306_2533900_+	molybdenum cofactor guanylyltransferase MobA	NA	NA	NA	NA	NA
WP_010930370.1|2533896_2535189_+	molybdopterin molybdotransferase MoeA	NA	NA	NA	NA	NA
WP_003812685.1|2535202_2535745_+	molybdopterin-guanine dinucleotide biosynthesis protein B	NA	NA	NA	NA	NA
WP_010930369.1|2535754_2536591_-	M48 family metallopeptidase	NA	NA	NA	NA	NA
WP_003820487.1|2536624_2537686_-	chorismate synthase	NA	A0A291AU41	Pandoravirus	42.8	2.9e-80
WP_019247210.1|2537727_2538780_-	EAL domain-containing protein	NA	NA	NA	NA	NA
WP_019247209.1|2538795_2539098_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012808.1|2539239_2540190_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930368.1|2540368_2542063_+	iron ABC transporter permease	NA	NA	NA	NA	NA
WP_003809599.1|2542059_2543145_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	37.7	6.4e-27
WP_010930367.1|2543192_2544092_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003809593.1|2544102_2544747_+	histidine phosphatase family protein	NA	NA	NA	NA	NA
WP_010930366.1|2545768_2549011_-	carbamoyl-phosphate synthase large subunit	NA	NA	NA	NA	NA
WP_023852833.1|2549021_2550176_-	glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit	NA	R4TGJ8	Halovirus	35.4	3.3e-53
WP_010930364.1|2550402_2551365_+	transaldolase	NA	H6WFR1	Cyanophage	29.2	7.5e-11
WP_076879624.1|2551463_2552414_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930363.1|2552512_2553463_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|2553561_2554512_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930362.1|2554521_2555211_-	VIT family protein	NA	NA	NA	NA	NA
WP_003811741.1|2555270_2555708_-	PaaI family thioesterase	NA	NA	NA	NA	NA
WP_003811743.1|2555753_2556647_-	3-hydroxyisobutyrate dehydrogenase	NA	NA	NA	NA	NA
WP_003811746.1|2556694_2557867_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003811748.1|2557863_2559018_-	acyl-CoA dehydrogenase family protein	NA	NA	NA	NA	NA
WP_003811750.1|2559214_2559565_-	RnfH family protein	NA	NA	NA	NA	NA
WP_003811752.1|2559554_2559989_-	type II toxin-antitoxin system RatA family toxin	NA	NA	NA	NA	NA
WP_010930800.1|2560005_2560956_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811754.1|2561103_2561571_+	SsrA-binding protein SmpB	NA	W5RAM5	Staphylococcus_phage	45.1	6.2e-27
WP_010930360.1|2561551_2562709_-	GGDEF domain-containing protein	NA	A0A127AWB9	Bacillus_phage	36.2	2.3e-14
WP_003811759.1|2562774_2563701_-	paraslipin	NA	NA	NA	NA	NA
WP_005012067.1|2563818_2564769_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811761.1|2564803_2565229_-	NfeD family protein	NA	NA	NA	NA	NA
WP_010930359.1|2565352_2566072_+	glutamine amidotransferase	NA	NA	NA	NA	NA
WP_057110967.1|2566139_2568503_-	phosphoenolpyruvate synthase	NA	A0A1V0SGR7	Hokovirus	35.9	2.9e-165
WP_010930357.1|2568664_2569492_+	kinase/pyrophosphorylase	NA	NA	NA	NA	NA
WP_003811768.1|2569503_2570277_-	RNA methyltransferase	NA	NA	NA	NA	NA
WP_003811770.1|2570273_2570879_-	ribonuclease HII	NA	G9E3X7	Emiliania_huxleyi_virus	40.2	8.8e-26
WP_010930356.1|2570865_2572047_-	lipid-A-disaccharide synthase	NA	NA	NA	NA	NA
WP_010930355.1|2572043_2572838_-	acyl-ACP--UDP-N-acetylglucosamine O-acyltransferase	NA	NA	NA	NA	NA
WP_003811776.1|2572838_2573294_-	3-hydroxyacyl-ACP dehydratase FabZ	NA	NA	NA	NA	NA
WP_010930354.1|2573365_2574457_-	UDP-3-O-(3-hydroxymyristoyl)glucosamine N-acyltransferase	NA	NA	NA	NA	NA
WP_003811782.1|2574465_2575029_-	OmpH family outer membrane protein	NA	NA	NA	NA	NA
WP_010930353.1|2575154_2577491_-	outer membrane protein assembly factor BamA	NA	NA	NA	NA	NA
WP_010930352.1|2577543_2578878_-|protease	RIP metalloprotease RseP	protease	NA	NA	NA	NA
WP_003811788.1|2578917_2580117_-	1-deoxy-D-xylulose-5-phosphate reductoisomerase	NA	NA	NA	NA	NA
WP_010930351.1|2580113_2580971_-	phosphatidate cytidylyltransferase	NA	NA	NA	NA	NA
WP_010930350.1|2580990_2581755_-	di-trans,poly-cis-decaprenylcistransferase	NA	R9W0U9	Flavobacterium_phage	36.1	1.7e-18
WP_003811796.1|2581921_2582482_-	ribosome recycling factor	NA	NA	NA	NA	NA
WP_010930349.1|2582496_2583213_-	UMP kinase	NA	NA	NA	NA	NA
WP_010926570.1|2583310_2584189_-	elongation factor Ts	NA	NA	NA	NA	NA
WP_003811803.1|2584372_2585122_-	30S ribosomal protein S2	NA	NA	NA	NA	NA
WP_003811806.1|2585848_2586670_+	type I methionyl aminopeptidase	NA	NA	NA	NA	NA
WP_010930348.1|2586699_2589297_+	[protein-PII] uridylyltransferase	NA	NA	NA	NA	NA
WP_003811812.1|2590100_2590577_+	disulfide bond formation protein B	NA	NA	NA	NA	NA
WP_003811814.1|2590620_2592141_-	amidophosphoribosyltransferase	NA	A0A0M3SGR2	Mollivirus	43.7	4.8e-97
WP_003811815.1|2592182_2592671_-	CvpA family protein	NA	NA	NA	NA	NA
WP_023852965.1|2592667_2593498_-	SPOR domain-containing protein	NA	NA	NA	NA	NA
WP_010930346.1|2593558_2594866_-	bifunctional tetrahydrofolate synthase/dihydrofolate synthase	NA	NA	NA	NA	NA
WP_003817216.1|2595128_2595506_+	flagellar protein FlaG	NA	NA	NA	NA	NA
WP_010930345.1|2595646_2597020_+	flagellar filament capping protein FliD	NA	NA	NA	NA	NA
WP_010930344.1|2597027_2597456_+	flagellar export chaperone FliS	NA	NA	NA	NA	NA
WP_010930343.1|2597503_2597854_+	flagellar protein FliT	NA	NA	NA	NA	NA
WP_023997203.1|2598458_2598872_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247563.1|2598798_2599125_+	flagellar hook-length control protein FliK	NA	NA	NA	NA	NA
WP_010930342.1|2599121_2599448_+	EscU/YscU/HrcU family type III secretion system export apparatus switch protein	NA	NA	NA	NA	NA
WP_010930341.1|2599457_2599853_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930340.1|2599866_2600199_-	flagellar hook-basal body complex protein FliE	NA	NA	NA	NA	NA
WP_010930339.1|2600511_2602188_+	flagellar M-ring protein FliF	NA	NA	NA	NA	NA
WP_003817203.1|2602177_2603188_+	flagellar motor switch protein FliG	NA	NA	NA	NA	NA
WP_010930338.1|2603180_2603936_+	flagellar assembly protein FliH	NA	NA	NA	NA	NA
WP_019247562.1|2603932_2605408_+	flagellar protein export ATPase FliI	NA	NA	NA	NA	NA
WP_003811846.1|2605400_2605847_+	flagellar export protein FliJ	NA	NA	NA	NA	NA
WP_005012067.1|2607048_2607999_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 22
NZ_CP010250	Bordetella pertussis strain H788 chromosome, complete genome	4106823	2668490	2736977	4106823	transposase	Planktothrix_phage(33.33%)	56	NA	NA
WP_010930208.1|2668490_2669441_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930310.1|2670348_2671494_+	DUF3182 family protein	NA	NA	NA	NA	NA
WP_019247449.1|2671480_2672236_+	alpha/beta fold hydrolase	NA	NA	NA	NA	NA
WP_003811361.1|2672352_2672532_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930208.1|2672597_2673548_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930308.1|2676350_2679692_+	maltose alpha-D-glucosyltransferase	NA	NA	NA	NA	NA
WP_010930307.1|2679688_2681884_+	1,4-alpha-glucan branching protein GlgB	NA	NA	NA	NA	NA
WP_010930306.1|2681888_2684009_+	glycogen debranching protein GlgX	NA	NA	NA	NA	NA
WP_010930305.1|2684005_2685760_+	malto-oligosyltrehalose trehalohydrolase	NA	NA	NA	NA	NA
WP_010930304.1|2687126_2689670_+	malto-oligosyltrehalose synthase	NA	NA	NA	NA	NA
WP_010930303.1|2692732_2693587_-	pyridoxine/pyridoxal/pyridoxamine kinase	NA	NA	NA	NA	NA
WP_003811326.1|2693583_2694399_-	YggS family pyridoxal phosphate-dependent enzyme	NA	NA	NA	NA	NA
WP_010930302.1|2694458_2695790_+	transcriptional regulator PtsJ	NA	NA	NA	NA	NA
WP_003811324.1|2695828_2696335_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247534.1|2696574_2696928_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003811322.1|2696999_2697425_+	universal stress protein	NA	NA	NA	NA	NA
WP_019247533.1|2697457_2698345_+	aldo/keto reductase	NA	NA	NA	NA	NA
WP_010930301.1|2698347_2698671_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930300.1|2699907_2700312_+	DoxX family protein	NA	NA	NA	NA	NA
WP_019247530.1|2700493_2700925_+	YXWGXW repeat-containing protein	NA	NA	NA	NA	NA
WP_023852768.1|2701157_2701565_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|2701663_2702614_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811316.1|2702706_2703246_+	peroxiredoxin	NA	NA	NA	NA	NA
WP_023852799.1|2703352_2703697_-	arsenate reductase (glutaredoxin)	NA	A0A2H4J8T1	uncultured_Caudovirales_phage	58.4	3.0e-31
WP_010930298.1|2703754_2705203_-	CoA transferase	NA	NA	NA	NA	NA
WP_003811313.1|2705390_2705726_-	tetratricopeptide repeat protein	NA	NA	NA	NA	NA
WP_010930297.1|2707353_2708532_+	DUF1501 domain-containing protein	NA	NA	NA	NA	NA
WP_003811310.1|2708614_2709115_+	glutathione peroxidase	NA	Q6VZR0	Canarypox_virus	38.4	4.7e-25
WP_010930296.1|2709224_2709926_+	glutathione S-transferase N-terminal domain-containing protein	NA	NA	NA	NA	NA
WP_010930295.1|2709937_2710402_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_010930294.1|2711493_2712321_+	DUF3298 domain-containing protein	NA	NA	NA	NA	NA
WP_010930293.1|2712446_2712917_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003811301.1|2713043_2713937_+	phosphatidylserine decarboxylase	NA	NA	NA	NA	NA
WP_010930292.1|2713984_2715166_+	alpha-hydroxy-acid oxidizing protein	NA	NA	NA	NA	NA
WP_003811298.1|2715178_2715994_-	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930291.1|2716127_2716655_-	RES family NAD+ phosphorylase	NA	NA	NA	NA	NA
WP_003811295.1|2716651_2717149_-	DUF2384 domain-containing protein	NA	NA	NA	NA	NA
WP_003811293.1|2717296_2717674_+	DUF423 domain-containing protein	NA	NA	NA	NA	NA
WP_010929584.1|2717895_2718846_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811244.1|2718944_2719556_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_010930290.1|2719790_2720918_+	branched-chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930289.1|2721028_2722117_-	sn-glycerol-3-phosphate import ATP-binding protein UgpC	NA	G9BWD6	Planktothrix_phage	31.2	2.2e-19
WP_003811259.1|2722169_2723021_-	sn-glycerol-3-phosphate ABC transporter permease UgpE	NA	NA	NA	NA	NA
WP_003811262.1|2723040_2723922_-	sn-glycerol-3-phosphate ABC transporter permease UgpA	NA	NA	NA	NA	NA
WP_010930288.1|2724098_2725412_-	sn-glycerol-3-phosphate ABC transporter substrate-binding protein UgpB	NA	NA	NA	NA	NA
WP_003811267.1|2725622_2726456_+	pyrroline-5-carboxylate reductase	NA	NA	NA	NA	NA
WP_010930287.1|2726452_2727034_+	queuosine precursor transporter	NA	A0A2I7SAW6	Vibrio_phage	37.3	9.4e-17
WP_005015810.1|2727387_2728338_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930286.1|2728353_2729469_+	branched-chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003811272.1|2729571_2730498_+	high-affinity branched-chain amino acid ABC transporter permease LivH	NA	NA	NA	NA	NA
WP_010930285.1|2730497_2731736_+	high-affinity branched-chain amino acid ABC transporter permease LivM	NA	NA	NA	NA	NA
WP_003811277.1|2731732_2732500_+	high-affinity branched-chain amino acid ABC transporter ATP-binding protein LivG	NA	A0A2H4PQG7	Staphylococcus_phage	26.4	1.2e-14
WP_010930284.1|2732500_2733202_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.4	1.3e-17
WP_019247793.1|2733283_2733730_-	aspartate/glutamate racemase family protein	NA	NA	NA	NA	NA
WP_010930283.1|2734619_2735258_+	glutathione S-transferase	NA	NA	NA	NA	NA
WP_005012808.1|2736026_2736977_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 23
NZ_CP010250	Bordetella pertussis strain H788 chromosome, complete genome	4106823	2877660	2958938	4106823	tRNA,transposase	Planktothrix_phage(16.67%)	58	NA	NA
WP_005012067.1|2877660_2878611_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003813621.1|2878607_2879510_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930206.1|2879597_2880356_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_023853245.1|2880368_2881460_-	cell division protein ZapE	NA	NA	NA	NA	NA
WP_003813626.1|2881557_2882985_-	dihydrolipoyl dehydrogenase	NA	A0A2K5B2C5	Erysipelothrix_phage	28.1	2.1e-41
WP_010930204.1|2883214_2884429_-	2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase	NA	NA	NA	NA	NA
WP_003813631.1|2884474_2887345_-	2-oxoglutarate dehydrogenase E1 component	NA	NA	NA	NA	NA
WP_010930202.1|2889755_2890244_-	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930201.1|2890369_2893066_+	alpha-ketoglutarate dehydrogenase	NA	NA	NA	NA	NA
WP_010930200.1|2893220_2895503_+	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
WP_019248935.1|2895677_2896301_+	serotype 2 fimbrial subunit	NA	NA	NA	NA	NA
WP_010930198.1|2896399_2897350_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812405.1|2897396_2897951_-	transcription elongation factor GreB	NA	NA	NA	NA	NA
WP_003816844.1|2898018_2898864_-	PHP domain-containing protein	NA	NA	NA	NA	NA
WP_019248398.1|2898933_2899902_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_010930196.1|2903597_2907524_-	inverse autotransporter beta-barrel domain-containing protein	NA	NA	NA	NA	NA
WP_010930194.1|2908259_2911490_-	autotransporter SphB3	NA	NA	NA	NA	NA
WP_010928340.1|2911771_2912599_-	TatD family hydrolase	NA	NA	NA	NA	NA
WP_003812422.1|2912632_2913328_-	lipoprotein-releasing ABC transporter ATP-binding protein LolD	NA	G9BWD6	Planktothrix_phage	38.6	7.0e-35
WP_019247537.1|2913320_2914601_-	lipoprotein-releasing ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_010930192.1|2914610_2915588_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930191.1|2915569_2917270_+	single-stranded-DNA-specific exonuclease RecJ	NA	A7KV88	Bacillus_phage	28.3	1.3e-50
WP_010926448.1|2917372_2918476_+	peptide chain release factor 2	NA	NA	NA	NA	NA
WP_010926447.1|2918506_2919262_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930190.1|2919268_2920789_+|tRNA	lysine--tRNA ligase	tRNA	A0A1V0SAC0	Catovirus	36.0	1.2e-82
WP_010930189.1|2920831_2921134_+	membrane protein	NA	NA	NA	NA	NA
WP_003812436.1|2921130_2921763_-	TetR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930188.1|2921841_2923707_-	long-chain fatty acid--CoA ligase	NA	A0A1V0SBX8	Catovirus	23.3	9.3e-50
WP_020699602.1|2923703_2924498_-	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	23.3	1.2e-11
WP_010930186.1|2924526_2925642_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930185.1|2926546_2927425_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010930184.1|2927424_2928249_-	ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	22.7	1.0e-08
WP_010929591.1|2928416_2929367_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930183.1|2929579_2932429_+	EAL domain-containing protein	NA	NA	NA	NA	NA
WP_010930182.1|2932410_2933139_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_019248549.1|2933279_2934743_-	YdiU family protein	NA	A0A075BSJ0	Microcystis_phage	32.5	1.7e-43
WP_010930180.1|2934739_2935111_-	DUF2069 domain-containing protein	NA	NA	NA	NA	NA
WP_003812701.1|2935128_2936442_+	YihY family inner membrane protein	NA	NA	NA	NA	NA
WP_003812703.1|2936478_2936937_+	CBS domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|2937049_2938000_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930178.1|2937996_2939010_-|tRNA	tRNA dihydrouridine(20/20a) synthase DusA	tRNA	NA	NA	NA	NA
WP_003812707.1|2939149_2940136_+	homoserine kinase	NA	NA	NA	NA	NA
WP_161633091.1|2940494_2941202_-	DUF192 domain-containing protein	NA	NA	NA	NA	NA
WP_010929591.1|2941782_2942733_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003809618.1|2942884_2943487_-	YhbY family RNA-binding protein	NA	NA	NA	NA	NA
WP_010930175.1|2943505_2944138_+	RlmE family RNA methyltransferase	NA	NA	NA	NA	NA
WP_162096758.1|2944182_2944434_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930174.1|2944375_2946262_+	ATP-dependent metallopeptidase FtsH/Yme1/Tma family protein	NA	M4QMW8	Micromonas_pusilla_virus	41.5	1.4e-109
WP_010930173.1|2946280_2947123_+	dihydropteroate synthase	NA	A0A0B5J4J5	Pandoravirus	32.5	3.2e-26
WP_003819875.1|2947119_2948478_+	phosphoglucosamine mutase	NA	NA	NA	NA	NA
WP_003809629.1|2948698_2949493_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_010930172.1|2949723_2951217_-	exopolyphosphatase	NA	NA	NA	NA	NA
WP_010930171.1|2951452_2953534_+	polyphosphate kinase 1	NA	NA	NA	NA	NA
WP_014486066.1|2953728_2954769_+	phosphate ABC transporter substrate-binding protein PstS	NA	M4QHS4	Cyanophage	40.2	2.1e-51
WP_010930169.1|2954903_2955920_+	phosphate ABC transporter permease subunit PstC	NA	NA	NA	NA	NA
WP_003809638.1|2955941_2956799_+	phosphate ABC transporter permease PstA	NA	NA	NA	NA	NA
WP_010930167.1|2956843_2957620_+	phosphate ABC transporter ATP-binding protein PstB	NA	G9BWD6	Planktothrix_phage	28.7	4.3e-17
WP_005013747.1|2957987_2958938_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 24
NZ_CP010250	Bordetella pertussis strain H788 chromosome, complete genome	4106823	2968006	3016944	4106823	tRNA,holin,transposase	uncultured_Mediterranean_phage(37.5%)	46	NA	NA
WP_003819794.1|2968006_2968420_-|holin	phage holin family protein	holin	NA	NA	NA	NA
WP_003809432.1|2968460_2968778_-	DUF883 domain-containing protein	NA	NA	NA	NA	NA
WP_003809431.1|2968862_2969579_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930160.1|2969842_2971264_+	uroporphyrinogen-III C-methyltransferase	NA	NA	NA	NA	NA
WP_019248433.1|2971330_2974078_-	pertactin autotransporter	NA	NA	NA	NA	NA
WP_010931363.1|2974410_2975427_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010930157.1|2975762_2976404_-	uracil phosphoribosyltransferase	NA	NA	NA	NA	NA
WP_003809423.1|2976494_2977931_-	D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase	NA	NA	NA	NA	NA
WP_023853534.1|2978088_2979162_+|tRNA	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	tRNA	NA	NA	NA	NA
WP_010930155.1|2979158_2980295_+|tRNA	tRNA guanosine(34) transglycosylase Tgt	tRNA	A0A1B1IVQ4	uncultured_Mediterranean_phage	44.4	1.9e-85
WP_003809416.1|2980439_2980784_+	preprotein translocase subunit YajC	NA	A0A1B1IVR5	uncultured_Mediterranean_phage	40.4	1.0e-10
WP_010930154.1|2980850_2982731_+	protein translocase subunit SecD	NA	NA	NA	NA	NA
WP_003809411.1|2982780_2983716_+	protein translocase subunit SecF	NA	A0A1B1IVP7	uncultured_Mediterranean_phage	35.5	3.0e-41
WP_010931363.1|2984048_2985065_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_015041211.1|2986002_2987430_+|tRNA	tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB	tRNA	NA	NA	NA	NA
WP_010930151.1|2987426_2988449_+	PhoH family protein	NA	A0A0S0MVD6	Pseudomonas_phage	45.4	8.7e-50
WP_003809396.1|2988438_2988912_+	rRNA maturation RNase YbeY	NA	NA	NA	NA	NA
WP_010930149.1|2989052_2989940_+	CBS domain-containing protein	NA	NA	NA	NA	NA
WP_014486064.1|2989936_2991580_+	apolipoprotein N-acyltransferase	NA	NA	NA	NA	NA
WP_010930148.1|2991576_2992626_-	aldo/keto reductase	NA	NA	NA	NA	NA
WP_023853536.1|2993414_2994431_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003817162.1|2994530_2995163_-	protein phosphatase CheZ	NA	NA	NA	NA	NA
WP_003811911.1|2995171_2995561_-	chemotaxis protein CheY	NA	Q56AR1	Bacillus_thuringiensis_phage	33.3	5.7e-10
WP_010930146.1|2995613_2996666_-	chemotaxis response regulator protein-glutamate methylesterase	NA	NA	NA	NA	NA
WP_010930145.1|2997529_2999236_-	Tar ligand binding domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	41.7	1.4e-12
WP_003811919.1|2999309_2999810_-	chemotaxis protein CheW	NA	NA	NA	NA	NA
WP_010930144.1|2999824_3001882_-	chemotaxis protein CheA	NA	NA	NA	NA	NA
WP_019247393.1|3001908_3002202_-	response regulator	NA	NA	NA	NA	NA
WP_003817154.1|3002303_3003251_-	flagellar motor protein MotB	NA	NA	NA	NA	NA
WP_003811927.1|3003263_3004139_-	flagellar motor stator protein MotA	NA	NA	NA	NA	NA
WP_003811929.1|3004259_3004820_-	flagellar transcriptional regulator FlhC	NA	NA	NA	NA	NA
WP_010930143.1|3004854_3005178_-	flagellar transcriptional regulator FlhD	NA	NA	NA	NA	NA
WP_003811933.1|3005613_3006351_+	RNA polymerase sigma factor FliA	NA	NA	NA	NA	NA
WP_005012067.1|3006649_3007600_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003809486.1|3007843_3008107_+	translation initiation factor IF-1	NA	NA	NA	NA	NA
WP_003819817.1|3008180_3008462_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930142.1|3008478_3009339_-	M23 family metallopeptidase	NA	A0A292GJG6	Xanthomonas_phage	36.1	2.6e-15
WP_003809479.1|3009335_3009671_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930141.1|3009724_3010375_-	molybdopterin adenylyltransferase	NA	NA	NA	NA	NA
WP_019247197.1|3012055_3013000_-	AzlC family ABC transporter permease	NA	NA	NA	NA	NA
WP_003809467.1|3013045_3013363_-	MerR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930139.1|3013365_3014304_-	DnaJ domain-containing protein	NA	A0A0P0YMJ9	Yellowstone_lake_phycodnavirus	24.1	5.6e-11
WP_003819814.1|3014481_3014967_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_010930138.1|3014985_3015534_+	DinB family protein	NA	NA	NA	NA	NA
WP_023994624.1|3015565_3015718_+	hypothetical protein	NA	NA	NA	NA	NA
WP_077069012.1|3015810_3016944_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 25
NZ_CP010250	Bordetella pertussis strain H788 chromosome, complete genome	4106823	3028551	3101045	4106823	transposase	Bacillus_virus(16.67%)	58	NA	NA
WP_010929584.1|3028551_3029502_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003817151.1|3029544_3030720_+	FliC/FljB family flagellin	NA	NA	NA	NA	NA
WP_010930129.1|3030941_3032732_-	dihydrolipoyl dehydrogenase	NA	A0A2K5B2C5	Erysipelothrix_phage	25.2	2.4e-39
WP_010930128.1|3032744_3034406_-	dihydrolipoyllysine-residue acetyltransferase	NA	NA	NA	NA	NA
WP_010930127.1|3034418_3037124_-	pyruvate dehydrogenase (acetyl-transferring), homodimeric type	NA	NA	NA	NA	NA
WP_003817147.1|3037416_3039171_+	PAS domain S-box protein	NA	NA	NA	NA	NA
WP_010930126.1|3039167_3039794_+	response regulator transcription factor	NA	NA	NA	NA	NA
WP_003811948.1|3039790_3040642_+	bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD	NA	A0A249XZQ2	Enterococcus_phage	39.8	2.1e-33
WP_019248379.1|3040717_3042832_+	M3 family metallopeptidase	NA	NA	NA	NA	NA
WP_010930124.1|3043018_3043633_+	SCO family protein	NA	NA	NA	NA	NA
WP_010930123.1|3043778_3044030_+	GlsB/YeaQ/YmgE family stress response membrane protein	NA	NA	NA	NA	NA
WP_062826604.1|3044099_3045482_-	efflux transporter outer membrane subunit	NA	NA	NA	NA	NA
WP_010930121.1|3045478_3048658_-	efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_029443805.1|3049465_3050383_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930119.1|3050434_3051166_-	rRNA pseudouridine synthase	NA	NA	NA	NA	NA
WP_010926548.1|3051225_3051798_+	chorismate lyase	NA	NA	NA	NA	NA
WP_010929632.1|3053306_3054323_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010930118.1|3054460_3055510_-	NADP(H)-dependent aldo-keto reductase	NA	NA	NA	NA	NA
WP_005012067.1|3055614_3056565_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003813314.1|3056660_3057386_-	CoA pyrophosphatase	NA	NA	NA	NA	NA
WP_003813315.1|3057596_3057977_-	50S ribosomal protein L19	NA	NA	NA	NA	NA
WP_014905652.1|3058282_3059155_+	EamA family transporter	NA	NA	NA	NA	NA
WP_023852686.1|3059162_3059543_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023852693.1|3059696_3060971_-	PA0069 family radical SAM protein	NA	NA	NA	NA	NA
WP_010930113.1|3062458_3063367_-	sulfate adenylyltransferase subunit CysD	NA	NA	NA	NA	NA
WP_010930112.1|3064164_3065229_-	sulfate ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	30.3	3.8e-24
WP_170954292.1|3067065_3068067_-	sulfate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003813333.1|3068289_3068931_-	peroxiredoxin	NA	NA	NA	NA	NA
WP_003821527.1|3069013_3070840_-	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_010930111.1|3071083_3072013_-	electron transfer flavoprotein subunit alpha	NA	NA	NA	NA	NA
WP_010930110.1|3072012_3072762_-	electron transfer flavoprotein subunit beta/FixA family protein	NA	NA	NA	NA	NA
WP_003821521.1|3072833_3073748_-	histone deacetylase family protein	NA	A0A2K9KZC4	Tupanvirus	34.7	9.8e-45
WP_010930108.1|3073767_3074913_+	lytic murein transglycosylase B	NA	NA	NA	NA	NA
WP_014486062.1|3074973_3075885_-	cysteine synthase CysM	NA	A0A1X9I5K7	Streptococcus_phage	38.8	8.0e-47
WP_005012067.1|3075965_3076916_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_033446303.1|3077014_3077599_-	helix-hairpin-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003821513.1|3077633_3078623_-	ADP-glyceromanno-heptose 6-epimerase	NA	E3SJ87	Synechococcus_phage	34.4	2.2e-26
WP_010930105.1|3078619_3079561_-	D-glycero-beta-D-manno-heptose-7-phosphate kinase	NA	A0A2H4N7X4	Lake_Baikal_phage	28.1	1.5e-16
WP_010930104.1|3079557_3080778_-	lipopolysaccharide assembly protein LapB	NA	NA	NA	NA	NA
WP_010930103.1|3080820_3081135_-	DUF1049 domain-containing protein	NA	NA	NA	NA	NA
WP_010930102.1|3081326_3081686_-	integration host factor subunit beta	NA	NA	NA	NA	NA
WP_010930101.1|3081687_3083403_-	30S ribosomal protein S1	NA	NA	NA	NA	NA
WP_010930100.1|3083590_3084262_-	(d)CMP kinase	NA	NA	NA	NA	NA
WP_010930099.1|3084276_3085605_-	3-phosphoshikimate 1-carboxyvinyltransferase	NA	NA	NA	NA	NA
WP_010930098.1|3085601_3086501_-	prephenate dehydrogenase/arogenate dehydrogenase family protein	NA	NA	NA	NA	NA
WP_010930097.1|3086587_3087673_-	prephenate dehydratase	NA	NA	NA	NA	NA
WP_010930096.1|3087665_3088799_-	3-phosphoserine/phosphohydroxythreonine transaminase	NA	M1Q1P2	Streptococcus_phage	44.0	6.4e-78
WP_010930095.1|3088798_3091480_-	DNA gyrase subunit A	NA	G3M9Z5	Bacillus_virus	33.5	3.2e-104
WP_010930094.1|3091850_3092432_+	OmpA family protein	NA	NA	NA	NA	NA
WP_010930093.1|3092557_3093283_+	bifunctional 3-demethylubiquinone 3-O-methyltransferase/2-octaprenyl-6-hydroxy phenol methylase	NA	NA	NA	NA	NA
WP_010930092.1|3093279_3093957_+	HAD-IA family hydrolase	NA	NA	NA	NA	NA
WP_010930091.1|3094172_3095354_+	MFS transporter	NA	NA	NA	NA	NA
WP_010930090.1|3096126_3096309_+	type II toxin-antitoxin system HicA family toxin	NA	A0A1L2JY37	Aeribacillus_phage	56.1	3.7e-12
WP_005012808.1|3096338_3097289_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_004566317.1|3097418_3097811_+	type II toxin-antitoxin system HicB family antitoxin	NA	A0A0R6PJ17	Moraxella_phage	45.0	4.8e-25
WP_003821497.1|3098087_3098999_-	LysR family transcriptional regulator	NA	Q6JIH3	Burkholderia_virus	27.6	4.4e-05
WP_010930088.1|3099123_3100098_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_005012067.1|3100094_3101045_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 26
NZ_CP010250	Bordetella pertussis strain H788 chromosome, complete genome	4106823	3114552	3168070	4106823	holin,transposase	Bacillus_phage(33.33%)	44	NA	NA
WP_010930066.1|3114552_3115503_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003810839.1|3115615_3115867_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003810835.1|3116372_3117491_-	mannose-6-phosphate isomerase	NA	NA	NA	NA	NA
WP_003810832.1|3117610_3117823_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930064.1|3117982_3118204_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929591.1|3118256_3119207_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930062.1|3120383_3121754_-	acetyl-CoA carboxylase biotin carboxylase subunit	NA	NA	NA	NA	NA
WP_010930061.1|3121786_3122578_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930060.1|3122590_3123646_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_019247557.1|3123671_3124547_-	amidohydrolase	NA	NA	NA	NA	NA
WP_023852826.1|3124652_3124901_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003819989.1|3124935_3126390_-	carboxylase	NA	NA	NA	NA	NA
WP_004568140.1|3126386_3126908_-	acetyl-CoA carboxylase biotin carboxyl carrier protein	NA	NA	NA	NA	NA
WP_010930057.1|3126936_3128289_-	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_029444137.1|3128512_3131401_-	HD domain-containing protein	NA	NA	NA	NA	NA
WP_010930056.1|3133545_3134847_+	phospholipase A	NA	NA	NA	NA	NA
WP_010930055.1|3134861_3135578_-	flagellar brake protein	NA	NA	NA	NA	NA
WP_010930054.1|3135859_3136540_+	DUF3313 domain-containing protein	NA	NA	NA	NA	NA
WP_003809770.1|3136551_3136719_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023852837.1|3136827_3136974_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930052.1|3137067_3137727_-	thiopurine S-methyltransferase	NA	NA	NA	NA	NA
WP_010930051.1|3138125_3139958_+	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	26.4	1.3e-27
WP_005012067.1|3139954_3140905_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814007.1|3142068_3143784_+	acetolactate synthase 3 catalytic subunit	NA	A0A0P0CDR3	Ostreococcus_lucimarinus_virus	30.3	3.1e-60
WP_003814006.1|3143794_3144286_+	acetolactate synthase small subunit	NA	NA	NA	NA	NA
WP_010930015.1|3144358_3145375_+	ketol-acid reductoisomerase	NA	NA	NA	NA	NA
WP_003814004.1|3145542_3146322_+	CDP-diacylglycerol--serine O-phosphatidyltransferase	NA	NA	NA	NA	NA
WP_003814003.1|3146340_3146868_-	lipoprotein	NA	NA	NA	NA	NA
WP_003814002.1|3147161_3147431_+	30S ribosomal protein S15	NA	NA	NA	NA	NA
WP_003821234.1|3147521_3149681_+	polyribonucleotide nucleotidyltransferase	NA	NA	NA	NA	NA
WP_003814000.1|3149801_3150521_+	lipoprotein	NA	NA	NA	NA	NA
WP_005013747.1|3150517_3151468_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003813999.1|3151608_3152826_+	threonine ammonia-lyase	NA	NA	NA	NA	NA
WP_010930016.1|3152819_3153431_-	PIN domain-containing protein	NA	K4HZX4	Acidithiobacillus_phage	32.5	3.3e-12
WP_003813997.1|3154064_3155042_+	NAD(P)H-quinone oxidoreductase	NA	NA	NA	NA	NA
WP_003813996.1|3155185_3155932_+	triose-phosphate isomerase	NA	NA	NA	NA	NA
WP_010930017.1|3155953_3156400_+	preprotein translocase subunit SecG	NA	NA	NA	NA	NA
WP_010930018.1|3157187_3159419_+|holin	choline BCCT transporter BetT	holin	NA	NA	NA	NA
WP_003813993.1|3159441_3160242_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003813992.1|3160523_3161756_+	methylaspartate ammonia-lyase	NA	NA	NA	NA	NA
WP_003813991.1|3161866_3162856_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930019.1|3162886_3164275_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_003813988.1|3165873_3166857_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_023994644.1|3167053_3168070_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
>prophage 27
NZ_CP010250	Bordetella pertussis strain H788 chromosome, complete genome	4106823	3232528	3302580	4106823	transposase	Klosneuvirus(16.67%)	55	NA	NA
WP_041337087.1|3232528_3233479_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003813068.1|3233475_3234495_-	class 1 fructose-bisphosphatase	NA	A0A1V0SKX4	Klosneuvirus	35.7	1.5e-49
WP_010930049.1|3234504_3237213_-	aminopeptidase N	NA	A0A0P0IY26	Acinetobacter_phage	24.0	2.8e-15
WP_010930050.1|3237360_3238017_+	DUF4136 domain-containing protein	NA	NA	NA	NA	NA
WP_005013747.1|3238115_3239066_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023998705.1|3239213_3240107_+	mechanosensitive ion channel family protein	NA	NA	NA	NA	NA
WP_010930013.1|3240306_3242001_+	thiamine pyrophosphate-binding protein	NA	NA	NA	NA	NA
WP_010930012.1|3242035_3242962_+	VOC family protein	NA	NA	NA	NA	NA
WP_010930011.1|3243030_3244128_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003818996.1|3244146_3245010_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	38.9	9.6e-34
WP_010930010.1|3245021_3245804_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_004566042.1|3245800_3246919_+	DUF2817 domain-containing protein	NA	NA	NA	NA	NA
WP_010930009.1|3246915_3248448_+	acyl--CoA ligase	NA	NA	NA	NA	NA
WP_003818991.1|3248488_3249496_+	zinc-binding dehydrogenase	NA	NA	NA	NA	NA
WP_023999677.1|3249640_3250363_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930007.1|3250378_3251401_-	autotransporter outer membrane beta-barrel domain-containing protein	NA	NA	NA	NA	NA
WP_010930006.1|3251717_3252452_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930005.1|3252536_3254282_+	acetolactate synthase	NA	NA	NA	NA	NA
WP_010930004.1|3254278_3255031_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930003.1|3255075_3256032_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003818983.1|3256120_3256687_+	membrane protein	NA	NA	NA	NA	NA
WP_010930002.1|3256694_3257555_-	D-amino acid aminotransferase	NA	NA	NA	NA	NA
WP_020699739.1|3257584_3258313_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	42.4	3.4e-32
WP_003807497.1|3258344_3259028_-	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_010930000.1|3259865_3260780_-	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929999.1|3260844_3261753_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929998.1|3261843_3263268_-	TolC family protein	NA	NA	NA	NA	NA
WP_010929997.1|3263269_3264592_-	cyclolysin T1SS periplasmic adaptor subunit CyaD	NA	NA	NA	NA	NA
WP_010929996.1|3264588_3266727_-	cyclolysin T1SS permease/ATPase CyaB	NA	W8CYL7	Bacillus_phage	29.2	2.7e-45
WP_010929995.1|3266804_3271925_-	bifunctional adenylate cyclase toxin/hemolysin CyaA	NA	NA	NA	NA	NA
WP_153302771.1|3272025_3272334_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929994.1|3272403_3272961_+	cyclolysin-activating lysine-acyltransferase	NA	NA	NA	NA	NA
WP_010929993.1|3272976_3274458_-	NAD-dependent succinate-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
WP_010929992.1|3276628_3277966_-	FAD-binding oxidoreductase	NA	NA	NA	NA	NA
WP_010929991.1|3278000_3279998_-	hydantoinase B/oxoprolinase family protein	NA	NA	NA	NA	NA
WP_010929990.1|3280015_3282064_-	hydantoinase/oxoprolinase family protein	NA	NA	NA	NA	NA
WP_010929989.1|3282194_3283061_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929988.1|3283329_3284295_-	octaprenyl diphosphate synthase	NA	NA	NA	NA	NA
WP_010929987.1|3284409_3285558_-	fumarylacetoacetate hydrolase family protein	NA	NA	NA	NA	NA
WP_003807462.1|3285982_3286294_+	50S ribosomal protein L21	NA	NA	NA	NA	NA
WP_003807460.1|3286327_3286588_+	50S ribosomal protein L27	NA	NA	NA	NA	NA
WP_003807459.1|3286737_3287871_+	GTPase ObgE	NA	NA	NA	NA	NA
WP_003807457.1|3287941_3289078_+	glutamate 5-kinase	NA	A0A1X9I5D0	Streptococcus_phage	44.8	5.8e-63
WP_010925762.1|3289243_3290038_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_003807452.1|3290100_3290544_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_005012808.1|3290659_3291610_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929985.1|3291711_3292140_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010929984.1|3292212_3294408_+	DUF1156 domain-containing protein	NA	NA	NA	NA	NA
WP_005013747.1|3294629_3295580_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|3295678_3296629_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023852739.1|3296588_3297113_-	sigma-70 family RNA polymerase sigma factor	NA	NA	NA	NA	NA
WP_003814467.1|3297244_3298216_+	FecR family protein	NA	NA	NA	NA	NA
WP_010929983.1|3298335_3300780_+	TonB-dependent siderophore receptor	NA	NA	NA	NA	NA
WP_010929982.1|3300795_3301386_-	polyisoprenoid-binding protein	NA	NA	NA	NA	NA
WP_010929591.1|3301629_3302580_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 28
NZ_CP010250	Bordetella pertussis strain H788 chromosome, complete genome	4106823	3305788	3412189	4106823	protease,tRNA,tail,terminase,transposase	uncultured_Caudovirales_phage(14.29%)	110	NA	NA
WP_005013747.1|3305788_3306739_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814459.1|3306739_3307309_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929980.1|3307376_3308192_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929979.1|3308358_3309978_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929978.1|3310056_3310998_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010929977.1|3310997_3311882_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010927038.1|3311885_3313538_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.8	6.0e-16
WP_010929976.1|3313577_3314975_+	amidase family protein	NA	NA	NA	NA	NA
WP_019247242.1|3315016_3316396_+	aminotransferase class III-fold pyridoxal phosphate-dependent enzyme	NA	NA	NA	NA	NA
WP_003814443.1|3316435_3316654_-	DUF1059 domain-containing protein	NA	NA	NA	NA	NA
WP_003814441.1|3316994_3317867_+	oxaloacetate decarboxylase	NA	NA	NA	NA	NA
WP_005012067.1|3318026_3318977_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|3319075_3320026_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814437.1|3320757_3321135_+	4a-hydroxytetrahydrobiopterin dehydratase	NA	NA	NA	NA	NA
WP_003814436.1|3321119_3321821_-	membrane protein	NA	NA	NA	NA	NA
WP_010931409.1|3321964_3322657_-	nucleotidyltransferase family protein	NA	NA	NA	NA	NA
WP_010931410.1|3322656_3323760_-	phosphotransferase	NA	NA	NA	NA	NA
WP_010931411.1|3323869_3326242_+	LPS-assembly protein LptD	NA	NA	NA	NA	NA
WP_010931412.1|3326238_3327798_+	chaperone SurA	NA	NA	NA	NA	NA
WP_010931413.1|3327822_3328620_+	16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA	NA	NA	NA	NA	NA
WP_010931414.1|3328651_3329797_-	glycerate kinase	NA	W6LM47	Streptococcus_phage	42.2	1.7e-41
WP_003814419.1|3329901_3331344_+	pyruvate kinase	NA	NA	NA	NA	NA
WP_010929184.1|3331346_3332576_-	spore maturation protein	NA	NA	NA	NA	NA
WP_005012808.1|3334713_3335664_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247922.1|3336793_3337351_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019247923.1|3337326_3337677_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003814657.1|3337845_3338640_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.6	2.4e-15
WP_010931416.1|3338636_3339686_-	iron ABC transporter permease	NA	NA	NA	NA	NA
WP_003814652.1|3339685_3340375_-	tol-pal system protein YbgF	NA	NA	NA	NA	NA
WP_003814650.1|3340461_3340959_-	peptidoglycan-associated lipoprotein Pal	NA	NA	NA	NA	NA
WP_010931417.1|3340990_3342307_-	Tol-Pal system protein TolB	NA	NA	NA	NA	NA
WP_010931418.1|3342323_3343298_-	cell envelope integrity protein TolA	NA	NA	NA	NA	NA
WP_003814643.1|3343334_3343793_-	protein TolR	NA	NA	NA	NA	NA
WP_003814641.1|3343792_3344473_-	protein TolQ	NA	NA	NA	NA	NA
WP_010931419.1|3344475_3344904_-	tol-pal system-associated acyl-CoA thioesterase	NA	NA	NA	NA	NA
WP_003814636.1|3344956_3346687_-|tRNA	proline--tRNA ligase	tRNA	A0A2K9L3R9	Tupanvirus	29.4	4.6e-11
WP_003814635.1|3346752_3347325_+	RNA pyrophosphohydrolase	NA	NA	NA	NA	NA
WP_010931420.1|3347305_3347992_+	response regulator	NA	NA	NA	NA	NA
WP_010931421.1|3348347_3349019_+	SOS response-associated peptidase	NA	Q5QF62	Pseudomonas_virus	39.9	4.7e-36
WP_010931422.1|3349347_3349569_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010926433.1|3349568_3349850_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931423.1|3349846_3350362_-	DUF2514 family protein	NA	NA	NA	NA	NA
WP_010931424.1|3350361_3350913_-	lysozyme	NA	NA	NA	NA	NA
WP_010931425.1|3350891_3351134_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931426.1|3351138_3351951_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010926428.1|3351950_3352214_-	hypothetical protein	NA	NA	NA	NA	NA
WP_124740660.1|3352254_3352452_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931428.1|3352432_3352849_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931429.1|3352853_3356810_-	DUF1983 domain-containing protein	NA	A0A0B5A1N2	Achromobacter_phage	40.8	3.9e-215
WP_010931430.1|3356802_3357192_-	C40 family peptidase	NA	A0A0G3EYJ9	Achromobacter_phage	50.0	3.0e-35
WP_010931431.1|3357188_3357722_-	DUF1833 family protein	NA	A5A3Q9	Burkholderia_phage	46.9	1.1e-40
WP_010931432.1|3357789_3358149_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931433.1|3358158_3360771_-|tail	phage tail tape measure protein	tail	A0A2H4J107	uncultured_Caudovirales_phage	38.6	4.9e-105
WP_010931434.1|3360796_3361087_-	DUF1799 domain-containing protein	NA	A0A2H4JBP7	uncultured_Caudovirales_phage	45.2	3.7e-14
WP_003813412.1|3361104_3361434_-|tail	phage tail assembly chaperone	tail	A0A2H4J121	uncultured_Caudovirales_phage	44.0	2.9e-15
WP_010931435.1|3361443_3361962_-|tail	phage tail protein	tail	A0A1S5R1H0	Pseudomonas_phage	38.3	5.4e-24
WP_010931436.1|3362216_3362717_-	HNH endonuclease	NA	A0A1I9SEX5	Klebsiella_phage	45.1	4.4e-31
WP_010931437.1|3362724_3363147_-	DUF4128 domain-containing protein	NA	NA	NA	NA	NA
WP_010931438.1|3363143_3363542_-	hypothetical protein	NA	I6PCW1	Cronobacter_phage	38.0	4.2e-16
WP_010931439.1|3363538_3363934_-	hypothetical protein	NA	A0A2D2W284	Stenotrophomonas_phage	35.0	7.8e-07
WP_162096760.1|3363933_3364122_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247789.1|3364135_3364618_-	hypothetical protein	NA	A0A2H4JE38	uncultured_Caudovirales_phage	37.1	1.8e-13
WP_010931442.1|3364680_3364932_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012808.1|3365606_3366557_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931443.1|3366985_3367588_-	hypothetical protein	NA	R9TF81	Synechococcus_phage	43.6	7.9e-27
WP_010931444.1|3367710_3367953_-	hypothetical protein	NA	A0A0H5AUE5	Pseudomonas_phage	53.2	5.6e-16
WP_010931445.1|3367958_3369014_-	hypothetical protein	NA	A0A0H5BBX3	Pseudomonas_phage	50.6	2.6e-97
WP_010931446.1|3369042_3370461_-	DUF4055 domain-containing protein	NA	R9TF43	Synechococcus_phage	42.1	2.2e-99
WP_010931447.1|3370463_3371741_-|terminase	terminase	terminase	A0A1B1P9C9	Acinetobacter_phage	64.7	2.4e-150
WP_019247942.1|3371727_3372213_-|transposase	transposase	transposase	C7U0W1	Enterobacteria_phage	61.5	7.3e-39
WP_005012067.1|3372852_3373803_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_161633094.1|3374059_3374749_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023853179.1|3374741_3374993_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010931451.1|3375547_3376159_+	S24 family peptidase	NA	NA	NA	NA	NA
WP_019247378.1|3376230_3376437_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|3376688_3377639_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019248926.1|3377737_3378811_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931475.1|3378978_3379773_+	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010925795.1|3379812_3380337_-	DUF934 domain-containing protein	NA	NA	NA	NA	NA
WP_010931474.1|3380329_3382072_-	nitrite/sulfite reductase	NA	NA	NA	NA	NA
WP_010931473.1|3382281_3383040_-	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	24.4	4.4e-14
WP_010931472.1|3383042_3383750_-	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	25.4	8.2e-07
WP_010931471.1|3383766_3384648_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_019247734.1|3384658_3385417_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_019248554.1|3385385_3386141_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931468.1|3386210_3387629_+	amidase	NA	NA	NA	NA	NA
WP_003819076.1|3387650_3388301_-	carbonic anhydrase	NA	NA	NA	NA	NA
WP_033446132.1|3388434_3388770_-	ASCH domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|3388858_3389809_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930800.1|3389907_3390858_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931467.1|3390934_3392755_+	DNA helicase RecQ	NA	L7RCS0	Acanthamoeba_polyphaga_moumouvirus	35.3	3.1e-74
WP_010931466.1|3392759_3393833_-	Holliday junction branch migration DNA helicase RuvB	NA	A0A127AWE7	Bacillus_phage	25.7	2.3e-08
WP_003814230.1|3393955_3394924_+	threo-3-hydroxy-L-aspartate ammonia-lyase	NA	NA	NA	NA	NA
WP_010927008.1|3394997_3395909_+	complex I NDUFA9 subunit family protein	NA	NA	NA	NA	NA
WP_003814226.1|3395927_3396500_-	Holliday junction branch migration protein RuvA	NA	NA	NA	NA	NA
WP_010931465.1|3396580_3397129_-	crossover junction endodeoxyribonuclease RuvC	NA	NA	NA	NA	NA
WP_010931464.1|3397128_3398718_-	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase	NA	Q58MG4	Prochlorococcus_phage	47.2	8.7e-65
WP_003814221.1|3398787_3399027_-	DNA-binding protein	NA	NA	NA	NA	NA
WP_023995141.1|3399067_3400093_-|tRNA	tRNA dihydrouridine synthase DusB	tRNA	NA	NA	NA	NA
WP_003814217.1|3400158_3401340_-	UbiH/UbiF/VisC/COQ6 family ubiquinone biosynthesis hydroxylase	NA	NA	NA	NA	NA
WP_010931463.1|3401436_3401889_+	membrane protein	NA	NA	NA	NA	NA
WP_010931462.1|3401898_3403239_-	aminopeptidase P N-terminal domain-containing protein	NA	NA	NA	NA	NA
WP_010931461.1|3403555_3404593_+	sodium:calcium antiporter	NA	NA	NA	NA	NA
WP_003814209.1|3404974_3405334_+	hypothetical protein	NA	NA	NA	NA	NA
WP_041166340.1|3405417_3406359_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_076879617.1|3406433_3407384_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814206.1|3407677_3408772_+	porin	NA	NA	NA	NA	NA
WP_003814205.1|3408853_3409735_+	cytochrome c oxidase assembly protein	NA	NA	NA	NA	NA
WP_003814203.1|3409756_3410596_-	UTP--glucose-1-phosphate uridylyltransferase GalU	NA	A0A127AW70	Bacillus_phage	48.9	1.1e-66
WP_010931459.1|3410671_3412189_+|protease	M48 family metalloprotease	protease	NA	NA	NA	NA
>prophage 29
NZ_CP010250	Bordetella pertussis strain H788 chromosome, complete genome	4106823	3706852	3839778	4106823	tRNA,integrase,transposase	uncultured_Mediterranean_phage(10.34%)	114	3751495:3751512	3796135:3796152
WP_005013747.1|3706852_3707803_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929878.1|3707799_3708435_-	LysE family transporter	NA	NA	NA	NA	NA
WP_003818466.1|3708564_3709464_+	LysR family transcriptional regulator ArgP	NA	NA	NA	NA	NA
WP_003807278.1|3709559_3710051_+	copper chaperone PCu(A)C	NA	NA	NA	NA	NA
WP_010929877.1|3710097_3711063_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929876.1|3712196_3713438_+	PLP-dependent aminotransferase family protein	NA	A0A1X9I5H2	Streptococcus_phage	24.9	1.9e-14
WP_003807287.1|3713551_3714568_+	amino acid ABC transporter substrate-binding protein	NA	A0A1B1IT51	uncultured_Mediterranean_phage	43.8	3.5e-75
WP_010929875.1|3714602_3715079_-	membrane protein	NA	NA	NA	NA	NA
WP_003807291.1|3715221_3716130_-	hydroxymethylglutaryl-CoA lyase	NA	NA	NA	NA	NA
WP_010929874.1|3716243_3717356_-	DNA-protecting protein DprA	NA	S6BFL3	Thermus_phage	35.0	1.9e-21
WP_003818475.1|3717456_3717990_-	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_003818477.1|3718078_3719329_+	kynureninase	NA	NA	NA	NA	NA
WP_003807300.1|3719430_3719943_+	peptide deformylase	NA	E3SLL2	Synechococcus_phage	43.3	8.5e-22
WP_005013747.1|3720041_3720992_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929873.1|3721057_3721996_+|tRNA	methionyl-tRNA formyltransferase	tRNA	E3SNR5	Prochlorococcus_phage	35.7	1.4e-09
WP_010929872.1|3722018_3722645_-	pyridoxamine 5'-phosphate oxidase family protein	NA	NA	NA	NA	NA
WP_003818481.1|3722641_3723298_-	HAD hydrolase-like protein	NA	NA	NA	NA	NA
WP_010929871.1|3723294_3723897_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929870.1|3723903_3724491_-	TIGR00730 family Rossman fold protein	NA	A0A2I2L3F0	Orpheovirus	23.3	1.1e-07
WP_010929869.1|3724671_3725241_+	bacterioferritin	NA	NA	NA	NA	NA
WP_003807313.1|3725311_3726631_-	30S ribosomal protein S12 methylthiotransferase RimO	NA	NA	NA	NA	NA
WP_003807315.1|3726737_3726929_-	4-oxalocrotonate tautomerase	NA	NA	NA	NA	NA
WP_010929868.1|3727180_3728470_+	FAD-binding oxidoreductase	NA	NA	NA	NA	NA
WP_010929867.1|3728624_3729620_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003807322.1|3729704_3730379_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005013747.1|3730375_3731326_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003816336.1|3731487_3732729_+	ornithine--oxo-acid transaminase	NA	A0A1V0SKB7	Klosneuvirus	25.2	4.0e-25
WP_010929866.1|3732725_3733670_+	arginase	NA	A0A0N9R043	Chrysochromulina_ericina_virus	33.3	9.5e-27
WP_005012067.1|3733788_3734739_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023853484.1|3734698_3735628_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003807759.1|3735681_3736017_-	carboxymuconolactone decarboxylase family protein	NA	NA	NA	NA	NA
WP_010929865.1|3736061_3736826_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010929864.1|3736849_3737590_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929863.1|3737597_3739151_-	acyl--CoA ligase	NA	A0A2K9L3I8	Tupanvirus	22.6	1.5e-13
WP_010929862.1|3739185_3740163_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_023853476.1|3740435_3741017_-	ureidoglycolate lyase	NA	NA	NA	NA	NA
WP_094145972.1|3741068_3747971_-	autotransporter BatB	NA	NA	NA	NA	NA
WP_003807750.1|3748417_3748549_-	entericidin A/B family lipoprotein	NA	NA	NA	NA	NA
WP_010929858.1|3748814_3749021_-	DUF3596 domain-containing protein	NA	NA	NA	NA	NA
WP_010929857.1|3750025_3750685_+	HAD-IA family hydrolase	NA	NA	NA	NA	NA
WP_010929856.1|3750712_3751858_+	DSD1 family PLP-dependent enzyme	NA	NA	NA	NA	NA
3751495:3751512	attL	CAGCGTGCTGGCCACCGT	NA	NA	NA	NA
WP_003807743.1|3751998_3752334_+	YegP family protein	NA	NA	NA	NA	NA
WP_010929855.1|3752408_3753269_-	hypothetical protein	NA	A0A2C9D0H9	Yersinia_phage	53.6	1.7e-51
WP_010929854.1|3753532_3754234_-	glutathione S-transferase	NA	NA	NA	NA	NA
WP_019248860.1|3754403_3754799_+	RidA family protein	NA	NA	NA	NA	NA
WP_005012067.1|3754908_3755859_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929852.1|3755869_3756511_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010926414.1|3756677_3756920_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929851.1|3757018_3757969_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929850.1|3758004_3758472_+	hypothetical protein	NA	Q3HQX1	Burkholderia_phage	71.3	2.1e-43
WP_010926411.1|3758705_3759083_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010926410.1|3759079_3759262_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929849.1|3759265_3760252_+	recombinase RecT	NA	H9C0R8	Aeromonas_phage	57.3	2.0e-67
WP_010929848.1|3760248_3760896_+	YqaJ viral recombinase family protein	NA	A0A0U2BXF3	Paracoccus_phage	41.4	2.0e-31
WP_010929847.1|3760953_3761481_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247983.1|3761517_3762702_+	hypothetical protein	NA	A0A291L9X3	Bordetella_phage	37.8	1.5e-24
WP_010929845.1|3762712_3763054_+	hypothetical protein	NA	A0A0H5ARN8	Pseudomonas_phage	45.3	1.0e-10
WP_010926403.1|3763166_3763367_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010929843.1|3763363_3764353_-|integrase	site-specific integrase	integrase	A0A1B1P9F9	Acinetobacter_phage	44.4	4.4e-75
WP_010929841.1|3765839_3767810_-	DUF3220 domain-containing protein	NA	NA	NA	NA	NA
WP_003814626.1|3768051_3768450_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929840.1|3768458_3769382_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|3769839_3770790_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010927254.1|3771020_3772712_-	membrane protein insertase YidC	NA	NA	NA	NA	NA
WP_003816027.1|3772760_3773033_-	membrane protein insertion efficiency factor YidD	NA	A0A2H4PQM5	Staphylococcus_phage	52.2	7.0e-15
WP_003816026.1|3773029_3773401_-	ribonuclease P protein component	NA	NA	NA	NA	NA
WP_003816025.1|3773496_3773631_-	50S ribosomal protein L34	NA	NA	NA	NA	NA
WP_010929554.1|3774036_3775446_+	chromosomal replication initiator protein DnaA	NA	NA	NA	NA	NA
WP_010929839.1|3775448_3776558_+	DNA polymerase III subunit beta	NA	B4UTW9	Rhizobium_phage	32.6	1.2e-41
WP_010929838.1|3776652_3779106_+	DNA topoisomerase (ATP-hydrolyzing) subunit B	NA	G3M9Z3	Bacillus_virus	34.8	2.3e-112
WP_023853625.1|3779224_3780016_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010929836.1|3780135_3781563_+	amidase	NA	NA	NA	NA	NA
WP_010929835.1|3781601_3782573_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929834.1|3782991_3784155_+	alpha-hydroxy-acid oxidizing protein	NA	NA	NA	NA	NA
WP_010929833.1|3784242_3785088_+	AraC family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|3786644_3787595_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003818201.1|3788149_3788524_-	MerR family DNA-binding transcriptional regulator	NA	NA	NA	NA	NA
WP_010929807.1|3788598_3789657_+	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
WP_005012067.1|3789680_3790631_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929808.1|3793512_3794682_+	acetyl-CoA C-acyltransferase	NA	NA	NA	NA	NA
WP_003815953.1|3794782_3796390_+	methylcrotonoyl-CoA carboxylase	NA	A0A1B2ITV7	Pike_perch_iridovirus	57.3	5.4e-22
3796135:3796152	attR	CAGCGTGCTGGCCACCGT	NA	NA	NA	NA
WP_010929810.1|3796436_3798458_+	acetyl/propionyl/methylcrotonyl-CoA carboxylase subunit alpha	NA	NA	NA	NA	NA
WP_003815955.1|3798486_3798732_-	DUF1653 domain-containing protein	NA	NA	NA	NA	NA
WP_004565905.1|3798745_3799936_-	acetylornithine transaminase	NA	A0A1V0SKB7	Klosneuvirus	26.7	4.4e-21
WP_010929811.1|3800131_3801097_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929812.1|3801119_3802259_-	DSD1 family PLP-dependent enzyme	NA	NA	NA	NA	NA
WP_010929813.1|3802470_3803433_+	TAXI family TRAP transporter solute-binding subunit	NA	NA	NA	NA	NA
WP_010929814.1|3803556_3805581_+	TRAP transporter permease	NA	NA	NA	NA	NA
WP_010929815.1|3805777_3808021_+	TonB-dependent hemoglobin/transferrin/lactoferrin family receptor	NA	NA	NA	NA	NA
WP_003815964.1|3808299_3808758_+	DUF494 domain-containing protein	NA	NA	NA	NA	NA
WP_010929816.1|3809685_3812307_-	GDYXXLXY domain-containing protein	NA	NA	NA	NA	NA
WP_010929817.1|3812370_3814998_+	DNA topoisomerase III	NA	A0A0G2YA05	Acanthamoeba_polyphaga_mimivirus	25.4	6.1e-23
WP_010929818.1|3815149_3816214_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_020699616.1|3816213_3816984_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	33.9	8.1e-24
WP_010929819.1|3816992_3817826_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_003818225.1|3817838_3818618_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010929820.1|3818691_3820125_+	aldehyde dehydrogenase family protein	NA	NA	NA	NA	NA
WP_010929821.1|3820152_3820911_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010929822.1|3820966_3822817_-	biosynthetic-type acetolactate synthase large subunit	NA	E4WLQ6	Ostreococcus_tauri_virus	30.4	2.2e-59
WP_010929823.1|3822910_3823387_+	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_023853391.1|3823403_3824324_-	bestrophin	NA	NA	NA	NA	NA
WP_003818232.1|3824430_3824931_+	SET domain-containing protein-lysine N-methyltransferase	NA	NA	NA	NA	NA
WP_010929826.1|3825304_3825997_+	3,4-dihydroxy-2-butanone-4-phosphate synthase	NA	A0A2H4PQS2	Staphylococcus_phage	41.6	6.3e-36
WP_010929591.1|3826305_3827256_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931556.1|3827252_3831026_-	methionine synthase	NA	A0A140XBC7	Dickeya_phage	50.8	8.6e-10
WP_010931557.1|3831362_3833252_+	TonB-dependent receptor	NA	A0A0P0I887	Acinetobacter_phage	30.8	7.6e-07
WP_010931558.1|3833263_3834157_+	cobalamin-binding protein	NA	NA	NA	NA	NA
WP_010931559.1|3834260_3835058_+	thiazole synthase	NA	NA	NA	NA	NA
WP_010931560.1|3835054_3835906_+	bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase	NA	NA	NA	NA	NA
WP_003817656.1|3835967_3836648_+	protein-L-isoaspartate O-methyltransferase	NA	A0A1B1IU40	uncultured_Mediterranean_phage	34.8	3.5e-15
WP_019247189.1|3836675_3837011_+	TolC family protein	NA	NA	NA	NA	NA
WP_019247190.1|3837011_3837971_+	TolC family outer membrane protein	NA	NA	NA	NA	NA
WP_003815102.1|3837991_3838480_-	D-glycero-beta-D-manno-heptose 1-phosphate adenylyltransferase	NA	A0A1B1IUK5	uncultured_Mediterranean_phage	34.1	1.6e-17
WP_010931561.1|3838761_3839778_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
>prophage 30
NZ_CP010250	Bordetella pertussis strain H788 chromosome, complete genome	4106823	4028994	4082426	4106823	transposase	Planktothrix_phage(40.0%)	45	NA	NA
WP_010931661.1|4028994_4029945_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931662.1|4030114_4031341_+	bifunctional glutamate N-acetyltransferase/amino-acid acetyltransferase ArgJ	NA	NA	NA	NA	NA
WP_010931663.1|4031540_4032407_+	ATP-binding protein	NA	NA	NA	NA	NA
WP_003815027.1|4032399_4033362_+	Nudix family hydrolase	NA	A0A221LFJ1	Barns_Ness_breadcrumb_sponge_sobemo-like_virus	53.4	1.9e-06
WP_010927663.1|4033462_4034413_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|4034511_4035462_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929577.1|4035560_4036511_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994937.1|4036507_4038001_-	efflux transporter outer membrane subunit	NA	NA	NA	NA	NA
WP_003815032.1|4037997_4041105_-	multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_010931665.1|4041101_4044170_-	MdtB/MuxB family multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_010931666.1|4044166_4045417_-	MdtA/MuxA family multidrug efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
WP_003815038.1|4045597_4046359_-	cell division protein ZapD	NA	NA	NA	NA	NA
WP_019247320.1|4046391_4047042_-	dephospho-CoA kinase	NA	NA	NA	NA	NA
WP_003820519.1|4047044_4047884_-	prepilin peptidase	NA	NA	NA	NA	NA
WP_003815047.1|4048124_4048868_+	copper resistance protein NlpE N-terminal domain-containing protein	NA	NA	NA	NA	NA
WP_003815049.1|4048950_4049298_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003815051.1|4049395_4050238_-	pantoate--beta-alanine ligase	NA	NA	NA	NA	NA
WP_003815053.1|4050282_4051170_-	segregation/condensation protein A	NA	NA	NA	NA	NA
WP_003815055.1|4051196_4051385_-	DUF3460 family protein	NA	NA	NA	NA	NA
WP_010931669.1|4051482_4052940_+	DHA2 family efflux MFS transporter permease subunit	NA	NA	NA	NA	NA
WP_010931670.1|4052926_4054453_+	glycerol kinase GlpK	NA	NA	NA	NA	NA
WP_003815061.1|4054471_4054939_-	CopD family protein	NA	NA	NA	NA	NA
WP_010931671.1|4054938_4055961_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_169507388.1|4056081_4056801_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	39.9	4.7e-34
WP_003815066.1|4056876_4057977_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003815068.1|4057978_4059169_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003815070.1|4059288_4060305_-	amino acid ABC transporter substrate-binding protein	NA	A0A1B1IT51	uncultured_Mediterranean_phage	42.1	1.0e-71
WP_003815073.1|4060623_4061295_+	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	38.2	9.5e-29
WP_010927126.1|4061291_4062200_+	FtsX-like permease family protein	NA	NA	NA	NA	NA
WP_010931672.1|4062411_4063059_+	chemoreceptor glutamine deamidase CheD	NA	NA	NA	NA	NA
WP_010931673.1|4066910_4067987_+	A/G-specific adenine glycosylase	NA	NA	NA	NA	NA
WP_003815084.1|4067997_4068807_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003815086.1|4068896_4069670_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_023853639.1|4069852_4070803_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_077598841.1|4070691_4071714_+	CoA transferase	NA	NA	NA	NA	NA
WP_010931674.1|4071703_4072858_+	CoA transferase	NA	NA	NA	NA	NA
WP_010931675.1|4072897_4074310_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_019247370.1|4074434_4075301_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931677.1|4075302_4076127_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_023853488.1|4076123_4076885_+	nitroreductase	NA	M1I6Q5	Acanthocystis_turfacea_Chlorella_virus	31.0	2.0e-19
WP_003808010.1|4076965_4077652_-	TetR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931679.1|4077825_4078833_+	hydroxymethylglutaryl-CoA lyase	NA	NA	NA	NA	NA
WP_003819309.1|4078829_4079609_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010931680.1|4079666_4080929_+	CoA transferase	NA	NA	NA	NA	NA
WP_010929591.1|4081475_4082426_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
