The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP010964	Bordetella pertussis strain E476 chromosome, complete genome	4102978	0	59497	4102978	transposase,tRNA	Natrialba_phage(12.5%)	52	NA	NA
WP_010929569.1|0_1920_+|tRNA	tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG	tRNA	NA	NA	NA	NA
WP_003806878.1|1916_2609_+	16S rRNA (guanine(527)-N(7))-methyltransferase RsmG	NA	NA	NA	NA	NA
WP_003806879.1|2605_3403_+	ParA family protein	NA	Q8JL10	Natrialba_phage	34.9	5.6e-20
WP_010929570.1|3409_4171_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_010929571.1|4214_5132_+	ParB/RepB/Spo0J family partition protein	NA	I3NLC2	Bifidobacterium_phage	38.1	1.9e-16
WP_019247667.1|5124_5910_+	asparaginase	NA	NA	NA	NA	NA
WP_019247666.1|5943_6126_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003806883.1|6721_7912_+	elongation factor Tu	NA	A0A1V0SLW6	Klosneuvirus	29.2	3.1e-14
WP_003806884.1|8150_8531_+	preprotein translocase subunit SecE	NA	NA	NA	NA	NA
WP_003806885.1|8540_9074_+	transcription termination/antitermination protein NusG	NA	G3MAW2	Bacillus_virus	30.5	1.4e-11
WP_010929572.1|9137_9569_+	50S ribosomal protein L11	NA	NA	NA	NA	NA
WP_003806887.1|9571_10270_+	50S ribosomal protein L1	NA	NA	NA	NA	NA
WP_003806888.1|10512_11037_+	50S ribosomal protein L10	NA	NA	NA	NA	NA
WP_003806889.1|11118_11502_+	50S ribosomal protein L7/L12	NA	NA	NA	NA	NA
WP_010929573.1|11661_15774_+	DNA-directed RNA polymerase subunit beta	NA	A0A0N9R0J7	Chrysochromulina_ericina_virus	28.8	2.4e-21
WP_003818292.1|15773_20018_+	DNA-directed RNA polymerase subunit beta'	NA	A0A2I7QNZ7	Vibrio_phage	24.7	3.5e-68
WP_010929574.1|20126_20531_-	TssQ family T6SS-associated lipoprotein	NA	NA	NA	NA	NA
WP_010929575.1|20771_21947_+	membrane protein	NA	NA	NA	NA	NA
WP_010929576.1|24352_25459_-	FecR domain-containing protein	NA	NA	NA	NA	NA
WP_003818297.1|26470_27286_+	response regulator transcription factor	NA	NA	NA	NA	NA
WP_010929577.1|27282_28233_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023995007.1|28314_28650_-	CoA transferase	NA	NA	NA	NA	NA
WP_010929578.1|28674_29109_-	OB-fold domain-containing protein	NA	NA	NA	NA	NA
WP_019247164.1|29141_30359_-	thiolase family protein	NA	NA	NA	NA	NA
WP_010929580.1|30364_30862_-	MaoC family dehydratase	NA	NA	NA	NA	NA
WP_019247165.1|31069_32005_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929582.1|32214_33006_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010929583.1|33048_34470_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_010929584.1|34625_35576_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814398.1|35572_36763_-	MFS transporter	NA	NA	NA	NA	NA
WP_010929585.1|37012_37924_+|tRNA	glycine--tRNA ligase subunit alpha	tRNA	NA	NA	NA	NA
WP_010929586.1|37925_40064_+|tRNA	glycine--tRNA ligase subunit beta	tRNA	NA	NA	NA	NA
WP_003814404.1|40060_40600_+	D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase	NA	NA	NA	NA	NA
WP_003814405.1|40603_41332_+	1-acyl-sn-glycerol-3-phosphate acyltransferase	NA	NA	NA	NA	NA
WP_010929587.1|41318_42212_+	M48 family metallopeptidase	NA	NA	NA	NA	NA
WP_003814410.1|42282_42678_+	lactoylglutathione lyase	NA	NA	NA	NA	NA
WP_003814412.1|42687_43218_+	peptide deformylase	NA	E3SLL2	Synechococcus_phage	35.4	3.7e-12
WP_005013747.1|43663_44614_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929588.1|44712_45663_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929589.1|46249_46798_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815265.1|46769_47006_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003815255.1|47133_48027_+	AEC family transporter	NA	NA	NA	NA	NA
WP_010929590.1|49196_50444_+	homoserine O-acetyltransferase	NA	NA	NA	NA	NA
WP_003817748.1|50440_51055_+	methionine biosynthesis protein MetW	NA	NA	NA	NA	NA
WP_010929591.1|51190_52141_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_029443813.1|52183_53440_+	muropeptide transporter	NA	NA	NA	NA	NA
WP_010929592.1|54671_55406_-	aspartate/glutamate racemase family protein	NA	NA	NA	NA	NA
WP_019247224.1|55411_56002_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.6	3.2e-20
WP_003817737.1|56026_56716_-	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_023852650.1|56712_57474_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010929594.1|57553_58453_-	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_005012808.1|58546_59497_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 2
NZ_CP010964	Bordetella pertussis strain E476 chromosome, complete genome	4102978	70134	124171	4102978	transposase,tRNA	Planktothrix_phage(20.0%)	52	NA	NA
WP_005012808.1|70134_71085_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003816713.1|71178_71493_+	DUF1153 domain-containing protein	NA	NA	NA	NA	NA
WP_010929604.1|72685_74593_+	molecular chaperone HtpG	NA	A0A1B1ISV4	uncultured_Mediterranean_phage	37.2	1.1e-117
WP_010929605.1|74754_75375_-	glutathione S-transferase	NA	NA	NA	NA	NA
WP_003807804.1|75406_75988_-	1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD	NA	A0A1W6DX33	Sphingobium_phage	54.3	1.7e-05
WP_003807805.1|76076_76328_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929606.1|76329_77172_-	cytochrome c biogenesis protein CcsA	NA	NA	NA	NA	NA
WP_010929607.1|77277_78687_+	signal recognition particle protein	NA	NA	NA	NA	NA
WP_005012067.1|78683_79634_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_041166334.1|79708_80653_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929608.1|80649_82524_-	polysaccharide biosynthesis protein	NA	A0A2P1ELS8	Moumouvirus	26.9	2.0e-23
WP_003807102.1|83871_84576_-	DUF2837 family protein	NA	NA	NA	NA	NA
WP_003807104.1|84572_85679_-	glycosyltransferase family 4 protein	NA	NA	NA	NA	NA
WP_010929610.1|85940_86534_-	sugar transferase	NA	NA	NA	NA	NA
WP_023853419.1|86530_87718_-	DegT/DnrJ/EryC1/StrS family aminotransferase	NA	NA	NA	NA	NA
WP_010929612.1|87780_89040_-	glycosyltransferase family 4 protein	NA	NA	NA	NA	NA
WP_010929613.1|89063_90152_-	UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing)	NA	A0A0N9R0B2	Chrysochromulina_ericina_virus	36.3	4.8e-46
WP_010929614.1|90159_91260_-	DegT/DnrJ/EryC1/StrS family aminotransferase	NA	A0A2K9L0G1	Tupanvirus	29.7	3.3e-31
WP_003807114.1|91263_91839_-	N-acetyltransferase	NA	NA	NA	NA	NA
WP_003807115.1|91842_92895_-	Gfo/Idh/MocA family oxidoreductase	NA	NA	NA	NA	NA
WP_010929615.1|93025_94033_+	lipopolysaccharide heptosyltransferase I	NA	NA	NA	NA	NA
WP_010929616.1|94034_95321_+	3-deoxy-D-manno-octulosonic acid transferase	NA	NA	NA	NA	NA
WP_003807124.1|95337_95493_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929617.1|95517_96321_-	type III pantothenate kinase	NA	NA	NA	NA	NA
WP_010929618.1|96317_97184_-	biotin--[acetyl-CoA-carboxylase] ligase	NA	NA	NA	NA	NA
WP_010929619.1|97258_98389_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_003807131.1|98388_99228_+	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	32.4	9.1e-21
WP_010929620.1|100160_100763_+	membrane integrity-associated transporter subunit PqiC	NA	NA	NA	NA	NA
WP_010929621.1|100792_101446_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003807138.1|101578_102835_+	D-alanyl-D-alanine carboxypeptidase	NA	B6DZZ7	Stx2-converting_phage	40.5	6.2e-66
WP_010929622.1|102882_103782_+	D-amino acid aminotransferase	NA	NA	NA	NA	NA
WP_003818417.1|103857_104133_+	YbeD family protein	NA	NA	NA	NA	NA
WP_010929623.1|104140_104803_+	lipoyl(octanoyl) transferase LipB	NA	NA	NA	NA	NA
WP_003807146.1|104864_105866_+	lipoyl synthase	NA	NA	NA	NA	NA
WP_003807148.1|105880_106429_-	dTDP-4-dehydrorhamnose 3,5-epimerase	NA	A0A291LA62	Escherichia_phage	53.4	3.7e-47
WP_010929624.1|106486_107383_-	dTDP-4-dehydrorhamnose reductase	NA	NA	NA	NA	NA
WP_010929625.1|107379_108441_-	dTDP-glucose 4,6-dehydratase	NA	A0A1D7XFE8	Escherichia_phage	44.8	1.6e-78
WP_010929626.1|108476_109427_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929627.1|110326_111520_+	cystathionine beta-lyase	NA	NA	NA	NA	NA
WP_010929628.1|111601_112231_-	thiol:disulfide interchange protein DsbA/DsbL	NA	NA	NA	NA	NA
WP_010927242.1|112292_112976_-	SPOR domain-containing protein	NA	NA	NA	NA	NA
WP_023853376.1|112985_114668_-|tRNA	arginine--tRNA ligase	tRNA	NA	NA	NA	NA
WP_003815933.1|114955_115303_+	DUF1840 domain-containing protein	NA	NA	NA	NA	NA
WP_003815930.1|115393_115711_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929632.1|115993_117010_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003815929.1|117085_117886_-	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
WP_003815927.1|117882_118758_-	sugar ABC transporter permease	NA	NA	NA	NA	NA
WP_010929633.1|118768_120061_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929634.1|120103_121144_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.7	6.0e-22
WP_010929635.1|121249_122071_-	phosphodiesterase	NA	NA	NA	NA	NA
WP_005012067.1|122171_123122_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|123220_124171_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 3
NZ_CP010964	Bordetella pertussis strain E476 chromosome, complete genome	4102978	137255	209777	4102978	transposase,tRNA	Bacillus_phage(16.67%)	58	NA	NA
WP_005012067.1|137255_138206_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003815155.1|138624_140133_-	threonine ammonia-lyase, biosynthetic	NA	NA	NA	NA	NA
WP_019247146.1|140879_144842_+	FAD/FMN-binding oxidoreductase	NA	NA	NA	NA	NA
WP_010929644.1|144894_145677_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929645.1|145764_146988_-	CoA transferase	NA	NA	NA	NA	NA
WP_010929646.1|146971_147904_-	alpha/beta hydrolase fold domain-containing protein	NA	NA	NA	NA	NA
WP_003817676.1|147909_148722_-	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_010929647.1|150033_151005_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003815135.1|151123_151906_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929648.1|152672_153653_-	biotin-dependent carboxyltransferase	NA	NA	NA	NA	NA
WP_010929649.1|153649_154378_-	5-oxoprolinase subunit PxpB	NA	NA	NA	NA	NA
WP_003815126.1|154402_154834_-	VOC family protein	NA	NA	NA	NA	NA
WP_010929650.1|154935_155811_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_023853237.1|155862_157062_-	phosphoglycerate dehydrogenase	NA	A0A1V0SBV6	Catovirus	42.6	3.1e-91
WP_010929652.1|157166_157628_-	DUF411 domain-containing protein	NA	NA	NA	NA	NA
WP_010929653.1|157733_159131_-	heavy metal sensor histidine kinase	NA	NA	NA	NA	NA
WP_010929654.1|159127_159805_-	heavy metal response regulator transcription factor	NA	W8CYM9	Bacillus_phage	35.2	1.5e-29
WP_010929655.1|159860_161171_-	phosphate regulon sensor histidine kinase PhoR	NA	A0A1V0SGX0	Hokovirus	25.5	6.2e-16
WP_003815113.1|161182_161881_-	phosphate regulon transcriptional regulator PhoB	NA	W8CYM9	Bacillus_phage	37.1	8.6e-33
WP_003815111.1|162044_162821_+	bifunctional demethylmenaquinone methyltransferase/2-methoxy-6-polyprenyl-1,4-benzoquinol methylase UbiE	NA	NA	NA	NA	NA
WP_010929656.1|162986_164009_+	Tim44 domain-containing protein	NA	NA	NA	NA	NA
WP_023853232.1|164237_164873_+	SCP2 sterol-binding domain-containing protein	NA	NA	NA	NA	NA
WP_010929658.1|164869_166432_+	ubiquinone biosynthesis regulatory protein kinase UbiB	NA	A0A2N9QVT9	Dishui_lake_phycodnavirus	28.7	1.0e-33
WP_005015810.1|166990_167941_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929659.1|169384_170287_-	YgcG family protein	NA	NA	NA	NA	NA
WP_003815889.1|170264_170894_-	LemA family protein	NA	NA	NA	NA	NA
WP_010929660.1|171176_172607_+	DEAD/DEAH box helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	29.8	5.8e-44
WP_010929661.1|172640_173270_+	LysE family transporter	NA	NA	NA	NA	NA
WP_003815895.1|173318_174926_+	peptide chain release factor 3	NA	A0A2K9L6L3	Tupanvirus	37.8	9.3e-14
WP_010929663.1|174950_175634_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815898.1|175715_176192_-	bacterioferritin	NA	NA	NA	NA	NA
WP_005012067.1|176398_177349_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929664.1|178464_178992_+	META domain-containing protein	NA	NA	NA	NA	NA
WP_010929665.1|179083_179899_+	META and DUF4377 domain-containing protein	NA	NA	NA	NA	NA
WP_003808370.1|179959_180694_+	sulfurtransferase	NA	NA	NA	NA	NA
WP_010929666.1|180731_182810_-|tRNA	methionine--tRNA ligase	tRNA	A0A1V0SHR2	Klosneuvirus	23.6	1.5e-27
WP_003808374.1|183059_183332_-	hypothetical protein	NA	NA	NA	NA	NA
WP_033446322.1|183433_184519_+	iron-sulfur cluster carrier protein ApbC	NA	NA	NA	NA	NA
WP_010929668.1|184522_186427_+	BamA/TamA family outer membrane protein	NA	NA	NA	NA	NA
WP_010929669.1|186423_190122_+	translocation/assembly module TamB domain-containing protein	NA	NA	NA	NA	NA
WP_010929670.1|190182_190746_+	dCTP deaminase	NA	S5VM63	Pseudomonas_phage	75.3	2.6e-72
WP_003808385.1|190753_191176_-	VOC family protein	NA	NA	NA	NA	NA
WP_010929671.1|191203_191623_-	VOC family protein	NA	NA	NA	NA	NA
WP_076879599.1|191651_192125_-	GNAT family N-acetyltransferase	NA	Q9AZG4	Lactococcus_phage	31.1	2.2e-11
WP_003808391.1|192224_192722_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003808393.1|192876_195147_+	arginine/lysine/ornithine decarboxylase	NA	NA	NA	NA	NA
WP_010929672.1|195195_196428_+	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_005012067.1|196526_197477_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929673.1|197579_198215_+	superoxide dismutase	NA	Q56AR7	Bacillus_thuringiensis_phage	73.8	2.8e-83
WP_010929674.1|198211_199105_+	ZIP family metal transporter	NA	NA	NA	NA	NA
WP_010929675.1|199499_200600_+	glycine cleavage system aminomethyltransferase GcvT	NA	NA	NA	NA	NA
WP_010929676.1|200681_201056_+	glycine cleavage system protein GcvH	NA	NA	NA	NA	NA
WP_010929677.1|201115_203980_+	aminomethyl-transferring glycine dehydrogenase	NA	E3SN07	Prochlorococcus_phage	51.4	1.2e-261
WP_010929678.1|204124_204865_-	FadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929679.1|204934_206146_+	CoA transferase	NA	NA	NA	NA	NA
WP_010929680.1|206174_207143_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_005013747.1|207756_208707_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|208826_209777_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 4
NZ_CP010964	Bordetella pertussis strain E476 chromosome, complete genome	4102978	217709	280347	4102978	protease,transposase,tRNA	uncultured_Caudovirales_phage(22.22%)	52	NA	NA
WP_010929686.1|217709_218660_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012808.1|218758_219709_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929687.1|219733_220633_-	virginiamycin B lyase	NA	NA	NA	NA	NA
WP_010929688.1|220787_221336_+	N-acetyltransferase	NA	A0A2H4J136	uncultured_Caudovirales_phage	41.7	1.2e-21
WP_010929689.1|221374_222094_-	7-cyano-7-deazaguanine synthase QueC	NA	A0A0A0RPC6	Escherichia_phage	43.9	8.0e-50
WP_010929690.1|222165_225108_+	phosphoenolpyruvate carboxylase	NA	NA	NA	NA	NA
WP_033446404.1|225701_228497_+|protease	serine protease autotransporter SphB1	protease	NA	NA	NA	NA
WP_010929692.1|228954_229887_+	3-hydroxyacyl-CoA dehydrogenase family protein	NA	NA	NA	NA	NA
WP_010929693.1|229998_231348_+	short-chain fatty acid transporter	NA	NA	NA	NA	NA
WP_010929694.1|231379_232105_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010929695.1|232155_233007_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929696.1|233136_233823_+	3-oxoacid CoA-transferase subunit A	NA	NA	NA	NA	NA
WP_003819086.1|233822_234467_+	CoA transferase subunit B	NA	NA	NA	NA	NA
WP_003807674.1|234523_234799_+	muconolactone Delta-isomerase	NA	NA	NA	NA	NA
WP_003807672.1|234824_235121_+	YciI family protein	NA	NA	NA	NA	NA
WP_010929697.1|235166_235946_+	3-oxoadipate enol-lactonase	NA	NA	NA	NA	NA
WP_023853200.1|235951_236992_+	cyclase family protein	NA	NA	NA	NA	NA
WP_010929699.1|237096_237420_-	phosphate starvation-inducible protein	NA	NA	NA	NA	NA
WP_005013747.1|237576_238527_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929700.1|238625_239423_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_003814363.1|240372_240783_+	carboxymuconolactone decarboxylase family protein	NA	NA	NA	NA	NA
WP_003814358.1|241804_242548_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814356.1|242591_243635_-	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003814355.1|243805_245908_+	TRAP transporter large permease subunit	NA	NA	NA	NA	NA
WP_003814351.1|247318_248275_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929701.1|248293_248785_-	2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase	NA	NA	NA	NA	NA
WP_010929702.1|248781_250137_-	polynucleotide adenylyltransferase PcnB	NA	A0A1B1IVF3	uncultured_Mediterranean_phage	36.8	3.4e-25
WP_010929703.1|250137_250836_-	HAD-IB family hydrolase	NA	NA	NA	NA	NA
WP_010929704.1|250832_251534_-	DnaA regulatory inactivator Hda	NA	NA	NA	NA	NA
WP_003814339.1|251786_252836_+	phosphoribosylformylglycinamidine cyclo-ligase	NA	Q58MH8	Prochlorococcus_phage	43.6	5.6e-68
WP_003814337.1|252941_253883_-|tRNA	tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA	tRNA	NA	NA	NA	NA
WP_010929705.1|253879_255769_-	DNA mismatch repair endonuclease MutL	NA	A0A1B2LRQ5	Wolbachia_phage	32.8	3.3e-79
WP_003814332.1|255855_256494_+	VTT domain-containing protein	NA	NA	NA	NA	NA
WP_019247543.1|256636_258022_-	N-acetylmuramoyl-L-alanine amidase	NA	A0A2H4JCM7	uncultured_Caudovirales_phage	30.3	4.5e-17
WP_010929706.1|257952_258489_-|tRNA	bifunctional alanine racemase/tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE	tRNA	NA	NA	NA	NA
WP_010929707.1|258640_260032_+	class II fumarate hydratase	NA	NA	NA	NA	NA
WP_010929708.1|260048_261029_-	AEC family transporter	NA	NA	NA	NA	NA
WP_003814324.1|261164_262148_+	tripartite tricarboxylate transporter substrate binding protein BugE	NA	NA	NA	NA	NA
WP_010929709.1|262212_263112_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814321.1|263218_264973_+	gamma-glutamyltransferase	NA	NA	NA	NA	NA
WP_010929710.1|264980_266105_-	CoA transferase	NA	NA	NA	NA	NA
WP_010929711.1|266118_267099_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_005012067.1|267829_268780_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929712.1|269339_269885_+	GbsR/MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929713.1|269968_271588_+	cytochrome d ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
WP_004567834.1|271603_272758_+	cytochrome d ubiquinol oxidase subunit II	NA	NA	NA	NA	NA
WP_003817696.1|272771_272897_+	cytochrome bd-I oxidase subunit CydX	NA	NA	NA	NA	NA
WP_010929714.1|272893_274645_+	thiol reductant ABC exporter subunit CydD	NA	W8CYL7	Bacillus_phage	23.8	3.4e-09
WP_010929715.1|274641_276321_+	thiol reductant ABC exporter subunit CydC	NA	W8CYL7	Bacillus_phage	27.6	3.6e-16
WP_010929716.1|276383_276932_+	adenine phosphoribosyltransferase	NA	A0A1V0SKE5	Klosneuvirus	43.1	1.3e-28
WP_010929717.1|278074_278353_+	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|279396_280347_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 5
NZ_CP010964	Bordetella pertussis strain E476 chromosome, complete genome	4102978	393114	526137	4102978	transposase,integrase	Bacillus_virus(13.64%)	109	456122:456139	531644:531661
WP_005012067.1|393114_394065_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_047122777.1|394153_395068_+	DMT family transporter	NA	NA	NA	NA	NA
WP_010929782.1|395064_395724_+	LysE family translocator	NA	NA	NA	NA	NA
WP_003814709.1|395813_396737_+	alpha/beta fold hydrolase	NA	A0A1C9C5K3	Heterosigma_akashiwo_virus	27.2	4.8e-07
WP_010929783.1|396742_397198_-	multidrug/biocide efflux PACE transporter	NA	NA	NA	NA	NA
WP_010929784.1|397194_398298_-	ChbG/HpnK family deacetylase	NA	NA	NA	NA	NA
WP_157734664.1|398253_398526_+	GtrA family protein	NA	NA	NA	NA	NA
WP_010927086.1|398485_400105_-	glycosyltransferase family 39 protein	NA	NA	NA	NA	NA
WP_003814720.1|400101_401160_-	glycosyltransferase family 2 protein	NA	I1TED8	Salmonella_phage	40.5	2.8e-59
WP_033446199.1|401289_401784_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_022997984.1|401876_402854_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929785.1|403049_404255_+	sodium/glutamate symporter	NA	NA	NA	NA	NA
WP_010929786.1|404251_405763_+	TAXI family TRAP transporter solute-binding subunit	NA	NA	NA	NA	NA
WP_003814726.1|405778_407092_-	short-chain fatty acid transporter	NA	NA	NA	NA	NA
WP_003814728.1|407282_407462_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003814730.1|407871_408606_-	DNA polymerase III subunit epsilon	NA	A0A1X9SH08	Bradyrhizobium_phage	43.8	1.4e-41
WP_010929577.1|411050_412001_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247421.1|412132_412531_-	GTP-binding protein	NA	E4ZFJ7	Streptococcus_phage	44.3	9.0e-19
WP_003814701.1|412941_413412_-	universal stress protein	NA	NA	NA	NA	NA
WP_003820700.1|413500_413845_-	TIGR01244 family phosphatase	NA	NA	NA	NA	NA
WP_010929788.1|413944_415345_-	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
WP_010929789.1|417133_417652_-	MgtC/SapB family protein	NA	G3MA03	Bacillus_virus	38.9	2.1e-12
WP_003814694.1|417762_418518_+	TerC family protein	NA	A0A0R6PEZ3	Moraxella_phage	40.8	2.9e-42
WP_010929790.1|418713_419946_+	CoA transferase	NA	NA	NA	NA	NA
WP_010929791.1|419938_420724_+	crotonase/enoyl-CoA hydratase family protein	NA	NA	NA	NA	NA
WP_003814685.1|420790_421762_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003814681.1|421772_422750_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247419.1|422875_424048_+	acyl-CoA dehydrogenase family protein	NA	NA	NA	NA	NA
WP_010929793.1|424074_425103_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_003814674.1|425168_426362_+	acetyl-CoA C-acyltransferase	NA	NA	NA	NA	NA
WP_005012067.1|428143_429094_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929794.1|429192_430098_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929795.1|430273_430477_-	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	58.2	5.8e-14
WP_010929796.1|430987_431428_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929797.1|431457_432117_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019248869.1|432202_433819_-	L-glutamate gamma-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
WP_010929799.1|433839_435303_-	short-chain fatty acid transporter	NA	NA	NA	NA	NA
WP_010929800.1|435333_438720_-	molybdopterin-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010929801.1|438861_439266_-	RidA family protein	NA	NA	NA	NA	NA
WP_010929802.1|439409_440396_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247316.1|440382_440664_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929803.1|441409_442642_-	CoA transferase	NA	NA	NA	NA	NA
WP_010929804.1|442641_443136_-	MaoC family dehydratase	NA	NA	NA	NA	NA
WP_010929805.1|443267_444230_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929806.1|444207_445461_-	CoA transferase	NA	NA	NA	NA	NA
WP_005013747.1|445582_446533_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|446631_447582_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003818201.1|448136_448511_-	MerR family DNA-binding transcriptional regulator	NA	NA	NA	NA	NA
WP_010929807.1|448585_449644_+	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
WP_005012067.1|449667_450618_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929808.1|453499_454669_+	acetyl-CoA C-acyltransferase	NA	NA	NA	NA	NA
WP_003815953.1|454769_456377_+	methylcrotonoyl-CoA carboxylase	NA	A0A1B2ITV7	Pike_perch_iridovirus	57.3	5.4e-22
456122:456139	attL	CAGCGTGCTGGCCACCGT	NA	NA	NA	NA
WP_010929810.1|456423_458445_+	acetyl/propionyl/methylcrotonyl-CoA carboxylase subunit alpha	NA	NA	NA	NA	NA
WP_003815955.1|458473_458719_-	DUF1653 domain-containing protein	NA	NA	NA	NA	NA
WP_004565905.1|458732_459923_-	acetylornithine transaminase	NA	A0A1V0SKB7	Klosneuvirus	26.7	4.4e-21
WP_010929811.1|460118_461084_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929812.1|461106_462246_-	DSD1 family PLP-dependent enzyme	NA	NA	NA	NA	NA
WP_010929813.1|462457_463420_+	TAXI family TRAP transporter solute-binding subunit	NA	NA	NA	NA	NA
WP_010929814.1|463543_465568_+	TRAP transporter permease	NA	NA	NA	NA	NA
WP_010929815.1|465764_468008_+	TonB-dependent hemoglobin/transferrin/lactoferrin family receptor	NA	NA	NA	NA	NA
WP_003815964.1|468286_468745_+	DUF494 domain-containing protein	NA	NA	NA	NA	NA
WP_010929816.1|469672_472294_-	GDYXXLXY domain-containing protein	NA	NA	NA	NA	NA
WP_010929817.1|472357_474985_+	DNA topoisomerase III	NA	A0A0G2YA05	Acanthamoeba_polyphaga_mimivirus	25.4	6.1e-23
WP_010929818.1|475136_476201_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_020699616.1|476200_476971_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	33.9	8.1e-24
WP_010929819.1|476979_477813_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_003818225.1|477825_478605_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010929820.1|478678_480112_+	aldehyde dehydrogenase family protein	NA	NA	NA	NA	NA
WP_010929821.1|480139_480898_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010929822.1|480953_482804_-	biosynthetic-type acetolactate synthase large subunit	NA	E4WLQ6	Ostreococcus_tauri_virus	30.4	2.2e-59
WP_010929823.1|482897_483374_+	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_023853391.1|483390_484311_-	bestrophin	NA	NA	NA	NA	NA
WP_003818232.1|484417_484918_+	SET domain-containing protein-lysine N-methyltransferase	NA	NA	NA	NA	NA
WP_010929826.1|485291_485984_+	3,4-dihydroxy-2-butanone-4-phosphate synthase	NA	A0A2H4PQS2	Staphylococcus_phage	41.6	6.3e-36
WP_005012067.1|486292_487243_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929827.1|487359_488427_+	linear amide C-N hydrolase	NA	NA	NA	NA	NA
WP_010929828.1|488502_491631_-	Rne/Rng family ribonuclease	NA	NA	NA	NA	NA
WP_023853155.1|492138_493104_+	RluA family pseudouridine synthase	NA	NA	NA	NA	NA
WP_010929830.1|493106_493778_+	HAD family hydrolase	NA	NA	NA	NA	NA
WP_010929831.1|493934_494894_+	protein-methionine-sulfoxide reductase catalytic subunit MsrP	NA	NA	NA	NA	NA
WP_003821340.1|494901_495564_+	protein-methionine-sulfoxide reductase heme-binding subunit MsrQ	NA	NA	NA	NA	NA
WP_005013747.1|495560_496511_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929833.1|498067_498913_-	AraC family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929834.1|499000_500164_-	alpha-hydroxy-acid oxidizing protein	NA	NA	NA	NA	NA
WP_010929835.1|500582_501554_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929836.1|501592_503020_-	amidase	NA	NA	NA	NA	NA
WP_023853625.1|503139_503931_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010929838.1|504049_506503_-	DNA topoisomerase (ATP-hydrolyzing) subunit B	NA	G3M9Z3	Bacillus_virus	34.8	2.3e-112
WP_010929839.1|506597_507707_-	DNA polymerase III subunit beta	NA	B4UTW9	Rhizobium_phage	32.6	1.2e-41
WP_010929554.1|507709_509119_-	chromosomal replication initiator protein DnaA	NA	NA	NA	NA	NA
WP_003816025.1|509524_509659_+	50S ribosomal protein L34	NA	NA	NA	NA	NA
WP_003816026.1|509754_510126_+	ribonuclease P protein component	NA	NA	NA	NA	NA
WP_003816027.1|510122_510395_+	membrane protein insertion efficiency factor YidD	NA	A0A2H4PQM5	Staphylococcus_phage	52.2	7.0e-15
WP_010927254.1|510443_512135_+	membrane protein insertase YidC	NA	NA	NA	NA	NA
WP_005012067.1|512365_513316_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929840.1|513773_514697_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814626.1|514705_515104_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929841.1|515345_517316_+	DUF3220 domain-containing protein	NA	NA	NA	NA	NA
WP_010929843.1|518802_519792_+|integrase	site-specific integrase	integrase	A0A1B1P9F9	Acinetobacter_phage	44.4	4.4e-75
WP_010926403.1|519788_519989_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010929845.1|520101_520443_-	hypothetical protein	NA	A0A0H5ARN8	Pseudomonas_phage	45.3	1.0e-10
WP_019247983.1|520453_521638_-	hypothetical protein	NA	A0A291L9X3	Bordetella_phage	37.8	1.5e-24
WP_010929847.1|521674_522202_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929848.1|522259_522907_-	YqaJ viral recombinase family protein	NA	A0A0U2BXF3	Paracoccus_phage	41.4	2.0e-31
WP_010929849.1|522903_523890_-	recombinase RecT	NA	H9C0R8	Aeromonas_phage	57.3	2.0e-67
WP_010926410.1|523893_524076_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010926411.1|524072_524450_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929850.1|524683_525151_-	hypothetical protein	NA	Q3HQX1	Burkholderia_phage	71.3	2.1e-43
WP_010929851.1|525186_526137_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
531644:531661	attR	ACGGTGGCCAGCACGCTG	NA	NA	NA	NA
>prophage 6
NZ_CP010964	Bordetella pertussis strain E476 chromosome, complete genome	4102978	655401	723716	4102978	transposase,tRNA	Acanthocystis_turfacea_Chlorella_virus(11.11%)	57	NA	NA
WP_005013747.1|655401_656352_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|656450_657401_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003815668.1|657397_657805_-	DUF126 domain-containing protein	NA	NA	NA	NA	NA
WP_019247835.1|657801_658470_-	DUF521 domain-containing protein	NA	NA	NA	NA	NA
WP_003815671.1|659088_660060_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003815672.1|660166_661129_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929934.1|661247_662969_+	D-lactate dehydrogenase	NA	NA	NA	NA	NA
WP_010929935.1|663012_664143_-	acyl-CoA dehydrogenase family protein	NA	NA	NA	NA	NA
WP_010929936.1|664156_665347_-	acyl-CoA dehydrogenase family protein	NA	NA	NA	NA	NA
WP_010929937.1|665527_666547_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929938.1|666679_667852_-	acetylornithine deacetylase	NA	NA	NA	NA	NA
WP_003815682.1|667844_668519_-	DUF1028 domain-containing protein	NA	NA	NA	NA	NA
WP_010929939.1|668529_668958_-	RidA family protein	NA	NA	NA	NA	NA
WP_003815690.1|668988_670263_-	NAD(P)-binding domain-containing protein	NA	NA	NA	NA	NA
WP_010929940.1|670627_671611_+	oxidoreductase	NA	NA	NA	NA	NA
WP_010929941.1|671694_672639_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929942.1|672786_674928_-	acetate--CoA ligase family protein	NA	NA	NA	NA	NA
WP_010929943.1|674927_675707_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003815697.1|676105_676999_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929944.1|677062_678082_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929945.1|678138_679119_+	NAD(P)-dependent oxidoreductase	NA	M1IDV7	Acanthocystis_turfacea_Chlorella_virus	29.5	7.6e-11
WP_010929946.1|679316_681149_-	glutamine--fructose-6-phosphate transaminase (isomerizing)	NA	A7IW18	Paramecium_bursaria_Chlorella_virus	48.1	4.3e-156
WP_010929947.1|681298_681787_+	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929948.1|681808_682993_-	acetyl-CoA C-acyltransferase	NA	NA	NA	NA	NA
WP_010929949.1|683022_685140_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010929950.1|685397_687200_+	DNA alkylation response protein	NA	NA	NA	NA	NA
WP_010929951.1|687281_688268_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929952.1|688319_690509_+	acetate--CoA ligase family protein	NA	NA	NA	NA	NA
WP_010929953.1|690505_691303_+	citryl-CoA lyase	NA	NA	NA	NA	NA
WP_010929954.1|691299_692136_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010929955.1|692155_694531_+	molybdopterin-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_005012067.1|694629_695580_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929956.1|695678_696629_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929957.1|697351_698626_+|tRNA	glutamyl-tRNA reductase	tRNA	NA	NA	NA	NA
WP_003807618.1|698712_699795_+	peptide chain release factor 1	NA	A0A0S4KWG0	Pseudomonas_phage	40.7	3.3e-07
WP_010929958.1|699805_700618_+	peptide chain release factor N(5)-glutamine methyltransferase	NA	NA	NA	NA	NA
WP_010929959.1|700654_700981_+	Grx4 family monothiol glutaredoxin	NA	NA	NA	NA	NA
WP_003807624.1|700985_701546_+	UbiX family flavin prenyltransferase	NA	NA	NA	NA	NA
WP_003819054.1|701786_702779_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929960.1|702797_703793_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_023853194.1|703808_705185_+	FAD binding domain-containing protein	NA	A0A0P0IVM8	Acinetobacter_phage	37.3	2.4e-18
WP_010929962.1|705177_707559_+	xanthine dehydrogenase family protein molybdopterin-binding subunit	NA	NA	NA	NA	NA
WP_019247263.1|707575_707965_+	SRPBCC family protein	NA	NA	NA	NA	NA
WP_020699695.1|708091_708322_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|708426_709377_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929963.1|709475_710426_-	septal ring lytic transglycosylase RlpA family protein	NA	F5B3X9	Synechococcus_phage	47.2	6.9e-17
WP_003815183.1|710422_711295_-	RNase adapter RapZ	NA	A0A1P8D5W0	Corynebacterium_phage	34.5	2.4e-08
WP_010929964.1|712225_713512_+	cytochrome c	NA	NA	NA	NA	NA
WP_010929965.1|713565_714492_-	HPr kinase/phosphorylase	NA	NA	NA	NA	NA
WP_010929966.1|714510_714966_-	PTS sugar transporter subunit IIA	NA	NA	NA	NA	NA
WP_003815177.1|715817_716609_-	LPS export ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	27.4	9.5e-20
WP_003815175.1|716640_717261_-	lipopolysaccharide transport periplasmic protein LptA	NA	NA	NA	NA	NA
WP_010929967.1|717257_717887_-	LPS export ABC transporter periplasmic protein LptC	NA	NA	NA	NA	NA
WP_003815172.1|717899_718508_-	HAD-IIIA family hydrolase	NA	E3T535	Cafeteria_roenbergensis_virus	26.1	5.2e-10
WP_003815171.1|718504_719494_-	KpsF/GutQ family sugar-phosphate isomerase	NA	A0A2P0VNK5	Tetraselmis_virus	37.7	4.3e-38
WP_010929968.1|719599_720814_+	formate-dependent phosphoribosylglycinamide formyltransferase	NA	NA	NA	NA	NA
WP_010929969.1|722765_723716_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 7
NZ_CP010964	Bordetella pertussis strain E476 chromosome, complete genome	4102978	813286	867417	4102978	holin,transposase	Ostreococcus_lucimarinus_virus(25.0%)	41	NA	NA
WP_005012067.1|813286_814237_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814007.1|815400_817116_+	acetolactate synthase 3 catalytic subunit	NA	A0A0P0CDR3	Ostreococcus_lucimarinus_virus	30.3	3.1e-60
WP_003814006.1|817126_817618_+	acetolactate synthase small subunit	NA	NA	NA	NA	NA
WP_010930015.1|817690_818707_+	ketol-acid reductoisomerase	NA	NA	NA	NA	NA
WP_003814004.1|818874_819654_+	CDP-diacylglycerol--serine O-phosphatidyltransferase	NA	NA	NA	NA	NA
WP_003814003.1|819672_820200_-	lipoprotein	NA	NA	NA	NA	NA
WP_003814002.1|820493_820763_+	30S ribosomal protein S15	NA	NA	NA	NA	NA
WP_003821234.1|820853_823013_+	polyribonucleotide nucleotidyltransferase	NA	NA	NA	NA	NA
WP_003814000.1|823133_823853_+	lipoprotein	NA	NA	NA	NA	NA
WP_005013747.1|823849_824800_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003813999.1|824940_826158_+	threonine ammonia-lyase	NA	NA	NA	NA	NA
WP_010930016.1|826151_826763_-	PIN domain-containing protein	NA	K4HZX4	Acidithiobacillus_phage	32.5	3.3e-12
WP_003813997.1|827396_828374_+	NAD(P)H-quinone oxidoreductase	NA	NA	NA	NA	NA
WP_003813996.1|828517_829264_+	triose-phosphate isomerase	NA	NA	NA	NA	NA
WP_010930017.1|829285_829732_+	preprotein translocase subunit SecG	NA	NA	NA	NA	NA
WP_010930018.1|830519_832751_+|holin	choline BCCT transporter BetT	holin	NA	NA	NA	NA
WP_003813993.1|832773_833574_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003813992.1|833855_835088_+	methylaspartate ammonia-lyase	NA	NA	NA	NA	NA
WP_003813991.1|835198_836188_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930019.1|836218_837607_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_003813988.1|839205_840189_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929632.1|840385_841402_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003813987.1|841598_842423_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_076879542.1|842500_843424_-	transcriptional regulator LrhA	NA	NA	NA	NA	NA
WP_010930021.1|843594_844746_+	cystathionine beta-lyase	NA	NA	NA	NA	NA
WP_010930022.1|844749_845781_+	succinylglutamate desuccinylase/aspartoacylase family protein	NA	NA	NA	NA	NA
WP_010930023.1|845909_846881_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003813982.1|846905_848990_+	rhodanese-like domain-containing protein	NA	NA	NA	NA	NA
WP_003813981.1|849056_850049_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930024.1|850157_851492_-	FAD-binding oxidoreductase	NA	NA	NA	NA	NA
WP_010930025.1|851517_853530_-	hydantoinase B/oxoprolinase family protein	NA	NA	NA	NA	NA
WP_023853163.1|853526_855575_-	hydantoinase/oxoprolinase family protein	NA	NA	NA	NA	NA
WP_010930027.1|855678_856326_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003813974.1|856466_856961_+	azurin	NA	NA	NA	NA	NA
WP_010926969.1|857004_857676_-	transcriptional regulator	NA	NA	NA	NA	NA
WP_010930029.1|857690_859184_-	efflux transporter outer membrane subunit	NA	NA	NA	NA	NA
WP_010930030.1|859180_862294_-	MexW/MexI family multidrug efflux RND transporter permease subunit	NA	S5VTK5	Leptospira_phage	21.5	4.5e-57
WP_010930031.1|862306_863413_-	efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
WP_010930032.1|863536_864205_-	transcriptional regulator	NA	NA	NA	NA	NA
WP_005013747.1|864425_865376_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003813960.1|865458_867417_+|holin	choline BCCT transporter BetT	holin	A0A2I7QNT1	Vibrio_phage	30.3	8.0e-28
>prophage 8
NZ_CP010964	Bordetella pertussis strain E476 chromosome, complete genome	4102978	1020996	1091271	4102978	transposase,tRNA	Enterococcus_phage(14.29%)	60	NA	NA
WP_010930525.1|1020996_1022013_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010926548.1|1023521_1024094_-	chorismate lyase	NA	NA	NA	NA	NA
WP_010930119.1|1024153_1024885_+	rRNA pseudouridine synthase	NA	NA	NA	NA	NA
WP_029443805.1|1024936_1025854_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930121.1|1026661_1029841_+	efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_010930122.1|1029837_1031220_+	efflux transporter outer membrane subunit	NA	NA	NA	NA	NA
WP_010930123.1|1031289_1031541_-	GlsB/YeaQ/YmgE family stress response membrane protein	NA	NA	NA	NA	NA
WP_010930124.1|1031686_1032301_-	SCO family protein	NA	NA	NA	NA	NA
WP_019248379.1|1032487_1034602_-	M3 family metallopeptidase	NA	NA	NA	NA	NA
WP_003811948.1|1034677_1035529_-	bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD	NA	A0A249XZQ2	Enterococcus_phage	39.8	2.1e-33
WP_010930126.1|1035525_1036152_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_003817147.1|1036148_1037903_-	PAS domain S-box protein	NA	NA	NA	NA	NA
WP_010930127.1|1038195_1040901_+	pyruvate dehydrogenase (acetyl-transferring), homodimeric type	NA	NA	NA	NA	NA
WP_010930128.1|1040913_1042575_+	dihydrolipoyllysine-residue acetyltransferase	NA	NA	NA	NA	NA
WP_010930129.1|1042587_1044378_+	dihydrolipoyl dehydrogenase	NA	A0A2K5B2C5	Erysipelothrix_phage	25.2	2.4e-39
WP_003817151.1|1044599_1045775_-	FliC/FljB family flagellin	NA	NA	NA	NA	NA
WP_005012808.1|1045817_1046768_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930130.1|1046866_1047607_-	16S rRNA (uracil(1498)-N(3))-methyltransferase	NA	NA	NA	NA	NA
WP_010930131.1|1047801_1049838_+	transketolase	NA	NA	NA	NA	NA
WP_010930132.1|1049855_1050866_+	type I glyceraldehyde-3-phosphate dehydrogenase	NA	NA	NA	NA	NA
WP_010930133.1|1050983_1052177_+	phosphoglycerate kinase	NA	NA	NA	NA	NA
WP_010930134.1|1052206_1052980_-	enoyl-ACP reductase FabI	NA	NA	NA	NA	NA
WP_010930135.1|1052976_1054167_-	acetate kinase	NA	NA	NA	NA	NA
WP_003809454.1|1054192_1055131_-	phosphate acetyltransferase	NA	NA	NA	NA	NA
WP_010930136.1|1055127_1057476_-	DUF3141 domain-containing protein	NA	NA	NA	NA	NA
WP_010930137.1|1057630_1058272_-	glutathione transferase	NA	NA	NA	NA	NA
WP_023853531.1|1058375_1059509_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994624.1|1059601_1059754_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930138.1|1059785_1060334_-	DinB family protein	NA	NA	NA	NA	NA
WP_003819814.1|1060352_1060838_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_010930139.1|1061015_1061954_+	DnaJ domain-containing protein	NA	A0A0P0YMJ9	Yellowstone_lake_phycodnavirus	24.1	5.6e-11
WP_003809467.1|1061956_1062274_+	MerR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247197.1|1062319_1063264_+	AzlC family ABC transporter permease	NA	NA	NA	NA	NA
WP_010930140.1|1063284_1064760_-	inorganic phosphate transporter	NA	NA	NA	NA	NA
WP_010930141.1|1064944_1065595_+	molybdopterin adenylyltransferase	NA	NA	NA	NA	NA
WP_003809479.1|1065648_1065984_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930142.1|1065980_1066841_+	M23 family metallopeptidase	NA	A0A292GJG6	Xanthomonas_phage	36.1	2.6e-15
WP_003819817.1|1066857_1067139_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003809486.1|1067212_1067476_-	translation initiation factor IF-1	NA	NA	NA	NA	NA
WP_005012067.1|1067719_1068670_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811933.1|1068968_1069706_-	RNA polymerase sigma factor FliA	NA	NA	NA	NA	NA
WP_010930143.1|1070141_1070465_+	flagellar transcriptional regulator FlhD	NA	NA	NA	NA	NA
WP_003811929.1|1070499_1071060_+	flagellar transcriptional regulator FlhC	NA	NA	NA	NA	NA
WP_003811927.1|1071180_1072056_+	flagellar motor stator protein MotA	NA	NA	NA	NA	NA
WP_003817154.1|1072068_1073016_+	flagellar motor protein MotB	NA	NA	NA	NA	NA
WP_019247393.1|1073117_1073411_+	response regulator	NA	NA	NA	NA	NA
WP_010930144.1|1073437_1075495_+	chemotaxis protein CheA	NA	NA	NA	NA	NA
WP_003811919.1|1075509_1076010_+	chemotaxis protein CheW	NA	NA	NA	NA	NA
WP_010930145.1|1076083_1077790_+	Tar ligand binding domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	41.7	1.4e-12
WP_010930146.1|1078653_1079706_+	chemotaxis response regulator protein-glutamate methylesterase	NA	NA	NA	NA	NA
WP_003811911.1|1079758_1080148_+	chemotaxis protein CheY	NA	Q56AR1	Bacillus_thuringiensis_phage	33.3	5.7e-10
WP_003817162.1|1080156_1080789_+	protein phosphatase CheZ	NA	NA	NA	NA	NA
WP_010930147.1|1080888_1081905_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010930148.1|1082693_1083743_+	aldo/keto reductase	NA	NA	NA	NA	NA
WP_014486064.1|1083739_1085383_-	apolipoprotein N-acyltransferase	NA	NA	NA	NA	NA
WP_010930149.1|1085379_1086267_-	CBS domain-containing protein	NA	NA	NA	NA	NA
WP_003809396.1|1086407_1086881_-	rRNA maturation RNase YbeY	NA	NA	NA	NA	NA
WP_010930151.1|1086870_1087893_-	PhoH family protein	NA	A0A0S0MVD6	Pseudomonas_phage	45.4	8.7e-50
WP_015041211.1|1087889_1089317_-|tRNA	tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB	tRNA	NA	NA	NA	NA
WP_010930153.1|1090254_1091271_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
>prophage 9
NZ_CP010964	Bordetella pertussis strain E476 chromosome, complete genome	4102978	1095023	1158133	4102978	holin,transposase,tRNA	Catovirus(20.0%)	53	NA	NA
WP_005012808.1|1095023_1095974_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930155.1|1096072_1097209_-|tRNA	tRNA guanosine(34) transglycosylase Tgt	tRNA	A0A1B1IVQ4	uncultured_Mediterranean_phage	44.4	1.9e-85
WP_023853534.1|1097205_1098279_-|tRNA	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	tRNA	NA	NA	NA	NA
WP_003809423.1|1098436_1099873_+	D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase	NA	NA	NA	NA	NA
WP_010930157.1|1099963_1100605_+	uracil phosphoribosyltransferase	NA	NA	NA	NA	NA
WP_010930158.1|1100940_1101957_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010930159.1|1102289_1105022_+	pertactin autotransporter	NA	NA	NA	NA	NA
WP_010930160.1|1105088_1106510_-	uroporphyrinogen-III C-methyltransferase	NA	NA	NA	NA	NA
WP_003809431.1|1106773_1107490_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003809432.1|1107574_1107892_+	DUF883 domain-containing protein	NA	NA	NA	NA	NA
WP_003819794.1|1107932_1108346_+|holin	phage holin family protein	holin	NA	NA	NA	NA
WP_010930161.1|1108347_1108707_+	hypothetical protein	NA	NA	NA	NA	NA
WP_023853525.1|1108749_1110294_-	4-hydroxy-3-polyprenylbenzoate decarboxylase	NA	NA	NA	NA	NA
WP_010930163.1|1110377_1111208_+	lytic transglycosylase domain-containing protein	NA	NA	NA	NA	NA
WP_010930164.1|1111242_1112397_-	pyridoxal phosphate-dependent aminotransferase	NA	NA	NA	NA	NA
WP_010930165.1|1112439_1113312_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930166.1|1113428_1115717_+	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
WP_003809441.1|1116923_1117388_+	barstar family protein	NA	NA	NA	NA	NA
WP_005013747.1|1117414_1118365_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930167.1|1118732_1119509_-	phosphate ABC transporter ATP-binding protein PstB	NA	G9BWD6	Planktothrix_phage	28.7	4.3e-17
WP_003809638.1|1119553_1120411_-	phosphate ABC transporter permease PstA	NA	NA	NA	NA	NA
WP_010930169.1|1120432_1121449_-	phosphate ABC transporter permease subunit PstC	NA	NA	NA	NA	NA
WP_010930170.1|1121583_1122624_-	phosphate ABC transporter substrate-binding protein PstS	NA	M4QHS4	Cyanophage	39.9	3.0e-50
WP_010930171.1|1122818_1124900_-	polyphosphate kinase 1	NA	NA	NA	NA	NA
WP_010930172.1|1125135_1126629_+	exopolyphosphatase	NA	NA	NA	NA	NA
WP_003809629.1|1126859_1127654_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_003819875.1|1127874_1129233_-	phosphoglucosamine mutase	NA	NA	NA	NA	NA
WP_010930173.1|1129229_1130072_-	dihydropteroate synthase	NA	A0A0B5J4J5	Pandoravirus	32.5	3.2e-26
WP_010930174.1|1130090_1131977_-	ATP-dependent metallopeptidase FtsH/Yme1/Tma family protein	NA	M4QMW8	Micromonas_pusilla_virus	41.5	1.4e-109
WP_162096758.1|1131918_1132170_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930175.1|1132214_1132847_-	RlmE family RNA methyltransferase	NA	NA	NA	NA	NA
WP_003809618.1|1132865_1133468_+	YhbY family RNA-binding protein	NA	NA	NA	NA	NA
WP_077070120.1|1133619_1134570_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|1134668_1135619_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_161633091.1|1136199_1136907_+	DUF192 domain-containing protein	NA	NA	NA	NA	NA
WP_003812707.1|1137265_1138252_-	homoserine kinase	NA	NA	NA	NA	NA
WP_010930178.1|1138391_1139405_+|tRNA	tRNA dihydrouridine(20/20a) synthase DusA	tRNA	NA	NA	NA	NA
WP_010930179.1|1139401_1140352_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812703.1|1140464_1140923_-	CBS domain-containing protein	NA	NA	NA	NA	NA
WP_003812701.1|1140959_1142273_-	YihY family inner membrane protein	NA	NA	NA	NA	NA
WP_010930180.1|1142290_1142662_+	DUF2069 domain-containing protein	NA	NA	NA	NA	NA
WP_010930181.1|1142658_1144122_+	YdiU family protein	NA	A0A075BSJ0	Microcystis_phage	32.5	1.7e-43
WP_010930182.1|1144262_1144991_+	response regulator transcription factor	NA	NA	NA	NA	NA
WP_010930183.1|1144972_1147822_-	EAL domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|1148034_1148985_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930184.1|1149152_1149977_+	ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	22.7	1.0e-08
WP_010930185.1|1149976_1150855_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010930186.1|1151759_1152875_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_020699602.1|1152903_1153698_+	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	23.3	1.2e-11
WP_010930188.1|1153694_1155560_+	long-chain fatty acid--CoA ligase	NA	A0A1V0SBX8	Catovirus	23.3	9.3e-50
WP_003812436.1|1155638_1156271_+	TetR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930189.1|1156267_1156570_-	membrane protein	NA	NA	NA	NA	NA
WP_010930190.1|1156612_1158133_-|tRNA	lysine--tRNA ligase	tRNA	A0A1V0SAC0	Catovirus	36.0	1.2e-82
>prophage 10
NZ_CP010964	Bordetella pertussis strain E476 chromosome, complete genome	4102978	1180051	1248467	4102978	transposase,tRNA	Erysipelothrix_phage(33.33%)	55	NA	NA
WP_010930198.1|1180051_1181002_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019248935.1|1181100_1181724_-	serotype 2 fimbrial subunit	NA	NA	NA	NA	NA
WP_010930200.1|1181903_1184186_-	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
WP_010930201.1|1184340_1187037_-	alpha-ketoglutarate dehydrogenase	NA	NA	NA	NA	NA
WP_010930202.1|1187162_1187651_+	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930203.1|1187686_1189735_+	oligopeptide transporter, OPT family	NA	NA	NA	NA	NA
WP_003813631.1|1190059_1192930_+	2-oxoglutarate dehydrogenase E1 component	NA	NA	NA	NA	NA
WP_010930204.1|1192975_1194190_+	2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase	NA	NA	NA	NA	NA
WP_003813626.1|1194419_1195847_+	dihydrolipoyl dehydrogenase	NA	A0A2K5B2C5	Erysipelothrix_phage	28.1	2.1e-41
WP_023853245.1|1195944_1197036_+	cell division protein ZapE	NA	NA	NA	NA	NA
WP_010930206.1|1197048_1197807_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_003813621.1|1197894_1198797_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|1198793_1199744_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930207.1|1199873_1200857_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003813618.1|1200911_1201634_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930208.1|1202101_1203052_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930209.1|1203773_1204307_+	sigma-70 family RNA polymerase sigma factor	NA	NA	NA	NA	NA
WP_003813612.1|1204299_1205262_+	FecR domain-containing protein	NA	NA	NA	NA	NA
WP_003813609.1|1205355_1207833_+	TonB-dependent siderophore receptor	NA	NA	NA	NA	NA
WP_003813607.1|1207949_1208258_+	DUF3649 domain-containing protein	NA	NA	NA	NA	NA
WP_010930210.1|1209902_1210229_+	DUF3325 domain-containing protein	NA	NA	NA	NA	NA
WP_005013747.1|1210377_1211328_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930211.1|1211337_1212693_+|tRNA	tryptophan--tRNA ligase	tRNA	NA	NA	NA	NA
WP_010930212.1|1212773_1215149_-	RNA-binding transcriptional accessory protein Tex	NA	NA	NA	NA	NA
WP_010930213.1|1215313_1217389_+	ATP-dependent DNA helicase	NA	A0A127AW80	Bacillus_phage	30.0	2.4e-75
WP_003813594.1|1217450_1218251_-	outer membrane protein assembly factor BamD	NA	NA	NA	NA	NA
WP_010930214.1|1218352_1219315_+	RluA family pseudouridine synthase	NA	NA	NA	NA	NA
WP_019247742.1|1219302_1220058_+	peptidoglycan editing factor PgeF	NA	NA	NA	NA	NA
WP_010930216.1|1220165_1221803_+	class I poly(R)-hydroxyalkanoic acid synthase	NA	NA	NA	NA	NA
WP_003813586.1|1221870_1222608_+	acetoacetyl-CoA reductase	NA	NA	NA	NA	NA
WP_003813585.1|1222710_1223286_+	polyhydroxyalkanoate synthesis repressor PhaR	NA	NA	NA	NA	NA
WP_010930217.1|1223458_1223995_+	iron transporter	NA	NA	NA	NA	NA
WP_003813580.1|1223997_1224342_+	cupredoxin domain-containing protein	NA	NA	NA	NA	NA
WP_010930218.1|1224357_1225203_+	FTR1 family protein	NA	NA	NA	NA	NA
WP_003821443.1|1225241_1226621_+	4Fe-4S binding protein	NA	NA	NA	NA	NA
WP_003813574.1|1226698_1227580_+	PhzF family phenazine biosynthesis protein	NA	NA	NA	NA	NA
WP_010929956.1|1227678_1228629_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811632.1|1228625_1229036_-	VOC family protein	NA	NA	NA	NA	NA
WP_010930219.1|1229143_1229998_-	amidohydrolase family protein	NA	NA	NA	NA	NA
WP_003811636.1|1229990_1230953_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930220.1|1230998_1232123_-	mandelate racemase/muconate lactonizing enzyme family protein	NA	Q6A202	Oenococcus_phage	28.3	1.5e-31
WP_019247966.1|1232228_1233107_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930222.1|1233231_1234011_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930223.1|1234164_1235586_+	MFS transporter	NA	NA	NA	NA	NA
WP_010930224.1|1236020_1237718_+	sodium:solute symporter family protein	NA	NA	NA	NA	NA
WP_010930225.1|1237944_1238886_-	LD-carboxypeptidase	NA	NA	NA	NA	NA
WP_010930226.1|1239212_1239959_+	aldolase	NA	NA	NA	NA	NA
WP_033446252.1|1239966_1240893_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930228.1|1241014_1241932_+	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_003811660.1|1241971_1242925_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003811662.1|1242949_1243528_+	amino acid synthesis family protein	NA	NA	NA	NA	NA
WP_010930229.1|1245201_1245810_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930230.1|1245887_1246241_-	NirD/YgiW/YdeI family stress tolerance protein	NA	NA	NA	NA	NA
WP_010930231.1|1246324_1247314_-	succinylglutamate desuccinylase/aspartoacylase family protein	NA	NA	NA	NA	NA
WP_010929591.1|1247516_1248467_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 11
NZ_CP010964	Bordetella pertussis strain E476 chromosome, complete genome	4102978	1319707	1385015	4102978	transposase,tRNA	Bacillus_virus(18.18%)	55	NA	NA
WP_003810552.1|1319707_1320442_+|tRNA	tRNA pseudouridine(55) synthase TruB	tRNA	NA	NA	NA	NA
WP_003818637.1|1320458_1322279_+	translational GTPase TypA	NA	NA	NA	NA	NA
WP_010928248.1|1322349_1323075_-	toxin	NA	NA	NA	NA	NA
WP_003818640.1|1323071_1323476_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930272.1|1323627_1324257_-	TIGR00730 family Rossman fold protein	NA	F4YCQ1	Synechococcus_phage	27.1	6.6e-08
WP_010930273.1|1324309_1327024_+	DNA polymerase I	NA	B6V2J7	Bacillus_phage	30.7	5.0e-68
WP_010930274.1|1327134_1327971_+	ZIP family metal transporter	NA	NA	NA	NA	NA
WP_010930275.1|1328025_1328814_+	dienelactone hydrolase family protein	NA	NA	NA	NA	NA
WP_010930276.1|1328847_1330509_-	Na/Pi cotransporter family protein	NA	NA	NA	NA	NA
WP_010930277.1|1330676_1332068_+	L-serine ammonia-lyase	NA	NA	NA	NA	NA
WP_003810571.1|1332205_1332865_-	epoxyqueuosine reductase QueH	NA	NA	NA	NA	NA
WP_050865593.1|1332900_1335726_-	bifunctional [glutamate--ammonia ligase]-adenylyl-L-tyrosine phosphorylase/[glutamate--ammonia-ligase] adenylyltransferase	NA	NA	NA	NA	NA
WP_003810577.1|1339499_1340756_-	transcription termination factor Rho	NA	NA	NA	NA	NA
WP_023852918.1|1340868_1341195_-	thioredoxin TrxA	NA	A0A1J0GW78	Streptomyces_phage	46.2	1.3e-18
WP_010930279.1|1341487_1343449_+	type IIA DNA topoisomerase subunit B	NA	G3M9Z3	Bacillus_virus	35.5	4.2e-93
WP_010930280.1|1343448_1344057_+	YcxB family protein	NA	NA	NA	NA	NA
WP_010930281.1|1344074_1346390_+	DNA topoisomerase IV subunit A	NA	G3M9Z5	Bacillus_virus	31.5	4.5e-78
WP_010930282.1|1346392_1347607_+	DUF418 domain-containing protein	NA	NA	NA	NA	NA
WP_005012808.1|1347603_1348554_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930283.1|1349322_1349961_-	glutathione S-transferase	NA	NA	NA	NA	NA
WP_019247793.1|1350850_1351297_+	aspartate/glutamate racemase family protein	NA	NA	NA	NA	NA
WP_010930284.1|1351378_1352080_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.4	1.3e-17
WP_003811277.1|1352080_1352848_-	high-affinity branched-chain amino acid ABC transporter ATP-binding protein LivG	NA	A0A2H4PQG7	Staphylococcus_phage	26.4	1.2e-14
WP_010930285.1|1352844_1354083_-	high-affinity branched-chain amino acid ABC transporter permease LivM	NA	NA	NA	NA	NA
WP_003811272.1|1354082_1355009_-	high-affinity branched-chain amino acid ABC transporter permease LivH	NA	NA	NA	NA	NA
WP_010930286.1|1355111_1356227_-	branched-chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_005015810.1|1356242_1357193_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930287.1|1357546_1358128_-	queuosine precursor transporter	NA	A0A2I7SAW6	Vibrio_phage	37.3	9.4e-17
WP_003811267.1|1358124_1358958_-	pyrroline-5-carboxylate reductase	NA	NA	NA	NA	NA
WP_010930288.1|1359168_1360482_+	sn-glycerol-3-phosphate ABC transporter substrate-binding protein UgpB	NA	NA	NA	NA	NA
WP_003811262.1|1360658_1361540_+	sn-glycerol-3-phosphate ABC transporter permease UgpA	NA	NA	NA	NA	NA
WP_003811259.1|1361559_1362411_+	sn-glycerol-3-phosphate ABC transporter permease UgpE	NA	NA	NA	NA	NA
WP_010930289.1|1362463_1363552_+	sn-glycerol-3-phosphate import ATP-binding protein UgpC	NA	G9BWD6	Planktothrix_phage	31.2	2.2e-19
WP_010930290.1|1363662_1364790_-	branched-chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003811244.1|1365024_1365636_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_077069213.1|1365734_1366685_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012808.1|1366783_1367734_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929584.1|1367832_1368783_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811293.1|1369004_1369382_-	DUF423 domain-containing protein	NA	NA	NA	NA	NA
WP_003811295.1|1369529_1370027_+	DUF2384 domain-containing protein	NA	NA	NA	NA	NA
WP_010930291.1|1370023_1370551_+	RES family NAD+ phosphorylase	NA	NA	NA	NA	NA
WP_003811298.1|1370684_1371500_+	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930292.1|1371512_1372694_-	alpha-hydroxy-acid oxidizing protein	NA	NA	NA	NA	NA
WP_003811301.1|1372741_1373635_-	phosphatidylserine decarboxylase	NA	NA	NA	NA	NA
WP_010930293.1|1373761_1374232_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930294.1|1374357_1375185_-	DUF3298 domain-containing protein	NA	NA	NA	NA	NA
WP_010930295.1|1376276_1376741_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_010930296.1|1376752_1377454_-	glutathione S-transferase N-terminal domain-containing protein	NA	NA	NA	NA	NA
WP_003811310.1|1377563_1378064_-	glutathione peroxidase	NA	Q6VZR0	Canarypox_virus	38.4	4.7e-25
WP_010930297.1|1378146_1379325_-	DUF1501 domain-containing protein	NA	NA	NA	NA	NA
WP_003811313.1|1380952_1381288_+	tetratricopeptide repeat protein	NA	NA	NA	NA	NA
WP_010930298.1|1381475_1382924_+	CoA transferase	NA	NA	NA	NA	NA
WP_023852799.1|1382981_1383326_+	arsenate reductase (glutaredoxin)	NA	A0A2H4J8T1	uncultured_Caudovirales_phage	58.4	3.0e-31
WP_003811316.1|1383432_1383972_-	peroxiredoxin	NA	NA	NA	NA	NA
WP_005012067.1|1384064_1385015_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 12
NZ_CP010964	Bordetella pertussis strain E476 chromosome, complete genome	4102978	1413130	1479630	4102978	transposase	uncultured_Caudovirales_phage(40.0%)	56	NA	NA
WP_010930208.1|1413130_1414081_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811361.1|1414146_1414326_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247449.1|1414442_1415198_-	alpha/beta fold hydrolase	NA	NA	NA	NA	NA
WP_010930310.1|1415184_1416330_-	DUF3182 family protein	NA	NA	NA	NA	NA
WP_010929588.1|1417237_1418188_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811370.1|1418375_1419578_-	cardiolipin synthase ClsB	NA	NA	NA	NA	NA
WP_003811372.1|1419574_1420333_-	endonuclease/exonuclease/phosphatase family protein	NA	NA	NA	NA	NA
WP_003811375.1|1420726_1421359_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010930311.1|1422314_1424915_+	BP1344/BB2830 family autotransporter	NA	NA	NA	NA	NA
WP_010930312.1|1424902_1428322_-	TM0106 family RecB-like putative nuclease	NA	NA	NA	NA	NA
WP_010930313.1|1428329_1429235_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811381.1|1429373_1429952_+	NAD(P)H-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010930314.1|1429948_1430860_+	CoA ester lyase	NA	NA	NA	NA	NA
WP_010930315.1|1430873_1431554_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930316.1|1431755_1433795_+	acetate--CoA ligase family protein	NA	NA	NA	NA	NA
WP_014486069.1|1433813_1434800_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930317.1|1434825_1435623_+	citryl-CoA lyase	NA	NA	NA	NA	NA
WP_003811389.1|1435619_1436813_+	CoA transferase	NA	NA	NA	NA	NA
WP_003811391.1|1436809_1437772_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003811393.1|1437789_1438830_-	LacI family DNA-binding transcriptional regulator	NA	NA	NA	NA	NA
WP_003811396.1|1438817_1439426_-	3-isopropylmalate dehydratase small subunit	NA	NA	NA	NA	NA
WP_010930318.1|1441014_1442010_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003811400.1|1442029_1443208_+	mandelate racemase/muconate lactonizing enzyme family protein	NA	NA	NA	NA	NA
WP_003811401.1|1443218_1444136_+	2-dehydropantoate 2-reductase	NA	NA	NA	NA	NA
WP_010930208.1|1444191_1445142_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812022.1|1445240_1446011_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	39.1	9.8e-30
WP_003812020.1|1446007_1446688_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010930319.1|1446754_1447543_-	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930320.1|1447789_1448806_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010930321.1|1449111_1450266_+	flagellar type III secretion system protein FlhB	NA	NA	NA	NA	NA
WP_003817170.1|1454771_1455254_-	flagellar protein FlgN	NA	NA	NA	NA	NA
WP_003817172.1|1455271_1455562_-	flagellar biosynthesis anti-sigma factor FlgM	NA	NA	NA	NA	NA
WP_010930322.1|1455688_1456399_-	flagellar basal body P-ring formation protein FlgA	NA	NA	NA	NA	NA
WP_010930323.1|1456582_1456990_+	flagellar basal body rod protein FlgB	NA	NA	NA	NA	NA
WP_003817176.1|1457002_1457422_+	flagellar basal body rod protein FlgC	NA	NA	NA	NA	NA
WP_010930324.1|1457469_1458174_+	flagellar basal body rod modification protein FlgD	NA	NA	NA	NA	NA
WP_003817180.1|1458239_1459661_+	flagellar hook-basal body complex protein	NA	NA	NA	NA	NA
WP_003817181.1|1459699_1460464_+	flagellar basal body rod protein FlgF	NA	NA	NA	NA	NA
WP_010930325.1|1460507_1461293_+	flagellar basal-body rod protein FlgG	NA	NA	NA	NA	NA
WP_010930326.1|1461292_1461982_+	flagellar basal body L-ring protein FlgH	NA	NA	NA	NA	NA
WP_010930327.1|1461984_1463118_+	flagellar basal body P-ring protein FlgI	NA	NA	NA	NA	NA
WP_010930328.1|1463135_1464158_+	flagellar assembly peptidoglycan hydrolase FlgJ	NA	A0A088F6W1	Sulfitobacter_phage	31.4	1.9e-12
WP_010930329.1|1464227_1465874_+	flagellar hook-associated protein FlgK	NA	NA	NA	NA	NA
WP_010930330.1|1465907_1467440_+	flagellar hook-associated protein FlgL	NA	NA	NA	NA	NA
WP_010930331.1|1467518_1469339_+	Tar ligand binding domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	52.6	6.4e-11
WP_010930332.1|1469459_1471079_+	Tar ligand binding domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	45.3	1.5e-08
WP_014486070.1|1471257_1472700_+	PAS domain-containing protein	NA	A0A1B0V854	Salmonella_phage	41.8	1.0e-35
WP_010929632.1|1472916_1473933_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010930333.1|1473979_1474768_-	flagellar biosynthetic protein FliR	NA	NA	NA	NA	NA
WP_003811859.1|1474790_1475060_-	flagellar biosynthesis protein FliQ	NA	NA	NA	NA	NA
WP_015041547.1|1475076_1475868_-	flagellar type III secretion system pore protein FliP	NA	NA	NA	NA	NA
WP_003811855.1|1475879_1476221_-	flagellar biosynthetic protein FliO	NA	NA	NA	NA	NA
WP_010930335.1|1476231_1476732_-	flagellar motor switch protein FliN	NA	NA	NA	NA	NA
WP_003811852.1|1476724_1477735_-	flagellar motor switch protein FliM	NA	NA	NA	NA	NA
WP_003811850.1|1477737_1478310_-	flagellar basal body-associated protein FliL	NA	NA	NA	NA	NA
WP_005012067.1|1478679_1479630_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 13
NZ_CP010964	Bordetella pertussis strain E476 chromosome, complete genome	4102978	1521910	1581181	4102978	transposase,tRNA	Bacillus_phage(25.0%)	54	NA	NA
WP_005012067.1|1521910_1522861_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811759.1|1522978_1523905_+	paraslipin	NA	NA	NA	NA	NA
WP_010930360.1|1523970_1525128_+	GGDEF domain-containing protein	NA	A0A127AWB9	Bacillus_phage	36.2	2.3e-14
WP_003811754.1|1525108_1525576_-	SsrA-binding protein SmpB	NA	W5RAM5	Staphylococcus_phage	45.1	6.2e-27
WP_003811752.1|1525641_1526076_+	type II toxin-antitoxin system RatA family toxin	NA	NA	NA	NA	NA
WP_003811750.1|1526065_1526416_+	RnfH family protein	NA	NA	NA	NA	NA
WP_003811748.1|1526612_1527767_+	acyl-CoA dehydrogenase family protein	NA	NA	NA	NA	NA
WP_003811746.1|1527763_1528936_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003811743.1|1528983_1529877_+	3-hydroxyisobutyrate dehydrogenase	NA	NA	NA	NA	NA
WP_003811741.1|1529922_1530360_+	PaaI family thioesterase	NA	NA	NA	NA	NA
WP_010930362.1|1530419_1531109_+	VIT family protein	NA	NA	NA	NA	NA
WP_010930363.1|1531118_1532069_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_076879624.1|1532167_1533118_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930364.1|1533216_1534179_-	transaldolase	NA	H6WFR1	Cyanophage	29.2	7.5e-11
WP_023852833.1|1534405_1535560_+	glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit	NA	R4TGJ8	Halovirus	35.4	3.3e-53
WP_010930366.1|1535570_1538813_+	carbamoyl-phosphate synthase large subunit	NA	NA	NA	NA	NA
WP_003809593.1|1539834_1540479_-	histidine phosphatase family protein	NA	NA	NA	NA	NA
WP_010930367.1|1540489_1541389_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003809599.1|1541436_1542522_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	37.7	6.4e-27
WP_010930368.1|1542518_1544213_-	iron ABC transporter permease	NA	NA	NA	NA	NA
WP_005012808.1|1544391_1545342_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247209.1|1545483_1545786_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247210.1|1545801_1546854_+	EAL domain-containing protein	NA	NA	NA	NA	NA
WP_003820487.1|1546895_1547957_+	chorismate synthase	NA	A0A291AU41	Pandoravirus	42.8	2.9e-80
WP_010930369.1|1547990_1548827_+	M48 family metallopeptidase	NA	NA	NA	NA	NA
WP_003812685.1|1548836_1549379_-	molybdopterin-guanine dinucleotide biosynthesis protein B	NA	NA	NA	NA	NA
WP_010930370.1|1549392_1550685_-	molybdopterin molybdotransferase MoeA	NA	NA	NA	NA	NA
WP_010930371.1|1550681_1551275_-	molybdenum cofactor guanylyltransferase MobA	NA	NA	NA	NA	NA
WP_004567450.1|1551427_1552525_+	iron-sulfur cluster carrier protein ApbC	NA	NA	NA	NA	NA
WP_003820494.1|1552531_1553092_+	DUF3305 domain-containing protein	NA	NA	NA	NA	NA
WP_010930372.1|1553088_1553769_+	DUF3306 domain-containing protein	NA	NA	NA	NA	NA
WP_010930373.1|1553792_1555883_+	4Fe-4S binding protein	NA	NA	NA	NA	NA
WP_010930374.1|1555879_1556509_+	molecular chaperone TorD family protein	NA	NA	NA	NA	NA
WP_023853518.1|1556660_1556870_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247523.1|1556884_1559854_+	formate dehydrogenase subunit alpha	NA	NA	NA	NA	NA
WP_003812666.1|1560488_1560722_+	lipoprotein	NA	NA	NA	NA	NA
WP_010930376.1|1560734_1561892_+	formate dehydrogenase subunit gamma	NA	NA	NA	NA	NA
WP_004567447.1|1561914_1562289_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930377.1|1562322_1563438_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010930378.1|1564337_1565042_+	phosphate ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.0	2.6e-13
WP_004567445.1|1565038_1565857_+	substrate-binding domain-containing protein	NA	NA	NA	NA	NA
WP_010930379.1|1566140_1567544_+	3-isopropylmalate dehydratase large subunit	NA	NA	NA	NA	NA
WP_010930380.1|1567558_1568209_+	3-isopropylmalate dehydratase small subunit	NA	NA	NA	NA	NA
WP_010930381.1|1568290_1569367_+	3-isopropylmalate dehydrogenase	NA	NA	NA	NA	NA
WP_010930382.1|1569553_1570684_+	aspartate-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
WP_023853502.1|1570734_1572438_+	FimV N-terminal domain protein	NA	NA	NA	NA	NA
WP_010930384.1|1572441_1573254_+|tRNA	tRNA pseudouridine(38-40) synthase TruA	tRNA	NA	NA	NA	NA
WP_010930385.1|1573398_1574493_+	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930386.1|1574704_1575334_+	TRAP transporter small permease subunit	NA	NA	NA	NA	NA
WP_010930387.1|1575336_1577004_+	TRAP transporter large permease subunit	NA	NA	NA	NA	NA
WP_010930388.1|1577018_1577675_+	phosphoribosylanthranilate isomerase	NA	NA	NA	NA	NA
WP_076879548.1|1578154_1579105_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930389.1|1579136_1580234_+	sensor domain-containing diguanylate cyclase	NA	A0A127AWB9	Bacillus_phage	37.3	3.5e-20
WP_005013747.1|1580230_1581181_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 14
NZ_CP010964	Bordetella pertussis strain E476 chromosome, complete genome	4102978	1623030	1691115	4102978	transposase,tRNA	Streptococcus_virus(11.11%)	59	NA	NA
WP_010930416.1|1623030_1623519_+|tRNA	Cys-tRNA(Pro) deacylase	tRNA	NA	NA	NA	NA
WP_010930417.1|1623636_1624215_+	DJ-1/PfpI family protein	NA	NA	NA	NA	NA
WP_010930418.1|1624320_1624689_+	ribbon-helix-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010929591.1|1624787_1625738_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994932.1|1625744_1626857_-	D-alanyl-D-alanine endopeptidase	NA	NA	NA	NA	NA
WP_010930419.1|1627543_1628746_+	MFS transporter	NA	NA	NA	NA	NA
WP_004568212.1|1628781_1628928_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930420.1|1628949_1631610_+	PD-(D/E)XK nuclease family protein	NA	NA	NA	NA	NA
WP_010930421.1|1631622_1635027_+	UvrD-helicase domain-containing protein	NA	NA	NA	NA	NA
WP_023995689.1|1635694_1637920_+	DNA polymerase III subunit gamma/tau	NA	A0A1U9WR94	Streptococcus_virus	38.5	1.2e-43
WP_010930423.1|1637966_1638293_+	YbaB/EbfC family nucleoid-associated protein	NA	NA	NA	NA	NA
WP_010930424.1|1638343_1638952_+	recombination protein RecR	NA	NA	NA	NA	NA
WP_005013747.1|1639050_1640001_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930425.1|1640070_1640835_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930426.1|1640831_1641431_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930427.1|1641534_1642386_-	neutral zinc metallopeptidase	NA	A0A1I9SA48	Rhodococcus_phage	35.3	7.0e-37
WP_010928449.1|1642445_1643072_+	threonylcarbamoyl-AMP synthase	NA	NA	NA	NA	NA
WP_005012067.1|1643068_1644019_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019249265.1|1644117_1645230_-	DUF1513 domain-containing protein	NA	NA	NA	NA	NA
WP_019248041.1|1645219_1646221_-	imelysin family protein	NA	NA	NA	NA	NA
WP_019247498.1|1646326_1647838_-	c-type cytochrome	NA	NA	NA	NA	NA
WP_023853587.1|1647834_1649139_-	imelysin	NA	NA	NA	NA	NA
WP_010930431.1|1649250_1649811_-	membrane protein	NA	NA	NA	NA	NA
WP_010930432.1|1650078_1650633_+	NAD(P)H-dependent oxidoreductase	NA	A0A2P0ZL82	Lactobacillus_phage	32.0	1.7e-15
WP_010930433.1|1651088_1651304_-	dodecin domain-containing protein	NA	NA	NA	NA	NA
WP_033446228.1|1651558_1654156_+	DNA mismatch repair protein MutS	NA	A0A1V0SDQ0	Indivirus	22.6	1.5e-21
WP_010930435.1|1654152_1655340_+	cupin domain-containing protein	NA	NA	NA	NA	NA
WP_010930436.1|1655997_1656612_+	serotype 3 fimbrial subunit	NA	NA	NA	NA	NA
WP_010930437.1|1656700_1657828_-	outer membrane protein assembly factor BamC	NA	NA	NA	NA	NA
WP_003809954.1|1657839_1658745_-	4-hydroxy-tetrahydrodipicolinate synthase	NA	NA	NA	NA	NA
WP_005012067.1|1659637_1660588_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930439.1|1660769_1661522_+	glutamine ABC transporter substrate-binding protein GlnH	NA	NA	NA	NA	NA
WP_003811112.1|1661590_1662250_+	glutamine ABC transporter permease GlnP	NA	NA	NA	NA	NA
WP_003811113.1|1662246_1662975_+	glutamine ABC transporter ATP-binding protein GlnQ	NA	G9BWD6	Planktothrix_phage	39.3	3.3e-35
WP_010930440.1|1662987_1665267_-	bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase	NA	A0A1B1IUF0	uncultured_Mediterranean_phage	32.1	5.9e-06
WP_010930441.1|1665291_1665495_-	DNA-directed RNA polymerase subunit omega	NA	NA	NA	NA	NA
WP_010930442.1|1665536_1666169_-	guanylate kinase	NA	A0A218KC48	Bacillus_phage	33.9	2.4e-13
WP_010930443.1|1666304_1667222_-	c-type cytochrome	NA	NA	NA	NA	NA
WP_010930444.1|1667218_1667932_-	c-type cytochrome	NA	NA	NA	NA	NA
WP_003811135.1|1668169_1668940_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_003811137.1|1668944_1669544_-	C40 family peptidase	NA	A0A0A8WF62	Clostridium_phage	41.6	1.4e-20
WP_003811138.1|1669788_1671279_+	AMP nucleosidase	NA	NA	NA	NA	NA
WP_010926696.1|1671337_1671622_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010930445.1|1671759_1671915_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003811148.1|1672187_1673114_-	YicC family protein	NA	NA	NA	NA	NA
WP_003811149.1|1673250_1673991_+	ribonuclease PH	NA	NA	NA	NA	NA
WP_010930446.1|1674157_1675534_-	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_003811152.1|1675715_1676621_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930448.1|1678272_1680075_-	EAL domain-containing protein	NA	NA	NA	NA	NA
WP_010930449.1|1680201_1680843_+	RdgB/HAM1 family non-canonical purine NTP pyrophosphatase	NA	NA	NA	NA	NA
WP_010929584.1|1680941_1681892_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930450.1|1681913_1683134_+	oxygen-independent coproporphyrinogen III oxidase-like protein	NA	NA	NA	NA	NA
WP_003811164.1|1683319_1684732_+	type I glutamate--ammonia ligase	NA	NA	NA	NA	NA
WP_003811167.1|1684795_1685863_+	PAS domain-containing protein	NA	Q8QKV7	Ectocarpus_siliculosus_virus	23.5	1.1e-05
WP_010930451.1|1685862_1687350_+	nitrogen regulation protein NR(I)	NA	NA	NA	NA	NA
WP_010930452.1|1687359_1688304_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811176.1|1688463_1689162_+	pirin family protein	NA	NA	NA	NA	NA
WP_010930453.1|1689239_1690145_+	pirin family protein	NA	NA	NA	NA	NA
WP_005012067.1|1690164_1691115_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 15
NZ_CP010964	Bordetella pertussis strain E476 chromosome, complete genome	4102978	1727070	1782661	4102978	transposase	Tetraselmis_virus(25.0%)	47	NA	NA
WP_005012067.1|1727070_1728021_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023852967.1|1728573_1730199_-	arylsulfatase	NA	A0A2P0VMN7	Tetraselmis_virus	52.2	2.0e-149
WP_010930475.1|1730248_1731283_-	haloacid dehalogenase-like hydrolase	NA	NA	NA	NA	NA
WP_010930476.1|1731285_1732632_-	BatD family protein	NA	NA	NA	NA	NA
WP_010930477.1|1732628_1734143_-	VWA domain-containing protein	NA	NA	NA	NA	NA
WP_010930478.1|1734133_1735144_-	VWA domain-containing protein	NA	NA	NA	NA	NA
WP_010930479.1|1735617_1736559_-	DUF58 domain-containing protein	NA	NA	NA	NA	NA
WP_010930480.1|1736567_1737536_-	AAA family ATPase	NA	NA	NA	NA	NA
WP_010930481.1|1739075_1740044_+	transporter	NA	NA	NA	NA	NA
WP_010930482.1|1740221_1741211_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010926609.1|1741257_1742016_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930483.1|1742205_1742943_+	TerC family protein	NA	A0A0S4KZH7	Pseudomonas_phage	46.6	4.1e-41
WP_005012808.1|1743041_1743992_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003816696.1|1744176_1744959_+	ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	25.8	2.0e-09
WP_003810743.1|1744952_1745654_+	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
WP_003810741.1|1745893_1746496_+	TetR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005013747.1|1747822_1748773_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930485.1|1748769_1750326_-	LTA synthase family protein	NA	NA	NA	NA	NA
WP_010930486.1|1750318_1751092_-	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_005013747.1|1751150_1752101_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930487.1|1752205_1753153_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247865.1|1753206_1755021_-	sensor histidine kinase	NA	NA	NA	NA	NA
WP_010930489.1|1755013_1755688_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_023995112.1|1755817_1758892_+	autotransporter SphB2	NA	NA	NA	NA	NA
WP_010930491.1|1758905_1759205_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010930492.1|1759519_1760143_-	glutathione S-transferase family protein	NA	NA	NA	NA	NA
WP_010930493.1|1760386_1761256_+	TauD/TfdA family dioxygenase	NA	NA	NA	NA	NA
WP_010930494.1|1761233_1762178_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247909.1|1762263_1763190_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019247910.1|1763302_1764082_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930497.1|1764072_1765269_-	alpha-hydroxy-acid oxidizing protein	NA	NA	NA	NA	NA
WP_010930498.1|1765299_1766250_-	fumarylacetoacetate hydrolase family protein	NA	NA	NA	NA	NA
WP_010930499.1|1766471_1767161_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930500.1|1767225_1767981_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930501.1|1768032_1769025_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930502.1|1769034_1769988_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811538.1|1770103_1771066_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019249376.1|1772467_1772896_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|1772892_1773843_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_170954298.1|1774136_1774874_-	arsenical resistance protein ArsH	NA	A0A2H4J5V6	uncultured_Caudovirales_phage	68.2	1.3e-87
WP_010930504.1|1775297_1776485_-	MFS transporter	NA	NA	NA	NA	NA
WP_019249653.1|1776488_1776869_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010930506.1|1778588_1779560_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930507.1|1779573_1780287_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930508.1|1780291_1781209_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811452.1|1781315_1781612_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929588.1|1781710_1782661_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 16
NZ_CP010964	Bordetella pertussis strain E476 chromosome, complete genome	4102978	1789957	1909306	4102978	protease,transposase,tRNA	Moraxella_phage(11.11%)	106	NA	NA
WP_005013747.1|1789957_1790908_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247780.1|1790951_1791494_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930513.1|1791591_1792440_+	haloacid dehalogenase-like hydrolase	NA	NA	NA	NA	NA
WP_004568494.1|1792432_1792939_+|tRNA	tRNA adenosine(34) deaminase TadA	tRNA	S4VYT2	Pandoravirus	38.4	3.4e-07
WP_010930515.1|1792935_1793937_+	muramoyltetrapeptide carboxypeptidase	NA	NA	NA	NA	NA
WP_010930516.1|1793949_1794744_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010930517.1|1794792_1796694_-	TRAP transporter large permease subunit	NA	NA	NA	NA	NA
WP_003810992.1|1796690_1797314_-	TRAP transporter small permease subunit	NA	NA	NA	NA	NA
WP_003816541.1|1797440_1798565_-	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930518.1|1798945_1800550_+	ABC-F family ATPase	NA	A0A1V0SKJ1	Klosneuvirus	28.9	1.2e-53
WP_010930519.1|1800705_1801482_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	34.2	1.2e-30
WP_010930520.1|1801566_1802565_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930521.1|1802561_1803335_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010930522.1|1804319_1805270_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930523.1|1805307_1805895_+	YigZ family protein	NA	A0A1X9I5T8	Streptococcus_phage	35.8	4.7e-16
WP_003811007.1|1805912_1806296_-	thioredoxin family protein	NA	V9SJ74	Achromobacter_phage	25.8	8.1e-09
WP_003811011.1|1807655_1808948_-	NCS2 family permease	NA	A0A0R6PHV4	Moraxella_phage	36.0	1.7e-66
WP_010930524.1|1809082_1810123_+|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD	tRNA	A0A0R6PI74	Moraxella_phage	51.3	6.1e-91
WP_010930525.1|1810220_1811237_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003811015.1|1811504_1812152_-	glycerol-3-phosphate 1-O-acyltransferase PlsY	NA	NA	NA	NA	NA
WP_010930526.1|1812277_1813036_+	5'/3'-nucleotidase SurE	NA	A0A1B1ITZ2	uncultured_Mediterranean_phage	51.2	1.4e-68
WP_019247478.1|1813020_1813800_+	protein-L-isoaspartate(D-aspartate) O-methyltransferase	NA	A0A1B1IU40	uncultured_Mediterranean_phage	46.9	4.8e-32
WP_003811022.1|1813817_1814702_+	peptidoglycan DD-metalloendopeptidase family protein	NA	A0A292GJG6	Xanthomonas_phage	49.5	4.6e-15
WP_004568488.1|1814698_1815478_+	3'-5' exonuclease	NA	NA	NA	NA	NA
WP_010930528.1|1815582_1816182_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930529.1|1816470_1817223_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003816525.1|1817341_1818742_+	23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD	NA	A0A2K5B251	Erysipelothrix_phage	26.5	7.3e-31
WP_003816523.1|1818765_1819164_-	Cu(I)-responsive transcriptional regulator	NA	NA	NA	NA	NA
WP_003811035.1|1819339_1819540_+	heavy-metal-associated domain-containing protein	NA	NA	NA	NA	NA
WP_010930530.1|1819678_1820407_+	redoxin family protein	NA	A0A1D8KSL1	Synechococcus_phage	56.8	9.6e-43
WP_003816520.1|1820540_1821956_+	dihydrolipoyl dehydrogenase	NA	NA	NA	NA	NA
WP_003816518.1|1821959_1822823_-	23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ	NA	NA	NA	NA	NA
WP_004568486.1|1822835_1823585_-	glycerophosphodiester phosphodiesterase	NA	A0A2H4PGQ5	Escherichia_phage	27.8	1.5e-14
WP_019247881.1|1823767_1825783_+	SurA N-terminal domain-containing protein	NA	NA	NA	NA	NA
WP_019247882.1|1825764_1826433_-	arylesterase	NA	NA	NA	NA	NA
WP_005012067.1|1827207_1828158_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003813572.1|1828306_1828645_-	BON domain-containing protein	NA	NA	NA	NA	NA
WP_003813570.1|1828702_1828864_-	DUF1328 domain-containing protein	NA	NA	NA	NA	NA
WP_003813568.1|1828895_1829096_-	CsbD family protein	NA	NA	NA	NA	NA
WP_010930533.1|1829361_1831935_-	cyanophycin synthetase	NA	NA	NA	NA	NA
WP_019247811.1|1832005_1834555_-	cyanophycin synthetase	NA	NA	NA	NA	NA
WP_010930535.1|1837105_1837594_+	DUF1854 domain-containing protein	NA	NA	NA	NA	NA
WP_029443743.1|1837685_1838837_-	N-acetyltransferase	NA	NA	NA	NA	NA
WP_004566336.1|1838890_1839712_+	ferritin-like domain-containing protein	NA	NA	NA	NA	NA
WP_010930537.1|1839750_1840980_+	lytic murein transglycosylase	NA	NA	NA	NA	NA
WP_004566334.1|1841108_1841549_+	DUF937 domain-containing protein	NA	NA	NA	NA	NA
WP_005012808.1|1841659_1842610_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930538.1|1842606_1843080_-	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_033446178.1|1843241_1844180_+	membrane protein	NA	NA	NA	NA	NA
WP_010930540.1|1844181_1845390_-	bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC	NA	Q9HH70	Methanothermobacter_phage	30.0	3.8e-36
WP_010930541.1|1845494_1846001_-	lipoprotein signal peptidase	NA	NA	NA	NA	NA
WP_010930542.1|1846003_1848865_-|tRNA	isoleucine--tRNA ligase	tRNA	A0A1V0SJ93	Klosneuvirus	25.5	1.0e-71
WP_010930543.1|1848854_1849820_-	bifunctional riboflavin kinase/FAD synthetase	NA	NA	NA	NA	NA
WP_010930544.1|1850572_1851874_+	RsmB/NOP family class I SAM-dependent RNA methyltransferase	NA	NA	NA	NA	NA
WP_005012067.1|1851972_1852923_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_041337087.1|1853021_1853972_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930545.1|1853968_1854343_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003812548.1|1854604_1855813_+	fatty acid desaturase	NA	NA	NA	NA	NA
WP_003812546.1|1855809_1858110_+	UvrD-helicase domain-containing protein	NA	A7KV33	Bacillus_phage	35.9	9.9e-110
WP_010926400.1|1858162_1860775_-	TonB-dependent receptor	NA	NA	NA	NA	NA
WP_010930546.1|1861134_1863060_-	ATP-binding cassette domain-containing protein	NA	A0A2K9L0W2	Tupanvirus	31.8	1.1e-66
WP_010930547.1|1863056_1863953_-	50S ribosomal protein L3 N(5)-glutamine methyltransferase	NA	NA	NA	NA	NA
WP_010930548.1|1863959_1865099_-	succinyl-diaminopimelate desuccinylase	NA	NA	NA	NA	NA
WP_003812536.1|1865098_1865920_-	2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase	NA	NA	NA	NA	NA
WP_010930549.1|1867490_1867820_-	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
WP_010930550.1|1868202_1869459_+	autotransporter Phg	NA	NA	NA	NA	NA
WP_003812526.1|1869533_1869815_+	membrane protein	NA	NA	NA	NA	NA
WP_003812524.1|1869856_1870177_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930551.1|1870483_1870687_+	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	62.1	1.6e-16
WP_010930552.1|1870770_1871337_+	DUF924 family protein	NA	NA	NA	NA	NA
WP_010930553.1|1871682_1871883_+	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	64.4	7.4e-14
WP_010930554.1|1871994_1872555_-	TIGR00645 family protein	NA	K4K6D8	Caulobacter_phage	33.7	1.0e-23
WP_010930555.1|1872751_1874062_+	trigger factor	NA	NA	NA	NA	NA
WP_003812508.1|1874064_1874718_+	ATP-dependent Clp endopeptidase proteolytic subunit ClpP	NA	A0A223W000	Agrobacterium_phage	57.5	6.8e-56
WP_010930556.1|1874822_1876127_+|protease	ATP-dependent Clp protease ATP-binding subunit ClpX	protease	G3M9Z9	Bacillus_virus	53.8	3.2e-129
WP_010930557.1|1876315_1878769_+	endopeptidase La	NA	A0A0R6PGP8	Moraxella_phage	52.0	1.5e-220
WP_019247936.1|1878892_1879843_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930559.1|1880070_1881294_+	CoA transferase	NA	NA	NA	NA	NA
WP_010930560.1|1881359_1882331_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930561.1|1882397_1882799_+	MaoC family dehydratase	NA	NA	NA	NA	NA
WP_015063637.1|1882812_1883616_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003812491.1|1883612_1884044_+	OB-fold domain-containing protein	NA	NA	NA	NA	NA
WP_010930563.1|1884040_1885198_+	thiolase	NA	NA	NA	NA	NA
WP_010930564.1|1885219_1885996_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930565.1|1888208_1888877_+	3-oxoacid CoA-transferase subunit A	NA	NA	NA	NA	NA
WP_003812478.1|1888869_1889511_+	CoA transferase subunit B	NA	NA	NA	NA	NA
WP_019248063.1|1889545_1890277_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247934.1|1890294_1890507_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|1891077_1892028_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930566.1|1893585_1894236_-	transcriptional repressor LexA	NA	A0A2H4JG58	uncultured_Caudovirales_phage	50.7	3.3e-10
WP_010930567.1|1894364_1895567_-	aspartate/tyrosine/aromatic aminotransferase	NA	NA	NA	NA	NA
WP_010930568.1|1895644_1897681_+	excinuclease ABC subunit UvrB	NA	NA	NA	NA	NA
WP_010930569.1|1897933_1898425_+	low molecular weight phosphotyrosine protein phosphatase	NA	NA	NA	NA	NA
WP_003812463.1|1898640_1899153_+	Fe-S cluster assembly transcriptional regulator IscR	NA	NA	NA	NA	NA
WP_010930570.1|1899170_1900382_+	IscS subfamily cysteine desulfurase	NA	NA	NA	NA	NA
WP_003812460.1|1900419_1900830_+	Fe-S cluster assembly scaffold IscU	NA	A0A218MKD1	uncultured_virus	79.0	7.5e-53
WP_003812458.1|1900831_1901155_+	iron-sulfur cluster assembly protein IscA	NA	A0A2H4N7N5	Lake_Baikal_phage	52.8	6.8e-25
WP_003812456.1|1901157_1901670_+	Fe-S protein assembly co-chaperone HscB	NA	NA	NA	NA	NA
WP_010930571.1|1901799_1903662_+	Fe-S protein assembly chaperone HscA	NA	A0A0N9QXN8	Chrysochromulina_ericina_virus	42.4	3.0e-101
WP_003812453.1|1903671_1904013_+	ISC system 2Fe-2S type ferredoxin	NA	NA	NA	NA	NA
WP_003812452.1|1904012_1904207_+	Fe-S cluster assembly protein IscX	NA	NA	NA	NA	NA
WP_010930572.1|1904331_1905225_+	methylglyoxal synthase	NA	NA	NA	NA	NA
WP_005013747.1|1905221_1906172_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930573.1|1906296_1907106_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_005012067.1|1907306_1908257_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929686.1|1908355_1909306_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 17
NZ_CP010964	Bordetella pertussis strain E476 chromosome, complete genome	4102978	2219725	2271362	4102978	transposase	Erysipelothrix_phage(33.33%)	45	NA	NA
WP_010930730.1|2219725_2220676_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930731.1|2221546_2222419_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010930732.1|2222496_2223636_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930733.1|2223994_2225251_+	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA	NA
WP_003816691.1|2225256_2225784_+	aromatic-ring-hydroxylating dioxygenase subunit beta	NA	NA	NA	NA	NA
WP_003816690.1|2225788_2226607_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003816687.1|2226606_2227329_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930735.1|2227350_2227665_+	2Fe-2S iron-sulfur cluster binding domain-containing protein	NA	NA	NA	NA	NA
WP_010930736.1|2227682_2228831_+	CoA transferase	NA	NA	NA	NA	NA
WP_010930737.1|2228861_2229737_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003816680.1|2229733_2231053_-	AMP-binding protein	NA	NA	NA	NA	NA
WP_010930738.1|2231125_2232322_-	acetyl-CoA acetyltransferase	NA	NA	NA	NA	NA
WP_010930739.1|2232332_2233820_-	hydroxymethylglutaryl-CoA synthase family protein	NA	NA	NA	NA	NA
WP_010930740.1|2236414_2237314_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_023852887.1|2237451_2238417_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_005015810.1|2238515_2239466_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930742.1|2239687_2240638_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812024.1|2240634_2240937_-	SelT/SelW/SelH family protein	NA	NA	NA	NA	NA
WP_003812026.1|2241096_2241501_+	group III truncated hemoglobin	NA	NA	NA	NA	NA
WP_010930743.1|2241493_2242720_+	NnrS family protein	NA	NA	NA	NA	NA
WP_003812030.1|2242716_2243163_+	membrane protein	NA	NA	NA	NA	NA
WP_003812032.1|2243232_2244015_+	exodeoxyribonuclease III	NA	NA	NA	NA	NA
WP_010930744.1|2244056_2245562_+	M81 family metallopeptidase	NA	NA	NA	NA	NA
WP_019247851.1|2245847_2246681_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930745.1|2248118_2248940_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_010930746.1|2248958_2249813_-	polysaccharide deacetylase	NA	NA	NA	NA	NA
WP_003812044.1|2249816_2250788_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019247855.1|2251472_2251649_+	winged helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003812172.1|2253173_2253470_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930747.1|2253644_2254997_+	glutathione-disulfide reductase	NA	A0A2K5B2C5	Erysipelothrix_phage	27.4	8.5e-45
WP_010930153.1|2255139_2256156_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010930748.1|2258135_2259149_-	pyridoxamine 5'-phosphate oxidase family protein	NA	NA	NA	NA	NA
WP_010930749.1|2259235_2260141_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003812179.1|2260297_2260642_+	exported protein	NA	NA	NA	NA	NA
WP_010930750.1|2260799_2261258_+	(2Fe-2S)-binding protein	NA	NA	NA	NA	NA
WP_010930751.1|2261271_2263488_+	xanthine dehydrogenase family protein molybdopterin-binding subunit	NA	NA	NA	NA	NA
WP_003812183.1|2263484_2264546_+	XdhC family protein	NA	NA	NA	NA	NA
WP_010930752.1|2264574_2265549_+	AraC family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930753.1|2265500_2266319_-	hypothetical protein	NA	A0A1B1INV8	uncultured_Mediterranean_phage	28.8	2.3e-16
WP_003812191.1|2266331_2266940_-	LON peptidase substrate-binding domain-containing protein	NA	NA	NA	NA	NA
WP_010930754.1|2267114_2267510_+	VOC family protein	NA	NA	NA	NA	NA
WP_010930755.1|2267528_2268968_+	MFS transporter	NA	A0A0M3UL24	Mycobacterium_phage	37.4	7.4e-55
WP_003812199.1|2268996_2269344_+	GFA family protein	NA	NA	NA	NA	NA
WP_005012067.1|2269362_2270313_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929577.1|2270411_2271362_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 18
NZ_CP010964	Bordetella pertussis strain E476 chromosome, complete genome	4102978	2299524	2350278	4102978	protease,transposase,tRNA	Staphylococcus_phage(11.11%)	46	NA	NA
WP_005012067.1|2299524_2300475_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930774.1|2300641_2301616_+	membrane protein	NA	NA	NA	NA	NA
WP_003810379.1|2301612_2301756_+	cbb3-type cytochrome oxidase assembly protein CcoS	NA	NA	NA	NA	NA
WP_003810383.1|2303377_2304040_+	cytochrome-c oxidase, cbb3-type subunit II	NA	NA	NA	NA	NA
WP_003818560.1|2304042_2304219_+	cytochrome oxidase	NA	NA	NA	NA	NA
WP_010930775.1|2304215_2305154_+	cytochrome-c oxidase, cbb3-type subunit III	NA	NA	NA	NA	NA
WP_010930776.1|2305245_2306736_+	cytochrome c oxidase accessory protein CcoG	NA	NA	NA	NA	NA
WP_010930777.1|2306821_2306974_+	lipoprotein	NA	NA	NA	NA	NA
WP_010930778.1|2306987_2307227_+	membrane protein	NA	NA	NA	NA	NA
WP_010930779.1|2307322_2308066_+	sulfite exporter TauE/SafE family protein	NA	NA	NA	NA	NA
WP_010930780.1|2308098_2308599_+	N-acetyltransferase	NA	NA	NA	NA	NA
WP_170954295.1|2308661_2309621_+	ATP-binding cassette domain-containing protein	NA	A0A2H4PQG7	Staphylococcus_phage	33.6	1.7e-23
WP_003810400.1|2309617_2310379_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010930782.1|2310394_2311480_-	AI-2E family transporter	NA	NA	NA	NA	NA
WP_005013747.1|2311679_2312630_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_047122784.1|2312589_2313003_-	transcriptional regulator	NA	A0A222YXG1	Escherichia_phage	59.0	3.8e-36
WP_003816708.1|2313287_2313587_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930783.1|2313996_2316279_-	RNA polymerase sigma factor RpoD	NA	A0A2I7SAT0	Vibrio_phage	30.1	3.2e-36
WP_124740709.1|2316744_2316939_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930784.1|2316964_2318995_-	DNA primase	NA	A0A0K1LMQ9	Caulobacter_phage	41.9	1.0e-65
WP_006218592.1|2319014_2319227_-	30S ribosomal protein S21	NA	NA	NA	NA	NA
WP_003810720.1|2319504_2320044_-	phosphoribosyltransferase	NA	NA	NA	NA	NA
WP_023852902.1|2320157_2321453_-	adenylosuccinate synthase	NA	A0A160ER07	Powai_lake_megavirus	33.5	3.0e-63
WP_010930786.1|2321529_2322687_-	ATP phosphoribosyltransferase regulatory subunit	NA	NA	NA	NA	NA
WP_010930787.1|2322870_2323770_-|protease	protease modulator HflC	protease	NA	NA	NA	NA
WP_010930788.1|2323788_2325093_-|protease	FtsH protease activity modulator HflK	protease	NA	NA	NA	NA
WP_010930789.1|2325058_2326165_-	GTPase HflX	NA	NA	NA	NA	NA
WP_003810707.1|2326252_2326489_-	RNA chaperone Hfq	NA	NA	NA	NA	NA
WP_010930790.1|2326627_2327698_-	histidinol-phosphate transaminase	NA	A0A1X6WGT4	Pacmanvirus	25.7	2.5e-15
WP_003810703.1|2327701_2329057_-	ribosome biogenesis GTPase Der	NA	NA	NA	NA	NA
WP_003810701.1|2329083_2330244_-	outer membrane protein assembly factor BamB	NA	NA	NA	NA	NA
WP_010930791.1|2330246_2330885_-	tetratricopeptide repeat protein	NA	NA	NA	NA	NA
WP_023995843.1|2330886_2332173_-|tRNA	histidine--tRNA ligase	tRNA	NA	NA	NA	NA
WP_010930793.1|2332231_2333527_-	flavodoxin-dependent (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase	NA	NA	NA	NA	NA
WP_003810693.1|2333533_2334040_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_004568542.1|2334036_2335185_-	23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN	NA	NA	NA	NA	NA
WP_003810689.1|2335212_2335638_-	nucleoside-diphosphate kinase	NA	D2E8E1	Anguillid_herpesvirus	43.2	2.1e-21
WP_010930794.1|2335960_2338843_+|tRNA	valine--tRNA ligase	tRNA	A0A1V0SK04	Klosneuvirus	37.1	3.7e-138
WP_023852900.1|2338935_2339691_-	MipA/OmpV family protein	NA	NA	NA	NA	NA
WP_010930796.1|2340456_2341806_+	two-component sensor histidine kinase	NA	NA	NA	NA	NA
WP_005012067.1|2341904_2342855_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930797.1|2345595_2346885_-	D-amino acid dehydrogenase	NA	NA	NA	NA	NA
WP_010930798.1|2347003_2347441_-	Rrf2 family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930799.1|2347484_2348693_-	NO-inducible flavohemoprotein	NA	NA	NA	NA	NA
WP_003810867.1|2348839_2349304_+	GatB/YqeY domain-containing protein	NA	A0A0K2FLI9	Brevibacillus_phage	32.4	3.9e-05
WP_010930800.1|2349327_2350278_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 19
NZ_CP010964	Bordetella pertussis strain E476 chromosome, complete genome	4102978	2731461	2772130	4102978	transposase,tRNA	Salmonella_phage(33.33%)	42	NA	NA
WP_010929591.1|2731461_2732412_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_004567479.1|2732522_2732705_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931004.1|2732804_2733401_-	lipoprotein	NA	NA	NA	NA	NA
WP_010931005.1|2733584_2734676_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003812822.1|2735175_2735586_-	MerR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931006.1|2735644_2735986_-	integration host factor subunit alpha	NA	A0A0H3UZA0	Geobacillus_virus	42.2	2.8e-13
WP_010931007.1|2735991_2738409_-|tRNA	phenylalanine--tRNA ligase subunit beta	tRNA	NA	NA	NA	NA
WP_010926359.1|2738421_2739444_-|tRNA	phenylalanine--tRNA ligase subunit alpha	tRNA	A0A2H4UW22	Bodo_saltans_virus	38.6	1.0e-26
WP_003812832.1|2739518_2739878_-	50S ribosomal protein L20	NA	NA	NA	NA	NA
WP_003812834.1|2739893_2740091_-	50S ribosomal protein L35	NA	NA	NA	NA	NA
WP_010929584.1|2740426_2741377_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003816756.1|2741571_2742021_+	dUTP diphosphatase	NA	S4TNT3	Salmonella_phage	67.2	3.7e-45
WP_010929584.1|2742017_2742968_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931008.1|2743078_2744527_+	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
WP_010931009.1|2744641_2744923_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|2745026_2745977_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003820420.1|2746221_2746935_-	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_019247724.1|2747057_2747285_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_003816758.1|2747579_2748218_-	DedA family protein	NA	NA	NA	NA	NA
WP_010931011.1|2748326_2749361_+	metal-dependent hydrolase	NA	NA	NA	NA	NA
WP_010929591.1|2749357_2750308_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931012.1|2750723_2751248_-	DNA-binding protein	NA	J9Q7G7	Salmonella_phage	32.9	6.5e-09
WP_004567322.1|2751251_2751521_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931013.1|2751719_2752781_-	LacI family DNA-binding transcriptional regulator	NA	NA	NA	NA	NA
WP_010931014.1|2752864_2754499_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	31.1	2.9e-15
WP_010931015.1|2754500_2755304_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931016.1|2755332_2756292_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931017.1|2756295_2757810_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019248147.1|2757846_2758851_-	M20/M25/M40 family metallo-hydrolase	NA	NA	NA	NA	NA
WP_010931018.1|2759282_2759753_-	DUF1801 domain-containing protein	NA	NA	NA	NA	NA
WP_010931019.1|2759788_2760400_-	LysE family translocator	NA	NA	NA	NA	NA
WP_010931020.1|2760430_2761054_-	FMN-binding negative transcriptional regulator	NA	NA	NA	NA	NA
WP_010931021.1|2761134_2762667_+	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
WP_010931022.1|2762701_2763943_-	MFS transporter	NA	NA	NA	NA	NA
WP_010931023.1|2763986_2765018_-	alcohol dehydrogenase catalytic domain-containing protein	NA	A0A2K9L339	Tupanvirus	27.8	1.8e-26
WP_010931024.1|2765014_2766184_-	FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010931025.1|2766177_2766858_-	cupin domain-containing protein	NA	NA	NA	NA	NA
WP_010931026.1|2767019_2767862_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931027.1|2768024_2768996_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010931028.1|2769167_2770046_+	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
WP_010931029.1|2770068_2771139_-	FUSC family protein	NA	NA	NA	NA	NA
WP_005013747.1|2771179_2772130_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 20
NZ_CP010964	Bordetella pertussis strain E476 chromosome, complete genome	4102978	2797228	2858377	4102978	transposase,tRNA	Bacillus_virus(20.0%)	47	NA	NA
WP_005013747.1|2797228_2798179_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931042.1|2798594_2801231_-	AAA family ATPase	NA	NA	NA	NA	NA
WP_014486086.1|2801227_2802352_-	DNA repair exonuclease	NA	NA	NA	NA	NA
WP_019247521.1|2802348_2803731_-	D-amino acid dehydrogenase	NA	NA	NA	NA	NA
WP_003810957.1|2803866_2804334_+	winged helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010931044.1|2804455_2805124_+	DUF502 domain-containing protein	NA	NA	NA	NA	NA
WP_019249399.1|2805253_2806399_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931046.1|2806400_2808131_-	carbohydrate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_004568502.1|2808248_2808557_-	DUF2160 domain-containing protein	NA	NA	NA	NA	NA
WP_010931047.1|2808569_2809382_-	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
WP_010931048.1|2810262_2811351_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	28.1	9.7e-15
WP_010931049.1|2812553_2813342_+	DeoR family transcriptional regulator	NA	A0A077SK06	Escherichia_phage	30.4	2.0e-22
WP_010931050.1|2813381_2814986_+	glycerol-3-phosphate dehydrogenase/oxidase	NA	NA	NA	NA	NA
WP_010931051.1|2815066_2815807_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247407.1|2815814_2816309_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010931052.1|2816681_2817701_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931053.1|2817697_2819080_-	FAD-dependent oxidoreductase	NA	A0A2P0ZL82	Lactobacillus_phage	28.4	7.9e-30
WP_010931054.1|2819112_2819973_-	amidohydrolase	NA	NA	NA	NA	NA
WP_029443733.1|2820976_2821858_+	NRDE family protein	NA	NA	NA	NA	NA
WP_003810921.1|2821916_2822354_+	carboxypeptidase regulatory-like domain-containing protein	NA	NA	NA	NA	NA
WP_003816577.1|2822444_2823416_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931057.1|2823454_2824399_-	dihydrodipicolinate synthase family protein	NA	NA	NA	NA	NA
WP_010931058.1|2824494_2825304_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931059.1|2825380_2825755_-	MAPEG family protein	NA	NA	NA	NA	NA
WP_010931060.1|2825861_2826554_-	DUF2238 domain-containing protein	NA	NA	NA	NA	NA
WP_003810909.1|2826546_2826963_-|tRNA	aminoacyl-tRNA hydrolase	tRNA	NA	NA	NA	NA
WP_010931061.1|2827073_2827706_+	7-carboxy-7-deazaguanine synthase	NA	NA	NA	NA	NA
WP_010931062.1|2827734_2828178_+	6-carboxytetrahydropterin synthase QueD	NA	NA	NA	NA	NA
WP_003810897.1|2828199_2829291_-	TRAP transporter substrate-binding protein DctP	NA	NA	NA	NA	NA
WP_010931063.1|2829345_2830146_-	aldolase	NA	NA	NA	NA	NA
WP_010931064.1|2830281_2830902_+	cupin domain-containing protein	NA	NA	NA	NA	NA
WP_010931065.1|2831041_2831515_+	MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|2832654_2833605_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931066.1|2833601_2841263_-	hemagglutinin repeat-containing protein	NA	A0A0R6PJK4	Moraxella_phage	30.9	7.3e-24
WP_010931067.1|2841503_2845550_-	phosphoribosylformylglycinamidine synthase	NA	A9YX36	Burkholderia_phage	67.4	6.3e-160
WP_003816847.1|2845862_2846444_+	TRAP transporter small permease	NA	NA	NA	NA	NA
WP_010931068.1|2846440_2847739_+	TRAP transporter large permease	NA	NA	NA	NA	NA
WP_010931069.1|2847818_2848847_+	DctP family TRAP transporter solute-binding subunit	NA	NA	NA	NA	NA
WP_005013747.1|2849107_2850058_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|2850156_2851107_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010927663.1|2851103_2852054_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931071.1|2852370_2852976_+	fimbrial major subunit FimX	NA	NA	NA	NA	NA
WP_010931072.1|2853029_2854343_-	phenylacetate--CoA ligase	NA	NA	NA	NA	NA
WP_003813284.1|2854417_2854888_-	hydroxyphenylacetyl-CoA thioesterase PaaI	NA	NA	NA	NA	NA
WP_010931073.1|2854887_2855676_-	2-(1,2-epoxy-1,2-dihydrophenyl)acetyl-CoA isomerase	NA	NA	NA	NA	NA
WP_010931074.1|2855686_2857339_-	phenylacetic acid degradation protein PaaN	NA	NA	NA	NA	NA
WP_010929591.1|2857426_2858377_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 21
NZ_CP010964	Bordetella pertussis strain E476 chromosome, complete genome	4102978	2882302	2939275	4102978	protease,transposase	Pelagibacter_phage(20.0%)	44	NA	NA
WP_005012067.1|2882302_2883253_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931085.1|2883387_2884494_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010931086.1|2884504_2885602_+	GTP 3',8-cyclase MoaA	NA	NA	NA	NA	NA
WP_010931087.1|2885746_2886952_-	molybdopterin molybdotransferase MoeA	NA	NA	NA	NA	NA
WP_010931088.1|2886958_2887480_-	molybdenum cofactor biosynthesis protein B	NA	NA	NA	NA	NA
WP_010931089.1|2887476_2887968_-	molybdenum cofactor biosynthesis protein MoaE	NA	NA	NA	NA	NA
WP_003819740.1|2887964_2888216_-	MoaD/ThiS family protein	NA	NA	NA	NA	NA
WP_003819741.1|2888196_2888682_-	cyclic pyranopterin monophosphate synthase MoaC	NA	NA	NA	NA	NA
WP_010931090.1|2888817_2892279_+	DUF748 domain-containing protein	NA	NA	NA	NA	NA
WP_010931091.1|2892296_2893181_+	dienelactone hydrolase family protein	NA	NA	NA	NA	NA
WP_010931092.1|2893190_2893622_-	lipoprotein	NA	NA	NA	NA	NA
WP_003809348.1|2893868_2894372_+	peroxiredoxin	NA	M1I839	Pelagibacter_phage	44.1	1.8e-24
WP_010931094.1|2894449_2895850_+	MFS transporter	NA	NA	NA	NA	NA
WP_010931095.1|2895924_2896800_-	membrane protein	NA	NA	NA	NA	NA
WP_023853546.1|2896796_2897804_-	biotin synthase BioB	NA	NA	NA	NA	NA
WP_010931097.1|2898271_2898577_+	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
WP_003819753.1|2898667_2899258_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930525.1|2899448_2900465_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010931098.1|2900656_2902993_-	heavy metal translocating P-type ATPase	NA	E4ZFI9	Streptococcus_phage	42.8	3.2e-124
WP_003812014.1|2903075_2903510_+	Cd(II)/Pb(II)-responsive transcriptional regulator	NA	NA	NA	NA	NA
WP_023995489.1|2903608_2904559_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931099.1|2904555_2905350_-	N-formylglutamate deformylase	NA	NA	NA	NA	NA
WP_010931100.1|2905381_2906086_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010931101.1|2906160_2906961_-	SURF1 family protein	NA	NA	NA	NA	NA
WP_003809276.1|2906957_2907365_-	cytochrome o ubiquinol oxidase subunit IV	NA	NA	NA	NA	NA
WP_003819722.1|2907361_2908003_-	cytochrome o ubiquinol oxidase subunit III	NA	NA	NA	NA	NA
WP_010931102.1|2907995_2909996_-	cytochrome o ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
WP_010931103.1|2911256_2912588_+	MFS transporter	NA	NA	NA	NA	NA
WP_005012067.1|2912584_2913535_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931105.1|2915241_2915508_-	accessory factor UbiK family protein	NA	NA	NA	NA	NA
WP_003812839.1|2916215_2916554_+	P-II family nitrogen regulator	NA	NA	NA	NA	NA
WP_010931107.1|2921107_2921710_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931108.1|2921806_2923096_+	MFS transporter	NA	NA	NA	NA	NA
WP_003812846.1|2923153_2923885_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	31.0	1.4e-12
WP_010931109.1|2923881_2924685_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	23.5	7.9e-14
WP_003812851.1|2924681_2925770_-	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
WP_003820410.1|2925766_2926696_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003812857.1|2926844_2927990_-	branched-chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930800.1|2928011_2928962_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931110.1|2929292_2933114_-	trifunctional transcriptional regulator/proline dehydrogenase/L-glutamate gamma-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
WP_010931111.1|2933270_2933939_-	membrane integrity-associated transporter subunit PqiC	NA	NA	NA	NA	NA
WP_010931112.1|2933943_2935617_-	MCE family protein	NA	NA	NA	NA	NA
WP_003820402.1|2935635_2936955_-	PqiA/YebS family transporter subunit	NA	NA	NA	NA	NA
WP_010931114.1|2936959_2939275_-|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	protease	A0A223W0B1	Agrobacterium_phage	41.9	4.1e-164
>prophage 22
NZ_CP010964	Bordetella pertussis strain E476 chromosome, complete genome	4102978	2946774	3073984	4102978	protease,transposase	uncultured_Mediterranean_phage(12.5%)	117	NA	NA
WP_003820400.1|2946774_2947089_-|protease	ATP-dependent Clp protease adapter ClpS	protease	A0A1B1IT64	uncultured_Mediterranean_phage	43.8	1.2e-10
WP_003812875.1|2947316_2947562_+	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	76.6	1.3e-20
WP_003820399.1|2947656_2948175_+	DUF192 domain-containing protein	NA	A0A1B1IUW8	uncultured_Mediterranean_phage	42.2	5.1e-14
WP_010931117.1|2948274_2949480_-	3-oxoadipyl-CoA thiolase	NA	NA	NA	NA	NA
WP_019247560.1|2949595_2950993_-	chloride channel protein	NA	NA	NA	NA	NA
WP_010931119.1|2951109_2951688_-	superoxide dismutase [Fe]	NA	NA	NA	NA	NA
WP_010931120.1|2951760_2953152_-	exodeoxyribonuclease VII large subunit	NA	A0A1V0SD82	Indivirus	32.0	1.4e-29
WP_010931121.1|2953319_2954270_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812889.1|2954550_2955171_+	MotA/TolQ/ExbB proton channel family protein	NA	NA	NA	NA	NA
WP_010931122.1|2955167_2955581_+	biopolymer transporter ExbD	NA	NA	NA	NA	NA
WP_010931123.1|2955577_2956621_+	tetraacyldisaccharide 4'-kinase	NA	NA	NA	NA	NA
WP_003812895.1|2956676_2956865_+	Trm112 family protein	NA	NA	NA	NA	NA
WP_010931124.1|2956874_2957639_+	3-deoxy-manno-octulosonate cytidylyltransferase	NA	NA	NA	NA	NA
WP_010931125.1|2957729_2958386_+	adenylate kinase	NA	NA	NA	NA	NA
WP_010931126.1|2958477_2959236_+	3-hydroxyacyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_010931127.1|2959261_2960863_+	murein biosynthesis integral membrane protein MurJ	NA	NA	NA	NA	NA
WP_010931128.1|2961063_2962068_+	FecR domain-containing protein	NA	NA	NA	NA	NA
WP_003812908.1|2962168_2962432_+	30S ribosomal protein S20	NA	NA	NA	NA	NA
WP_010931129.1|2962549_2963326_-	2-dehydro-3-deoxyglucarate aldolase	NA	NA	NA	NA	NA
WP_005012067.1|2963916_2964867_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931130.1|2967250_2968363_-	Ldh family oxidoreductase	NA	NA	NA	NA	NA
WP_010929584.1|2968419_2969370_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003813070.1|2969578_2969800_-	YgdI/YgdR family lipoprotein	NA	NA	NA	NA	NA
WP_010931131.1|2970013_2971420_-	threonine synthase	NA	NA	NA	NA	NA
WP_003813074.1|2971416_2972721_-	homoserine dehydrogenase	NA	NA	NA	NA	NA
WP_010931132.1|2972717_2973905_-	alanine transaminase	NA	NA	NA	NA	NA
WP_003813077.1|2974121_2974574_+	Xcc1710-like domain-containing protein	NA	NA	NA	NA	NA
WP_003813079.1|2974576_2975041_+	peroxiredoxin	NA	NA	NA	NA	NA
WP_003813082.1|2975120_2976800_+	PhoH family protein	NA	A0A2I7SAD7	Vibrio_phage	36.9	1.5e-70
WP_003813085.1|2976904_2977882_+	4-hydroxythreonine-4-phosphate dehydrogenase PdxA	NA	NA	NA	NA	NA
WP_010931134.1|2977961_2978930_+	bile acid:sodium symporter	NA	NA	NA	NA	NA
WP_003813089.1|2978950_2980324_-	replicative DNA helicase	NA	C7BGG1	Burkholderia_phage	58.2	4.0e-135
WP_003813091.1|2980320_2981157_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931135.1|2981273_2981729_-	50S ribosomal protein L9	NA	NA	NA	NA	NA
WP_003813094.1|2981744_2982017_-	30S ribosomal protein S18	NA	NA	NA	NA	NA
WP_003813095.1|2982109_2982433_-	primosomal replication protein N	NA	NA	NA	NA	NA
WP_010926331.1|2982480_2982861_-	30S ribosomal protein S6	NA	NA	NA	NA	NA
WP_003813103.1|2983080_2983878_-	GTP cyclohydrolase I FolE2	NA	NA	NA	NA	NA
WP_010931136.1|2984034_2985897_-	1-deoxy-D-xylulose-5-phosphate synthase	NA	NA	NA	NA	NA
WP_003820295.1|2985946_2986858_-	polyprenyl synthetase family protein	NA	NA	NA	NA	NA
WP_003813109.1|2986862_2987129_-	exodeoxyribonuclease VII small subunit	NA	NA	NA	NA	NA
WP_010931137.1|2987215_2988085_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931138.1|2988220_2989186_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003813114.1|2989356_2990367_+	acyltransferase family protein	NA	A0A0F6TJ51	Escherichia_coli_O157_typing_phage	24.6	3.6e-16
WP_010931139.1|2990514_2991666_+	aromatic ring-hydroxylating dioxygenase subunit alpha	NA	NA	NA	NA	NA
WP_003814555.1|2992808_2994281_-	magnesium transporter	NA	NA	NA	NA	NA
WP_003814554.1|2994291_2994702_-	acyl-CoA thioesterase	NA	NA	NA	NA	NA
WP_010929220.1|2994765_2995812_-	YeiH family putative sulfate export transporter	NA	NA	NA	NA	NA
WP_003814552.1|2995918_2996797_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931140.1|2996810_2998007_-	amidohydrolase	NA	NA	NA	NA	NA
WP_023852727.1|2998083_2999760_+	long-chain-fatty-acid--CoA ligase	NA	A0A2H4PQU7	Staphylococcus_phage	28.1	9.3e-33
WP_005012067.1|2999756_3000707_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023852715.1|3000827_3001724_-	inositol monophosphatase	NA	NA	NA	NA	NA
WP_003814547.1|3004001_3006227_+	glycoside hydrolase family 31 protein	NA	NA	NA	NA	NA
WP_003814544.1|3006391_3007480_+	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	36.4	8.7e-32
WP_019247918.1|3007436_3008090_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931144.1|3008137_3008935_+	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930176.1|3009466_3010417_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931145.1|3010491_3011646_+	iron-containing alcohol dehydrogenase	NA	NA	NA	NA	NA
WP_010929591.1|3011702_3012653_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814535.1|3012751_3013057_-	antibiotic biosynthesis monooxygenase	NA	NA	NA	NA	NA
WP_003820797.1|3013085_3013520_-	DUF126 domain-containing protein	NA	NA	NA	NA	NA
WP_010931147.1|3013521_3014766_-	aconitase X catalytic domain-containing protein	NA	NA	NA	NA	NA
WP_003820799.1|3014762_3015473_-	FadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_033446288.1|3015487_3016399_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931149.1|3016761_3017166_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247890.1|3017162_3017621_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_019247891.1|3017627_3018536_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_010931150.1|3018532_3019399_+	sugar ABC transporter permease	NA	NA	NA	NA	NA
WP_003814524.1|3019385_3020213_+	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
WP_003820806.1|3020223_3021351_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	32.3	1.2e-23
WP_010931152.1|3023708_3024971_+	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_010931153.1|3024977_3025730_+	DNA-binding protein	NA	NA	NA	NA	NA
WP_019248355.1|3025781_3025967_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003820813.1|3026242_3026707_+	redox-sensitive transcriptional activator SoxR	NA	NA	NA	NA	NA
WP_003820814.1|3026738_3027398_+	DNA-3-methyladenine glycosylase I	NA	NA	NA	NA	NA
WP_010931154.1|3027542_3029651_+	AsmA family protein	NA	NA	NA	NA	NA
WP_010931155.1|3029652_3030273_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931156.1|3030364_3031117_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_019248356.1|3032251_3033376_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247402.1|3033421_3033790_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|3034031_3034982_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247492.1|3036017_3036560_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930176.1|3036945_3037896_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023997028.1|3037892_3038858_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003815281.1|3038927_3039764_+	3-methyl-2-oxobutanoate hydroxymethyltransferase	NA	A0A0P0BXC9	Ostreococcus_lucimarinus_virus	33.3	1.6e-33
WP_010931158.1|3040276_3041386_+	porin	NA	NA	NA	NA	NA
WP_005012067.1|3041447_3042398_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931159.1|3042590_3043373_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010931160.1|3043386_3044136_-	SDR family oxidoreductase	NA	A0A0M4JSW6	Mollivirus	26.4	1.2e-11
WP_010931161.1|3044163_3045510_-	MFS transporter	NA	NA	NA	NA	NA
WP_010931162.1|3045535_3046465_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003819549.1|3046580_3047486_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931163.1|3047503_3048703_-	aspartate/tyrosine/aromatic aminotransferase	NA	NA	NA	NA	NA
WP_010931164.1|3048775_3049468_-	HD domain-containing protein	NA	A0A1D6Y7U0	Golden_Marseillevirus	29.9	4.7e-07
WP_010931165.1|3049516_3051943_-	copper-translocating P-type ATPase	NA	A0A218MNH6	uncultured_virus	33.8	1.2e-86
WP_010931070.1|3051987_3052938_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003809026.1|3053154_3053523_-	DUF861 domain-containing protein	NA	NA	NA	NA	NA
WP_003809025.1|3053808_3054735_+	VOC family protein	NA	NA	NA	NA	NA
WP_010931167.1|3054778_3055789_+	zinc-binding dehydrogenase	NA	NA	NA	NA	NA
WP_010931168.1|3055785_3056220_+	PaaI family thioesterase	NA	NA	NA	NA	NA
WP_010931169.1|3057345_3058134_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	40.0	1.1e-33
WP_010931170.1|3058143_3058926_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931171.1|3058929_3060021_-	DUF2817 domain-containing protein	NA	NA	NA	NA	NA
WP_010931172.1|3060126_3061602_+	acyl--CoA ligase	NA	Q75ZG1	Hepacivirus	25.6	3.0e-35
WP_010931173.1|3061743_3062292_+	cysteine dioxygenase family protein	NA	NA	NA	NA	NA
WP_003809010.1|3062307_3062769_-	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931174.1|3062869_3063859_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931175.1|3064157_3064859_+	riboflavin synthase	NA	NA	NA	NA	NA
WP_010931176.1|3064897_3066271_-	amidase	NA	NA	NA	NA	NA
WP_023997744.1|3066309_3067596_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931177.1|3068482_3069385_+	transcriptional regulator GcvA	NA	NA	NA	NA	NA
WP_010931178.1|3069332_3070553_-	MFS transporter	NA	NA	NA	NA	NA
WP_010931179.1|3070549_3071059_-	nucleoside deaminase	NA	NA	NA	NA	NA
WP_010926062.1|3071048_3071744_-	ankyrin repeat domain-containing protein	NA	NA	NA	NA	NA
WP_010931181.1|3071814_3072684_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929591.1|3073033_3073984_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 23
NZ_CP010964	Bordetella pertussis strain E476 chromosome, complete genome	4102978	3147306	3211141	4102978	protease,transposase,tRNA	Pseudomonas_phage(30.0%)	55	NA	NA
WP_005015810.1|3147306_3148257_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_047122802.1|3148402_3149527_-	bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD	NA	A0A2H4PQS8	Staphylococcus_phage	33.3	3.8e-38
WP_023853315.1|3149732_3150296_+	isochorismatase family protein	NA	NA	NA	NA	NA
WP_003814871.1|3151290_3151773_-	transcriptional repressor NrdR	NA	NA	NA	NA	NA
WP_003814873.1|3151930_3153178_-	serine hydroxymethyltransferase	NA	A0A219YCZ0	Aeromonas_phage	52.7	1.1e-99
WP_003820605.1|3153398_3154055_-	YbhB/YbcL family Raf kinase inhibitor-like protein	NA	NA	NA	NA	NA
WP_003814877.1|3154090_3155320_-|tRNA	tyrosine--tRNA ligase	tRNA	NA	NA	NA	NA
WP_005012067.1|3155587_3156538_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931221.1|3156629_3158045_+	peptidoglycan DD-metalloendopeptidase family protein	NA	A8ATH6	Listeria_phage	46.9	1.9e-18
WP_010931222.1|3158050_3159187_+	anhydro-N-acetylmuramic acid kinase	NA	NA	NA	NA	NA
WP_003814883.1|3159256_3159628_-	iron-sulfur cluster insertion protein ErpA	NA	A0A2H4N7M3	Lake_Baikal_phage	56.9	4.7e-30
WP_010931223.1|3159715_3160462_-	membrane protein	NA	NA	NA	NA	NA
WP_003820599.1|3160498_3161563_-	N-acetyl-gamma-glutamyl-phosphate reductase	NA	NA	NA	NA	NA
WP_010931224.1|3161751_3162144_-	30S ribosomal protein S9	NA	NA	NA	NA	NA
WP_010927106.1|3162153_3162582_-	50S ribosomal protein L13	NA	NA	NA	NA	NA
WP_004567739.1|3162877_3163975_-	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_004567741.1|3164316_3165681_-|protease	metalloprotease PmbA	protease	NA	NA	NA	NA
WP_023853313.1|3165739_3166291_+	ribosome-associated protein	NA	NA	NA	NA	NA
WP_010931226.1|3166304_3166979_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_010931227.1|3168235_3169045_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	37.9	2.6e-33
WP_010931228.1|3169047_3169884_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_003820594.1|3169898_3170591_+	cysteine hydrolase	NA	NA	NA	NA	NA
WP_003820593.1|3170602_3170992_-	VOC family protein	NA	NA	NA	NA	NA
WP_003820592.1|3171097_3172486_-	ATP-dependent RNA helicase DbpA	NA	A0A0N9Q9J4	Chrysochromulina_ericina_virus	33.5	4.6e-54
WP_010931229.1|3172602_3174099_-	membrane protein	NA	NA	NA	NA	NA
WP_010931230.1|3174395_3175070_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|3175168_3176119_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931231.1|3176115_3178575_-	bifunctional acetate--CoA ligase family protein/GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_003814917.1|3178671_3180117_+|tRNA	glutamate--tRNA ligase	tRNA	NA	NA	NA	NA
WP_010931233.1|3180120_3181308_-	MFS transporter	NA	NA	NA	NA	NA
WP_023998238.1|3181376_3181886_-	lipoprotein	NA	NA	NA	NA	NA
WP_003814925.1|3182087_3182540_-	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247415.1|3183101_3186164_+	indolepyruvate ferredoxin oxidoreductase family protein	NA	NA	NA	NA	NA
WP_010931235.1|3186469_3189397_+	ribonucleoside-diphosphate reductase subunit alpha	NA	A0A2H4P767	Pseudomonas_phage	43.9	3.4e-171
WP_003814929.1|3189418_3190615_+	ribonucleotide-diphosphate reductase subunit beta	NA	A0A2H4P762	Pseudomonas_phage	28.9	1.0e-33
WP_010931236.1|3190932_3191460_+	histone H1-like DNA-binding protein	NA	NA	NA	NA	NA
WP_010931237.1|3191598_3192174_+	YggT family protein	NA	NA	NA	NA	NA
WP_010931238.1|3192181_3193645_-	D-alanine--poly(phosphoribitol) ligase	NA	A0A2K9L3I8	Tupanvirus	25.1	7.3e-26
WP_010931239.1|3193655_3194783_-	membrane-bound O-acyltransferase	NA	A0A125RNP0	Pseudomonas_phage	30.8	3.7e-25
WP_003814941.1|3194912_3196040_-	D-alanyl-lipoteichoic acid biosynthesis protein DltD	NA	NA	NA	NA	NA
WP_003814943.1|3196065_3196305_-	acyl carrier protein	NA	NA	NA	NA	NA
WP_010931240.1|3196585_3197089_-	glycine zipper 2TM domain-containing protein	NA	NA	NA	NA	NA
WP_010931241.1|3197261_3198203_-	carbohydrate kinase family protein	NA	NA	NA	NA	NA
WP_010931242.1|3198214_3199312_-	DUF3426 domain-containing protein	NA	NA	NA	NA	NA
WP_003814951.1|3200277_3201624_-	acetyl-CoA carboxylase biotin carboxylase subunit	NA	NA	NA	NA	NA
WP_003814952.1|3201633_3202083_-	acetyl-CoA carboxylase biotin carboxyl carrier protein	NA	NA	NA	NA	NA
WP_003814953.1|3202172_3202607_-	type II 3-dehydroquinate dehydratase	NA	NA	NA	NA	NA
WP_023853327.1|3202685_3203234_-	TlpA family protein disulfide reductase	NA	NA	NA	NA	NA
WP_003814955.1|3203316_3204687_+	UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase	NA	NA	NA	NA	NA
WP_010931244.1|3204697_3205291_+	alpha/beta fold hydrolase	NA	NA	NA	NA	NA
WP_010931245.1|3205362_3207246_+	RNB domain-containing ribonuclease	NA	NA	NA	NA	NA
WP_010931246.1|3207283_3208183_+	TonB family protein	NA	NA	NA	NA	NA
WP_010931247.1|3208179_3209043_+	shikimate dehydrogenase	NA	NA	NA	NA	NA
WP_005012067.1|3209141_3210092_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929591.1|3210190_3211141_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 25
NZ_CP010964	Bordetella pertussis strain E476 chromosome, complete genome	4102978	3392198	3446988	4102978	transposase	Staphylococcus_phage(33.33%)	49	NA	NA
WP_010929956.1|3392198_3393149_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931336.1|3393553_3394198_-	urease accessory protein UreG	NA	NA	NA	NA	NA
WP_019247677.1|3394222_3394807_-	urease accessory protein UreF	NA	NA	NA	NA	NA
WP_014905506.1|3394907_3395525_-	urease accessory protein UreE	NA	NA	NA	NA	NA
WP_010931337.1|3395527_3397243_-	urease subunit alpha	NA	NA	NA	NA	NA
WP_010931338.1|3397239_3397548_-	urease subunit beta	NA	NA	NA	NA	NA
WP_003814828.1|3397564_3398182_-	HupE/UreJ family protein	NA	NA	NA	NA	NA
WP_010931340.1|3398226_3398529_-	urease subunit gamma	NA	NA	NA	NA	NA
WP_003814832.1|3398629_3399484_-	urease accessory protein UreD	NA	NA	NA	NA	NA
WP_124740609.1|3399671_3399896_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929281.1|3400065_3400338_+	MerR family DNA-binding transcriptional regulator	NA	NA	NA	NA	NA
WP_010929282.1|3400755_3401163_-	GFA family protein	NA	NA	NA	NA	NA
WP_010931341.1|3401532_3402327_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010927102.1|3402427_3403663_+	methylaspartate ammonia-lyase	NA	NA	NA	NA	NA
WP_003814852.1|3403731_3404748_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931342.1|3404759_3406136_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_003814856.1|3406132_3407329_+	MFS transporter	NA	NA	NA	NA	NA
WP_003814858.1|3407325_3408864_-	SpoVR family protein	NA	NA	NA	NA	NA
WP_010931343.1|3408860_3410120_-	YeaH/YhbH family protein	NA	NA	NA	NA	NA
WP_010929591.1|3412060_3413011_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_077069004.1|3413109_3414060_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931344.1|3414826_3415921_-	CoA transferase	NA	NA	NA	NA	NA
WP_010931345.1|3415913_3417248_-	AMP-binding protein	NA	NA	NA	NA	NA
WP_003808193.1|3417201_3417885_-	TetR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003808195.1|3417910_3419074_-	acyl-CoA dehydrogenase family protein	NA	NA	NA	NA	NA
WP_004566224.1|3419070_3420072_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010931346.1|3420071_3420944_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010931347.1|3420940_3421690_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	27.8	1.9e-09
WP_010931348.1|3421686_3422478_-	ATP-binding cassette domain-containing protein	NA	A0A1M7XV31	Cedratvirus	29.4	1.7e-08
WP_010931349.1|3422474_3423614_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_047122778.1|3423889_3424675_+	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_014486103.1|3424708_3425491_+	crotonase/enoyl-CoA hydratase family protein	NA	NA	NA	NA	NA
WP_010931351.1|3425494_3425884_+	OB-fold domain-containing protein	NA	NA	NA	NA	NA
WP_010931352.1|3427023_3427887_+	MaoC family dehydratase N-terminal domain-containing protein	NA	NA	NA	NA	NA
WP_010931353.1|3427922_3429011_+	NAD(P)H-binding protein	NA	NA	NA	NA	NA
WP_005013747.1|3429007_3429958_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247959.1|3430311_3433290_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003818344.1|3434216_3435095_+	fatty acid desaturase	NA	NA	NA	NA	NA
WP_005013747.1|3437043_3437994_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931354.1|3437990_3438458_-	ribonuclease HI	NA	J9Q745	Salmonella_phage	50.7	5.6e-36
WP_010931355.1|3438500_3439271_-	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_010927090.1|3439291_3440092_+	hydroxyacylglutathione hydrolase	NA	NA	NA	NA	NA
WP_010931356.1|3440102_3441512_+	transglycosylase SLT domain-containing protein	NA	NA	NA	NA	NA
WP_003814739.1|3441606_3442392_+	enoyl-ACP reductase FabI	NA	NA	NA	NA	NA
WP_010930525.1|3442631_3443648_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003814742.1|3443755_3444148_-	OsmC family protein	NA	NA	NA	NA	NA
WP_010931357.1|3444285_3444966_+	tellurite resistance TerB family protein	NA	NA	NA	NA	NA
WP_023994844.1|3444970_3445942_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931359.1|3446037_3446988_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 26
NZ_CP010964	Bordetella pertussis strain E476 chromosome, complete genome	4102978	3453142	3512474	4102978	transposase,tRNA	Acinetobacter_phage(27.27%)	48	NA	NA
WP_003820957.1|3453142_3454906_+|tRNA	glutamine--tRNA ligase/YqeY domain fusion protein	tRNA	A0A222YZ70	Escherichia_phage	50.0	5.0e-162
WP_010931362.1|3455017_3455896_+	septum site-determining protein MinC	NA	NA	NA	NA	NA
WP_003814250.1|3456008_3456824_+	septum site-determining protein MinD	NA	NA	NA	NA	NA
WP_003814252.1|3456827_3457079_+	cell division topological specificity factor MinE	NA	NA	NA	NA	NA
WP_010931363.1|3457163_3458180_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003814254.1|3458510_3458732_-	glycine zipper 2TM domain-containing protein	NA	NA	NA	NA	NA
WP_019247693.1|3461092_3462010_-	DMT family transporter	NA	NA	NA	NA	NA
WP_019247692.1|3462507_3463716_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931365.1|3463795_3465367_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003814275.1|3465484_3466420_-	glycosyltransferase family 2 protein	NA	NA	NA	NA	NA
WP_003814277.1|3466608_3467553_+	LysR family transcriptional regulator	NA	A0A2P0ZL89	Lactobacillus_phage	23.2	8.4e-07
WP_003814283.1|3468120_3473838_+	excinuclease ABC subunit UvrA	NA	A0A1B1IVR3	uncultured_Mediterranean_phage	39.5	1.0e-195
WP_010931367.1|3473843_3474971_+	aminodeoxychorismate synthase component I	NA	S4VT78	Pandoravirus	37.8	3.8e-38
WP_003814287.1|3475026_3475653_+	aminotransferase class IV	NA	NA	NA	NA	NA
WP_010929632.1|3475924_3476941_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010927020.1|3477071_3477782_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010931368.1|3477778_3478768_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931369.1|3478863_3480495_+	AMP-binding protein	NA	NA	NA	NA	NA
WP_010931370.1|3480497_3481235_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247745.1|3481390_3482263_-|tRNA	tRNA threonylcarbamoyladenosine dehydratase	tRNA	NA	NA	NA	NA
WP_003814298.1|3482531_3483752_+	MFS transporter	NA	NA	NA	NA	NA
WP_003814300.1|3483748_3484408_+	gamma-glutamylcyclotransferase	NA	NA	NA	NA	NA
WP_003814302.1|3484479_3485112_+	pyridoxamine 5'-phosphate oxidase	NA	NA	NA	NA	NA
WP_010931372.1|3485141_3485660_+	flavin reductase family protein	NA	NA	NA	NA	NA
WP_010931373.1|3485670_3486780_+	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_003814312.1|3486826_3487681_+	formyltetrahydrofolate deformylase	NA	NA	NA	NA	NA
WP_010931374.1|3487682_3488585_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|3489807_3490758_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014905441.1|3492511_3493501_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247413.1|3493497_3493656_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931375.1|3493676_3494465_-	indole-3-glycerol phosphate synthase TrpC	NA	A0A0P0IR83	Acinetobacter_phage	53.0	5.1e-66
WP_003817833.1|3494461_3495493_-	anthranilate phosphoribosyltransferase	NA	A0A0N7IRD9	Acinetobacter_phage	42.7	7.4e-73
WP_003815390.1|3495511_3496075_-	aminodeoxychorismate/anthranilate synthase component II	NA	A0A0P0IKJ1	Acinetobacter_phage	62.1	1.1e-65
WP_010931376.1|3496130_3497651_-	anthranilate synthase component I	NA	S4VT78	Pandoravirus	32.1	9.0e-43
WP_010931377.1|3497914_3498619_-	phosphoglycolate phosphatase	NA	NA	NA	NA	NA
WP_003815384.1|3498626_3499364_-	ribulose-phosphate 3-epimerase	NA	NA	NA	NA	NA
WP_003815381.1|3499469_3499844_+	Co2+/Mg2+ efflux protein ApaG	NA	NA	NA	NA	NA
WP_003815379.1|3499886_3501176_+	murein transglycosylase A	NA	NA	NA	NA	NA
WP_010931378.1|3501172_3502342_+	UbiH/UbiF family hydroxylase	NA	NA	NA	NA	NA
WP_010931379.1|3502338_3503178_+	thiol:disulfide interchange protein DsbC	NA	NA	NA	NA	NA
WP_010931380.1|3503237_3504173_+	D-2-hydroxyacid dehydrogenase family protein	NA	A0A1J0F959	Only_Syngen_Nebraska_virus	27.7	6.4e-15
WP_005012067.1|3504185_3505136_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931381.1|3505234_3506197_-|tRNA	tRNA 2-thiocytidine(32) synthetase TtcA	tRNA	A0A0U2S5Z2	Escherichia_phage	64.5	4.6e-93
WP_003817821.1|3506228_3506588_-	dihydroneopterin aldolase	NA	NA	NA	NA	NA
WP_010931382.1|3506712_3507615_+	NAD(P)/FAD-dependent oxidoreductase	NA	G3MA85	Bacillus_virus	24.0	1.9e-08
WP_010931383.1|3507616_3509389_-	M61 family metallopeptidase	NA	NA	NA	NA	NA
WP_003815367.1|3509423_3510200_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_005012808.1|3511523_3512474_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 27
NZ_CP010964	Bordetella pertussis strain E476 chromosome, complete genome	4102978	3527412	3586148	4102978	transposase,tRNA	Planktothrix_phage(50.0%)	49	NA	NA
WP_005012808.1|3527412_3528363_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931392.1|3528491_3529625_-	M20 family metallopeptidase	NA	NA	NA	NA	NA
WP_010931393.1|3529668_3530574_-	hydrolase	NA	NA	NA	NA	NA
WP_023852622.1|3530576_3532277_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	32.7	1.0e-15
WP_010931394.1|3532273_3533194_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_003817805.1|3533201_3534179_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931395.1|3534237_3535272_-	succinylglutamate desuccinylase/aspartoacylase family protein	NA	NA	NA	NA	NA
WP_003815317.1|3537246_3537483_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931396.1|3537609_3538473_-	NAD(P)H-hydrate dehydratase	NA	NA	NA	NA	NA
WP_003815315.1|3538561_3539383_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003815313.1|3539462_3540200_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010931397.1|3540196_3541189_-	nitronate monooxygenase	NA	NA	NA	NA	NA
WP_003817794.1|3541302_3541965_+	TetR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931399.1|3542009_3543158_+	acyl-CoA dehydrogenase family protein	NA	NA	NA	NA	NA
WP_010931400.1|3545481_3546432_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931401.1|3546772_3547723_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|3547821_3548772_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_029443756.1|3549068_3549566_+	cupredoxin family protein	NA	NA	NA	NA	NA
WP_010931403.1|3549608_3551384_+	copper resistance system multicopper oxidase	NA	NA	NA	NA	NA
WP_010931404.1|3551391_3552258_+	copper resistance protein B	NA	NA	NA	NA	NA
WP_019249391.1|3552264_3552999_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010931406.1|3554168_3554963_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003815296.1|3555252_3555843_+	cysteine dioxygenase	NA	NA	NA	NA	NA
WP_010931407.1|3555876_3557205_-	amidase	NA	NA	NA	NA	NA
WP_010931408.1|3557279_3558425_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_005012067.1|3558536_3559487_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814437.1|3560218_3560596_+	4a-hydroxytetrahydrobiopterin dehydratase	NA	NA	NA	NA	NA
WP_003814436.1|3560580_3561282_-	membrane protein	NA	NA	NA	NA	NA
WP_010931409.1|3561425_3562118_-	nucleotidyltransferase family protein	NA	NA	NA	NA	NA
WP_010931410.1|3562117_3563221_-	phosphotransferase	NA	NA	NA	NA	NA
WP_010931411.1|3563330_3565703_+	LPS-assembly protein LptD	NA	NA	NA	NA	NA
WP_010931412.1|3565699_3567259_+	chaperone SurA	NA	NA	NA	NA	NA
WP_010931413.1|3567283_3568081_+	16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA	NA	NA	NA	NA	NA
WP_010931414.1|3568112_3569258_-	glycerate kinase	NA	W6LM47	Streptococcus_phage	42.2	1.7e-41
WP_003814419.1|3569362_3570805_+	pyruvate kinase	NA	NA	NA	NA	NA
WP_010929184.1|3570807_3572037_-	spore maturation protein	NA	NA	NA	NA	NA
WP_005012808.1|3574174_3575125_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247922.1|3576254_3576812_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019247923.1|3576787_3577138_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003814657.1|3577306_3578101_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.6	2.4e-15
WP_010931416.1|3578097_3579147_-	iron ABC transporter permease	NA	NA	NA	NA	NA
WP_003814652.1|3579146_3579836_-	tol-pal system protein YbgF	NA	NA	NA	NA	NA
WP_003814650.1|3579922_3580420_-	peptidoglycan-associated lipoprotein Pal	NA	NA	NA	NA	NA
WP_010931417.1|3580451_3581768_-	Tol-Pal system protein TolB	NA	NA	NA	NA	NA
WP_010931418.1|3581784_3582759_-	cell envelope integrity protein TolA	NA	NA	NA	NA	NA
WP_003814643.1|3582795_3583254_-	protein TolR	NA	NA	NA	NA	NA
WP_003814641.1|3583253_3583934_-	protein TolQ	NA	NA	NA	NA	NA
WP_010931419.1|3583936_3584365_-	tol-pal system-associated acyl-CoA thioesterase	NA	NA	NA	NA	NA
WP_003814636.1|3584417_3586148_-|tRNA	proline--tRNA ligase	tRNA	A0A2K9L3R9	Tupanvirus	29.4	4.6e-11
>prophage 28
NZ_CP010964	Bordetella pertussis strain E476 chromosome, complete genome	4102978	3592314	3639417	4102978	protease,transposase,terminase,tRNA,tail	uncultured_Caudovirales_phage(21.05%)	50	NA	NA
WP_010931429.1|3592314_3596271_-	DUF1983 domain-containing protein	NA	A0A0B5A1N2	Achromobacter_phage	40.8	3.9e-215
WP_010931430.1|3596263_3596653_-	C40 family peptidase	NA	A0A0G3EYJ9	Achromobacter_phage	50.0	3.0e-35
WP_010931431.1|3596649_3597183_-	DUF1833 family protein	NA	A5A3Q9	Burkholderia_phage	46.9	1.1e-40
WP_010931432.1|3597250_3597610_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931433.1|3597619_3600232_-|tail	phage tail tape measure protein	tail	A0A2H4J107	uncultured_Caudovirales_phage	38.6	4.9e-105
WP_010931434.1|3600257_3600548_-	DUF1799 domain-containing protein	NA	A0A2H4JBP7	uncultured_Caudovirales_phage	45.2	3.7e-14
WP_003813412.1|3600565_3600895_-|tail	phage tail assembly chaperone	tail	A0A2H4J121	uncultured_Caudovirales_phage	44.0	2.9e-15
WP_010931435.1|3600904_3601423_-|tail	phage tail protein	tail	A0A1S5R1H0	Pseudomonas_phage	38.3	5.4e-24
WP_010931436.1|3601677_3602178_-	HNH endonuclease	NA	A0A1I9SEX5	Klebsiella_phage	45.1	4.4e-31
WP_010931437.1|3602185_3602608_-	DUF4128 domain-containing protein	NA	NA	NA	NA	NA
WP_010931438.1|3602604_3603003_-	hypothetical protein	NA	I6PCW1	Cronobacter_phage	38.0	4.2e-16
WP_010931439.1|3602999_3603395_-	hypothetical protein	NA	A0A2D2W284	Stenotrophomonas_phage	35.0	7.8e-07
WP_162096760.1|3603394_3603583_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247789.1|3603596_3604079_-	hypothetical protein	NA	A0A2H4JE38	uncultured_Caudovirales_phage	37.1	1.8e-13
WP_010931442.1|3604141_3604393_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|3605067_3606018_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931443.1|3607495_3608098_-	hypothetical protein	NA	R9TF81	Synechococcus_phage	43.6	7.9e-27
WP_010931444.1|3608220_3608463_-	hypothetical protein	NA	A0A0H5AUE5	Pseudomonas_phage	53.2	5.6e-16
WP_010931445.1|3608468_3609524_-	hypothetical protein	NA	A0A0H5BBX3	Pseudomonas_phage	50.6	2.6e-97
WP_010931446.1|3609552_3610971_-	DUF4055 domain-containing protein	NA	R9TF43	Synechococcus_phage	42.1	2.2e-99
WP_010931447.1|3610973_3612251_-|terminase	terminase	terminase	A0A1B1P9C9	Acinetobacter_phage	64.7	2.4e-150
WP_019247942.1|3612237_3612723_-|transposase	transposase	transposase	C7U0W1	Enterobacteria_phage	61.5	7.3e-39
WP_005012067.1|3613362_3614313_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_161633094.1|3614569_3615259_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023853179.1|3615251_3615503_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010931451.1|3616057_3616669_+	S24 family peptidase	NA	NA	NA	NA	NA
WP_019247378.1|3616740_3616947_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|3617198_3618149_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931453.1|3618247_3619048_-	EI24 domain-containing protein	NA	NA	NA	NA	NA
WP_003814185.1|3619109_3619493_+	thioredoxin family protein	NA	NA	NA	NA	NA
WP_010931454.1|3619504_3620938_-	DEAD/DEAH box helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	34.4	1.5e-52
WP_003814188.1|3621144_3621474_-	AzlD domain-containing protein	NA	NA	NA	NA	NA
WP_010931455.1|3621476_3622226_-	AzlC family ABC transporter permease	NA	NA	NA	NA	NA
WP_010931456.1|3622408_3623329_+	branched-chain amino acid transaminase	NA	NA	NA	NA	NA
WP_003814195.1|3623375_3623588_+	zinc-finger domain-containing protein	NA	NA	NA	NA	NA
WP_010931457.1|3623610_3624033_+	nuclear transport factor 2 family protein	NA	NA	NA	NA	NA
WP_010931458.1|3624049_3625150_+	alpha/beta fold hydrolase	NA	NA	NA	NA	NA
WP_010931459.1|3625246_3626764_-|protease	M48 family metalloprotease	protease	NA	NA	NA	NA
WP_003814203.1|3626839_3627679_+	UTP--glucose-1-phosphate uridylyltransferase GalU	NA	A0A127AW70	Bacillus_phage	48.9	1.1e-66
WP_003814205.1|3627700_3628582_-	cytochrome c oxidase assembly protein	NA	NA	NA	NA	NA
WP_003814206.1|3628663_3629758_-	porin	NA	NA	NA	NA	NA
WP_076879617.1|3630051_3631002_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_041166340.1|3631076_3632018_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|3632116_3633067_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814209.1|3633150_3633510_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931461.1|3633891_3634929_-	sodium:calcium antiporter	NA	NA	NA	NA	NA
WP_010931462.1|3635245_3636586_+	aminopeptidase P N-terminal domain-containing protein	NA	NA	NA	NA	NA
WP_010931463.1|3636595_3637048_-	membrane protein	NA	NA	NA	NA	NA
WP_003814217.1|3637144_3638326_+	UbiH/UbiF/VisC/COQ6 family ubiquinone biosynthesis hydroxylase	NA	NA	NA	NA	NA
WP_023995141.1|3638391_3639417_+|tRNA	tRNA dihydrouridine synthase DusB	tRNA	NA	NA	NA	NA
>prophage 29
NZ_CP010964	Bordetella pertussis strain E476 chromosome, complete genome	4102978	3706165	3747072	4102978	transposase	uncultured_virus(25.0%)	40	NA	NA
WP_005013747.1|3706165_3707116_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931499.1|3707508_3708516_-	phosphate/phosphite/phosphonate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003808594.1|3708664_3709492_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931500.1|3709497_3710295_-	HAD-IIB family hydrolase	NA	NA	NA	NA	NA
WP_010931501.1|3710440_3711616_+	bifunctional 3,4-dihydroxy-2-butanone-4-phosphate synthase/GTP cyclohydrolase II	NA	M4QPK3	Synechococcus_phage	40.3	4.5e-34
WP_010931502.1|3711629_3712151_+	6,7-dimethyl-8-ribityllumazine synthase	NA	A0A2I2L4Y7	Orpheovirus	34.5	1.8e-11
WP_003808599.1|3712158_3712623_+	transcription antitermination factor NusB	NA	NA	NA	NA	NA
WP_010931503.1|3712662_3713679_+	thiamine-phosphate kinase	NA	NA	NA	NA	NA
WP_019247451.1|3713675_3714218_+	phosphatidylglycerophosphatase A	NA	NA	NA	NA	NA
WP_003808604.1|3714214_3714781_+	CinA family protein	NA	B5TK85	Pseudomonas_phage	40.5	3.4e-19
WP_003808606.1|3714918_3715740_-	orotidine-5'-phosphate decarboxylase	NA	NA	NA	NA	NA
WP_010931505.1|3715747_3717067_-	FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_003808610.1|3717117_3717516_-	diacylglycerol kinase	NA	NA	NA	NA	NA
WP_003808614.1|3717604_3718495_-	YihY/virulence factor BrkB family protein	NA	NA	NA	NA	NA
WP_010931506.1|3718796_3721829_+	serum resistance autotransporter BrkA	NA	NA	NA	NA	NA
WP_010931507.1|3721932_3723576_-	chaperonin GroEL	NA	A0A219YK78	uncultured_virus	59.7	3.9e-169
WP_003808621.1|3723608_3723896_-	co-chaperone GroES	NA	A0A221S4A8	uncultured_virus	52.1	1.2e-20
WP_010926000.1|3724229_3724859_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003808629.1|3724855_3725557_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931508.1|3725605_3726241_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931509.1|3726284_3727994_-	FAD-dependent oxidoreductase	NA	A0A2P0ZL82	Lactobacillus_phage	27.4	2.7e-27
WP_010931510.1|3728055_3729006_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931511.1|3729611_3730625_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931512.1|3730672_3732418_+	FAD-dependent oxidoreductase	NA	A0A2P0ZL82	Lactobacillus_phage	25.1	6.5e-21
WP_005013747.1|3732648_3733599_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003813004.1|3733680_3734328_+	isochorismatase family protein	NA	NA	NA	NA	NA
WP_010931513.1|3734342_3735770_-	diguanylate cyclase	NA	A0A127AWB9	Bacillus_phage	40.0	6.5e-19
WP_003813001.1|3735935_3736541_-	HD domain-containing protein	NA	NA	NA	NA	NA
WP_050849411.1|3736546_3736747_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|3736828_3737779_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_153302794.1|3737793_3737949_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003812997.1|3737970_3738237_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931514.1|3738602_3738803_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003812993.1|3738819_3739077_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931515.1|3740690_3741665_-	L-histidine N(alpha)-methyltransferase	NA	NA	NA	NA	NA
WP_010931516.1|3741996_3742596_+	membrane protein	NA	NA	NA	NA	NA
WP_010928587.1|3742583_3744014_+	cardiolipin synthase B	NA	NA	NA	NA	NA
WP_005012808.1|3744023_3744974_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|3745072_3746023_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|3746121_3747072_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
