The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP010249	Bordetella pertussis strain H564 chromosome, complete genome	4109554	27282	70036	4109554	tRNA,transposase	Synechococcus_phage(50.0%)	41	NA	NA
WP_010930363.1|27282_28233_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_023995007.1|28314_28650_-	CoA transferase	NA	NA	NA	NA	NA
WP_010929578.1|28674_29109_-	OB-fold domain-containing protein	NA	NA	NA	NA	NA
WP_019247164.1|29141_30359_-	thiolase family protein	NA	NA	NA	NA	NA
WP_010929580.1|30364_30862_-	MaoC family dehydratase	NA	NA	NA	NA	NA
WP_019247165.1|31069_32005_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929582.1|32214_33006_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010929583.1|33048_34470_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_010929584.1|34625_35576_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814398.1|35572_36763_-	MFS transporter	NA	NA	NA	NA	NA
WP_010929585.1|37012_37924_+|tRNA	glycine--tRNA ligase subunit alpha	tRNA	NA	NA	NA	NA
WP_010929586.1|37925_40064_+|tRNA	glycine--tRNA ligase subunit beta	tRNA	NA	NA	NA	NA
WP_003814404.1|40060_40600_+	D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase	NA	NA	NA	NA	NA
WP_003814405.1|40603_41332_+	1-acyl-sn-glycerol-3-phosphate acyltransferase	NA	NA	NA	NA	NA
WP_010929587.1|41318_42212_+	M48 family metallopeptidase	NA	NA	NA	NA	NA
WP_019247766.1|42282_42678_+	lactoylglutathione lyase	NA	NA	NA	NA	NA
WP_003814412.1|42687_43218_+	peptide deformylase	NA	E3SLL2	Synechococcus_phage	35.4	3.7e-12
WP_010929588.1|43663_44614_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929589.1|45200_45749_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815265.1|45720_45957_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003815255.1|46084_46978_+	AEC family transporter	NA	NA	NA	NA	NA
WP_010929590.1|48147_49395_+	homoserine O-acetyltransferase	NA	NA	NA	NA	NA
WP_003817748.1|49391_50006_+	methionine biosynthesis protein MetW	NA	NA	NA	NA	NA
WP_010929591.1|50141_51092_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_029443813.1|51134_52391_+	muropeptide transporter	NA	NA	NA	NA	NA
WP_010929592.1|53622_54357_-	aspartate/glutamate racemase family protein	NA	NA	NA	NA	NA
WP_019247224.1|54362_54953_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.6	3.2e-20
WP_003817737.1|54977_55667_-	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_023852650.1|55663_56425_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010929594.1|56504_57404_-	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_005012808.1|57497_58448_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929595.1|59248_60475_-	type II toxin-antitoxin system HipA family toxin	NA	NA	NA	NA	NA
WP_047122776.1|60474_60888_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010929597.1|61077_62019_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019248755.1|62442_63417_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929599.1|63473_64055_-	DJ-1/PfpI family protein	NA	NA	NA	NA	NA
WP_010929600.1|64067_64370_-	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA	NA
WP_029443770.1|64488_65547_-	2Fe-2S iron-sulfur cluster binding domain-containing protein	NA	NA	NA	NA	NA
WP_019247832.1|65581_66853_-	TRAP transporter large permease	NA	NA	NA	NA	NA
WP_010929603.1|67482_68664_-	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929584.1|69085_70036_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 2
NZ_CP010249	Bordetella pertussis strain H564 chromosome, complete genome	4109554	77634	136108	4109554	tRNA,transposase	Planktothrix_phage(22.22%)	54	NA	NA
WP_005012067.1|77634_78585_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_041166334.1|78659_79604_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929608.1|79600_81475_-	polysaccharide biosynthesis protein	NA	A0A2P1ELS8	Moumouvirus	26.9	2.0e-23
WP_003807102.1|82822_83527_-	DUF2837 family protein	NA	NA	NA	NA	NA
WP_003807104.1|83523_84630_-	glycosyltransferase family 4 protein	NA	NA	NA	NA	NA
WP_010929610.1|84891_85485_-	sugar transferase	NA	NA	NA	NA	NA
WP_023853419.1|85481_86669_-	DegT/DnrJ/EryC1/StrS family aminotransferase	NA	NA	NA	NA	NA
WP_010929612.1|86731_87991_-	glycosyltransferase family 4 protein	NA	NA	NA	NA	NA
WP_010929613.1|88014_89103_-	UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing)	NA	A0A0N9R0B2	Chrysochromulina_ericina_virus	36.3	4.8e-46
WP_010929614.1|89110_90211_-	DegT/DnrJ/EryC1/StrS family aminotransferase	NA	A0A2K9L0G1	Tupanvirus	29.7	3.3e-31
WP_003807114.1|90214_90790_-	N-acetyltransferase	NA	NA	NA	NA	NA
WP_003807115.1|90793_91846_-	Gfo/Idh/MocA family oxidoreductase	NA	NA	NA	NA	NA
WP_010929615.1|91976_92984_+	lipopolysaccharide heptosyltransferase I	NA	NA	NA	NA	NA
WP_010929616.1|92985_94272_+	3-deoxy-D-manno-octulosonic acid transferase	NA	NA	NA	NA	NA
WP_003807124.1|94288_94444_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929617.1|94468_95272_-	type III pantothenate kinase	NA	NA	NA	NA	NA
WP_010929618.1|95268_96135_-	biotin--[acetyl-CoA-carboxylase] ligase	NA	NA	NA	NA	NA
WP_010929619.1|96209_97340_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_003807131.1|97339_98179_+	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	32.4	9.1e-21
WP_010929620.1|99111_99714_+	membrane integrity-associated transporter subunit PqiC	NA	NA	NA	NA	NA
WP_010929621.1|99743_100397_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003807138.1|100529_101786_+	D-alanyl-D-alanine carboxypeptidase	NA	B6DZZ7	Stx2-converting_phage	40.5	6.2e-66
WP_010929622.1|101833_102733_+	D-amino acid aminotransferase	NA	NA	NA	NA	NA
WP_003818417.1|102808_103084_+	YbeD family protein	NA	NA	NA	NA	NA
WP_010929623.1|103091_103754_+	lipoyl(octanoyl) transferase LipB	NA	NA	NA	NA	NA
WP_003807146.1|103815_104817_+	lipoyl synthase	NA	NA	NA	NA	NA
WP_003807148.1|104831_105380_-	dTDP-4-dehydrorhamnose 3,5-epimerase	NA	A0A291LA62	Escherichia_phage	53.4	3.7e-47
WP_010929624.1|105437_106334_-	dTDP-4-dehydrorhamnose reductase	NA	NA	NA	NA	NA
WP_010929625.1|106330_107392_-	dTDP-glucose 4,6-dehydratase	NA	A0A1D7XFE8	Escherichia_phage	44.8	1.6e-78
WP_010929626.1|107427_108378_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929627.1|109277_110471_+	cystathionine beta-lyase	NA	NA	NA	NA	NA
WP_010929628.1|110552_111182_-	thiol:disulfide interchange protein DsbA/DsbL	NA	NA	NA	NA	NA
WP_010927242.1|111243_111927_-	SPOR domain-containing protein	NA	NA	NA	NA	NA
WP_023853376.1|111936_113619_-|tRNA	arginine--tRNA ligase	tRNA	NA	NA	NA	NA
WP_003815933.1|113906_114254_+	DUF1840 domain-containing protein	NA	NA	NA	NA	NA
WP_003815930.1|114344_114662_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931363.1|114944_115961_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003815929.1|116036_116837_-	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
WP_003815927.1|116833_117709_-	sugar ABC transporter permease	NA	NA	NA	NA	NA
WP_010929633.1|117719_119012_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929634.1|119054_120095_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.7	6.0e-22
WP_010929635.1|120200_121022_-	phosphodiesterase	NA	NA	NA	NA	NA
WP_005012067.1|121122_122073_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014905488.1|122171_123077_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	31.7	9.8e-21
WP_003815918.1|123073_123907_-	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_010929637.1|124743_125754_-	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_019247800.1|125750_126140_-	substrate-binding domain-containing protein	NA	NA	NA	NA	NA
WP_010929638.1|127033_128287_+	amidase	NA	NA	NA	NA	NA
WP_010929639.1|128377_130078_-	2-isopropylmalate synthase	NA	NA	NA	NA	NA
WP_010929640.1|130504_131152_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023853393.1|131150_132590_+	RNA polymerase factor sigma-54	NA	NA	NA	NA	NA
WP_003815905.1|132682_132985_+	bacterioferritin-associated ferredoxin	NA	NA	NA	NA	NA
WP_010929512.1|133012_133891_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|135157_136108_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 3
NZ_CP010249	Bordetella pertussis strain H564 chromosome, complete genome	4109554	164893	225404	4109554	tRNA,transposase,protease	Diachasmimorpha_longicaudata_entomopoxvirus(11.11%)	51	NA	NA
WP_005015810.1|164893_165844_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929659.1|167287_168190_-	YgcG family protein	NA	NA	NA	NA	NA
WP_003815889.1|168167_168797_-	LemA family protein	NA	NA	NA	NA	NA
WP_010929660.1|169079_170510_+	DEAD/DEAH box helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	29.8	5.8e-44
WP_010929661.1|170543_171173_+	LysE family transporter	NA	NA	NA	NA	NA
WP_003815895.1|171221_172829_+	peptide chain release factor 3	NA	A0A2K9L6L3	Tupanvirus	37.8	9.3e-14
WP_010929663.1|172853_173537_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815898.1|173618_174095_-	bacterioferritin	NA	NA	NA	NA	NA
WP_010929591.1|174301_175252_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929664.1|176367_176895_+	META domain-containing protein	NA	NA	NA	NA	NA
WP_010929665.1|176986_177802_+	META and DUF4377 domain-containing protein	NA	NA	NA	NA	NA
WP_003808370.1|177862_178597_+	sulfurtransferase	NA	NA	NA	NA	NA
WP_010929666.1|178634_180713_-|tRNA	methionine--tRNA ligase	tRNA	A0A1V0SHR2	Klosneuvirus	23.6	1.5e-27
WP_003808374.1|180962_181235_-	hypothetical protein	NA	NA	NA	NA	NA
WP_033446322.1|181336_182422_+	iron-sulfur cluster carrier protein ApbC	NA	NA	NA	NA	NA
WP_010929668.1|182425_184330_+	BamA/TamA family outer membrane protein	NA	NA	NA	NA	NA
WP_014486044.1|184326_188001_+	translocation/assembly module TamB domain-containing protein	NA	NA	NA	NA	NA
WP_010929670.1|188061_188625_+	dCTP deaminase	NA	S5VM63	Pseudomonas_phage	75.3	2.6e-72
WP_003808385.1|188632_189055_-	VOC family protein	NA	NA	NA	NA	NA
WP_010929671.1|189082_189502_-	VOC family protein	NA	NA	NA	NA	NA
WP_076879599.1|189530_190004_-	GNAT family N-acetyltransferase	NA	Q9AZG4	Lactococcus_phage	31.1	2.2e-11
WP_003808391.1|190103_190601_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003808393.1|190755_193026_+	arginine/lysine/ornithine decarboxylase	NA	NA	NA	NA	NA
WP_010929672.1|193074_194307_+	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_005012067.1|194405_195356_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929673.1|195458_196094_+	superoxide dismutase	NA	Q56AR7	Bacillus_thuringiensis_phage	73.8	2.8e-83
WP_019248671.1|196090_196984_+	ZIP family metal transporter	NA	NA	NA	NA	NA
WP_010929675.1|197378_198479_+	glycine cleavage system aminomethyltransferase GcvT	NA	NA	NA	NA	NA
WP_010929676.1|198560_198935_+	glycine cleavage system protein GcvH	NA	NA	NA	NA	NA
WP_010929677.1|198994_201859_+	aminomethyl-transferring glycine dehydrogenase	NA	E3SN07	Prochlorococcus_phage	51.4	1.2e-261
WP_010929678.1|202003_202744_-	FadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929679.1|202813_204025_+	CoA transferase	NA	NA	NA	NA	NA
WP_010929680.1|204053_205022_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931070.1|205635_206586_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929699.1|206742_207066_+	phosphate starvation-inducible protein	NA	NA	NA	NA	NA
WP_023853200.1|207170_208211_-	cyclase family protein	NA	NA	NA	NA	NA
WP_010929697.1|208216_208996_-	3-oxoadipate enol-lactonase	NA	NA	NA	NA	NA
WP_003807672.1|209041_209338_-	YciI family protein	NA	NA	NA	NA	NA
WP_003807674.1|209363_209639_-	muconolactone Delta-isomerase	NA	NA	NA	NA	NA
WP_003819086.1|209695_210340_-	CoA transferase subunit B	NA	NA	NA	NA	NA
WP_010929696.1|210339_211026_-	3-oxoacid CoA-transferase subunit A	NA	NA	NA	NA	NA
WP_010929695.1|211155_212007_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929694.1|212057_212783_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010929693.1|212814_214164_-	short-chain fatty acid transporter	NA	NA	NA	NA	NA
WP_010929692.1|214275_215208_-	3-hydroxyacyl-CoA dehydrogenase family protein	NA	NA	NA	NA	NA
WP_033446404.1|215665_218461_-|protease	serine protease autotransporter SphB1	protease	NA	NA	NA	NA
WP_010929690.1|219054_221997_-	phosphoenolpyruvate carboxylase	NA	NA	NA	NA	NA
WP_010929689.1|222068_222788_+	7-cyano-7-deazaguanine synthase QueC	NA	A0A0A0RPC6	Escherichia_phage	43.9	8.0e-50
WP_010929688.1|222826_223375_-	N-acetyltransferase	NA	A0A2H4J136	uncultured_Caudovirales_phage	41.7	1.2e-21
WP_010929687.1|223529_224429_+	virginiamycin B lyase	NA	NA	NA	NA	NA
WP_005012808.1|224453_225404_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 4
NZ_CP010249	Bordetella pertussis strain H564 chromosome, complete genome	4109554	233336	286924	4109554	tRNA,transposase,protease	Bacillus_phage(25.0%)	47	NA	NA
WP_005012067.1|233336_234287_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010927663.1|234373_235324_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930742.1|235320_236271_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929700.1|236369_237167_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_003814363.1|238116_238527_+	carboxymuconolactone decarboxylase family protein	NA	NA	NA	NA	NA
WP_003814358.1|239548_240292_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814356.1|240335_241379_-	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003814355.1|241549_243652_+	TRAP transporter large permease subunit	NA	NA	NA	NA	NA
WP_003814351.1|245062_246019_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929701.1|246037_246529_-	2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase	NA	NA	NA	NA	NA
WP_010929702.1|246525_247881_-	polynucleotide adenylyltransferase PcnB	NA	A0A1B1IVF3	uncultured_Mediterranean_phage	36.8	3.4e-25
WP_010929703.1|247881_248580_-	HAD-IB family hydrolase	NA	NA	NA	NA	NA
WP_010929704.1|248576_249278_-	DnaA regulatory inactivator Hda	NA	NA	NA	NA	NA
WP_003814339.1|249530_250580_+	phosphoribosylformylglycinamidine cyclo-ligase	NA	Q58MH8	Prochlorococcus_phage	43.6	5.6e-68
WP_003814337.1|250685_251627_-|tRNA	tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA	tRNA	NA	NA	NA	NA
WP_010929705.1|251623_253513_-	DNA mismatch repair endonuclease MutL	NA	A0A1B2LRQ5	Wolbachia_phage	32.8	3.3e-79
WP_003814332.1|253599_254238_+	VTT domain-containing protein	NA	NA	NA	NA	NA
WP_019247543.1|254380_255766_-	N-acetylmuramoyl-L-alanine amidase	NA	A0A2H4JCM7	uncultured_Caudovirales_phage	30.3	4.5e-17
WP_010929706.1|255696_256233_-|tRNA	bifunctional alanine racemase/tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE	tRNA	NA	NA	NA	NA
WP_010929707.1|256384_257776_+	class II fumarate hydratase	NA	NA	NA	NA	NA
WP_010929708.1|257792_258773_-	AEC family transporter	NA	NA	NA	NA	NA
WP_003814324.1|258908_259892_+	tripartite tricarboxylate transporter substrate binding protein BugE	NA	NA	NA	NA	NA
WP_010929709.1|259956_260856_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814321.1|260962_262717_+	gamma-glutamyltransferase	NA	NA	NA	NA	NA
WP_010929710.1|262724_263849_-	CoA transferase	NA	NA	NA	NA	NA
WP_010929711.1|263862_264843_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_005012067.1|265573_266524_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929712.1|267083_267629_+	GbsR/MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929713.1|267712_269332_+	cytochrome d ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
WP_004567834.1|269347_270502_+	cytochrome d ubiquinol oxidase subunit II	NA	NA	NA	NA	NA
WP_003817696.1|270515_270641_+	cytochrome bd-I oxidase subunit CydX	NA	NA	NA	NA	NA
WP_010929714.1|270637_272389_+	thiol reductant ABC exporter subunit CydD	NA	W8CYL7	Bacillus_phage	23.8	3.4e-09
WP_010929715.1|272385_274065_+	thiol reductant ABC exporter subunit CydC	NA	W8CYL7	Bacillus_phage	27.6	3.6e-16
WP_010929716.1|274127_274676_+	adenine phosphoribosyltransferase	NA	A0A1V0SKE5	Klosneuvirus	43.1	1.3e-28
WP_010929717.1|275818_276097_+	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|277140_278091_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929718.1|278368_278530_+	DUF4224 domain-containing protein	NA	NA	NA	NA	NA
WP_010929719.1|278537_278678_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815821.1|279196_279646_-|protease	ClpXP protease specificity-enhancing factor	protease	NA	NA	NA	NA
WP_003815819.1|279655_280267_-	glutathione S-transferase N-terminal domain-containing protein	NA	NA	NA	NA	NA
WP_019247426.1|280425_281280_-	cytochrome c1	NA	NA	NA	NA	NA
WP_003815816.1|281299_282682_-	cytochrome bc complex cytochrome b subunit	NA	NA	NA	NA	NA
WP_003815815.1|282746_283388_-	ubiquinol-cytochrome c reductase iron-sulfur subunit	NA	NA	NA	NA	NA
WP_010929721.1|283527_283986_+	large conductance mechanosensitive channel protein MscL	NA	NA	NA	NA	NA
WP_010927226.1|284010_284787_-	Nif3-like dinuclear metal center hexameric protein	NA	NA	NA	NA	NA
WP_014906092.1|284840_285977_+	trypsin-like peptidase domain-containing protein	NA	W5SAB9	Pithovirus	31.2	1.2e-07
WP_010930800.1|285973_286924_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 6
NZ_CP010249	Bordetella pertussis strain H564 chromosome, complete genome	4109554	555309	614609	4109554	tRNA,transposase	Acinetobacter_phage(27.27%)	48	NA	NA
WP_023852617.1|555309_556260_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003815367.1|557583_558360_-	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_010931383.1|558394_560167_+	M61 family metallopeptidase	NA	NA	NA	NA	NA
WP_010931382.1|560168_561071_-	NAD(P)/FAD-dependent oxidoreductase	NA	G3MA85	Bacillus_virus	24.0	1.9e-08
WP_003817821.1|561195_561555_+	dihydroneopterin aldolase	NA	NA	NA	NA	NA
WP_010931381.1|561586_562549_+|tRNA	tRNA 2-thiocytidine(32) synthetase TtcA	tRNA	A0A0U2S5Z2	Escherichia_phage	64.5	4.6e-93
WP_005012067.1|562647_563598_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931380.1|563610_564546_-	D-2-hydroxyacid dehydrogenase family protein	NA	A0A1J0F959	Only_Syngen_Nebraska_virus	27.7	6.4e-15
WP_010931379.1|564605_565445_-	thiol:disulfide interchange protein DsbC	NA	NA	NA	NA	NA
WP_010931378.1|565441_566611_-	UbiH/UbiF family hydroxylase	NA	NA	NA	NA	NA
WP_003815379.1|566607_567897_-	murein transglycosylase A	NA	NA	NA	NA	NA
WP_003815381.1|567939_568314_-	Co2+/Mg2+ efflux protein ApaG	NA	NA	NA	NA	NA
WP_003815384.1|568419_569157_+	ribulose-phosphate 3-epimerase	NA	NA	NA	NA	NA
WP_010931377.1|569164_569869_+	phosphoglycolate phosphatase	NA	NA	NA	NA	NA
WP_010931376.1|570132_571653_+	anthranilate synthase component I	NA	S4VT78	Pandoravirus	32.1	9.0e-43
WP_003815390.1|571708_572272_+	aminodeoxychorismate/anthranilate synthase component II	NA	A0A0P0IKJ1	Acinetobacter_phage	62.1	1.1e-65
WP_003817833.1|572290_573322_+	anthranilate phosphoribosyltransferase	NA	A0A0N7IRD9	Acinetobacter_phage	42.7	7.4e-73
WP_010931375.1|573318_574107_+	indole-3-glycerol phosphate synthase TrpC	NA	A0A0P0IR83	Acinetobacter_phage	53.0	5.1e-66
WP_019247413.1|574127_574286_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023997720.1|574282_575272_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|577028_577979_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931374.1|579201_580104_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814312.1|580105_580960_-	formyltetrahydrofolate deformylase	NA	NA	NA	NA	NA
WP_010931373.1|581006_582116_-	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010931372.1|582126_582645_-	flavin reductase family protein	NA	NA	NA	NA	NA
WP_003814302.1|582674_583307_-	pyridoxamine 5'-phosphate oxidase	NA	NA	NA	NA	NA
WP_003814300.1|583378_584038_-	gamma-glutamylcyclotransferase	NA	NA	NA	NA	NA
WP_003814298.1|584034_585255_-	MFS transporter	NA	NA	NA	NA	NA
WP_019247745.1|585523_586396_+|tRNA	tRNA threonylcarbamoyladenosine dehydratase	tRNA	NA	NA	NA	NA
WP_010931370.1|586551_587289_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931369.1|587291_588923_-	AMP-binding protein	NA	NA	NA	NA	NA
WP_010931368.1|589018_590008_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010927020.1|590004_590715_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010931363.1|590810_591827_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003814287.1|592098_592725_-	aminotransferase class IV	NA	NA	NA	NA	NA
WP_010931367.1|592780_593908_-	aminodeoxychorismate synthase component I	NA	S4VT78	Pandoravirus	37.8	3.8e-38
WP_003814283.1|593913_599631_-	excinuclease ABC subunit UvrA	NA	A0A1B1IVR3	uncultured_Mediterranean_phage	39.5	1.0e-195
WP_003814277.1|600198_601143_-	LysR family transcriptional regulator	NA	A0A2P0ZL89	Lactobacillus_phage	23.2	8.4e-07
WP_003814275.1|601331_602267_+	glycosyltransferase family 2 protein	NA	NA	NA	NA	NA
WP_010931365.1|602384_603956_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019247692.1|604035_605244_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_019247693.1|605741_606659_+	DMT family transporter	NA	NA	NA	NA	NA
WP_003814254.1|609019_609241_+	glycine zipper 2TM domain-containing protein	NA	NA	NA	NA	NA
WP_010929632.1|609571_610588_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003814252.1|610672_610924_-	cell division topological specificity factor MinE	NA	NA	NA	NA	NA
WP_003814250.1|610927_611743_-	septum site-determining protein MinD	NA	NA	NA	NA	NA
WP_010931362.1|611855_612734_-	septum site-determining protein MinC	NA	NA	NA	NA	NA
WP_003820957.1|612845_614609_-|tRNA	glutamine--tRNA ligase/YqeY domain fusion protein	tRNA	A0A222YZ70	Escherichia_phage	50.0	5.0e-162
>prophage 7
NZ_CP010249	Bordetella pertussis strain H564 chromosome, complete genome	4109554	620764	674505	4109554	transposase	Salmonella_phage(33.33%)	48	NA	NA
WP_010930179.1|620764_621715_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994844.1|621810_622782_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931357.1|622786_623467_-	tellurite resistance TerB family protein	NA	NA	NA	NA	NA
WP_003814742.1|623604_623997_+	OsmC family protein	NA	NA	NA	NA	NA
WP_010931561.1|624104_625121_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003814739.1|625360_626146_-	enoyl-ACP reductase FabI	NA	NA	NA	NA	NA
WP_010931356.1|626240_627650_-	transglycosylase SLT domain-containing protein	NA	NA	NA	NA	NA
WP_010927090.1|627660_628461_-	hydroxyacylglutathione hydrolase	NA	NA	NA	NA	NA
WP_010931355.1|628481_629252_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_010931354.1|629294_629762_+	ribonuclease HI	NA	J9Q745	Salmonella_phage	50.7	5.6e-36
WP_005013747.1|629758_630709_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003818344.1|632657_633536_-	fatty acid desaturase	NA	NA	NA	NA	NA
WP_019247959.1|634462_637441_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931070.1|637794_638745_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931353.1|638741_639830_-	NAD(P)H-binding protein	NA	NA	NA	NA	NA
WP_010931352.1|639865_640729_-	MaoC family dehydratase N-terminal domain-containing protein	NA	NA	NA	NA	NA
WP_010931351.1|641868_642258_-	OB-fold domain-containing protein	NA	NA	NA	NA	NA
WP_014486103.1|642261_643044_-	crotonase/enoyl-CoA hydratase family protein	NA	NA	NA	NA	NA
WP_047122778.1|643077_643863_-	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010931349.1|644138_645278_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931348.1|645274_646066_+	ATP-binding cassette domain-containing protein	NA	A0A1M7XV31	Cedratvirus	29.4	1.7e-08
WP_010931347.1|646062_646812_+	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	27.8	1.9e-09
WP_010931346.1|646808_647681_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_004566224.1|647680_648682_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003808195.1|648678_649842_+	acyl-CoA dehydrogenase family protein	NA	NA	NA	NA	NA
WP_003808193.1|649867_650551_+	TetR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247312.1|650504_651839_+	AMP-binding protein	NA	NA	NA	NA	NA
WP_010931344.1|651831_652926_+	CoA transferase	NA	NA	NA	NA	NA
WP_010929591.1|653692_654643_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931343.1|656583_657843_+	YeaH/YhbH family protein	NA	NA	NA	NA	NA
WP_003814858.1|657839_659378_+	SpoVR family protein	NA	NA	NA	NA	NA
WP_003814856.1|659374_660571_-	MFS transporter	NA	NA	NA	NA	NA
WP_010931342.1|660567_661944_-	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_003814852.1|661955_662972_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010927102.1|663040_664276_-	methylaspartate ammonia-lyase	NA	NA	NA	NA	NA
WP_010931341.1|664376_665171_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929282.1|665540_665948_+	GFA family protein	NA	NA	NA	NA	NA
WP_010929281.1|666365_666638_-	MerR family DNA-binding transcriptional regulator	NA	NA	NA	NA	NA
WP_124740609.1|666807_667032_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003814832.1|667219_668074_+	urease accessory protein UreD	NA	NA	NA	NA	NA
WP_010931340.1|668174_668477_+	urease subunit gamma	NA	NA	NA	NA	NA
WP_003814828.1|668521_669139_+	HupE/UreJ family protein	NA	NA	NA	NA	NA
WP_010931338.1|669155_669464_+	urease subunit beta	NA	NA	NA	NA	NA
WP_010931337.1|669460_671176_+	urease subunit alpha	NA	NA	NA	NA	NA
WP_014905506.1|671178_671796_+	urease accessory protein UreE	NA	NA	NA	NA	NA
WP_019247677.1|671896_672481_+	urease accessory protein UreF	NA	NA	NA	NA	NA
WP_010931336.1|672505_673150_+	urease accessory protein UreG	NA	NA	NA	NA	NA
WP_023995489.1|673554_674505_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 8
NZ_CP010249	Bordetella pertussis strain H564 chromosome, complete genome	4109554	723443	763392	4109554	tRNA,integrase,transposase,protease	Pseudomonas_phage(33.33%)	27	720691:720709	740579:740597
720691:720709	attL	CTGCCTGGCGTGGCCGAGT	NA	NA	NA	NA
WP_010931308.1|723443_724040_+|tRNA	aminoacyl-tRNA hydrolase	tRNA	NA	NA	NA	NA
WP_010931307.1|724036_724819_+|protease	CPBP family intramembrane metalloprotease	protease	NA	NA	NA	NA
WP_010931306.1|724891_725983_+	redox-regulated ATPase YchF	NA	NA	NA	NA	NA
WP_010931305.1|726262_727390_+|integrase	site-specific integrase	integrase	A0A1B0VMI6	Pseudomonas_phage	33.6	1.4e-48
WP_010931304.1|727731_728778_+	Fic family protein	NA	NA	NA	NA	NA
WP_010931303.1|728925_732045_+	DEAD/DEAH box helicase family protein	NA	NA	NA	NA	NA
WP_010931302.1|732046_734998_+	restriction endonuclease subunit M	NA	G8I4P9	Mycobacterium_phage	25.1	2.9e-21
WP_010931301.1|735013_736225_+	AAA family ATPase	NA	NA	NA	NA	NA
WP_005013747.1|736408_737359_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_077274087.1|737375_737870_+	DUF4276 family protein	NA	NA	NA	NA	NA
WP_019247740.1|737873_738131_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019248455.1|738674_739586_+	UvrD-helicase domain-containing protein	NA	NA	NA	NA	NA
WP_029443992.1|739667_739952_+	ATP-dependent helicase	NA	A0A1V0SIN4	Klosneuvirus	34.1	6.8e-05
WP_005012067.1|740735_741686_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
740579:740597	attR	ACTCGGCCACGCCAGGCAG	NA	NA	NA	NA
WP_019247178.1|742104_744669_-	autotransporter domain-containing protein	NA	NA	NA	NA	NA
WP_019247179.1|744713_746567_-	autotransporter-associated beta strand repeat-containing protein	NA	NA	NA	NA	NA
WP_014905963.1|746899_748471_+	winged helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|749912_750863_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014905961.1|750948_751689_-	TetR family transcriptional regulator	NA	NA	NA	NA	NA
WP_029443749.1|751915_752863_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003814139.1|755393_756209_+	MerR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931299.1|756341_757781_+	FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_003814142.1|757794_758136_+	cupin domain-containing protein	NA	NA	NA	NA	NA
WP_010931298.1|758190_759846_+	gamma-glutamyltransferase family protein	NA	NA	NA	NA	NA
WP_003814146.1|759997_761008_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003814148.1|761140_761914_+	molybdate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_005012067.1|762441_763392_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 9
NZ_CP010249	Bordetella pertussis strain H564 chromosome, complete genome	4109554	773319	820937	4109554	tRNA,holin,transposase,protease	Bovine_alphaherpesvirus(10.0%)	46	NA	NA
WP_005012808.1|773319_774270_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003818450.1|774408_775161_+	uracil-DNA glycosylase	NA	A0A1Y0B680	Bovine_alphaherpesvirus	47.5	2.5e-46
WP_010931273.1|775399_777124_+	DEAD/DEAH box helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	32.9	9.5e-49
WP_004566001.1|777143_778403_+	SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_010931274.1|778417_779512_-|tRNA	CCA tRNA nucleotidyltransferase	tRNA	A0A0F6YPT7	Sinorhizobium_phage	50.5	2.4e-50
WP_023995440.1|779508_781635_-	lytic transglycosylase domain-containing protein	NA	A0A0S2SXL7	Bacillus_phage	36.6	5.5e-14
WP_010931276.1|781647_782328_+	5-formyltetrahydrofolate cyclo-ligase	NA	NA	NA	NA	NA
WP_003807204.1|782605_783979_+	MHS family MFS transporter	NA	NA	NA	NA	NA
WP_003818444.1|783980_785000_+	histone deacetylase family protein	NA	A0A2K9L473	Tupanvirus	31.7	3.4e-22
WP_003818443.1|785063_786035_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005013747.1|786099_787050_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003807199.1|787148_787991_-	methylenetetrahydrofolate reductase [NAD(P)H]	NA	NA	NA	NA	NA
WP_010931277.1|787990_788326_-|holin	phage holin family protein	holin	NA	NA	NA	NA
WP_010931278.1|788396_789815_-	adenosylhomocysteinase	NA	S4VPF6	Pandoravirus	29.4	8.7e-40
WP_003807194.1|790094_791135_-	glycosyltransferase family 1 protein	NA	NA	NA	NA	NA
WP_003818441.1|791214_791466_-	DUF1289 domain-containing protein	NA	NA	NA	NA	NA
WP_010925730.1|791576_792740_-	methionine adenosyltransferase	NA	A0A2H4PQS6	Staphylococcus_phage	60.8	5.0e-126
WP_010931279.1|793023_793878_+	lysophospholipid acyltransferase family protein	NA	NA	NA	NA	NA
WP_010931280.1|793874_794765_+	lysophospholipid acyltransferase family protein	NA	NA	NA	NA	NA
WP_003807183.1|794807_795719_+	diaminopimelate epimerase	NA	NA	NA	NA	NA
WP_010931281.1|795745_796438_+	DUF484 family protein	NA	NA	NA	NA	NA
WP_010931282.1|796452_797433_+	tyrosine recombinase XerC	NA	A0A166YH27	Gordonia_phage	30.5	3.3e-14
WP_010931283.1|797445_799587_-	TonB-dependent receptor	NA	NA	NA	NA	NA
WP_003818434.1|799635_800604_-	putative membrane protein	NA	NA	NA	NA	NA
WP_019247300.1|800594_801263_-	DUF1007 family protein	NA	NA	NA	NA	NA
WP_010931286.1|801223_802159_-	metal ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931287.1|802155_803052_-	metal ABC transporter permease	NA	NA	NA	NA	NA
WP_010931288.1|803048_803771_-	metal ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	30.0	1.1e-11
WP_019248127.1|803761_803926_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003807166.1|804099_804603_+	transcriptional repressor	NA	NA	NA	NA	NA
WP_010931290.1|804879_805995_+	GTP-binding protein	NA	NA	NA	NA	NA
WP_003807164.1|806137_806602_+	RNA polymerase-binding protein DksA	NA	NA	NA	NA	NA
WP_010931291.1|806749_807289_+|protease	ATP-dependent protease subunit HslV	protease	NA	NA	NA	NA
WP_003807162.1|807310_808645_+|protease	ATP-dependent protease ATPase subunit HslU	protease	A0A191ZC11	Erwinia_phage	29.6	3.5e-43
WP_003807161.1|808658_808964_-	copper-binding protein	NA	NA	NA	NA	NA
WP_023853416.1|809388_809970_+	cob(I)yrinic acid a,c-diamide adenosyltransferase	NA	NA	NA	NA	NA
WP_005013747.1|810051_811002_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|811100_812051_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814620.1|812491_813397_-	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_023853019.1|813452_815057_-	gamma-glutamyltransferase family protein	NA	NA	NA	NA	NA
WP_010931270.1|815313_816819_-	tripartite tricarboxylate transporter permease	NA	NA	NA	NA	NA
WP_003820744.1|816833_817298_-	tripartite tricarboxylate transporter TctB family protein	NA	NA	NA	NA	NA
WP_005012067.1|817587_818538_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003820745.1|818700_819231_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003814611.1|819230_819542_+	cell division protein ZapA	NA	NA	NA	NA	NA
WP_005012808.1|819986_820937_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 10
NZ_CP010249	Bordetella pertussis strain H564 chromosome, complete genome	4109554	996796	1099189	4109554	tRNA,transposase	Bacillus_virus(27.27%)	92	NA	NA
WP_003813026.1|996796_997912_+|tRNA	tRNA 2-thiouridine(34) synthase MnmA	tRNA	NA	NA	NA	NA
WP_003813022.1|998012_998831_+	sulfite exporter TauE/SafE family protein	NA	NA	NA	NA	NA
WP_010931185.1|998928_999540_-	glutathione S-transferase	NA	NA	NA	NA	NA
WP_010931184.1|999699_1001076_+	adenylosuccinate lyase	NA	A0A2H4UUU6	Bodo_saltans_virus	47.5	2.2e-109
WP_003813017.1|1001138_1001597_+	cytochrome c	NA	NA	NA	NA	NA
WP_003813013.1|1001681_1002377_-	cytochrome b/b6 domain-containing protein	NA	NA	NA	NA	NA
WP_003813010.1|1002438_1002720_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931182.1|1003282_1004035_+	DUF3053 domain-containing protein	NA	NA	NA	NA	NA
WP_003813006.1|1004079_1005156_+	AI-2E family transporter	NA	NA	NA	NA	NA
WP_005012067.1|1005152_1006103_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014486100.1|1006205_1006868_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019249309.1|1006962_1007133_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247599.1|1007485_1008487_+	amidase	NA	NA	NA	NA	NA
WP_003818702.1|1008489_1009686_+	CoA transferase	NA	NA	NA	NA	NA
WP_014486098.1|1009706_1010510_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_019247598.1|1010590_1010887_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247597.1|1010917_1011481_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_014486097.1|1011521_1012379_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_003818698.1|1012386_1013136_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	33.5	6.2e-29
WP_014486096.1|1013157_1014030_+	polysaccharide deacetylase family protein	NA	NA	NA	NA	NA
WP_014486095.1|1014058_1014838_+	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_014486094.1|1014871_1015669_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003808978.1|1018323_1018716_+	hypothetical protein	NA	NA	NA	NA	NA
WP_014486091.1|1018709_1019570_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003818691.1|1019573_1020536_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_014486089.1|1021312_1022002_+	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	28.8	4.8e-12
WP_010930208.1|1022862_1023813_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931181.1|1024162_1025032_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010926062.1|1025102_1025798_+	ankyrin repeat domain-containing protein	NA	NA	NA	NA	NA
WP_010931179.1|1025787_1026297_+	nucleoside deaminase	NA	NA	NA	NA	NA
WP_010931178.1|1026293_1027514_+	MFS transporter	NA	NA	NA	NA	NA
WP_010931177.1|1027461_1028364_-	transcriptional regulator GcvA	NA	NA	NA	NA	NA
WP_023997744.1|1029250_1030537_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931176.1|1030575_1031949_+	amidase	NA	NA	NA	NA	NA
WP_010931175.1|1031987_1032689_-	riboflavin synthase	NA	NA	NA	NA	NA
WP_010931174.1|1032987_1033977_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003809010.1|1034077_1034539_+	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931173.1|1034554_1035103_-	cysteine dioxygenase family protein	NA	NA	NA	NA	NA
WP_010931172.1|1035244_1036720_-	acyl--CoA ligase	NA	Q75ZG1	Hepacivirus	25.6	3.0e-35
WP_010931171.1|1036825_1037917_+	DUF2817 domain-containing protein	NA	NA	NA	NA	NA
WP_010931170.1|1037920_1038703_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931169.1|1038712_1039501_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	40.0	1.1e-33
WP_010931168.1|1040626_1041061_-	PaaI family thioesterase	NA	NA	NA	NA	NA
WP_010931167.1|1041057_1042068_-	zinc-binding dehydrogenase	NA	NA	NA	NA	NA
WP_003809025.1|1042111_1043038_-	VOC family protein	NA	NA	NA	NA	NA
WP_003809026.1|1043324_1043693_+	DUF861 domain-containing protein	NA	NA	NA	NA	NA
WP_023853143.1|1043909_1044860_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931165.1|1044904_1047331_+	copper-translocating P-type ATPase	NA	A0A218MNH6	uncultured_virus	33.8	1.2e-86
WP_010931164.1|1047379_1048072_+	HD domain-containing protein	NA	A0A1D6Y7U0	Golden_Marseillevirus	29.9	4.7e-07
WP_010931163.1|1048144_1049344_+	aspartate/tyrosine/aromatic aminotransferase	NA	NA	NA	NA	NA
WP_003819549.1|1049361_1050267_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931162.1|1050382_1051312_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_010931161.1|1051337_1052684_+	MFS transporter	NA	NA	NA	NA	NA
WP_010931160.1|1052711_1053461_+	SDR family oxidoreductase	NA	A0A0M4JSW6	Mollivirus	26.4	1.2e-11
WP_010931159.1|1053474_1054257_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_005012067.1|1054449_1055400_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931158.1|1055461_1056571_-	porin	NA	NA	NA	NA	NA
WP_003815281.1|1057083_1057920_-	3-methyl-2-oxobutanoate hydroxymethyltransferase	NA	A0A0P0BXC9	Ostreococcus_lucimarinus_virus	33.3	1.6e-33
WP_023997028.1|1057989_1058955_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|1058951_1059902_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247492.1|1060287_1060830_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|1061865_1062816_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247402.1|1063057_1063426_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019248356.1|1063471_1064596_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931156.1|1065730_1066483_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010931155.1|1066574_1067195_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_023852714.1|1067298_1068249_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931154.1|1068245_1070354_-	AsmA family protein	NA	NA	NA	NA	NA
WP_003820814.1|1070498_1071158_-	DNA-3-methyladenine glycosylase I	NA	NA	NA	NA	NA
WP_003820813.1|1071189_1071654_-	redox-sensitive transcriptional activator SoxR	NA	NA	NA	NA	NA
WP_019248355.1|1071929_1072115_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931153.1|1072166_1072919_-	DNA-binding protein	NA	NA	NA	NA	NA
WP_010931152.1|1072925_1074188_-	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_003820806.1|1076545_1077673_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	32.3	1.2e-23
WP_003814524.1|1077683_1078511_-	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
WP_010931150.1|1078497_1079364_-	sugar ABC transporter permease	NA	NA	NA	NA	NA
WP_010931149.1|1080730_1081135_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012808.1|1081226_1082177_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_033446288.1|1082546_1083458_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_062826655.1|1083472_1084183_+	FadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931147.1|1084179_1085424_+	aconitase X catalytic domain-containing protein	NA	NA	NA	NA	NA
WP_003820797.1|1085425_1085860_+	DUF126 domain-containing protein	NA	NA	NA	NA	NA
WP_003814535.1|1085888_1086194_+	antibiotic biosynthesis monooxygenase	NA	NA	NA	NA	NA
WP_005012067.1|1086292_1087243_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247277.1|1087299_1088454_-	iron-containing alcohol dehydrogenase	NA	NA	NA	NA	NA
WP_010930176.1|1088528_1089479_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931144.1|1090010_1090808_-	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019247918.1|1090855_1091509_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_003814544.1|1091465_1092554_-	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	36.4	8.7e-32
WP_003814547.1|1092718_1094944_-	glycoside hydrolase family 31 protein	NA	NA	NA	NA	NA
WP_023852715.1|1097221_1098118_+	inositol monophosphatase	NA	NA	NA	NA	NA
WP_005012067.1|1098238_1099189_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 11
NZ_CP010249	Bordetella pertussis strain H564 chromosome, complete genome	4109554	1129575	1200546	4109554	transposase,protease	uncultured_Mediterranean_phage(25.0%)	52	NA	NA
WP_005012808.1|1129575_1130526_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931130.1|1130582_1131695_+	Ldh family oxidoreductase	NA	NA	NA	NA	NA
WP_005012067.1|1134078_1135029_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931129.1|1135619_1136396_+	2-dehydro-3-deoxyglucarate aldolase	NA	NA	NA	NA	NA
WP_003812908.1|1136513_1136777_-	30S ribosomal protein S20	NA	NA	NA	NA	NA
WP_010931128.1|1136877_1137882_-	FecR domain-containing protein	NA	NA	NA	NA	NA
WP_010931127.1|1138082_1139684_-	murein biosynthesis integral membrane protein MurJ	NA	NA	NA	NA	NA
WP_010931126.1|1139709_1140468_-	3-hydroxyacyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_010931125.1|1140559_1141216_-	adenylate kinase	NA	NA	NA	NA	NA
WP_010931124.1|1141306_1142071_-	3-deoxy-manno-octulosonate cytidylyltransferase	NA	NA	NA	NA	NA
WP_003812895.1|1142080_1142269_-	Trm112 family protein	NA	NA	NA	NA	NA
WP_010931123.1|1142324_1143368_-	tetraacyldisaccharide 4'-kinase	NA	NA	NA	NA	NA
WP_010931122.1|1143364_1143778_-	biopolymer transporter ExbD	NA	NA	NA	NA	NA
WP_003812889.1|1143774_1144395_-	MotA/TolQ/ExbB proton channel family protein	NA	NA	NA	NA	NA
WP_005012067.1|1144675_1145626_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931120.1|1145793_1147185_+	exodeoxyribonuclease VII large subunit	NA	A0A1V0SD82	Indivirus	32.0	1.4e-29
WP_010931119.1|1147257_1147836_+	superoxide dismutase [Fe]	NA	NA	NA	NA	NA
WP_019247560.1|1147952_1149350_+	chloride channel protein	NA	NA	NA	NA	NA
WP_010931117.1|1149465_1150671_+	3-oxoadipyl-CoA thiolase	NA	NA	NA	NA	NA
WP_003820399.1|1150770_1151289_-	DUF192 domain-containing protein	NA	A0A1B1IUW8	uncultured_Mediterranean_phage	42.2	5.1e-14
WP_003812875.1|1151383_1151629_-	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	76.6	1.3e-20
WP_003820400.1|1151856_1152171_+|protease	ATP-dependent Clp protease adapter ClpS	protease	A0A1B1IT64	uncultured_Mediterranean_phage	43.8	1.2e-10
WP_010931116.1|1152260_1157450_+	alpha-2-macroglobulin family protein	NA	NA	NA	NA	NA
WP_010931115.1|1157446_1159615_+	penicillin-binding protein 1C	NA	NA	NA	NA	NA
WP_010931114.1|1159670_1161986_+|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	protease	A0A223W0B1	Agrobacterium_phage	41.9	4.1e-164
WP_003820402.1|1161990_1163310_+	PqiA/YebS family transporter subunit	NA	NA	NA	NA	NA
WP_014905522.1|1163328_1165002_+	MCE family protein	NA	NA	NA	NA	NA
WP_010931111.1|1165006_1165675_+	membrane integrity-associated transporter subunit PqiC	NA	NA	NA	NA	NA
WP_010931110.1|1165831_1169653_+	trifunctional transcriptional regulator/proline dehydrogenase/L-glutamate gamma-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
WP_010930800.1|1169983_1170934_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812857.1|1170955_1172101_+	branched-chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003820410.1|1172249_1173179_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003812851.1|1173175_1174264_+	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
WP_010931109.1|1174260_1175064_+	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	23.5	7.9e-14
WP_003812846.1|1175060_1175792_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	31.0	1.4e-12
WP_010931108.1|1175849_1177139_-	MFS transporter	NA	NA	NA	NA	NA
WP_010931107.1|1177235_1177838_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003812839.1|1182391_1182730_-	P-II family nitrogen regulator	NA	NA	NA	NA	NA
WP_010931105.1|1183437_1183704_+	accessory factor UbiK family protein	NA	NA	NA	NA	NA
WP_005012067.1|1185410_1186361_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931103.1|1186357_1187689_-	MFS transporter	NA	NA	NA	NA	NA
WP_010931102.1|1188949_1190950_+	cytochrome o ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
WP_003819722.1|1190942_1191584_+	cytochrome o ubiquinol oxidase subunit III	NA	NA	NA	NA	NA
WP_003809276.1|1191580_1191988_+	cytochrome o ubiquinol oxidase subunit IV	NA	NA	NA	NA	NA
WP_010931101.1|1191984_1192785_+	SURF1 family protein	NA	NA	NA	NA	NA
WP_010931100.1|1192859_1193564_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010931099.1|1193595_1194390_+	N-formylglutamate deformylase	NA	NA	NA	NA	NA
WP_005013747.1|1194386_1195337_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023995489.1|1195435_1196386_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812014.1|1196484_1196919_-	Cd(II)/Pb(II)-responsive transcriptional regulator	NA	NA	NA	NA	NA
WP_010931098.1|1197001_1199338_+	heavy metal translocating P-type ATPase	NA	E4ZFI9	Streptococcus_phage	42.8	3.2e-124
WP_010930525.1|1199529_1200546_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
>prophage 12
NZ_CP010249	Bordetella pertussis strain H564 chromosome, complete genome	4109554	1241617	1323752	4109554	tRNA,transposase	Bacillus_virus(25.0%)	60	NA	NA
WP_010929591.1|1241617_1242568_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931074.1|1242655_1244308_+	phenylacetic acid degradation protein PaaN	NA	NA	NA	NA	NA
WP_010931073.1|1244318_1245107_+	2-(1,2-epoxy-1,2-dihydrophenyl)acetyl-CoA isomerase	NA	NA	NA	NA	NA
WP_003813284.1|1245106_1245577_+	hydroxyphenylacetyl-CoA thioesterase PaaI	NA	NA	NA	NA	NA
WP_010931072.1|1245651_1246965_+	phenylacetate--CoA ligase	NA	NA	NA	NA	NA
WP_010931071.1|1247018_1247624_-	fimbrial major subunit FimX	NA	NA	NA	NA	NA
WP_010927744.1|1247850_1248801_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929591.1|1248887_1249838_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931069.1|1250098_1251127_-	DctP family TRAP transporter solute-binding subunit	NA	NA	NA	NA	NA
WP_010931068.1|1251206_1252505_-	TRAP transporter large permease	NA	NA	NA	NA	NA
WP_003816847.1|1252501_1253083_-	TRAP transporter small permease	NA	NA	NA	NA	NA
WP_010931067.1|1253395_1257442_+	phosphoribosylformylglycinamidine synthase	NA	A9YX36	Burkholderia_phage	67.4	6.3e-160
WP_010931066.1|1257682_1265344_+	hemagglutinin repeat-containing protein	NA	A0A0R6PJK4	Moraxella_phage	30.9	7.3e-24
WP_005012067.1|1265340_1266291_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931065.1|1267430_1267904_-	MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931064.1|1268043_1268664_-	cupin domain-containing protein	NA	NA	NA	NA	NA
WP_010931063.1|1268799_1269600_+	aldolase	NA	NA	NA	NA	NA
WP_003810897.1|1269654_1270746_+	TRAP transporter substrate-binding protein DctP	NA	NA	NA	NA	NA
WP_010931062.1|1270767_1271211_-	6-carboxytetrahydropterin synthase QueD	NA	NA	NA	NA	NA
WP_010931061.1|1271239_1271872_-	7-carboxy-7-deazaguanine synthase	NA	NA	NA	NA	NA
WP_003810909.1|1271982_1272399_+|tRNA	aminoacyl-tRNA hydrolase	tRNA	NA	NA	NA	NA
WP_010931060.1|1272391_1273084_+	DUF2238 domain-containing protein	NA	NA	NA	NA	NA
WP_010931059.1|1273190_1273565_+	MAPEG family protein	NA	NA	NA	NA	NA
WP_010931058.1|1273641_1274451_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931057.1|1274546_1275491_+	dihydrodipicolinate synthase family protein	NA	NA	NA	NA	NA
WP_003816577.1|1275529_1276501_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003810921.1|1276591_1277029_-	carboxypeptidase regulatory-like domain-containing protein	NA	NA	NA	NA	NA
WP_029443733.1|1277087_1277969_-	NRDE family protein	NA	NA	NA	NA	NA
WP_010931054.1|1278972_1279833_+	amidohydrolase	NA	NA	NA	NA	NA
WP_010931053.1|1279865_1281248_+	FAD-dependent oxidoreductase	NA	A0A2P0ZL82	Lactobacillus_phage	28.4	7.9e-30
WP_010931052.1|1281244_1282264_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019247407.1|1282636_1283131_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010931051.1|1283138_1283879_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931050.1|1283959_1285564_-	glycerol-3-phosphate dehydrogenase/oxidase	NA	NA	NA	NA	NA
WP_010931049.1|1285603_1286392_-	DeoR family transcriptional regulator	NA	A0A077SK06	Escherichia_phage	30.4	2.0e-22
WP_010931048.1|1287594_1288683_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	28.1	9.7e-15
WP_010931047.1|1289563_1290376_+	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
WP_004568502.1|1290388_1290697_+	DUF2160 domain-containing protein	NA	NA	NA	NA	NA
WP_010931046.1|1290814_1292545_+	carbohydrate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019249399.1|1292546_1293692_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003810957.1|1294610_1295078_-	winged helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_019247521.1|1295213_1296596_+	D-amino acid dehydrogenase	NA	NA	NA	NA	NA
WP_014486086.1|1296592_1297717_+	DNA repair exonuclease	NA	NA	NA	NA	NA
WP_010931042.1|1297713_1300350_+	AAA family ATPase	NA	NA	NA	NA	NA
WP_077074155.1|1300765_1301716_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931041.1|1305462_1306074_-	DUF2239 family protein	NA	NA	NA	NA	NA
WP_003812368.1|1306296_1307757_+	IMP dehydrogenase	NA	A0A1V0SHK8	Klosneuvirus	41.3	1.6e-97
WP_010931040.1|1307853_1309446_+	glutamine-hydrolyzing GMP synthase	NA	A0A1V0SH76	Hokovirus	33.3	1.0e-17
WP_019247974.1|1309799_1310057_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003816876.1|1310058_1311399_+	type II toxin-antitoxin system HipA family toxin	NA	NA	NA	NA	NA
WP_010931038.1|1311494_1312184_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247976.1|1312196_1313627_+	MFS transporter	NA	NA	NA	NA	NA
WP_014905903.1|1315351_1316173_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931036.1|1316183_1317755_+	amidohydrolase	NA	NA	NA	NA	NA
WP_010931035.1|1317783_1318761_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931034.1|1318787_1319591_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	38.2	2.7e-30
WP_010931033.1|1319587_1320382_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_003816890.1|1320389_1321625_+	DUF521 domain-containing protein	NA	NA	NA	NA	NA
WP_010931032.1|1321617_1322052_+	DUF126 domain-containing protein	NA	NA	NA	NA	NA
WP_005013747.1|1322801_1323752_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 13
NZ_CP010249	Bordetella pertussis strain H564 chromosome, complete genome	4109554	1327863	1368532	4109554	tRNA,transposase	Salmonella_phage(33.33%)	42	NA	NA
WP_005013747.1|1327863_1328814_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931029.1|1328854_1329925_+	FUSC family protein	NA	NA	NA	NA	NA
WP_010931028.1|1329947_1330826_-	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
WP_010931027.1|1330997_1331969_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010931026.1|1332131_1332974_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931025.1|1333135_1333816_+	cupin domain-containing protein	NA	NA	NA	NA	NA
WP_010931024.1|1333809_1334979_+	FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010931023.1|1334975_1336007_+	alcohol dehydrogenase catalytic domain-containing protein	NA	A0A2K9L339	Tupanvirus	27.8	1.8e-26
WP_010931022.1|1336050_1337292_+	MFS transporter	NA	NA	NA	NA	NA
WP_010931021.1|1337326_1338859_-	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
WP_010931020.1|1338939_1339563_+	FMN-binding negative transcriptional regulator	NA	NA	NA	NA	NA
WP_010931019.1|1339593_1340205_+	LysE family translocator	NA	NA	NA	NA	NA
WP_010931018.1|1340240_1340711_+	DUF1801 domain-containing protein	NA	NA	NA	NA	NA
WP_019248147.1|1341142_1342147_+	M20/M25/M40 family metallo-hydrolase	NA	NA	NA	NA	NA
WP_010931017.1|1342183_1343698_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931016.1|1343701_1344661_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931015.1|1344689_1345493_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931014.1|1345494_1347129_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	31.1	2.9e-15
WP_010931013.1|1347212_1348274_+	LacI family DNA-binding transcriptional regulator	NA	NA	NA	NA	NA
WP_004567322.1|1348472_1348742_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931012.1|1348745_1349270_+	DNA-binding protein	NA	J9Q7G7	Salmonella_phage	32.9	6.5e-09
WP_010929591.1|1349685_1350636_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931011.1|1350632_1351667_-	metal-dependent hydrolase	NA	NA	NA	NA	NA
WP_003816758.1|1351775_1352414_+	DedA family protein	NA	NA	NA	NA	NA
WP_019247724.1|1352708_1352936_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_003820420.1|1353058_1353772_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_010931070.1|1354016_1354967_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931009.1|1355070_1355352_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931008.1|1355466_1356915_-	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
WP_005012808.1|1357025_1357976_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003816756.1|1357972_1358422_-	dUTP diphosphatase	NA	S4TNT3	Salmonella_phage	67.2	3.7e-45
WP_010929584.1|1358616_1359567_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812834.1|1359902_1360100_+	50S ribosomal protein L35	NA	NA	NA	NA	NA
WP_003812832.1|1360115_1360475_+	50S ribosomal protein L20	NA	NA	NA	NA	NA
WP_010926359.1|1360549_1361572_+|tRNA	phenylalanine--tRNA ligase subunit alpha	tRNA	A0A2H4UW22	Bodo_saltans_virus	38.6	1.0e-26
WP_010931007.1|1361584_1364002_+|tRNA	phenylalanine--tRNA ligase subunit beta	tRNA	NA	NA	NA	NA
WP_010931006.1|1364007_1364349_+	integration host factor subunit alpha	NA	A0A0H3UZA0	Geobacillus_virus	42.2	2.8e-13
WP_003812822.1|1364407_1364818_+	MerR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931005.1|1365317_1366409_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931004.1|1366592_1367189_+	lipoprotein	NA	NA	NA	NA	NA
WP_004567479.1|1367288_1367471_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929591.1|1367581_1368532_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 14
NZ_CP010249	Bordetella pertussis strain H564 chromosome, complete genome	4109554	1448209	1500363	4109554	tRNA,transposase	Salmonella_phage(25.0%)	45	NA	NA
WP_005013747.1|1448209_1449160_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814065.1|1449326_1449680_+	cytochrome c	NA	NA	NA	NA	NA
WP_003814063.1|1449692_1450055_+	cytochrome c	NA	NA	NA	NA	NA
WP_003814061.1|1450096_1450522_-	DUF1841 family protein	NA	NA	NA	NA	NA
WP_003814059.1|1450724_1451981_+	NADP-dependent isocitrate dehydrogenase	NA	Q77Z09	Phage_21	64.8	1.2e-11
WP_003814057.1|1452179_1453160_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005015028.1|1453309_1454551_+	O-antigen ligase family protein	NA	NA	NA	NA	NA
WP_005013747.1|1454649_1455600_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814052.1|1455608_1456304_-	two-component system response regulator KdpE	NA	NA	NA	NA	NA
WP_003814050.1|1459125_1459725_-	potassium-transporting ATPase subunit KdpC	NA	NA	NA	NA	NA
WP_010930950.1|1459735_1461901_-	potassium-transporting ATPase subunit KdpB	NA	M1HBF8	Paramecium_bursaria_Chlorella_virus	27.1	1.2e-24
WP_010930949.1|1461924_1463709_-	potassium-transporting ATPase subunit KdpA	NA	NA	NA	NA	NA
WP_017685545.1|1463708_1463798_-	K(+)-transporting ATPase subunit F	NA	NA	NA	NA	NA
WP_003814042.1|1464492_1464765_+	DUF4212 domain-containing protein	NA	NA	NA	NA	NA
WP_003814040.1|1464764_1466831_+	cation acetate symporter	NA	NA	NA	NA	NA
WP_010929577.1|1466827_1467778_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|1467877_1468828_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005015014.1|1468943_1469276_-	multidrug transporter	NA	NA	NA	NA	NA
WP_010929073.1|1469272_1469959_-	Smr/MutS family protein	NA	NA	NA	NA	NA
WP_010930948.1|1469945_1470905_-	thioredoxin-disulfide reductase	NA	A0A2I2L5E1	Orpheovirus	40.2	3.1e-57
WP_003814032.1|1470946_1473307_+	DNA translocase FtsK	NA	S5VNE3	Mycobacterium_phage	48.0	7.6e-81
WP_010930946.1|1473306_1473939_+	outer membrane lipoprotein chaperone LolA	NA	NA	NA	NA	NA
WP_010930945.1|1474040_1475381_+	replication-associated recombination protein A	NA	G3MBE0	Bacillus_virus	38.9	1.6e-75
WP_010930944.1|1475427_1476783_+|tRNA	serine--tRNA ligase	tRNA	A0A1B1IVT2	uncultured_Mediterranean_phage	47.5	1.6e-83
WP_170954289.1|1476908_1477553_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003814024.1|1477497_1477815_-	virulence factor	NA	NA	NA	NA	NA
WP_003814023.1|1478087_1478603_-	hypothetical protein	NA	T1SAR8	Salmonella_phage	44.6	5.1e-06
WP_003814022.1|1478696_1478858_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003814021.1|1478873_1479629_-	GGDEF domain-containing protein	NA	NA	NA	NA	NA
WP_019247690.1|1479967_1480174_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003814020.1|1480181_1480841_-	NAAT family transporter	NA	NA	NA	NA	NA
WP_010930941.1|1481135_1483340_-	TonB-dependent alcaligin siderophore receptor FauA	NA	NA	NA	NA	NA
WP_010930940.1|1483450_1484674_-	alcaligin siderophore export MFS transporter Bcr	NA	S4TR35	Salmonella_phage	29.4	9.8e-24
WP_003814017.1|1484796_1485771_-	alcaligin siderophore biosynthesis transcriptional regulator AlcR	NA	NA	NA	NA	NA
WP_005013753.1|1485838_1487032_-	alcaligin siderophore biosynthesis protein AlcE	NA	NA	NA	NA	NA
WP_003814016.1|1487046_1487847_-	alcaligin siderophore biosynthesis protein AlcD	NA	NA	NA	NA	NA
WP_010930939.1|1487843_1489700_-	alcaligin siderophore biosynthesis protein AlcC	NA	NA	NA	NA	NA
WP_003814014.1|1489696_1490302_-	alcaligin siderophore biosynthesis protein AlcB	NA	NA	NA	NA	NA
WP_003814013.1|1490320_1491706_-	alcaligin siderophore biosynthesis protein AlcA	NA	NA	NA	NA	NA
WP_003814012.1|1492431_1493658_+	cation:proton antiporter	NA	NA	NA	NA	NA
WP_003814011.1|1493746_1494529_+	3-hydroxybutyrate dehydrogenase	NA	NA	NA	NA	NA
WP_005012067.1|1494627_1495578_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814010.1|1495604_1496378_+	peroxide stress protein YaaA	NA	NA	NA	NA	NA
WP_003814009.1|1496389_1497631_+	MFS transporter	NA	NA	NA	NA	NA
WP_005012067.1|1499412_1500363_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 15
NZ_CP010249	Bordetella pertussis strain H564 chromosome, complete genome	4109554	1544288	1604201	4109554	tRNA,transposase	Streptococcus_virus(12.5%)	52	NA	NA
WP_010930416.1|1544288_1544777_+|tRNA	Cys-tRNA(Pro) deacylase	tRNA	NA	NA	NA	NA
WP_019248504.1|1544894_1545473_+	DJ-1/PfpI family protein	NA	NA	NA	NA	NA
WP_010930418.1|1545578_1545947_+	ribbon-helix-helix domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|1546045_1546996_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994932.1|1547002_1548115_-	D-alanyl-D-alanine endopeptidase	NA	NA	NA	NA	NA
WP_010930419.1|1548801_1550004_+	MFS transporter	NA	NA	NA	NA	NA
WP_004568212.1|1550039_1550186_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930420.1|1550207_1552868_+	PD-(D/E)XK nuclease family protein	NA	NA	NA	NA	NA
WP_010930421.1|1552880_1556285_+	UvrD-helicase domain-containing protein	NA	NA	NA	NA	NA
WP_023995689.1|1556952_1559178_+	DNA polymerase III subunit gamma/tau	NA	A0A1U9WR94	Streptococcus_virus	38.5	1.2e-43
WP_010930423.1|1559224_1559551_+	YbaB/EbfC family nucleoid-associated protein	NA	NA	NA	NA	NA
WP_010930424.1|1559601_1560210_+	recombination protein RecR	NA	NA	NA	NA	NA
WP_005012067.1|1560308_1561259_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010928449.1|1561255_1561882_-	threonylcarbamoyl-AMP synthase	NA	NA	NA	NA	NA
WP_010930427.1|1561941_1562793_+	neutral zinc metallopeptidase	NA	A0A1I9SA48	Rhodococcus_phage	35.3	7.0e-37
WP_010930426.1|1562896_1563496_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930425.1|1563492_1564257_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|1564326_1565277_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|1565375_1566326_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019249265.1|1566424_1567537_-	DUF1513 domain-containing protein	NA	NA	NA	NA	NA
WP_019248041.1|1567526_1568528_-	imelysin family protein	NA	NA	NA	NA	NA
WP_019247498.1|1568633_1570145_-	c-type cytochrome	NA	NA	NA	NA	NA
WP_023853587.1|1570141_1571446_-	imelysin	NA	NA	NA	NA	NA
WP_010930431.1|1571557_1572118_-	membrane protein	NA	NA	NA	NA	NA
WP_010930432.1|1572385_1572940_+	NAD(P)H-dependent oxidoreductase	NA	A0A2P0ZL82	Lactobacillus_phage	32.0	1.7e-15
WP_010930433.1|1573395_1573611_-	dodecin domain-containing protein	NA	NA	NA	NA	NA
WP_033446228.1|1573865_1576463_+	DNA mismatch repair protein MutS	NA	A0A1V0SDQ0	Indivirus	22.6	1.5e-21
WP_010930435.1|1576459_1577647_+	cupin domain-containing protein	NA	NA	NA	NA	NA
WP_019248658.1|1578306_1578921_+	fimbrial protein	NA	NA	NA	NA	NA
WP_010930437.1|1579009_1580137_-	outer membrane protein assembly factor BamC	NA	NA	NA	NA	NA
WP_033446216.1|1580148_1581054_-	4-hydroxy-tetrahydrodipicolinate synthase	NA	NA	NA	NA	NA
WP_005012067.1|1581946_1582897_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930439.1|1583078_1583831_+	glutamine ABC transporter substrate-binding protein GlnH	NA	NA	NA	NA	NA
WP_003811112.1|1583899_1584559_+	glutamine ABC transporter permease GlnP	NA	NA	NA	NA	NA
WP_003811113.1|1584555_1585284_+	glutamine ABC transporter ATP-binding protein GlnQ	NA	G9BWD6	Planktothrix_phage	39.3	3.3e-35
WP_010930440.1|1585296_1587576_-	bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase	NA	A0A1B1IUF0	uncultured_Mediterranean_phage	32.1	5.9e-06
WP_010930441.1|1587600_1587804_-	DNA-directed RNA polymerase subunit omega	NA	NA	NA	NA	NA
WP_010930442.1|1587845_1588478_-	guanylate kinase	NA	A0A218KC48	Bacillus_phage	33.9	2.4e-13
WP_010930443.1|1588613_1589531_-	c-type cytochrome	NA	NA	NA	NA	NA
WP_010930444.1|1589527_1590241_-	c-type cytochrome	NA	NA	NA	NA	NA
WP_003811135.1|1590478_1591249_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_003811137.1|1591253_1591853_-	C40 family peptidase	NA	A0A0A8WF62	Clostridium_phage	41.6	1.4e-20
WP_003811138.1|1592097_1593588_+	AMP nucleosidase	NA	NA	NA	NA	NA
WP_010926696.1|1593646_1593931_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010930445.1|1594068_1594224_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003811148.1|1594496_1595423_-	YicC family protein	NA	NA	NA	NA	NA
WP_003811149.1|1595559_1596300_+	ribonuclease PH	NA	NA	NA	NA	NA
WP_010930446.1|1596466_1597843_-	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_003811152.1|1598024_1598930_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930448.1|1600581_1602384_-	EAL domain-containing protein	NA	NA	NA	NA	NA
WP_010930449.1|1602510_1603152_+	RdgB/HAM1 family non-canonical purine NTP pyrophosphatase	NA	NA	NA	NA	NA
WP_005012808.1|1603250_1604201_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 16
NZ_CP010249	Bordetella pertussis strain H564 chromosome, complete genome	4109554	1649373	1704964	4109554	transposase	Brazilian_cedratvirus(25.0%)	47	NA	NA
WP_005013747.1|1649373_1650324_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930486.1|1650382_1651156_+	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_014486074.1|1651148_1652705_+	LTA synthase family protein	NA	NA	NA	NA	NA
WP_005013747.1|1652701_1653652_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003810741.1|1654978_1655581_-	TetR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003810743.1|1655820_1656522_-	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
WP_003816696.1|1656515_1657298_-	ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	25.8	2.0e-09
WP_005012808.1|1657482_1658433_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930483.1|1658531_1659269_-	TerC family protein	NA	A0A0S4KZH7	Pseudomonas_phage	46.6	4.1e-41
WP_010926609.1|1659458_1660217_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930482.1|1660263_1661253_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930481.1|1661430_1662399_-	transporter	NA	NA	NA	NA	NA
WP_010930480.1|1663938_1664907_+	AAA family ATPase	NA	NA	NA	NA	NA
WP_010930479.1|1664915_1665857_+	DUF58 domain-containing protein	NA	NA	NA	NA	NA
WP_010930478.1|1666330_1667341_+	VWA domain-containing protein	NA	NA	NA	NA	NA
WP_010930477.1|1667331_1668846_+	VWA domain-containing protein	NA	NA	NA	NA	NA
WP_010930476.1|1668842_1670189_+	BatD family protein	NA	NA	NA	NA	NA
WP_010930475.1|1670191_1671226_+	haloacid dehalogenase-like hydrolase	NA	NA	NA	NA	NA
WP_023852967.1|1671275_1672901_+	arylsulfatase	NA	A0A2P0VMN7	Tetraselmis_virus	52.2	2.0e-149
WP_005012067.1|1673453_1674404_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930487.1|1674508_1675456_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247865.1|1675509_1677324_-	sensor histidine kinase	NA	NA	NA	NA	NA
WP_010930489.1|1677316_1677991_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_023995112.1|1678120_1681195_+	autotransporter SphB2	NA	NA	NA	NA	NA
WP_019247905.1|1681208_1681508_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010930492.1|1681822_1682446_-	glutathione S-transferase family protein	NA	NA	NA	NA	NA
WP_010930493.1|1682689_1683559_+	TauD/TfdA family dioxygenase	NA	NA	NA	NA	NA
WP_010930494.1|1683536_1684481_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247909.1|1684566_1685493_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019247910.1|1685605_1686385_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930497.1|1686375_1687572_-	alpha-hydroxy-acid oxidizing protein	NA	NA	NA	NA	NA
WP_010930498.1|1687602_1688553_-	fumarylacetoacetate hydrolase family protein	NA	NA	NA	NA	NA
WP_010930499.1|1688774_1689464_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930500.1|1689528_1690284_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930501.1|1690335_1691328_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930502.1|1691337_1692291_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811538.1|1692406_1693369_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019249376.1|1694770_1695199_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|1695195_1696146_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_170954298.1|1696439_1697177_-	arsenical resistance protein ArsH	NA	A0A2H4J5V6	uncultured_Caudovirales_phage	68.2	1.3e-87
WP_010930504.1|1697600_1698788_-	MFS transporter	NA	NA	NA	NA	NA
WP_019249653.1|1698791_1699172_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010930506.1|1700891_1701863_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930507.1|1701876_1702590_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930508.1|1702594_1703512_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811452.1|1703618_1703915_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929588.1|1704013_1704964_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 17
NZ_CP010249	Bordetella pertussis strain H564 chromosome, complete genome	4109554	1937728	2007380	4109554	tRNA,transposase	Staphylococcus_phage(16.67%)	55	NA	NA
WP_003818515.1|1937728_1940386_-|tRNA	leucine--tRNA ligase	tRNA	A0A2H4PQS0	Staphylococcus_phage	39.0	3.3e-173
WP_010930709.1|1940463_1941666_-	MFS transporter	NA	NA	NA	NA	NA
WP_003810260.1|1941662_1942175_-	MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247822.1|1942297_1942735_-	HU family DNA-binding protein	NA	NA	NA	NA	NA
WP_010931070.1|1943011_1943962_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_062826579.1|1944060_1945011_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930710.1|1945264_1947070_+	STAS domain-containing protein	NA	A0A2H4J153	uncultured_Caudovirales_phage	27.5	2.2e-19
WP_010930711.1|1947183_1947351_-	50S ribosomal protein L33	NA	NA	NA	NA	NA
WP_003810297.1|1947414_1947651_-	50S ribosomal protein L28	NA	NA	NA	NA	NA
WP_010930712.1|1948019_1949219_-	multidrug effflux MFS transporter	NA	NA	NA	NA	NA
WP_010929591.1|1950734_1951685_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003818523.1|1952136_1953138_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003810306.1|1953310_1954168_+	proline/glycine betaine ABC transporter permease	NA	NA	NA	NA	NA
WP_003810308.1|1954164_1955427_+	glycine betaine/L-proline ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	36.6	6.8e-28
WP_003818524.1|1955527_1955902_+	tautomerase family protein	NA	NA	NA	NA	NA
WP_010930713.1|1955974_1957162_+	acetyl-CoA C-acyltransferase family protein	NA	NA	NA	NA	NA
WP_010930714.1|1957246_1958017_+	spermidine synthase	NA	NA	NA	NA	NA
WP_010930715.1|1958130_1958895_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930716.1|1958845_1960147_+	malonyl-CoA decarboxylase family protein	NA	NA	NA	NA	NA
WP_010930717.1|1960143_1960950_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003818532.1|1962694_1963666_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003818533.1|1963822_1964335_+	superoxide dismutase family protein	NA	Q9MC02	Salmonella_phage	52.3	1.8e-43
WP_010930718.1|1964493_1965468_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930719.1|1966468_1967263_+	ABC transporter ATP-binding protein	NA	A0A1V0SE00	Indivirus	25.7	5.1e-05
WP_003818535.1|1967288_1968095_-	TOBE domain-containing protein	NA	NA	NA	NA	NA
WP_003810329.1|1968205_1968796_+	DUF4136 domain-containing protein	NA	NA	NA	NA	NA
WP_010930720.1|1968806_1969985_+	patatin-like phospholipase family protein	NA	NA	NA	NA	NA
WP_010930721.1|1970087_1970462_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_019248531.1|1970714_1972046_+	efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
WP_019247651.1|1972112_1975343_+	multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_003810344.1|1976833_1977580_+	pyridoxine 5'-phosphate synthase	NA	NA	NA	NA	NA
WP_010930724.1|1977664_1978126_+	holo-ACP synthase	NA	NA	NA	NA	NA
WP_010930725.1|1978163_1979222_+	beta-N-acetylhexosaminidase	NA	NA	NA	NA	NA
WP_010930726.1|1979184_1981014_+	excinuclease ABC subunit UvrC	NA	NA	NA	NA	NA
WP_003810356.1|1981053_1981626_+	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	NA	NA	NA	NA	NA
WP_010930727.1|1983050_1983872_-	NADPH-dependent 7-cyano-7-deazaguanine reductase QueF	NA	A0A2I7SAX1	Vibrio_phage	37.6	4.1e-42
WP_010930728.1|1984190_1985513_+	isocitrate lyase	NA	NA	NA	NA	NA
WP_010930729.1|1985872_1986508_+	membrane protein	NA	NA	NA	NA	NA
WP_010930730.1|1986467_1987418_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930731.1|1988288_1989161_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010930732.1|1989238_1990378_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930733.1|1990736_1991993_+	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA	NA
WP_003816691.1|1991998_1992526_+	aromatic-ring-hydroxylating dioxygenase subunit beta	NA	NA	NA	NA	NA
WP_003816690.1|1992530_1993349_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003816687.1|1993348_1994071_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930735.1|1994092_1994407_+	2Fe-2S iron-sulfur cluster binding domain-containing protein	NA	NA	NA	NA	NA
WP_010930736.1|1994424_1995573_+	CoA transferase	NA	NA	NA	NA	NA
WP_010930737.1|1995603_1996479_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003816680.1|1996475_1997795_-	AMP-binding protein	NA	NA	NA	NA	NA
WP_014486081.1|1997867_1999064_-	acetyl-CoA acetyltransferase	NA	NA	NA	NA	NA
WP_010930739.1|1999074_2000562_-	hydroxymethylglutaryl-CoA synthase family protein	NA	NA	NA	NA	NA
WP_010930740.1|2003156_2004056_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_023852887.1|2004193_2005159_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_005015810.1|2005257_2006208_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|2006429_2007380_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 18
NZ_CP010249	Bordetella pertussis strain H564 chromosome, complete genome	4109554	2018876	2067233	4109554	transposase	Erysipelothrix_phage(16.67%)	45	NA	NA
WP_005013747.1|2018876_2019827_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812172.1|2019925_2020222_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247707.1|2020396_2021749_+	glutathione-disulfide reductase	NA	A0A2K5B2C5	Erysipelothrix_phage	27.6	2.9e-45
WP_010930153.1|2021891_2022908_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010930748.1|2024887_2025901_-	pyridoxamine 5'-phosphate oxidase family protein	NA	NA	NA	NA	NA
WP_010930749.1|2025987_2026893_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003812179.1|2027049_2027394_+	exported protein	NA	NA	NA	NA	NA
WP_010930750.1|2027551_2028010_+	(2Fe-2S)-binding protein	NA	NA	NA	NA	NA
WP_010930751.1|2028023_2030240_+	xanthine dehydrogenase family protein molybdopterin-binding subunit	NA	NA	NA	NA	NA
WP_003812183.1|2030236_2031298_+	XdhC family protein	NA	NA	NA	NA	NA
WP_010930752.1|2031326_2032301_+	AraC family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930753.1|2032252_2033071_-	hypothetical protein	NA	A0A1B1INV8	uncultured_Mediterranean_phage	28.8	2.3e-16
WP_003812191.1|2033083_2033692_-	LON peptidase substrate-binding domain-containing protein	NA	NA	NA	NA	NA
WP_010930754.1|2033866_2034262_+	VOC family protein	NA	NA	NA	NA	NA
WP_010930755.1|2034280_2035720_+	MFS transporter	NA	A0A0M3UL24	Mycobacterium_phage	37.4	7.4e-55
WP_003812199.1|2035748_2036096_+	GFA family protein	NA	NA	NA	NA	NA
WP_010929577.1|2036114_2037065_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|2037717_2038668_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023997035.1|2038751_2040569_+	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	27.4	2.3e-37
WP_019247659.1|2040642_2041290_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930758.1|2041302_2042232_-	ZIP family metal transporter	NA	NA	NA	NA	NA
WP_014905663.1|2042401_2042866_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003816977.1|2043113_2043794_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003816975.1|2043842_2045534_+	STAS domain-containing protein	NA	A0A2H4J153	uncultured_Caudovirales_phage	27.3	5.0e-42
WP_010930760.1|2045549_2046101_-	SRPBCC family protein	NA	NA	NA	NA	NA
WP_003816971.1|2046097_2046469_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010930761.1|2046581_2047418_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_029443822.1|2047428_2047953_-	DUF302 domain-containing protein	NA	NA	NA	NA	NA
WP_003812228.1|2048050_2048230_+	DUF3008 family protein	NA	NA	NA	NA	NA
WP_010930763.1|2048359_2049334_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003816964.1|2049464_2049821_+	DUF1428 domain-containing protein	NA	NA	NA	NA	NA
WP_010930764.1|2049810_2050686_-	PhzF family phenazine biosynthesis protein	NA	NA	NA	NA	NA
WP_010930765.1|2050784_2051669_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930766.1|2051690_2052986_-	DUF445 domain-containing protein	NA	NA	NA	NA	NA
WP_003816959.1|2053934_2054585_+	NAD(P)H-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010930767.1|2054672_2056193_-	aldehyde dehydrogenase	NA	NA	NA	NA	NA
WP_010930768.1|2056450_2058316_+	sigma-54-dependent Fis family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|2059361_2060312_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_162268681.1|2060329_2060470_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930769.1|2061284_2061644_-	CidA/LrgA family protein	NA	NA	NA	NA	NA
WP_010930770.1|2061631_2063068_-	dethiobiotin synthase	NA	NA	NA	NA	NA
WP_010930771.1|2063064_2063718_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_010930772.1|2063714_2064908_-	8-amino-7-oxononanoate synthase	NA	NA	NA	NA	NA
WP_010930773.1|2065011_2066286_+	adenosylmethionine--8-amino-7-oxononanoate transaminase	NA	A0A1V0SKB7	Klosneuvirus	28.9	9.6e-14
WP_005012067.1|2066282_2067233_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 19
NZ_CP010249	Bordetella pertussis strain H564 chromosome, complete genome	4109554	2078437	2146813	4109554	tRNA,transposase,protease	Klosneuvirus(22.22%)	59	NA	NA
WP_005013747.1|2078437_2079388_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|2079486_2080437_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_047122784.1|2080396_2080810_-	transcriptional regulator	NA	A0A222YXG1	Escherichia_phage	59.0	3.8e-36
WP_003816708.1|2081094_2081394_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930783.1|2081803_2084086_-	RNA polymerase sigma factor RpoD	NA	A0A2I7SAT0	Vibrio_phage	30.1	3.2e-36
WP_124740709.1|2084551_2084746_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930784.1|2084771_2086802_-	DNA primase	NA	A0A0K1LMQ9	Caulobacter_phage	41.9	1.0e-65
WP_006218592.1|2086821_2087034_-	30S ribosomal protein S21	NA	NA	NA	NA	NA
WP_003810720.1|2087311_2087851_-	phosphoribosyltransferase	NA	NA	NA	NA	NA
WP_023852902.1|2087964_2089260_-	adenylosuccinate synthase	NA	A0A160ER07	Powai_lake_megavirus	33.5	3.0e-63
WP_010930786.1|2089336_2090494_-	ATP phosphoribosyltransferase regulatory subunit	NA	NA	NA	NA	NA
WP_010930787.1|2090677_2091577_-|protease	protease modulator HflC	protease	NA	NA	NA	NA
WP_010930788.1|2091595_2092900_-|protease	FtsH protease activity modulator HflK	protease	NA	NA	NA	NA
WP_010930789.1|2092865_2093972_-	GTPase HflX	NA	NA	NA	NA	NA
WP_003810707.1|2094059_2094296_-	RNA chaperone Hfq	NA	NA	NA	NA	NA
WP_010930790.1|2094434_2095505_-	histidinol-phosphate transaminase	NA	A0A1X6WGT4	Pacmanvirus	25.7	2.5e-15
WP_003810703.1|2095508_2096864_-	ribosome biogenesis GTPase Der	NA	NA	NA	NA	NA
WP_003810701.1|2096890_2098051_-	outer membrane protein assembly factor BamB	NA	NA	NA	NA	NA
WP_010930791.1|2098053_2098692_-	tetratricopeptide repeat protein	NA	NA	NA	NA	NA
WP_023995843.1|2098693_2099980_-|tRNA	histidine--tRNA ligase	tRNA	NA	NA	NA	NA
WP_010930793.1|2100038_2101334_-	flavodoxin-dependent (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase	NA	NA	NA	NA	NA
WP_003810693.1|2101340_2101847_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_004568542.1|2101843_2102992_-	23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN	NA	NA	NA	NA	NA
WP_003810689.1|2103019_2103445_-	nucleoside-diphosphate kinase	NA	D2E8E1	Anguillid_herpesvirus	43.2	2.1e-21
WP_010930794.1|2103767_2106650_+|tRNA	valine--tRNA ligase	tRNA	A0A1V0SK04	Klosneuvirus	37.1	3.7e-138
WP_023852900.1|2106742_2107498_-	MipA/OmpV family protein	NA	NA	NA	NA	NA
WP_010930796.1|2108263_2109613_+	two-component sensor histidine kinase	NA	NA	NA	NA	NA
WP_005012067.1|2109711_2110662_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930594.1|2110735_2111209_+	RidA family protein	NA	NA	NA	NA	NA
WP_010930593.1|2111234_2112443_+	aminotransferase class V-fold PLP-dependent enzyme	NA	NA	NA	NA	NA
WP_003816734.1|2112439_2113213_-|tRNA	tRNA (guanosine(37)-N1)-methyltransferase TrmD	tRNA	NA	NA	NA	NA
WP_014905757.1|2113212_2113836_-	ribosome maturation factor RimM	NA	NA	NA	NA	NA
WP_010926757.1|2114001_2114262_-	30S ribosomal protein S16	NA	NA	NA	NA	NA
WP_010930591.1|2114565_2115147_+	hypothetical protein	NA	NA	NA	NA	NA
WP_004568544.1|2115213_2115468_-	sulfurtransferase TusA family protein	NA	NA	NA	NA	NA
WP_010930590.1|2115454_2118079_-|tRNA	alanine--tRNA ligase	tRNA	A0A1V0SK38	Klosneuvirus	39.4	1.7e-81
WP_010930589.1|2118150_2118969_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003810661.1|2118965_2119571_-	prepilin-type N-terminal cleavage/methylation domain-containing protein	NA	NA	NA	NA	NA
WP_010930588.1|2119608_2120742_-	general secretion pathway protein	NA	NA	NA	NA	NA
WP_010930587.1|2122457_2122832_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930586.1|2122929_2124204_-	type 4b pilus protein PilO2	NA	NA	NA	NA	NA
WP_010930585.1|2124207_2125785_-	lipoprotein	NA	NA	NA	NA	NA
WP_010930584.1|2126691_2128047_-	amidase	NA	NA	NA	NA	NA
WP_010930583.1|2128043_2129678_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	32.7	8.2e-18
WP_010930582.1|2129670_2130501_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_003810637.1|2130518_2131463_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010930581.1|2131515_2133090_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019247553.1|2133137_2133497_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247554.1|2133489_2133810_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247555.1|2133925_2134858_+	acyclic terpene utilization AtuA family protein	NA	NA	NA	NA	NA
WP_003818676.1|2134960_2135917_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003810623.1|2136066_2137404_-	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_010930578.1|2137408_2138665_-	D-amino acid dehydrogenase	NA	NA	NA	NA	NA
WP_010930577.1|2138860_2139907_-	CDP-6-deoxy-delta-3,4-glucoseen reductase	NA	NA	NA	NA	NA
WP_003818672.1|2139964_2140333_-	aspartate 1-decarboxylase	NA	NA	NA	NA	NA
WP_010930576.1|2140463_2141336_-	MOSC N-terminal beta barrel domain-containing protein	NA	NA	NA	NA	NA
WP_003818670.1|2141412_2142315_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930574.1|2143371_2144589_-	four-carbon acid sugar kinase family protein	NA	NA	NA	NA	NA
WP_010929577.1|2145862_2146813_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 20
NZ_CP010249	Bordetella pertussis strain H564 chromosome, complete genome	4109554	2162091	2226912	4109554	tRNA,transposase,protease	Lake_Baikal_phage(20.0%)	54	NA	NA
WP_005012067.1|2162091_2163042_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247934.1|2163612_2163825_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247935.1|2163842_2164574_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003812478.1|2164608_2165250_-	CoA transferase subunit B	NA	NA	NA	NA	NA
WP_010930565.1|2165242_2165911_-	3-oxoacid CoA-transferase subunit A	NA	NA	NA	NA	NA
WP_010930564.1|2168123_2168900_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930563.1|2168921_2170079_-	thiolase	NA	NA	NA	NA	NA
WP_003812491.1|2170075_2170507_-	OB-fold domain-containing protein	NA	NA	NA	NA	NA
WP_015063637.1|2170503_2171307_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010930561.1|2171320_2171722_-	MaoC family dehydratase	NA	NA	NA	NA	NA
WP_010930560.1|2171788_2172760_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930559.1|2172825_2174049_-	CoA transferase	NA	NA	NA	NA	NA
WP_019247936.1|2174276_2175227_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930557.1|2175350_2177804_-	endopeptidase La	NA	A0A0R6PGP8	Moraxella_phage	52.0	1.5e-220
WP_010930556.1|2177992_2179297_-|protease	ATP-dependent Clp protease ATP-binding subunit ClpX	protease	G3M9Z9	Bacillus_virus	53.8	3.2e-129
WP_003812508.1|2179401_2180055_-	ATP-dependent Clp endopeptidase proteolytic subunit ClpP	NA	A0A223W000	Agrobacterium_phage	57.5	6.8e-56
WP_010930555.1|2180057_2181368_-	trigger factor	NA	NA	NA	NA	NA
WP_010930554.1|2181564_2182125_+	TIGR00645 family protein	NA	K4K6D8	Caulobacter_phage	33.7	1.0e-23
WP_010930553.1|2182236_2182437_-	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	64.4	7.4e-14
WP_003812519.1|2182782_2183349_-	DUF924 family protein	NA	NA	NA	NA	NA
WP_010930551.1|2183432_2183636_-	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	62.1	1.6e-16
WP_003812524.1|2183942_2184263_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003812526.1|2184304_2184586_-	membrane protein	NA	NA	NA	NA	NA
WP_010930550.1|2184660_2185917_-	autotransporter Phg	NA	NA	NA	NA	NA
WP_010930549.1|2186299_2186629_+	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
WP_003812536.1|2188199_2189021_+	2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase	NA	NA	NA	NA	NA
WP_010930548.1|2189020_2190160_+	succinyl-diaminopimelate desuccinylase	NA	NA	NA	NA	NA
WP_019247938.1|2190166_2191063_+	50S ribosomal protein L3 N(5)-glutamine methyltransferase	NA	NA	NA	NA	NA
WP_010930546.1|2191059_2192985_+	ATP-binding cassette domain-containing protein	NA	A0A2K9L0W2	Tupanvirus	31.8	1.1e-66
WP_010926400.1|2193344_2195957_+	TonB-dependent receptor	NA	NA	NA	NA	NA
WP_003812546.1|2196009_2198310_-	UvrD-helicase domain-containing protein	NA	A7KV33	Bacillus_phage	35.9	9.9e-110
WP_003812548.1|2198306_2199515_-	fatty acid desaturase	NA	NA	NA	NA	NA
WP_010930545.1|2199776_2200151_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|2200147_2201098_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930544.1|2201196_2202498_-	RsmB/NOP family class I SAM-dependent RNA methyltransferase	NA	NA	NA	NA	NA
WP_010930543.1|2203250_2204216_+	bifunctional riboflavin kinase/FAD synthetase	NA	NA	NA	NA	NA
WP_010930542.1|2204205_2207067_+|tRNA	isoleucine--tRNA ligase	tRNA	A0A1V0SJ93	Klosneuvirus	25.5	1.0e-71
WP_010930541.1|2207069_2207576_+	lipoprotein signal peptidase	NA	NA	NA	NA	NA
WP_010930540.1|2207680_2208889_+	bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC	NA	Q9HH70	Methanothermobacter_phage	30.0	3.8e-36
WP_033446178.1|2208890_2209829_-	membrane protein	NA	NA	NA	NA	NA
WP_010930538.1|2209990_2210464_+	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012808.1|2210460_2211411_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_004566334.1|2211521_2211962_-	DUF937 domain-containing protein	NA	NA	NA	NA	NA
WP_010930537.1|2212090_2213320_-	lytic murein transglycosylase	NA	NA	NA	NA	NA
WP_004566336.1|2213358_2214180_-	ferritin-like domain-containing protein	NA	NA	NA	NA	NA
WP_029443743.1|2214233_2215385_+	N-acetyltransferase	NA	NA	NA	NA	NA
WP_010930535.1|2215476_2215965_-	DUF1854 domain-containing protein	NA	NA	NA	NA	NA
WP_019247811.1|2218515_2221065_+	cyanophycin synthetase	NA	NA	NA	NA	NA
WP_010930533.1|2221135_2223709_+	cyanophycin synthetase	NA	NA	NA	NA	NA
WP_003813568.1|2223974_2224175_+	CsbD family protein	NA	NA	NA	NA	NA
WP_003813570.1|2224206_2224368_+	DUF1328 domain-containing protein	NA	NA	NA	NA	NA
WP_003813572.1|2224425_2224764_+	BON domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|2224912_2225863_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|2225961_2226912_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 21
NZ_CP010249	Bordetella pertussis strain H564 chromosome, complete genome	4109554	2506107	2564351	4109554	tRNA,transposase	Planktothrix_phage(28.57%)	53	NA	NA
WP_005012067.1|2506107_2507058_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930388.1|2507537_2508194_-	phosphoribosylanthranilate isomerase	NA	NA	NA	NA	NA
WP_010930387.1|2508208_2509876_-	TRAP transporter large permease subunit	NA	NA	NA	NA	NA
WP_010930386.1|2509878_2510508_-	TRAP transporter small permease subunit	NA	NA	NA	NA	NA
WP_014486072.1|2510719_2511814_-	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930384.1|2511958_2512771_-|tRNA	tRNA pseudouridine(38-40) synthase TruA	tRNA	NA	NA	NA	NA
WP_023853502.1|2512774_2514478_-	FimV N-terminal domain protein	NA	NA	NA	NA	NA
WP_010930382.1|2514528_2515659_-	aspartate-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
WP_010930381.1|2515845_2516922_-	3-isopropylmalate dehydrogenase	NA	NA	NA	NA	NA
WP_010930380.1|2517003_2517654_-	3-isopropylmalate dehydratase small subunit	NA	NA	NA	NA	NA
WP_010930379.1|2517668_2519072_-	3-isopropylmalate dehydratase large subunit	NA	NA	NA	NA	NA
WP_004567445.1|2519355_2520174_-	substrate-binding domain-containing protein	NA	NA	NA	NA	NA
WP_010930378.1|2520170_2520875_-	phosphate ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.0	2.6e-13
WP_010930377.1|2521774_2522890_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_004567447.1|2522923_2523298_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930376.1|2523320_2524478_-	formate dehydrogenase subunit gamma	NA	NA	NA	NA	NA
WP_003812666.1|2524490_2524724_-	lipoprotein	NA	NA	NA	NA	NA
WP_019247523.1|2525358_2528328_-	formate dehydrogenase subunit alpha	NA	NA	NA	NA	NA
WP_023853518.1|2528342_2528552_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019248667.1|2528703_2529333_-	molecular chaperone TorD family protein	NA	NA	NA	NA	NA
WP_010930373.1|2529329_2531420_-	4Fe-4S binding protein	NA	NA	NA	NA	NA
WP_010930372.1|2531443_2532124_-	DUF3306 domain-containing protein	NA	NA	NA	NA	NA
WP_003820494.1|2532120_2532681_-	DUF3305 domain-containing protein	NA	NA	NA	NA	NA
WP_004567450.1|2532687_2533785_-	iron-sulfur cluster carrier protein ApbC	NA	NA	NA	NA	NA
WP_010930371.1|2533937_2534531_+	molybdenum cofactor guanylyltransferase MobA	NA	NA	NA	NA	NA
WP_010930370.1|2534527_2535820_+	molybdopterin molybdotransferase MoeA	NA	NA	NA	NA	NA
WP_003812685.1|2535833_2536376_+	molybdopterin-guanine dinucleotide biosynthesis protein B	NA	NA	NA	NA	NA
WP_010930369.1|2536385_2537222_-	M48 family metallopeptidase	NA	NA	NA	NA	NA
WP_003820487.1|2537255_2538317_-	chorismate synthase	NA	A0A291AU41	Pandoravirus	42.8	2.9e-80
WP_019247210.1|2538358_2539411_-	EAL domain-containing protein	NA	NA	NA	NA	NA
WP_019247209.1|2539426_2539729_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012808.1|2539870_2540821_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930368.1|2540999_2542694_+	iron ABC transporter permease	NA	NA	NA	NA	NA
WP_003809599.1|2542690_2543776_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	37.7	6.4e-27
WP_010930367.1|2543823_2544723_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003809593.1|2544733_2545378_+	histidine phosphatase family protein	NA	NA	NA	NA	NA
WP_010930366.1|2546399_2549642_-	carbamoyl-phosphate synthase large subunit	NA	NA	NA	NA	NA
WP_023852833.1|2549652_2550807_-	glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit	NA	R4TGJ8	Halovirus	35.4	3.3e-53
WP_010930364.1|2551033_2551996_+	transaldolase	NA	H6WFR1	Cyanophage	29.2	7.5e-11
WP_076879624.1|2552094_2553045_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930363.1|2553143_2554094_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930362.1|2554103_2554793_-	VIT family protein	NA	NA	NA	NA	NA
WP_003811741.1|2554852_2555290_-	PaaI family thioesterase	NA	NA	NA	NA	NA
WP_003811743.1|2555335_2556229_-	3-hydroxyisobutyrate dehydrogenase	NA	NA	NA	NA	NA
WP_003811746.1|2556276_2557449_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003811748.1|2557445_2558600_-	acyl-CoA dehydrogenase family protein	NA	NA	NA	NA	NA
WP_003811750.1|2558796_2559147_-	RnfH family protein	NA	NA	NA	NA	NA
WP_003811752.1|2559136_2559571_-	type II toxin-antitoxin system RatA family toxin	NA	NA	NA	NA	NA
WP_010930800.1|2559587_2560538_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811754.1|2560685_2561153_+	SsrA-binding protein SmpB	NA	W5RAM5	Staphylococcus_phage	45.1	6.2e-27
WP_010930360.1|2561133_2562291_-	GGDEF domain-containing protein	NA	A0A127AWB9	Bacillus_phage	36.2	2.3e-14
WP_003811759.1|2562356_2563283_-	paraslipin	NA	NA	NA	NA	NA
WP_005012067.1|2563400_2564351_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 22
NZ_CP010249	Bordetella pertussis strain H564 chromosome, complete genome	4109554	2606631	2673131	4109554	transposase	uncultured_Caudovirales_phage(40.0%)	56	NA	NA
WP_005012067.1|2606631_2607582_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811850.1|2607951_2608524_+	flagellar basal body-associated protein FliL	NA	NA	NA	NA	NA
WP_003811852.1|2608526_2609537_+	flagellar motor switch protein FliM	NA	NA	NA	NA	NA
WP_010930335.1|2609529_2610030_+	flagellar motor switch protein FliN	NA	NA	NA	NA	NA
WP_003811855.1|2610040_2610382_+	flagellar biosynthetic protein FliO	NA	NA	NA	NA	NA
WP_015041547.1|2610393_2611185_+	flagellar type III secretion system pore protein FliP	NA	NA	NA	NA	NA
WP_003811859.1|2611201_2611471_+	flagellar biosynthesis protein FliQ	NA	NA	NA	NA	NA
WP_010930333.1|2611493_2612282_+	flagellar biosynthetic protein FliR	NA	NA	NA	NA	NA
WP_010929632.1|2612328_2613345_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_014486070.1|2613561_2615004_-	PAS domain-containing protein	NA	A0A1B0V854	Salmonella_phage	41.8	1.0e-35
WP_010930332.1|2615182_2616802_-	Tar ligand binding domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	45.3	1.5e-08
WP_010930331.1|2616922_2618743_-	Tar ligand binding domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	52.6	6.4e-11
WP_010930330.1|2618821_2620354_-	flagellar hook-associated protein FlgL	NA	NA	NA	NA	NA
WP_010930329.1|2620387_2622034_-	flagellar hook-associated protein FlgK	NA	NA	NA	NA	NA
WP_010930328.1|2622103_2623126_-	flagellar assembly peptidoglycan hydrolase FlgJ	NA	A0A088F6W1	Sulfitobacter_phage	31.4	1.9e-12
WP_010930327.1|2623143_2624277_-	flagellar basal body P-ring protein FlgI	NA	NA	NA	NA	NA
WP_010930326.1|2624279_2624969_-	flagellar basal body L-ring protein FlgH	NA	NA	NA	NA	NA
WP_010930325.1|2624968_2625754_-	flagellar basal-body rod protein FlgG	NA	NA	NA	NA	NA
WP_003817181.1|2625797_2626562_-	flagellar basal body rod protein FlgF	NA	NA	NA	NA	NA
WP_003817180.1|2626600_2628022_-	flagellar hook-basal body complex protein	NA	NA	NA	NA	NA
WP_010930324.1|2628087_2628792_-	flagellar basal body rod modification protein FlgD	NA	NA	NA	NA	NA
WP_003817176.1|2628839_2629259_-	flagellar basal body rod protein FlgC	NA	NA	NA	NA	NA
WP_010930323.1|2629271_2629679_-	flagellar basal body rod protein FlgB	NA	NA	NA	NA	NA
WP_010930322.1|2629862_2630573_+	flagellar basal body P-ring formation protein FlgA	NA	NA	NA	NA	NA
WP_003817172.1|2630699_2630990_+	flagellar biosynthesis anti-sigma factor FlgM	NA	NA	NA	NA	NA
WP_003817170.1|2631007_2631490_+	flagellar protein FlgN	NA	NA	NA	NA	NA
WP_010930321.1|2635995_2637150_-	flagellar type III secretion system protein FlhB	NA	NA	NA	NA	NA
WP_010931363.1|2637455_2638472_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010930319.1|2638718_2639507_+	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003812020.1|2639573_2640254_+	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003812022.1|2640250_2641021_+	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	39.1	9.8e-30
WP_010930208.1|2641119_2642070_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811401.1|2642125_2643043_-	2-dehydropantoate 2-reductase	NA	NA	NA	NA	NA
WP_003811400.1|2643053_2644232_-	mandelate racemase/muconate lactonizing enzyme family protein	NA	NA	NA	NA	NA
WP_010930318.1|2644251_2645247_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003811396.1|2646835_2647444_+	3-isopropylmalate dehydratase small subunit	NA	NA	NA	NA	NA
WP_003811393.1|2647431_2648472_+	LacI family DNA-binding transcriptional regulator	NA	NA	NA	NA	NA
WP_003811391.1|2648489_2649452_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003811389.1|2649448_2650642_-	CoA transferase	NA	NA	NA	NA	NA
WP_010930317.1|2650638_2651436_-	citryl-CoA lyase	NA	NA	NA	NA	NA
WP_014486069.1|2651461_2652448_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930316.1|2652466_2654506_-	acetate--CoA ligase family protein	NA	NA	NA	NA	NA
WP_010930315.1|2654707_2655388_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930314.1|2655401_2656313_-	CoA ester lyase	NA	NA	NA	NA	NA
WP_003811381.1|2656309_2656888_-	NAD(P)H-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010930313.1|2657026_2657932_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930312.1|2657939_2661359_+	TM0106 family RecB-like putative nuclease	NA	NA	NA	NA	NA
WP_010930311.1|2661346_2663947_-	BP1344/BB2830 family autotransporter	NA	NA	NA	NA	NA
WP_003811375.1|2664902_2665535_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003811372.1|2665928_2666687_+	endonuclease/exonuclease/phosphatase family protein	NA	NA	NA	NA	NA
WP_003811370.1|2666683_2667886_+	cardiolipin synthase ClsB	NA	NA	NA	NA	NA
WP_010930208.1|2668073_2669024_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930310.1|2669931_2671077_+	DUF3182 family protein	NA	NA	NA	NA	NA
WP_019247449.1|2671063_2671819_+	alpha/beta fold hydrolase	NA	NA	NA	NA	NA
WP_003811361.1|2671935_2672115_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929588.1|2672180_2673131_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 23
NZ_CP010249	Bordetella pertussis strain H564 chromosome, complete genome	4109554	2877243	2958521	4109554	tRNA,transposase	Planktothrix_phage(16.67%)	58	NA	NA
WP_005012067.1|2877243_2878194_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003813621.1|2878190_2879093_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930206.1|2879180_2879939_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_023853245.1|2879951_2881043_-	cell division protein ZapE	NA	NA	NA	NA	NA
WP_003813626.1|2881140_2882568_-	dihydrolipoyl dehydrogenase	NA	A0A2K5B2C5	Erysipelothrix_phage	28.1	2.1e-41
WP_010930204.1|2882797_2884012_-	2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase	NA	NA	NA	NA	NA
WP_003813631.1|2884057_2886928_-	2-oxoglutarate dehydrogenase E1 component	NA	NA	NA	NA	NA
WP_010930202.1|2889338_2889827_-	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930201.1|2889952_2892649_+	alpha-ketoglutarate dehydrogenase	NA	NA	NA	NA	NA
WP_010930200.1|2892803_2895086_+	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
WP_019248935.1|2895260_2895884_+	serotype 2 fimbrial subunit	NA	NA	NA	NA	NA
WP_010930198.1|2895982_2896933_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812405.1|2896979_2897534_-	transcription elongation factor GreB	NA	NA	NA	NA	NA
WP_003816844.1|2897601_2898447_-	PHP domain-containing protein	NA	NA	NA	NA	NA
WP_019248398.1|2898516_2899485_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_010930196.1|2903180_2907107_-	inverse autotransporter beta-barrel domain-containing protein	NA	NA	NA	NA	NA
WP_010930194.1|2907842_2911073_-	autotransporter SphB3	NA	NA	NA	NA	NA
WP_010928340.1|2911354_2912182_-	TatD family hydrolase	NA	NA	NA	NA	NA
WP_003812422.1|2912215_2912911_-	lipoprotein-releasing ABC transporter ATP-binding protein LolD	NA	G9BWD6	Planktothrix_phage	38.6	7.0e-35
WP_019247537.1|2912903_2914184_-	lipoprotein-releasing ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_010930192.1|2914193_2915171_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930191.1|2915152_2916853_+	single-stranded-DNA-specific exonuclease RecJ	NA	A7KV88	Bacillus_phage	28.3	1.3e-50
WP_010926448.1|2916955_2918059_+	peptide chain release factor 2	NA	NA	NA	NA	NA
WP_010926447.1|2918089_2918845_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930190.1|2918851_2920372_+|tRNA	lysine--tRNA ligase	tRNA	A0A1V0SAC0	Catovirus	36.0	1.2e-82
WP_010930189.1|2920414_2920717_+	membrane protein	NA	NA	NA	NA	NA
WP_003812436.1|2920713_2921346_-	TetR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930188.1|2921424_2923290_-	long-chain fatty acid--CoA ligase	NA	A0A1V0SBX8	Catovirus	23.3	9.3e-50
WP_020699602.1|2923286_2924081_-	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	23.3	1.2e-11
WP_010930186.1|2924109_2925225_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930185.1|2926129_2927008_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010930184.1|2927007_2927832_-	ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	22.7	1.0e-08
WP_010929591.1|2927999_2928950_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930183.1|2929162_2932012_+	EAL domain-containing protein	NA	NA	NA	NA	NA
WP_010930182.1|2931993_2932722_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_019248549.1|2932862_2934326_-	YdiU family protein	NA	A0A075BSJ0	Microcystis_phage	32.5	1.7e-43
WP_010930180.1|2934322_2934694_-	DUF2069 domain-containing protein	NA	NA	NA	NA	NA
WP_003812701.1|2934711_2936025_+	YihY family inner membrane protein	NA	NA	NA	NA	NA
WP_003812703.1|2936061_2936520_+	CBS domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|2936632_2937583_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930178.1|2937579_2938593_-|tRNA	tRNA dihydrouridine(20/20a) synthase DusA	tRNA	NA	NA	NA	NA
WP_003812707.1|2938732_2939719_+	homoserine kinase	NA	NA	NA	NA	NA
WP_161633091.1|2940077_2940785_-	DUF192 domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|2941365_2942316_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003809618.1|2942467_2943070_-	YhbY family RNA-binding protein	NA	NA	NA	NA	NA
WP_010930175.1|2943088_2943721_+	RlmE family RNA methyltransferase	NA	NA	NA	NA	NA
WP_162096758.1|2943765_2944017_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930174.1|2943958_2945845_+	ATP-dependent metallopeptidase FtsH/Yme1/Tma family protein	NA	M4QMW8	Micromonas_pusilla_virus	41.5	1.4e-109
WP_010930173.1|2945863_2946706_+	dihydropteroate synthase	NA	A0A0B5J4J5	Pandoravirus	32.5	3.2e-26
WP_003819875.1|2946702_2948061_+	phosphoglucosamine mutase	NA	NA	NA	NA	NA
WP_003809629.1|2948281_2949076_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_010930172.1|2949306_2950800_-	exopolyphosphatase	NA	NA	NA	NA	NA
WP_010930171.1|2951035_2953117_+	polyphosphate kinase 1	NA	NA	NA	NA	NA
WP_014486066.1|2953311_2954352_+	phosphate ABC transporter substrate-binding protein PstS	NA	M4QHS4	Cyanophage	40.2	2.1e-51
WP_010930169.1|2954486_2955503_+	phosphate ABC transporter permease subunit PstC	NA	NA	NA	NA	NA
WP_003809638.1|2955524_2956382_+	phosphate ABC transporter permease PstA	NA	NA	NA	NA	NA
WP_010930167.1|2956426_2957203_+	phosphate ABC transporter ATP-binding protein PstB	NA	G9BWD6	Planktothrix_phage	28.7	4.3e-17
WP_005013747.1|2957570_2958521_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 24
NZ_CP010249	Bordetella pertussis strain H564 chromosome, complete genome	4109554	2967589	3016527	4109554	tRNA,holin,transposase	uncultured_Mediterranean_phage(37.5%)	46	NA	NA
WP_003819794.1|2967589_2968003_-|holin	phage holin family protein	holin	NA	NA	NA	NA
WP_003809432.1|2968043_2968361_-	DUF883 domain-containing protein	NA	NA	NA	NA	NA
WP_003809431.1|2968445_2969162_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930160.1|2969425_2970847_+	uroporphyrinogen-III C-methyltransferase	NA	NA	NA	NA	NA
WP_019248433.1|2970913_2973661_-	pertactin autotransporter	NA	NA	NA	NA	NA
WP_010931363.1|2973993_2975010_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010930157.1|2975345_2975987_-	uracil phosphoribosyltransferase	NA	NA	NA	NA	NA
WP_003809423.1|2976077_2977514_-	D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase	NA	NA	NA	NA	NA
WP_023853534.1|2977671_2978745_+|tRNA	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	tRNA	NA	NA	NA	NA
WP_010930155.1|2978741_2979878_+|tRNA	tRNA guanosine(34) transglycosylase Tgt	tRNA	A0A1B1IVQ4	uncultured_Mediterranean_phage	44.4	1.9e-85
WP_003809416.1|2980022_2980367_+	preprotein translocase subunit YajC	NA	A0A1B1IVR5	uncultured_Mediterranean_phage	40.4	1.0e-10
WP_010930154.1|2980433_2982314_+	protein translocase subunit SecD	NA	NA	NA	NA	NA
WP_003809411.1|2982363_2983299_+	protein translocase subunit SecF	NA	A0A1B1IVP7	uncultured_Mediterranean_phage	35.5	3.0e-41
WP_010931363.1|2983631_2984648_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_015041211.1|2985585_2987013_+|tRNA	tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB	tRNA	NA	NA	NA	NA
WP_010930151.1|2987009_2988032_+	PhoH family protein	NA	A0A0S0MVD6	Pseudomonas_phage	45.4	8.7e-50
WP_003809396.1|2988021_2988495_+	rRNA maturation RNase YbeY	NA	NA	NA	NA	NA
WP_010930149.1|2988635_2989523_+	CBS domain-containing protein	NA	NA	NA	NA	NA
WP_014486064.1|2989519_2991163_+	apolipoprotein N-acyltransferase	NA	NA	NA	NA	NA
WP_010930148.1|2991159_2992209_-	aldo/keto reductase	NA	NA	NA	NA	NA
WP_010931363.1|2992997_2994014_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003817162.1|2994113_2994746_-	protein phosphatase CheZ	NA	NA	NA	NA	NA
WP_003811911.1|2994754_2995144_-	chemotaxis protein CheY	NA	Q56AR1	Bacillus_thuringiensis_phage	33.3	5.7e-10
WP_010930146.1|2995196_2996249_-	chemotaxis response regulator protein-glutamate methylesterase	NA	NA	NA	NA	NA
WP_010930145.1|2997112_2998819_-	Tar ligand binding domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	41.7	1.4e-12
WP_003811919.1|2998892_2999393_-	chemotaxis protein CheW	NA	NA	NA	NA	NA
WP_010930144.1|2999407_3001465_-	chemotaxis protein CheA	NA	NA	NA	NA	NA
WP_019247393.1|3001491_3001785_-	response regulator	NA	NA	NA	NA	NA
WP_003817154.1|3001886_3002834_-	flagellar motor protein MotB	NA	NA	NA	NA	NA
WP_003811927.1|3002846_3003722_-	flagellar motor stator protein MotA	NA	NA	NA	NA	NA
WP_003811929.1|3003842_3004403_-	flagellar transcriptional regulator FlhC	NA	NA	NA	NA	NA
WP_010930143.1|3004437_3004761_-	flagellar transcriptional regulator FlhD	NA	NA	NA	NA	NA
WP_003811933.1|3005196_3005934_+	RNA polymerase sigma factor FliA	NA	NA	NA	NA	NA
WP_005012067.1|3006232_3007183_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003809486.1|3007426_3007690_+	translation initiation factor IF-1	NA	NA	NA	NA	NA
WP_003819817.1|3007763_3008045_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930142.1|3008061_3008922_-	M23 family metallopeptidase	NA	A0A292GJG6	Xanthomonas_phage	36.1	2.6e-15
WP_003809479.1|3008918_3009254_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930141.1|3009307_3009958_-	molybdopterin adenylyltransferase	NA	NA	NA	NA	NA
WP_019247197.1|3011638_3012583_-	AzlC family ABC transporter permease	NA	NA	NA	NA	NA
WP_003809467.1|3012628_3012946_-	MerR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930139.1|3012948_3013887_-	DnaJ domain-containing protein	NA	A0A0P0YMJ9	Yellowstone_lake_phycodnavirus	24.1	5.6e-11
WP_003819814.1|3014064_3014550_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_010930138.1|3014568_3015117_+	DinB family protein	NA	NA	NA	NA	NA
WP_023994624.1|3015148_3015301_+	hypothetical protein	NA	NA	NA	NA	NA
WP_023853531.1|3015393_3016527_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 25
NZ_CP010249	Bordetella pertussis strain H564 chromosome, complete genome	4109554	3028134	3100628	4109554	transposase	Bacillus_virus(16.67%)	58	NA	NA
WP_010929584.1|3028134_3029085_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_062826658.1|3029127_3030303_+	flagellin FliC	NA	NA	NA	NA	NA
WP_010930129.1|3030524_3032315_-	dihydrolipoyl dehydrogenase	NA	A0A2K5B2C5	Erysipelothrix_phage	25.2	2.4e-39
WP_010930128.1|3032327_3033989_-	dihydrolipoyllysine-residue acetyltransferase	NA	NA	NA	NA	NA
WP_010930127.1|3034001_3036707_-	pyruvate dehydrogenase (acetyl-transferring), homodimeric type	NA	NA	NA	NA	NA
WP_003817147.1|3036999_3038754_+	PAS domain S-box protein	NA	NA	NA	NA	NA
WP_010930126.1|3038750_3039377_+	response regulator transcription factor	NA	NA	NA	NA	NA
WP_003811948.1|3039373_3040225_+	bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD	NA	A0A249XZQ2	Enterococcus_phage	39.8	2.1e-33
WP_019248379.1|3040300_3042415_+	M3 family metallopeptidase	NA	NA	NA	NA	NA
WP_010930124.1|3042601_3043216_+	SCO family protein	NA	NA	NA	NA	NA
WP_010930123.1|3043361_3043613_+	GlsB/YeaQ/YmgE family stress response membrane protein	NA	NA	NA	NA	NA
WP_014486063.1|3043682_3045065_-	efflux transporter outer membrane subunit	NA	NA	NA	NA	NA
WP_010930121.1|3045061_3048241_-	efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_029443805.1|3049048_3049966_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930119.1|3050017_3050749_-	rRNA pseudouridine synthase	NA	NA	NA	NA	NA
WP_010926548.1|3050808_3051381_+	chorismate lyase	NA	NA	NA	NA	NA
WP_010929632.1|3052889_3053906_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010930118.1|3054043_3055093_-	NADP(H)-dependent aldo-keto reductase	NA	NA	NA	NA	NA
WP_005012067.1|3055197_3056148_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003813314.1|3056243_3056969_-	CoA pyrophosphatase	NA	NA	NA	NA	NA
WP_003813315.1|3057179_3057560_-	50S ribosomal protein L19	NA	NA	NA	NA	NA
WP_014905652.1|3057865_3058738_+	EamA family transporter	NA	NA	NA	NA	NA
WP_023852686.1|3058745_3059126_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023852693.1|3059279_3060554_-	PA0069 family radical SAM protein	NA	NA	NA	NA	NA
WP_010930113.1|3062041_3062950_-	sulfate adenylyltransferase subunit CysD	NA	NA	NA	NA	NA
WP_010930112.1|3063747_3064812_-	sulfate ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	30.3	3.8e-24
WP_170954292.1|3066648_3067650_-	sulfate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003813333.1|3067872_3068514_-	peroxiredoxin	NA	NA	NA	NA	NA
WP_003821527.1|3068596_3070423_-	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_010930111.1|3070666_3071596_-	electron transfer flavoprotein subunit alpha	NA	NA	NA	NA	NA
WP_010930110.1|3071595_3072345_-	electron transfer flavoprotein subunit beta/FixA family protein	NA	NA	NA	NA	NA
WP_003821521.1|3072416_3073331_-	histone deacetylase family protein	NA	A0A2K9KZC4	Tupanvirus	34.7	9.8e-45
WP_010930108.1|3073350_3074496_+	lytic murein transglycosylase B	NA	NA	NA	NA	NA
WP_014486062.1|3074556_3075468_-	cysteine synthase CysM	NA	A0A1X9I5K7	Streptococcus_phage	38.8	8.0e-47
WP_005012067.1|3075548_3076499_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_033446303.1|3076597_3077182_-	helix-hairpin-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003821513.1|3077216_3078206_-	ADP-glyceromanno-heptose 6-epimerase	NA	E3SJ87	Synechococcus_phage	34.4	2.2e-26
WP_010930105.1|3078202_3079144_-	D-glycero-beta-D-manno-heptose-7-phosphate kinase	NA	A0A2H4N7X4	Lake_Baikal_phage	28.1	1.5e-16
WP_010930104.1|3079140_3080361_-	lipopolysaccharide assembly protein LapB	NA	NA	NA	NA	NA
WP_010930103.1|3080403_3080718_-	DUF1049 domain-containing protein	NA	NA	NA	NA	NA
WP_010930102.1|3080909_3081269_-	integration host factor subunit beta	NA	NA	NA	NA	NA
WP_010930101.1|3081270_3082986_-	30S ribosomal protein S1	NA	NA	NA	NA	NA
WP_010930100.1|3083173_3083845_-	(d)CMP kinase	NA	NA	NA	NA	NA
WP_010930099.1|3083859_3085188_-	3-phosphoshikimate 1-carboxyvinyltransferase	NA	NA	NA	NA	NA
WP_010930098.1|3085184_3086084_-	prephenate dehydrogenase/arogenate dehydrogenase family protein	NA	NA	NA	NA	NA
WP_010930097.1|3086170_3087256_-	prephenate dehydratase	NA	NA	NA	NA	NA
WP_010930096.1|3087248_3088382_-	3-phosphoserine/phosphohydroxythreonine transaminase	NA	M1Q1P2	Streptococcus_phage	44.0	6.4e-78
WP_010930095.1|3088381_3091063_-	DNA gyrase subunit A	NA	G3M9Z5	Bacillus_virus	33.5	3.2e-104
WP_010930094.1|3091433_3092015_+	OmpA family protein	NA	NA	NA	NA	NA
WP_010930093.1|3092140_3092866_+	bifunctional 3-demethylubiquinone 3-O-methyltransferase/2-octaprenyl-6-hydroxy phenol methylase	NA	NA	NA	NA	NA
WP_010930092.1|3092862_3093540_+	HAD-IA family hydrolase	NA	NA	NA	NA	NA
WP_010930091.1|3093755_3094937_+	MFS transporter	NA	NA	NA	NA	NA
WP_010930090.1|3095709_3095892_+	type II toxin-antitoxin system HicA family toxin	NA	A0A1L2JY37	Aeribacillus_phage	56.1	3.7e-12
WP_005012808.1|3095921_3096872_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_004566317.1|3097001_3097394_+	type II toxin-antitoxin system HicB family antitoxin	NA	A0A0R6PJ17	Moraxella_phage	45.0	4.8e-25
WP_003821497.1|3097670_3098582_-	LysR family transcriptional regulator	NA	Q6JIH3	Burkholderia_virus	27.6	4.4e-05
WP_010930088.1|3098706_3099681_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_005012067.1|3099677_3100628_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 26
NZ_CP010249	Bordetella pertussis strain H564 chromosome, complete genome	4109554	3114135	3167653	4109554	holin,transposase	Bacillus_phage(33.33%)	44	NA	NA
WP_010930066.1|3114135_3115086_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003810839.1|3115198_3115450_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003810835.1|3115955_3117074_-	mannose-6-phosphate isomerase	NA	NA	NA	NA	NA
WP_003810832.1|3117193_3117406_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930064.1|3117565_3117787_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929591.1|3117839_3118790_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930062.1|3119966_3121337_-	acetyl-CoA carboxylase biotin carboxylase subunit	NA	NA	NA	NA	NA
WP_010930061.1|3121369_3122161_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930060.1|3122173_3123229_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_019247557.1|3123254_3124130_-	amidohydrolase	NA	NA	NA	NA	NA
WP_023852826.1|3124235_3124484_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003819989.1|3124518_3125973_-	carboxylase	NA	NA	NA	NA	NA
WP_004568140.1|3125969_3126491_-	acetyl-CoA carboxylase biotin carboxyl carrier protein	NA	NA	NA	NA	NA
WP_010930057.1|3126519_3127872_-	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_029444137.1|3128095_3130984_-	HD domain-containing protein	NA	NA	NA	NA	NA
WP_010930056.1|3133128_3134430_+	phospholipase A	NA	NA	NA	NA	NA
WP_010930055.1|3134444_3135161_-	flagellar brake protein	NA	NA	NA	NA	NA
WP_010930054.1|3135442_3136123_+	DUF3313 domain-containing protein	NA	NA	NA	NA	NA
WP_003809770.1|3136134_3136302_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023852837.1|3136410_3136557_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930052.1|3136650_3137310_-	thiopurine S-methyltransferase	NA	NA	NA	NA	NA
WP_010930051.1|3137708_3139541_+	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	26.4	1.3e-27
WP_005012067.1|3139537_3140488_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814007.1|3141651_3143367_+	acetolactate synthase 3 catalytic subunit	NA	A0A0P0CDR3	Ostreococcus_lucimarinus_virus	30.3	3.1e-60
WP_003814006.1|3143377_3143869_+	acetolactate synthase small subunit	NA	NA	NA	NA	NA
WP_010930015.1|3143941_3144958_+	ketol-acid reductoisomerase	NA	NA	NA	NA	NA
WP_003814004.1|3145125_3145905_+	CDP-diacylglycerol--serine O-phosphatidyltransferase	NA	NA	NA	NA	NA
WP_003814003.1|3145923_3146451_-	lipoprotein	NA	NA	NA	NA	NA
WP_003814002.1|3146744_3147014_+	30S ribosomal protein S15	NA	NA	NA	NA	NA
WP_003821234.1|3147104_3149264_+	polyribonucleotide nucleotidyltransferase	NA	NA	NA	NA	NA
WP_003814000.1|3149384_3150104_+	lipoprotein	NA	NA	NA	NA	NA
WP_005013747.1|3150100_3151051_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003813999.1|3151191_3152409_+	threonine ammonia-lyase	NA	NA	NA	NA	NA
WP_010930016.1|3152402_3153014_-	PIN domain-containing protein	NA	K4HZX4	Acidithiobacillus_phage	32.5	3.3e-12
WP_003813997.1|3153647_3154625_+	NAD(P)H-quinone oxidoreductase	NA	NA	NA	NA	NA
WP_003813996.1|3154768_3155515_+	triose-phosphate isomerase	NA	NA	NA	NA	NA
WP_010930017.1|3155536_3155983_+	preprotein translocase subunit SecG	NA	NA	NA	NA	NA
WP_010930018.1|3156770_3159002_+|holin	choline BCCT transporter BetT	holin	NA	NA	NA	NA
WP_003813993.1|3159024_3159825_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003813992.1|3160106_3161339_+	methylaspartate ammonia-lyase	NA	NA	NA	NA	NA
WP_003813991.1|3161449_3162439_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930019.1|3162469_3163858_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_003813988.1|3165456_3166440_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_023994644.1|3166636_3167653_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
>prophage 27
NZ_CP010249	Bordetella pertussis strain H564 chromosome, complete genome	4109554	3232111	3305273	4109554	transposase	Klosneuvirus(16.67%)	57	NA	NA
WP_041337087.1|3232111_3233062_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003813068.1|3233058_3234078_-	class 1 fructose-bisphosphatase	NA	A0A1V0SKX4	Klosneuvirus	35.7	1.5e-49
WP_010930049.1|3234087_3236796_-	aminopeptidase N	NA	A0A0P0IY26	Acinetobacter_phage	24.0	2.8e-15
WP_010930050.1|3236943_3237600_+	DUF4136 domain-containing protein	NA	NA	NA	NA	NA
WP_005013747.1|3237698_3238649_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023998705.1|3238796_3239690_+	mechanosensitive ion channel family protein	NA	NA	NA	NA	NA
WP_010930013.1|3239889_3241584_+	thiamine pyrophosphate-binding protein	NA	NA	NA	NA	NA
WP_010930012.1|3241618_3242545_+	VOC family protein	NA	NA	NA	NA	NA
WP_010930011.1|3242613_3243711_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003818996.1|3243729_3244593_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	38.9	9.6e-34
WP_010930010.1|3244604_3245387_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_004566042.1|3245383_3246502_+	DUF2817 domain-containing protein	NA	NA	NA	NA	NA
WP_010930009.1|3246498_3248031_+	acyl--CoA ligase	NA	NA	NA	NA	NA
WP_003818991.1|3248071_3249079_+	zinc-binding dehydrogenase	NA	NA	NA	NA	NA
WP_023999677.1|3249223_3249946_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930007.1|3249961_3250984_-	autotransporter outer membrane beta-barrel domain-containing protein	NA	NA	NA	NA	NA
WP_010930006.1|3251300_3252035_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930005.1|3252119_3253865_+	acetolactate synthase	NA	NA	NA	NA	NA
WP_010930004.1|3253861_3254614_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930003.1|3254658_3255615_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003818983.1|3255703_3256270_+	membrane protein	NA	NA	NA	NA	NA
WP_010930002.1|3256277_3257138_-	D-amino acid aminotransferase	NA	NA	NA	NA	NA
WP_020699739.1|3257167_3257896_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	42.4	3.4e-32
WP_003807497.1|3257927_3258611_-	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_010930000.1|3259448_3260363_-	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929999.1|3260427_3261336_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929998.1|3261426_3262851_-	TolC family protein	NA	NA	NA	NA	NA
WP_010929997.1|3262852_3264175_-	cyclolysin T1SS periplasmic adaptor subunit CyaD	NA	NA	NA	NA	NA
WP_010929996.1|3264171_3266310_-	cyclolysin T1SS permease/ATPase CyaB	NA	W8CYL7	Bacillus_phage	29.2	2.7e-45
WP_010929995.1|3266387_3271508_-	bifunctional adenylate cyclase toxin/hemolysin CyaA	NA	NA	NA	NA	NA
WP_153302771.1|3271608_3271917_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929994.1|3271986_3272544_+	cyclolysin-activating lysine-acyltransferase	NA	NA	NA	NA	NA
WP_010929993.1|3272559_3274041_-	NAD-dependent succinate-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
WP_010929992.1|3276211_3277549_-	FAD-binding oxidoreductase	NA	NA	NA	NA	NA
WP_010929991.1|3277583_3279581_-	hydantoinase B/oxoprolinase family protein	NA	NA	NA	NA	NA
WP_010929990.1|3279598_3281647_-	hydantoinase/oxoprolinase family protein	NA	NA	NA	NA	NA
WP_010929989.1|3281777_3282644_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929988.1|3282912_3283878_-	octaprenyl diphosphate synthase	NA	NA	NA	NA	NA
WP_010929987.1|3283992_3285141_-	fumarylacetoacetate hydrolase family protein	NA	NA	NA	NA	NA
WP_003807462.1|3285565_3285877_+	50S ribosomal protein L21	NA	NA	NA	NA	NA
WP_003807460.1|3285910_3286171_+	50S ribosomal protein L27	NA	NA	NA	NA	NA
WP_003807459.1|3286320_3287454_+	GTPase ObgE	NA	NA	NA	NA	NA
WP_003807457.1|3287524_3288661_+	glutamate 5-kinase	NA	A0A1X9I5D0	Streptococcus_phage	44.8	5.8e-63
WP_010925762.1|3288826_3289621_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_003807452.1|3289683_3290127_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_005012808.1|3290242_3291193_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929985.1|3291294_3291723_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010929984.1|3291795_3293991_+	DUF1156 domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|3294212_3295163_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023852739.1|3295122_3295647_-	sigma-70 family RNA polymerase sigma factor	NA	NA	NA	NA	NA
WP_003814467.1|3295778_3296750_+	FecR family protein	NA	NA	NA	NA	NA
WP_010929983.1|3296869_3299314_+	TonB-dependent siderophore receptor	NA	NA	NA	NA	NA
WP_010929982.1|3299329_3299920_-	polyisoprenoid-binding protein	NA	NA	NA	NA	NA
WP_010929591.1|3300163_3301114_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814462.1|3301271_3302537_-	saccharopine dehydrogenase family protein	NA	NA	NA	NA	NA
WP_003814461.1|3302570_3303668_-	carboxynorspermidine decarboxylase	NA	NA	NA	NA	NA
WP_005013747.1|3304322_3305273_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 28
NZ_CP010249	Bordetella pertussis strain H564 chromosome, complete genome	4109554	3316560	3418771	4109554	tail,protease,transposase,tRNA,terminase	uncultured_Caudovirales_phage(14.29%)	109	NA	NA
WP_005012067.1|3316560_3317511_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814437.1|3318242_3318620_+	4a-hydroxytetrahydrobiopterin dehydratase	NA	NA	NA	NA	NA
WP_003814436.1|3318604_3319306_-	membrane protein	NA	NA	NA	NA	NA
WP_010931409.1|3319449_3320142_-	nucleotidyltransferase family protein	NA	NA	NA	NA	NA
WP_010931410.1|3320141_3321245_-	phosphotransferase	NA	NA	NA	NA	NA
WP_010931411.1|3321354_3323727_+	LPS-assembly protein LptD	NA	NA	NA	NA	NA
WP_010931412.1|3323723_3325283_+	chaperone SurA	NA	NA	NA	NA	NA
WP_010931413.1|3325307_3326105_+	16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA	NA	NA	NA	NA	NA
WP_010931414.1|3326136_3327282_-	glycerate kinase	NA	W6LM47	Streptococcus_phage	42.2	1.7e-41
WP_003814419.1|3327386_3328829_+	pyruvate kinase	NA	NA	NA	NA	NA
WP_010929184.1|3328831_3330061_-	spore maturation protein	NA	NA	NA	NA	NA
WP_005012808.1|3332198_3333149_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247922.1|3334278_3334836_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019247923.1|3334811_3335162_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003814657.1|3335330_3336125_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.6	2.4e-15
WP_010931416.1|3336121_3337171_-	iron ABC transporter permease	NA	NA	NA	NA	NA
WP_003814652.1|3337170_3337860_-	tol-pal system protein YbgF	NA	NA	NA	NA	NA
WP_003814650.1|3337946_3338444_-	peptidoglycan-associated lipoprotein Pal	NA	NA	NA	NA	NA
WP_010931417.1|3338475_3339792_-	Tol-Pal system protein TolB	NA	NA	NA	NA	NA
WP_010931418.1|3339808_3340783_-	cell envelope integrity protein TolA	NA	NA	NA	NA	NA
WP_003814643.1|3340819_3341278_-	protein TolR	NA	NA	NA	NA	NA
WP_003814641.1|3341277_3341958_-	protein TolQ	NA	NA	NA	NA	NA
WP_010931419.1|3341960_3342389_-	tol-pal system-associated acyl-CoA thioesterase	NA	NA	NA	NA	NA
WP_003814636.1|3342441_3344172_-|tRNA	proline--tRNA ligase	tRNA	A0A2K9L3R9	Tupanvirus	29.4	4.6e-11
WP_003814635.1|3344237_3344810_+	RNA pyrophosphohydrolase	NA	NA	NA	NA	NA
WP_010931420.1|3344790_3345477_+	response regulator	NA	NA	NA	NA	NA
WP_010931421.1|3345832_3346504_+	SOS response-associated peptidase	NA	Q5QF62	Pseudomonas_virus	39.9	4.7e-36
WP_010931422.1|3346832_3347054_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010926433.1|3347053_3347335_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931423.1|3347331_3347847_-	DUF2514 family protein	NA	NA	NA	NA	NA
WP_010931424.1|3347846_3348398_-	lysozyme	NA	NA	NA	NA	NA
WP_010931425.1|3348376_3348619_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931426.1|3348623_3349436_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010926428.1|3349435_3349699_-	hypothetical protein	NA	NA	NA	NA	NA
WP_124740660.1|3349739_3349937_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931428.1|3349917_3350334_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931429.1|3350338_3354295_-	DUF1983 domain-containing protein	NA	A0A0B5A1N2	Achromobacter_phage	40.8	3.9e-215
WP_010931430.1|3354287_3354677_-	C40 family peptidase	NA	A0A0G3EYJ9	Achromobacter_phage	50.0	3.0e-35
WP_010931431.1|3354673_3355207_-	DUF1833 family protein	NA	A5A3Q9	Burkholderia_phage	46.9	1.1e-40
WP_010931432.1|3355274_3355634_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931433.1|3355643_3358256_-|tail	phage tail tape measure protein	tail	A0A2H4J107	uncultured_Caudovirales_phage	38.6	4.9e-105
WP_010931434.1|3358281_3358572_-	DUF1799 domain-containing protein	NA	A0A2H4JBP7	uncultured_Caudovirales_phage	45.2	3.7e-14
WP_003813412.1|3358589_3358919_-|tail	phage tail assembly chaperone	tail	A0A2H4J121	uncultured_Caudovirales_phage	44.0	2.9e-15
WP_010931435.1|3358928_3359447_-|tail	phage tail protein	tail	A0A1S5R1H0	Pseudomonas_phage	38.3	5.4e-24
WP_010931436.1|3359701_3360202_-	HNH endonuclease	NA	A0A1I9SEX5	Klebsiella_phage	45.1	4.4e-31
WP_010931437.1|3360209_3360632_-	DUF4128 domain-containing protein	NA	NA	NA	NA	NA
WP_010931438.1|3360628_3361027_-	hypothetical protein	NA	I6PCW1	Cronobacter_phage	38.0	4.2e-16
WP_010931439.1|3361023_3361419_-	hypothetical protein	NA	A0A2D2W284	Stenotrophomonas_phage	35.0	7.8e-07
WP_162096760.1|3361418_3361607_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247789.1|3361620_3362103_-	hypothetical protein	NA	A0A2H4JE38	uncultured_Caudovirales_phage	37.1	1.8e-13
WP_010931442.1|3362165_3362417_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012808.1|3363091_3364042_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931443.1|3364470_3365073_-	hypothetical protein	NA	R9TF81	Synechococcus_phage	43.6	7.9e-27
WP_010931444.1|3365195_3365438_-	hypothetical protein	NA	A0A0H5AUE5	Pseudomonas_phage	53.2	5.6e-16
WP_010931445.1|3365443_3366499_-	hypothetical protein	NA	A0A0H5BBX3	Pseudomonas_phage	50.6	2.6e-97
WP_010931446.1|3366527_3367946_-	DUF4055 domain-containing protein	NA	R9TF43	Synechococcus_phage	42.1	2.2e-99
WP_010931447.1|3367948_3369226_-|terminase	terminase	terminase	A0A1B1P9C9	Acinetobacter_phage	64.7	2.4e-150
WP_019247942.1|3369212_3369698_-|transposase	transposase	transposase	C7U0W1	Enterobacteria_phage	61.5	7.3e-39
WP_005012067.1|3370337_3371288_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_161633094.1|3371544_3372234_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023853179.1|3372226_3372478_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010931451.1|3373032_3373644_+	S24 family peptidase	NA	NA	NA	NA	NA
WP_019247378.1|3373715_3373922_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|3374173_3375124_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930048.1|3375222_3376173_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019248926.1|3376271_3377345_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931475.1|3377512_3378307_+	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010925795.1|3378346_3378871_-	DUF934 domain-containing protein	NA	NA	NA	NA	NA
WP_010931474.1|3378863_3380606_-	nitrite/sulfite reductase	NA	NA	NA	NA	NA
WP_010931473.1|3380815_3381574_-	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	24.4	4.4e-14
WP_010931472.1|3381576_3382284_-	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	25.4	8.2e-07
WP_010931471.1|3382300_3383182_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_019247734.1|3383192_3383951_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_019248554.1|3383919_3384675_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931468.1|3384744_3386163_+	amidase	NA	NA	NA	NA	NA
WP_003819076.1|3386184_3386835_-	carbonic anhydrase	NA	NA	NA	NA	NA
WP_033446132.1|3386968_3387304_-	ASCH domain-containing protein	NA	NA	NA	NA	NA
WP_010930800.1|3387392_3388343_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931467.1|3388419_3390240_+	DNA helicase RecQ	NA	L7RCS0	Acanthamoeba_polyphaga_moumouvirus	35.3	3.1e-74
WP_010931466.1|3390244_3391318_-	Holliday junction branch migration DNA helicase RuvB	NA	A0A127AWE7	Bacillus_phage	25.7	2.3e-08
WP_003814230.1|3391440_3392409_+	threo-3-hydroxy-L-aspartate ammonia-lyase	NA	NA	NA	NA	NA
WP_010927008.1|3392482_3393394_+	complex I NDUFA9 subunit family protein	NA	NA	NA	NA	NA
WP_003814226.1|3393412_3393985_-	Holliday junction branch migration protein RuvA	NA	NA	NA	NA	NA
WP_010931465.1|3394065_3394614_-	crossover junction endodeoxyribonuclease RuvC	NA	NA	NA	NA	NA
WP_010931464.1|3394613_3396203_-	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase	NA	Q58MG4	Prochlorococcus_phage	47.2	8.7e-65
WP_003814221.1|3396272_3396512_-	DNA-binding protein	NA	NA	NA	NA	NA
WP_023995141.1|3396552_3397578_-|tRNA	tRNA dihydrouridine synthase DusB	tRNA	NA	NA	NA	NA
WP_003814217.1|3397643_3398825_-	UbiH/UbiF/VisC/COQ6 family ubiquinone biosynthesis hydroxylase	NA	NA	NA	NA	NA
WP_010931463.1|3398921_3399374_+	membrane protein	NA	NA	NA	NA	NA
WP_010931462.1|3399383_3400724_-	aminopeptidase P N-terminal domain-containing protein	NA	NA	NA	NA	NA
WP_010931461.1|3401040_3402078_+	sodium:calcium antiporter	NA	NA	NA	NA	NA
WP_003814209.1|3402459_3402819_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005015810.1|3403004_3403955_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_041166340.1|3403951_3404893_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_076879617.1|3404967_3405918_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814206.1|3406211_3407306_+	porin	NA	NA	NA	NA	NA
WP_003814205.1|3407387_3408269_+	cytochrome c oxidase assembly protein	NA	NA	NA	NA	NA
WP_003814203.1|3408290_3409130_-	UTP--glucose-1-phosphate uridylyltransferase GalU	NA	A0A127AW70	Bacillus_phage	48.9	1.1e-66
WP_010931459.1|3409205_3410723_+|protease	M48 family metalloprotease	protease	NA	NA	NA	NA
WP_010931458.1|3410819_3411920_-	alpha/beta fold hydrolase	NA	NA	NA	NA	NA
WP_010931457.1|3411936_3412359_-	nuclear transport factor 2 family protein	NA	NA	NA	NA	NA
WP_003814195.1|3412381_3412594_-	zinc-finger domain-containing protein	NA	NA	NA	NA	NA
WP_010931456.1|3412640_3413561_-	branched-chain amino acid transaminase	NA	NA	NA	NA	NA
WP_010931455.1|3413743_3414493_+	AzlC family ABC transporter permease	NA	NA	NA	NA	NA
WP_003814188.1|3414495_3414825_+	AzlD domain-containing protein	NA	NA	NA	NA	NA
WP_010931454.1|3415031_3416465_+	DEAD/DEAH box helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	34.4	1.5e-52
WP_003814185.1|3416476_3416860_-	thioredoxin family protein	NA	NA	NA	NA	NA
WP_010931453.1|3416921_3417722_+	EI24 domain-containing protein	NA	NA	NA	NA	NA
WP_005015810.1|3417820_3418771_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 29
NZ_CP010249	Bordetella pertussis strain H564 chromosome, complete genome	4109554	3579438	3626287	4109554	transposase	Lake_Baikal_phage(25.0%)	39	NA	NA
WP_005012067.1|3579438_3580389_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929827.1|3580505_3581573_+	linear amide C-N hydrolase	NA	NA	NA	NA	NA
WP_019247670.1|3581648_3584777_-	Rne/Rng family ribonuclease	NA	NA	NA	NA	NA
WP_023853155.1|3585284_3586250_+	RluA family pseudouridine synthase	NA	NA	NA	NA	NA
WP_010929830.1|3586252_3586924_+	HAD family hydrolase	NA	NA	NA	NA	NA
WP_010929831.1|3587080_3588040_+	protein-methionine-sulfoxide reductase catalytic subunit MsrP	NA	NA	NA	NA	NA
WP_003821340.1|3588047_3588710_+	protein-methionine-sulfoxide reductase heme-binding subunit MsrQ	NA	NA	NA	NA	NA
WP_005013747.1|3588706_3589657_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|3589755_3590706_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_062826661.1|3590827_3592081_+	CoA transferase	NA	NA	NA	NA	NA
WP_010929805.1|3592058_3593021_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929804.1|3593152_3593647_+	MaoC family dehydratase	NA	NA	NA	NA	NA
WP_010929803.1|3593646_3594879_+	CoA transferase	NA	NA	NA	NA	NA
WP_019247316.1|3595624_3595906_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929802.1|3595892_3596879_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929801.1|3597022_3597427_+	RidA family protein	NA	NA	NA	NA	NA
WP_010929800.1|3597568_3600955_+	molybdopterin-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010929799.1|3600985_3602449_+	short-chain fatty acid transporter	NA	NA	NA	NA	NA
WP_019248869.1|3602469_3604086_+	L-glutamate gamma-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
WP_010929797.1|3604171_3604831_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929796.1|3604860_3605301_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929795.1|3605811_3606015_+	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	58.2	5.8e-14
WP_010929794.1|3606190_3607096_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929577.1|3607194_3608145_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|3608243_3609194_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814674.1|3610975_3612169_-	acetyl-CoA C-acyltransferase	NA	NA	NA	NA	NA
WP_010929793.1|3612234_3613263_-	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_019247419.1|3613289_3614462_-	acyl-CoA dehydrogenase family protein	NA	NA	NA	NA	NA
WP_003814681.1|3614587_3615565_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814685.1|3615575_3616547_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929791.1|3616613_3617399_-	crotonase/enoyl-CoA hydratase family protein	NA	NA	NA	NA	NA
WP_003814691.1|3617391_3618624_-	CoA transferase	NA	NA	NA	NA	NA
WP_003814694.1|3618819_3619575_-	TerC family protein	NA	A0A0R6PEZ3	Moraxella_phage	40.8	2.9e-42
WP_010929789.1|3619685_3620204_+	MgtC/SapB family protein	NA	G3MA03	Bacillus_virus	38.9	2.1e-12
WP_010929788.1|3621992_3623393_+	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
WP_003820700.1|3623492_3623837_+	TIGR01244 family phosphatase	NA	NA	NA	NA	NA
WP_003814701.1|3623925_3624396_+	universal stress protein	NA	NA	NA	NA	NA
WP_019247421.1|3624806_3625205_+	GTP-binding protein	NA	E4ZFJ7	Streptococcus_phage	44.3	9.0e-19
WP_010929577.1|3625336_3626287_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 31
NZ_CP010249	Bordetella pertussis strain H564 chromosome, complete genome	4109554	4030676	4073534	4109554	transposase	Planktothrix_phage(50.0%)	35	NA	NA
WP_010931661.1|4030676_4031627_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931662.1|4031796_4033023_+	bifunctional glutamate N-acetyltransferase/amino-acid acetyltransferase ArgJ	NA	NA	NA	NA	NA
WP_010931663.1|4033222_4034089_+	ATP-binding protein	NA	NA	NA	NA	NA
WP_003815027.1|4034081_4035044_+	Nudix family hydrolase	NA	A0A221LFJ1	Barns_Ness_breadcrumb_sponge_sobemo-like_virus	53.4	1.9e-06
WP_010927663.1|4035144_4036095_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|4036193_4037144_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929577.1|4037242_4038193_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994937.1|4038189_4039683_-	efflux transporter outer membrane subunit	NA	NA	NA	NA	NA
WP_003815032.1|4039679_4042787_-	multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_010931665.1|4042783_4045852_-	MdtB/MuxB family multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_010931666.1|4045848_4047099_-	MdtA/MuxA family multidrug efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
WP_003815038.1|4047279_4048041_-	cell division protein ZapD	NA	NA	NA	NA	NA
WP_019247320.1|4048073_4048724_-	dephospho-CoA kinase	NA	NA	NA	NA	NA
WP_003820519.1|4048726_4049566_-	prepilin peptidase	NA	NA	NA	NA	NA
WP_003815047.1|4049806_4050550_+	copper resistance protein NlpE N-terminal domain-containing protein	NA	NA	NA	NA	NA
WP_003815049.1|4050632_4050980_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003815051.1|4051077_4051920_-	pantoate--beta-alanine ligase	NA	NA	NA	NA	NA
WP_003815053.1|4051964_4052852_-	segregation/condensation protein A	NA	NA	NA	NA	NA
WP_003815055.1|4052878_4053067_-	DUF3460 family protein	NA	NA	NA	NA	NA
WP_010931669.1|4053164_4054622_+	DHA2 family efflux MFS transporter permease subunit	NA	NA	NA	NA	NA
WP_010931670.1|4054608_4056135_+	glycerol kinase GlpK	NA	NA	NA	NA	NA
WP_003815061.1|4056153_4056621_-	CopD family protein	NA	NA	NA	NA	NA
WP_010931671.1|4056620_4057643_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_169507388.1|4057763_4058483_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	39.9	4.7e-34
WP_003815066.1|4058558_4059659_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003815068.1|4059660_4060851_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003815070.1|4060970_4061987_-	amino acid ABC transporter substrate-binding protein	NA	A0A1B1IT51	uncultured_Mediterranean_phage	42.1	1.0e-71
WP_003815073.1|4062305_4062977_+	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	38.2	9.5e-29
WP_010927126.1|4062973_4063882_+	FtsX-like permease family protein	NA	NA	NA	NA	NA
WP_010931672.1|4064093_4064741_+	chemoreceptor glutamine deamidase CheD	NA	NA	NA	NA	NA
WP_010931673.1|4068592_4069669_+	A/G-specific adenine glycosylase	NA	NA	NA	NA	NA
WP_003815084.1|4069679_4070489_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003815086.1|4070578_4071352_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_005012067.1|4071534_4072485_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930363.1|4072583_4073534_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
