The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP010847	Bordetella pertussis strain H622 chromosome, complete genome	4107431	27282	70036	4107431	tRNA,transposase	Synechococcus_phage(50.0%)	41	NA	NA
WP_010929577.1|27282_28233_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023995007.1|28314_28650_-	CoA transferase	NA	NA	NA	NA	NA
WP_010929578.1|28674_29109_-	OB-fold domain-containing protein	NA	NA	NA	NA	NA
WP_019247164.1|29141_30359_-	thiolase family protein	NA	NA	NA	NA	NA
WP_010929580.1|30364_30862_-	MaoC family dehydratase	NA	NA	NA	NA	NA
WP_019247165.1|31069_32005_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929582.1|32214_33006_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010929583.1|33048_34470_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_010929584.1|34625_35576_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814398.1|35572_36763_-	MFS transporter	NA	NA	NA	NA	NA
WP_010929585.1|37012_37924_+|tRNA	glycine--tRNA ligase subunit alpha	tRNA	NA	NA	NA	NA
WP_010929586.1|37925_40064_+|tRNA	glycine--tRNA ligase subunit beta	tRNA	NA	NA	NA	NA
WP_003814404.1|40060_40600_+	D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase	NA	NA	NA	NA	NA
WP_003814405.1|40603_41332_+	1-acyl-sn-glycerol-3-phosphate acyltransferase	NA	NA	NA	NA	NA
WP_010929587.1|41318_42212_+	M48 family metallopeptidase	NA	NA	NA	NA	NA
WP_019247766.1|42282_42678_+	lactoylglutathione lyase	NA	NA	NA	NA	NA
WP_003814412.1|42687_43218_+	peptide deformylase	NA	E3SLL2	Synechococcus_phage	35.4	3.7e-12
WP_010929588.1|43663_44614_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929589.1|45200_45749_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815265.1|45720_45957_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003815255.1|46084_46978_+	AEC family transporter	NA	NA	NA	NA	NA
WP_010929590.1|48147_49395_+	homoserine O-acetyltransferase	NA	NA	NA	NA	NA
WP_003817748.1|49391_50006_+	methionine biosynthesis protein MetW	NA	NA	NA	NA	NA
WP_010929591.1|50141_51092_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_029443813.1|51134_52391_+	muropeptide transporter	NA	NA	NA	NA	NA
WP_010929592.1|53622_54357_-	aspartate/glutamate racemase family protein	NA	NA	NA	NA	NA
WP_019247224.1|54362_54953_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.6	3.2e-20
WP_003817737.1|54977_55667_-	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_023852650.1|55663_56425_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010929594.1|56504_57404_-	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_005012808.1|57497_58448_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929595.1|59248_60475_-	type II toxin-antitoxin system HipA family toxin	NA	NA	NA	NA	NA
WP_047122776.1|60474_60888_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010929597.1|61077_62019_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019248755.1|62442_63417_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929599.1|63473_64055_-	DJ-1/PfpI family protein	NA	NA	NA	NA	NA
WP_010929600.1|64067_64370_-	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA	NA
WP_029443770.1|64488_65547_-	2Fe-2S iron-sulfur cluster binding domain-containing protein	NA	NA	NA	NA	NA
WP_019247832.1|65581_66853_-	TRAP transporter large permease	NA	NA	NA	NA	NA
WP_010929603.1|67482_68664_-	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929584.1|69085_70036_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 2
NZ_CP010847	Bordetella pertussis strain H622 chromosome, complete genome	4107431	77634	136108	4107431	tRNA,transposase	Planktothrix_phage(22.22%)	54	NA	NA
WP_005012067.1|77634_78585_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_041166334.1|78659_79604_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929608.1|79600_81475_-	O-antigen biosynthesis protein WlbL	NA	A0A2P1ELS8	Moumouvirus	26.9	2.0e-23
WP_003807102.1|82822_83527_-	O-antigen biosynthesis protein WlbI	NA	NA	NA	NA	NA
WP_010929609.1|83523_84696_-	O-antigen biosynthesis protein WlbH	NA	NA	NA	NA	NA
WP_010929610.1|84891_85485_-	O-antigen biosynthesis protein WlbG	NA	NA	NA	NA	NA
WP_010929611.1|85481_86714_-	O-antigen biosynthesis protein WlbF	NA	NA	NA	NA	NA
WP_010929612.1|86731_87991_-	O-antigen biosynthesis protein WlbE	NA	NA	NA	NA	NA
WP_010929613.1|88014_89103_-	O-antigen biosynthesis protein WlbD	NA	A0A0N9R0B2	Chrysochromulina_ericina_virus	36.3	4.8e-46
WP_010929614.1|89110_90211_-	O-antigen biosynthesis protein WlbC	NA	A0A2K9L0G1	Tupanvirus	29.7	3.3e-31
WP_003807114.1|90214_90790_-	O-antigen biosynthesis protein WlbB	NA	NA	NA	NA	NA
WP_003807115.1|90793_91846_-	O-antigen biosynthesis protein WlbA	NA	NA	NA	NA	NA
WP_010929615.1|91976_92984_+	lipopolysaccharide heptosyltransferase I	NA	NA	NA	NA	NA
WP_010929616.1|92985_94272_+	3-deoxy-D-manno-octulosonic acid transferase	NA	NA	NA	NA	NA
WP_003807124.1|94288_94444_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929617.1|94468_95272_-	type III pantothenate kinase	NA	NA	NA	NA	NA
WP_010929618.1|95268_96135_-	biotin--[acetyl-CoA-carboxylase] ligase	NA	NA	NA	NA	NA
WP_010929619.1|96209_97340_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_003807131.1|97339_98179_+	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	32.4	9.1e-21
WP_010929620.1|99111_99714_+	membrane integrity-associated transporter subunit PqiC	NA	NA	NA	NA	NA
WP_010929621.1|99743_100397_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003807138.1|100529_101786_+	D-alanyl-D-alanine carboxypeptidase	NA	B6DZZ7	Stx2-converting_phage	40.5	6.2e-66
WP_010929622.1|101833_102733_+	D-amino acid aminotransferase	NA	NA	NA	NA	NA
WP_003818417.1|102808_103084_+	YbeD family protein	NA	NA	NA	NA	NA
WP_010929623.1|103091_103754_+	lipoyl(octanoyl) transferase LipB	NA	NA	NA	NA	NA
WP_003807146.1|103815_104817_+	lipoyl synthase	NA	NA	NA	NA	NA
WP_003807148.1|104831_105380_-	dTDP-4-dehydrorhamnose 3,5-epimerase	NA	A0A291LA62	Escherichia_phage	53.4	3.7e-47
WP_010929624.1|105437_106334_-	dTDP-4-dehydrorhamnose reductase	NA	NA	NA	NA	NA
WP_010929625.1|106330_107392_-	dTDP-glucose 4,6-dehydratase	NA	A0A1D7XFE8	Escherichia_phage	44.8	1.6e-78
WP_010929626.1|107427_108378_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929627.1|109277_110471_+	cystathionine beta-lyase	NA	NA	NA	NA	NA
WP_010929628.1|110552_111182_-	thiol:disulfide interchange protein DsbA/DsbL	NA	NA	NA	NA	NA
WP_010927242.1|111243_111927_-	SPOR domain-containing protein	NA	NA	NA	NA	NA
WP_023853376.1|111936_113619_-|tRNA	arginine--tRNA ligase	tRNA	NA	NA	NA	NA
WP_003815933.1|113906_114254_+	DUF1840 domain-containing protein	NA	NA	NA	NA	NA
WP_003815930.1|114344_114662_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931363.1|114944_115961_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003815929.1|116036_116837_-	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
WP_003815927.1|116833_117709_-	sugar ABC transporter permease	NA	NA	NA	NA	NA
WP_010929633.1|117719_119012_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929634.1|119054_120095_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.7	6.0e-22
WP_010929635.1|120200_121022_-	phosphodiesterase	NA	NA	NA	NA	NA
WP_005012067.1|121122_122073_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014905488.1|122171_123077_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	31.7	9.8e-21
WP_003815918.1|123073_123907_-	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_010929637.1|124743_125754_-	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_019247800.1|125750_126140_-	substrate-binding domain-containing protein	NA	NA	NA	NA	NA
WP_010929638.1|127033_128287_+	amidase	NA	NA	NA	NA	NA
WP_010929639.1|128377_130078_-	2-isopropylmalate synthase	NA	NA	NA	NA	NA
WP_010929640.1|130504_131152_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023853393.1|131150_132590_+	RNA polymerase factor sigma-54	NA	NA	NA	NA	NA
WP_003815905.1|132682_132985_+	bacterioferritin-associated ferredoxin	NA	NA	NA	NA	NA
WP_010929512.1|133012_133891_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|135157_136108_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 3
NZ_CP010847	Bordetella pertussis strain H622 chromosome, complete genome	4107431	164894	225405	4107431	tRNA,transposase,protease	Diachasmimorpha_longicaudata_entomopoxvirus(11.11%)	51	NA	NA
WP_005015810.1|164894_165845_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929659.1|167288_168191_-	YgcG family protein	NA	NA	NA	NA	NA
WP_003815889.1|168168_168798_-	LemA family protein	NA	NA	NA	NA	NA
WP_010929660.1|169080_170511_+	DEAD/DEAH box helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	29.8	5.8e-44
WP_010929661.1|170544_171174_+	LysE family transporter	NA	NA	NA	NA	NA
WP_003815895.1|171222_172830_+	peptide chain release factor 3	NA	A0A2K9L6L3	Tupanvirus	37.8	9.3e-14
WP_010929663.1|172854_173538_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815898.1|173619_174096_-	bacterioferritin	NA	NA	NA	NA	NA
WP_010929591.1|174302_175253_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929664.1|176368_176896_+	META domain-containing protein	NA	NA	NA	NA	NA
WP_010929665.1|176987_177803_+	META and DUF4377 domain-containing protein	NA	NA	NA	NA	NA
WP_003808370.1|177863_178598_+	sulfurtransferase	NA	NA	NA	NA	NA
WP_010929666.1|178635_180714_-|tRNA	methionine--tRNA ligase	tRNA	A0A1V0SHR2	Klosneuvirus	23.6	1.5e-27
WP_003808374.1|180963_181236_-	hypothetical protein	NA	NA	NA	NA	NA
WP_033446322.1|181337_182423_+	iron-sulfur cluster carrier protein ApbC	NA	NA	NA	NA	NA
WP_010929668.1|182426_184331_+	BamA/TamA family outer membrane protein	NA	NA	NA	NA	NA
WP_014486044.1|184327_188002_+	translocation/assembly module TamB domain-containing protein	NA	NA	NA	NA	NA
WP_010929670.1|188062_188626_+	dCTP deaminase	NA	S5VM63	Pseudomonas_phage	75.3	2.6e-72
WP_003808385.1|188633_189056_-	VOC family protein	NA	NA	NA	NA	NA
WP_010929671.1|189083_189503_-	VOC family protein	NA	NA	NA	NA	NA
WP_076879599.1|189531_190005_-	GNAT family N-acetyltransferase	NA	Q9AZG4	Lactococcus_phage	31.1	2.2e-11
WP_003808391.1|190104_190602_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003808393.1|190756_193027_+	arginine/lysine/ornithine decarboxylase	NA	NA	NA	NA	NA
WP_010929672.1|193075_194308_+	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010929591.1|194406_195357_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929673.1|195459_196095_+	superoxide dismutase	NA	Q56AR7	Bacillus_thuringiensis_phage	73.8	2.8e-83
WP_019248671.1|196091_196985_+	ZIP family metal transporter	NA	NA	NA	NA	NA
WP_010929675.1|197379_198480_+	glycine cleavage system aminomethyltransferase GcvT	NA	NA	NA	NA	NA
WP_010929676.1|198561_198936_+	glycine cleavage system protein GcvH	NA	NA	NA	NA	NA
WP_010929677.1|198995_201860_+	aminomethyl-transferring glycine dehydrogenase	NA	E3SN07	Prochlorococcus_phage	51.4	1.2e-261
WP_010929678.1|202004_202745_-	FadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929679.1|202814_204026_+	CoA transferase	NA	NA	NA	NA	NA
WP_010929680.1|204054_205023_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931070.1|205636_206587_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929699.1|206743_207067_+	phosphate starvation-inducible protein	NA	NA	NA	NA	NA
WP_023853200.1|207171_208212_-	cyclase family protein	NA	NA	NA	NA	NA
WP_010929697.1|208217_208997_-	3-oxoadipate enol-lactonase	NA	NA	NA	NA	NA
WP_003807672.1|209042_209339_-	YciI family protein	NA	NA	NA	NA	NA
WP_003807674.1|209364_209640_-	muconolactone Delta-isomerase	NA	NA	NA	NA	NA
WP_003819086.1|209696_210341_-	CoA transferase subunit B	NA	NA	NA	NA	NA
WP_010929696.1|210340_211027_-	3-oxoacid CoA-transferase subunit A	NA	NA	NA	NA	NA
WP_010929695.1|211156_212008_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929694.1|212058_212784_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010929693.1|212815_214165_-	short-chain fatty acid transporter	NA	NA	NA	NA	NA
WP_010929692.1|214276_215209_-	3-hydroxyacyl-CoA dehydrogenase family protein	NA	NA	NA	NA	NA
WP_033455792.1|215666_218462_-|protease	serine protease autotransporter SphB1	protease	NA	NA	NA	NA
WP_010929690.1|219055_221998_-	phosphoenolpyruvate carboxylase	NA	NA	NA	NA	NA
WP_010929689.1|222069_222789_+	7-cyano-7-deazaguanine synthase QueC	NA	A0A0A0RPC6	Escherichia_phage	43.9	8.0e-50
WP_010929688.1|222827_223376_-	N-acetyltransferase	NA	A0A2H4J136	uncultured_Caudovirales_phage	41.7	1.2e-21
WP_010929687.1|223530_224430_+	virginiamycin B lyase	NA	NA	NA	NA	NA
WP_005012808.1|224454_225405_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 4
NZ_CP010847	Bordetella pertussis strain H622 chromosome, complete genome	4107431	233337	286925	4107431	tRNA,transposase,protease	Bacillus_phage(25.0%)	48	NA	NA
WP_005012067.1|233337_234288_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010927663.1|234374_235325_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930742.1|235321_236272_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929700.1|236370_237168_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_003814363.1|238117_238528_+	carboxymuconolactone decarboxylase family protein	NA	NA	NA	NA	NA
WP_003814358.1|239549_240293_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814356.1|240336_241380_-	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003814355.1|241550_243653_+	TRAP transporter large permease subunit	NA	NA	NA	NA	NA
WP_003814351.1|245063_246020_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929701.1|246038_246530_-	2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase	NA	NA	NA	NA	NA
WP_010929702.1|246526_247882_-	polynucleotide adenylyltransferase PcnB	NA	A0A1B1IVF3	uncultured_Mediterranean_phage	36.8	3.4e-25
WP_010929703.1|247882_248581_-	HAD-IB family hydrolase	NA	NA	NA	NA	NA
WP_010929704.1|248577_249279_-	DnaA regulatory inactivator Hda	NA	NA	NA	NA	NA
WP_003814339.1|249531_250581_+	phosphoribosylformylglycinamidine cyclo-ligase	NA	Q58MH8	Prochlorococcus_phage	43.6	5.6e-68
WP_003814337.1|250686_251628_-|tRNA	tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA	tRNA	NA	NA	NA	NA
WP_010929705.1|251624_253514_-	DNA mismatch repair endonuclease MutL	NA	A0A1B2LRQ5	Wolbachia_phage	32.8	3.3e-79
WP_003814332.1|253600_254239_+	VTT domain-containing protein	NA	NA	NA	NA	NA
WP_019247543.1|254381_255767_-	N-acetylmuramoyl-L-alanine amidase	NA	A0A2H4JCM7	uncultured_Caudovirales_phage	30.3	4.5e-17
WP_010929706.1|255697_256234_-|tRNA	bifunctional alanine racemase/tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE	tRNA	NA	NA	NA	NA
WP_010929707.1|256385_257777_+	class II fumarate hydratase	NA	NA	NA	NA	NA
WP_010929708.1|257793_258774_-	AEC family transporter	NA	NA	NA	NA	NA
WP_003814324.1|258909_259893_+	tripartite tricarboxylate transporter substrate binding protein BugE	NA	NA	NA	NA	NA
WP_010929709.1|259957_260857_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814321.1|260963_262718_+	gamma-glutamyltransferase	NA	NA	NA	NA	NA
WP_010929710.1|262725_263850_-	CoA transferase	NA	NA	NA	NA	NA
WP_010929711.1|263863_264844_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_005012067.1|265574_266525_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929712.1|267084_267630_+	GbsR/MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929713.1|267713_269333_+	cytochrome d ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
WP_004567834.1|269348_270503_+	cytochrome d ubiquinol oxidase subunit II	NA	NA	NA	NA	NA
WP_003817696.1|270516_270642_+	cytochrome bd-I oxidase subunit CydX	NA	NA	NA	NA	NA
WP_010929714.1|270638_272390_+	thiol reductant ABC exporter subunit CydD	NA	W8CYL7	Bacillus_phage	23.8	3.4e-09
WP_010929715.1|272386_274066_+	thiol reductant ABC exporter subunit CydC	NA	W8CYL7	Bacillus_phage	27.6	3.6e-16
WP_010929716.1|274128_274677_+	adenine phosphoribosyltransferase	NA	A0A1V0SKE5	Klosneuvirus	43.1	1.3e-28
WP_010929717.1|275819_276098_+	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|277141_278092_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_173651708.1|278109_278256_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929718.1|278369_278531_+	DUF4224 domain-containing protein	NA	NA	NA	NA	NA
WP_010929719.1|278538_278679_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815821.1|279197_279647_-|protease	ClpXP protease specificity-enhancing factor	protease	NA	NA	NA	NA
WP_003815819.1|279656_280268_-	glutathione S-transferase N-terminal domain-containing protein	NA	NA	NA	NA	NA
WP_019247426.1|280426_281281_-	cytochrome c1	NA	NA	NA	NA	NA
WP_003815816.1|281300_282683_-	cytochrome bc complex cytochrome b subunit	NA	NA	NA	NA	NA
WP_003815815.1|282747_283389_-	ubiquinol-cytochrome c reductase iron-sulfur subunit	NA	NA	NA	NA	NA
WP_010929721.1|283528_283987_+	large conductance mechanosensitive channel protein MscL	NA	NA	NA	NA	NA
WP_010927226.1|284011_284788_-	Nif3-like dinuclear metal center hexameric protein	NA	NA	NA	NA	NA
WP_014906092.1|284841_285978_+	trypsin-like peptidase domain-containing protein	NA	W5SAB9	Pithovirus	31.2	1.2e-07
WP_005015810.1|285974_286925_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 5
NZ_CP010847	Bordetella pertussis strain H622 chromosome, complete genome	4107431	390858	448367	4107431	transposase	Orpheovirus(14.29%)	50	NA	NA
WP_005012067.1|390858_391809_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010927231.1|391945_392863_+	reductase	NA	NA	NA	NA	NA
WP_003815842.1|392859_393108_+	glutaredoxin family protein	NA	NA	NA	NA	NA
WP_003815840.1|393104_394310_+	CoA transferase	NA	NA	NA	NA	NA
WP_014486045.1|394382_395378_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_014486046.1|395400_396621_-	CoA transferase	NA	NA	NA	NA	NA
WP_014486047.1|396617_397262_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019248476.1|398992_399802_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_014486048.1|400106_401060_+	thioredoxin-disulfide reductase	NA	A0A2I2L5E1	Orpheovirus	42.5	5.6e-59
WP_014486049.1|401158_402142_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014486050.1|402068_402770_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_014486051.1|402818_403589_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_019247259.1|403585_404764_-	CoA transferase	NA	NA	NA	NA	NA
WP_014486052.1|404931_406638_-	thiamine pyrophosphate-requiring protein	NA	NA	NA	NA	NA
WP_014486053.1|406634_407531_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_014486054.1|407571_409161_-	rhodanese homology domain-containing protein	NA	NA	NA	NA	NA
WP_003807867.1|409210_410203_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003807865.1|410271_410871_-	hypothetical protein	NA	NA	NA	NA	NA
WP_014486055.1|411331_412312_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929577.1|412387_413338_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_047122777.1|413426_414341_+	DMT family transporter	NA	NA	NA	NA	NA
WP_010929782.1|414337_414997_+	LysE family translocator	NA	NA	NA	NA	NA
WP_003814709.1|415086_416010_+	alpha/beta fold hydrolase	NA	A0A1C9C5K3	Heterosigma_akashiwo_virus	27.2	4.8e-07
WP_010929783.1|416015_416471_-	multidrug/biocide efflux PACE transporter	NA	NA	NA	NA	NA
WP_010929784.1|416467_417571_-	ChbG/HpnK family deacetylase	NA	NA	NA	NA	NA
WP_157734656.1|417529_417799_+	GtrA family protein	NA	NA	NA	NA	NA
WP_010927086.1|417758_419378_-	glycosyltransferase family 39 protein	NA	NA	NA	NA	NA
WP_003814720.1|419374_420433_-	glycosyltransferase family 2 protein	NA	I1TED8	Salmonella_phage	40.5	2.8e-59
WP_033446199.1|420562_421057_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_022997984.1|421149_422127_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929785.1|422322_423528_+	sodium/glutamate symporter	NA	NA	NA	NA	NA
WP_010929786.1|423524_425036_+	TAXI family TRAP transporter solute-binding subunit	NA	NA	NA	NA	NA
WP_003814726.1|425051_426365_-	short-chain fatty acid transporter	NA	NA	NA	NA	NA
WP_003814728.1|426555_426735_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003814730.1|427144_427879_-	DNA polymerase III subunit epsilon	NA	A0A1X9SH08	Bradyrhizobium_phage	43.8	1.4e-41
WP_010929577.1|430323_431274_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247421.1|431405_431804_-	GTP-binding protein	NA	E4ZFJ7	Streptococcus_phage	44.3	9.0e-19
WP_003814701.1|432214_432685_-	universal stress protein	NA	NA	NA	NA	NA
WP_003820700.1|432773_433118_-	TIGR01244 family phosphatase	NA	NA	NA	NA	NA
WP_010929788.1|433217_434618_-	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
WP_010929789.1|436406_436925_-	MgtC/SapB family protein	NA	G3MA03	Bacillus_virus	38.9	2.1e-12
WP_003814694.1|437035_437791_+	TerC family protein	NA	A0A0R6PEZ3	Moraxella_phage	40.8	2.9e-42
WP_003814691.1|437986_439219_+	CoA transferase	NA	NA	NA	NA	NA
WP_010929791.1|439211_439997_+	crotonase/enoyl-CoA hydratase family protein	NA	NA	NA	NA	NA
WP_003814685.1|440063_441035_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003814681.1|441045_442023_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247419.1|442148_443321_+	acyl-CoA dehydrogenase family protein	NA	NA	NA	NA	NA
WP_010929793.1|443347_444376_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_003814674.1|444441_445635_+	acetyl-CoA C-acyltransferase	NA	NA	NA	NA	NA
WP_005012067.1|447416_448367_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 6
NZ_CP010847	Bordetella pertussis strain H622 chromosome, complete genome	4107431	590421	704176	4107431	transposase,terminase,tail,protease,tRNA	uncultured_Caudovirales_phage(14.81%)	113	NA	NA
WP_005013747.1|590421_591372_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023998122.1|591868_592738_+	phosphonate ABC transporter, permease protein PhnE	NA	NA	NA	NA	NA
WP_010931496.1|592734_593556_+	phosphonate ABC transporter, permease protein PhnE	NA	NA	NA	NA	NA
WP_019247235.1|593755_594247_+	CYTH domain-containing protein	NA	NA	NA	NA	NA
WP_019247236.1|594265_595339_+	CHAD domain-containing protein	NA	NA	NA	NA	NA
WP_023853086.1|595385_596489_-	signal recognition particle-docking protein FtsY	NA	NA	NA	NA	NA
WP_003808577.1|596564_597185_+	16S rRNA (guanine(966)-N(2))-methyltransferase RsmD	NA	NA	NA	NA	NA
WP_003808574.1|597205_597715_+	pantetheine-phosphate adenylyltransferase	NA	A0A1B1IVQ3	uncultured_Mediterranean_phage	42.1	1.2e-28
WP_003808570.1|597769_598021_+	YfhL family 4Fe-4S dicluster ferredoxin	NA	A0A1B1IWY9	uncultured_Mediterranean_phage	53.4	1.6e-18
WP_010931494.1|598084_599218_+	benzoate/H(+) symporter BenE family transporter	NA	NA	NA	NA	NA
WP_003808567.1|599225_599612_-	MOSC N-terminal beta barrel domain-containing protein	NA	NA	NA	NA	NA
WP_010931493.1|599608_602128_-	AsmA family protein	NA	NA	NA	NA	NA
WP_003808563.1|602556_602895_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003808562.1|602891_603398_+	SRPBCC family protein	NA	NA	NA	NA	NA
WP_010931492.1|603459_604260_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931491.1|604370_605312_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931490.1|605405_606941_-	M81 family metallopeptidase	NA	NA	NA	NA	NA
WP_010931489.1|608620_610471_-	dipeptide ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	29.2	1.6e-17
WP_003808549.1|610474_611308_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931488.1|611307_612249_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931487.1|612500_613472_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931486.1|613613_615902_+	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
WP_003808542.1|616208_617117_+	TauD/TfdA family dioxygenase	NA	NA	NA	NA	NA
WP_010931485.1|617171_618137_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931484.1|618211_619873_+	thiamine pyrophosphate-binding protein	NA	NA	NA	NA	NA
WP_010931483.1|619944_620655_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_154698388.1|620621_620786_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|620803_621754_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814152.1|622452_622836_+	membrane protein	NA	NA	NA	NA	NA
WP_010927005.1|622893_623496_+	DUF2946 family protein	NA	NA	NA	NA	NA
WP_005013747.1|623492_624443_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003820995.1|624562_624964_-	DoxX family protein	NA	NA	NA	NA	NA
WP_003814158.1|625097_625991_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931481.1|625987_626569_+	NUDIX hydrolase	NA	NA	NA	NA	NA
WP_003814165.1|627363_628098_+	arginyltransferase	NA	NA	NA	NA	NA
WP_010931480.1|628138_629188_+	quinone-dependent dihydroorotate dehydrogenase	NA	NA	NA	NA	NA
WP_003814172.1|629335_629914_-	TIGR01841 family phasin	NA	NA	NA	NA	NA
WP_010931479.1|630300_631278_+	tripartite tricarboxylate transporter substrate binding protein BugD	NA	NA	NA	NA	NA
WP_010931478.1|631371_635766_-	dermonecrotic toxin	NA	NA	NA	NA	NA
WP_003814178.1|635966_636815_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931477.1|636973_637786_-	competence/damage-inducible protein A	NA	NA	NA	NA	NA
WP_005015810.1|637841_638792_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931453.1|638890_639691_-	EI24 domain-containing protein	NA	NA	NA	NA	NA
WP_003814185.1|639752_640136_+	thioredoxin family protein	NA	NA	NA	NA	NA
WP_010931454.1|640147_641581_-	DEAD/DEAH box helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	34.4	1.5e-52
WP_003814188.1|641787_642117_-	AzlD domain-containing protein	NA	NA	NA	NA	NA
WP_010931455.1|642119_642869_-	AzlC family ABC transporter permease	NA	NA	NA	NA	NA
WP_010931456.1|643051_643972_+	branched-chain amino acid transaminase	NA	NA	NA	NA	NA
WP_003814195.1|644018_644231_+	zinc-finger domain-containing protein	NA	NA	NA	NA	NA
WP_010931457.1|644253_644676_+	nuclear transport factor 2 family protein	NA	NA	NA	NA	NA
WP_010931458.1|644692_645793_+	alpha/beta fold hydrolase	NA	NA	NA	NA	NA
WP_010931459.1|645889_647407_-|protease	M48 family metalloprotease	protease	NA	NA	NA	NA
WP_003814203.1|647482_648322_+	UTP--glucose-1-phosphate uridylyltransferase GalU	NA	A0A127AW70	Bacillus_phage	48.9	1.1e-66
WP_003814205.1|648343_649225_-	cytochrome c oxidase assembly protein	NA	NA	NA	NA	NA
WP_003814206.1|649306_650401_-	porin	NA	NA	NA	NA	NA
WP_076879617.1|650694_651645_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_041166340.1|651719_652661_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814209.1|652744_653104_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931461.1|653485_654523_-	sodium:calcium antiporter	NA	NA	NA	NA	NA
WP_010931462.1|654839_656180_+	aminopeptidase P N-terminal domain-containing protein	NA	NA	NA	NA	NA
WP_010931463.1|656189_656642_-	membrane protein	NA	NA	NA	NA	NA
WP_003814217.1|656738_657920_+	UbiH/UbiF/VisC/COQ6 family ubiquinone biosynthesis hydroxylase	NA	NA	NA	NA	NA
WP_023995141.1|657985_659011_+|tRNA	tRNA dihydrouridine synthase DusB	tRNA	NA	NA	NA	NA
WP_003814221.1|659051_659291_+	DNA-binding protein	NA	NA	NA	NA	NA
WP_010931464.1|659360_660950_+	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase	NA	Q58MG4	Prochlorococcus_phage	47.2	8.7e-65
WP_010931465.1|660949_661498_+	crossover junction endodeoxyribonuclease RuvC	NA	NA	NA	NA	NA
WP_003814226.1|661578_662151_+	Holliday junction branch migration protein RuvA	NA	NA	NA	NA	NA
WP_010927008.1|662169_663081_-	complex I NDUFA9 subunit family protein	NA	NA	NA	NA	NA
WP_003814230.1|663154_664123_-	threo-3-hydroxy-L-aspartate ammonia-lyase	NA	NA	NA	NA	NA
WP_010931466.1|664245_665319_+	Holliday junction branch migration DNA helicase RuvB	NA	A0A127AWE7	Bacillus_phage	25.7	2.3e-08
WP_010931467.1|665323_667144_-	DNA helicase RecQ	NA	L7RCS0	Acanthamoeba_polyphaga_moumouvirus	35.3	3.1e-74
WP_010930800.1|667220_668171_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_033446132.1|668259_668595_+	ASCH domain-containing protein	NA	NA	NA	NA	NA
WP_003819076.1|668728_669379_+	carbonic anhydrase	NA	NA	NA	NA	NA
WP_010931468.1|669400_670819_-	amidase	NA	NA	NA	NA	NA
WP_019248554.1|670888_671644_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019247734.1|671612_672371_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010931471.1|672381_673263_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010931472.1|673279_673987_+	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	25.4	8.2e-07
WP_010931473.1|673989_674748_+	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	24.4	4.4e-14
WP_010931474.1|674957_676700_+	nitrite/sulfite reductase	NA	NA	NA	NA	NA
WP_010925795.1|676692_677217_+	DUF934 domain-containing protein	NA	NA	NA	NA	NA
WP_010931475.1|677256_678051_-	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019248926.1|678218_679292_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|679390_680341_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247378.1|680592_680799_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931451.1|680870_681482_-	S24 family peptidase	NA	NA	NA	NA	NA
WP_023853179.1|682036_682288_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_161633094.1|682280_682970_+	hypothetical protein	NA	NA	NA	NA	NA
WP_023853183.1|682987_683209_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|683226_684177_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247942.1|684816_685302_+|transposase	transposase	transposase	C7U0W1	Enterobacteria_phage	61.5	7.3e-39
WP_010931447.1|685288_686566_+|terminase	terminase large subunit	terminase	A0A1B1P9C9	Acinetobacter_phage	64.7	2.4e-150
WP_010931446.1|686568_687987_+	DUF4055 domain-containing protein	NA	R9TF43	Synechococcus_phage	42.1	2.2e-99
WP_010931445.1|688015_689071_+	hypothetical protein	NA	A0A0H5BBX3	Pseudomonas_phage	50.6	2.6e-97
WP_010931444.1|689076_689319_+	hypothetical protein	NA	A0A0H5AUE5	Pseudomonas_phage	53.2	5.6e-16
WP_010931443.1|689441_690044_+	hypothetical protein	NA	R9TF81	Synechococcus_phage	43.6	7.9e-27
WP_005012808.1|690472_691423_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931442.1|692097_692349_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247789.1|692411_692894_+	hypothetical protein	NA	A0A2H4JE38	uncultured_Caudovirales_phage	37.1	1.8e-13
WP_010931440.1|692895_693096_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931439.1|693095_693491_+	hypothetical protein	NA	A0A2D2W284	Stenotrophomonas_phage	35.0	7.8e-07
WP_010931438.1|693487_693886_+	hypothetical protein	NA	I6PCW1	Cronobacter_phage	38.0	4.2e-16
WP_010931437.1|693882_694305_+	DUF4128 domain-containing protein	NA	NA	NA	NA	NA
WP_010931436.1|694312_694813_+	HNH endonuclease	NA	A0A1I9SEX5	Klebsiella_phage	45.1	4.4e-31
WP_010931435.1|695067_695586_+|tail	phage tail protein	tail	A0A1S5R1H0	Pseudomonas_phage	38.3	5.4e-24
WP_003813412.1|695595_695925_+|tail	phage tail assembly chaperone	tail	A0A2H4J121	uncultured_Caudovirales_phage	44.0	2.9e-15
WP_010931434.1|695942_696233_+	DUF1799 domain-containing protein	NA	A0A2H4JBP7	uncultured_Caudovirales_phage	45.2	3.7e-14
WP_010931433.1|696258_698871_+|tail	phage tail tape measure protein	tail	A0A2H4J107	uncultured_Caudovirales_phage	38.6	4.9e-105
WP_010931432.1|698880_699240_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931431.1|699307_699841_+	DUF1833 family protein	NA	A5A3Q9	Burkholderia_phage	46.9	1.1e-40
WP_010931430.1|699837_700227_+	C40 family peptidase	NA	A0A0G3EYJ9	Achromobacter_phage	50.0	3.0e-35
WP_010931429.1|700219_704176_+	DUF1983 domain-containing protein	NA	A0A0B5A1N2	Achromobacter_phage	40.8	3.9e-215
>prophage 7
NZ_CP010847	Bordetella pertussis strain H622 chromosome, complete genome	4107431	710342	764272	4107431	tRNA,transposase	Planktothrix_phage(50.0%)	46	NA	NA
WP_003814636.1|710342_712073_+|tRNA	proline--tRNA ligase	tRNA	A0A2K9L3R9	Tupanvirus	29.4	4.6e-11
WP_010931419.1|712125_712554_+	tol-pal system-associated acyl-CoA thioesterase	NA	NA	NA	NA	NA
WP_003814641.1|712556_713237_+	protein TolQ	NA	NA	NA	NA	NA
WP_003814643.1|713236_713695_+	protein TolR	NA	NA	NA	NA	NA
WP_010931418.1|713731_714706_+	cell envelope integrity protein TolA	NA	NA	NA	NA	NA
WP_010931417.1|714722_716039_+	Tol-Pal system protein TolB	NA	NA	NA	NA	NA
WP_003814650.1|716070_716568_+	peptidoglycan-associated lipoprotein Pal	NA	NA	NA	NA	NA
WP_003814652.1|716654_717344_+	tol-pal system protein YbgF	NA	NA	NA	NA	NA
WP_010931416.1|717343_718393_+	iron ABC transporter permease	NA	NA	NA	NA	NA
WP_003814657.1|718389_719184_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.6	2.4e-15
WP_019247923.1|719352_719703_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247922.1|719678_720236_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_005012808.1|721365_722316_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929184.1|724453_725683_+	spore maturation protein	NA	NA	NA	NA	NA
WP_003814419.1|725685_727128_-	pyruvate kinase	NA	NA	NA	NA	NA
WP_010931414.1|727232_728378_+	glycerate kinase	NA	W6LM47	Streptococcus_phage	42.2	1.7e-41
WP_010931413.1|728409_729207_-	16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA	NA	NA	NA	NA	NA
WP_010931412.1|729231_730791_-	chaperone SurA	NA	NA	NA	NA	NA
WP_010931411.1|730787_733160_-	LPS-assembly protein LptD	NA	NA	NA	NA	NA
WP_010931410.1|733269_734373_+	phosphotransferase	NA	NA	NA	NA	NA
WP_010931409.1|734372_735065_+	nucleotidyltransferase family protein	NA	NA	NA	NA	NA
WP_003814436.1|735208_735910_+	membrane protein	NA	NA	NA	NA	NA
WP_003814437.1|735894_736272_-	4a-hydroxytetrahydrobiopterin dehydratase	NA	NA	NA	NA	NA
WP_005012067.1|737003_737954_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814441.1|738113_738986_-	oxaloacetate decarboxylase	NA	NA	NA	NA	NA
WP_003814443.1|739326_739545_+	DUF1059 domain-containing protein	NA	NA	NA	NA	NA
WP_019247242.1|739584_740964_-	aminotransferase class III-fold pyridoxal phosphate-dependent enzyme	NA	NA	NA	NA	NA
WP_010929976.1|741005_742403_-	amidase family protein	NA	NA	NA	NA	NA
WP_010927038.1|742442_744095_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.8	6.0e-16
WP_010929977.1|744098_744983_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010929978.1|744982_745924_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010929979.1|746002_747622_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929980.1|747788_748604_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814459.1|748671_749241_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005013747.1|749241_750192_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814461.1|750846_751944_+	carboxynorspermidine decarboxylase	NA	NA	NA	NA	NA
WP_003814462.1|751977_753243_+	saccharopine dehydrogenase family protein	NA	NA	NA	NA	NA
WP_010929591.1|753400_754351_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929982.1|754594_755185_+	polyisoprenoid-binding protein	NA	NA	NA	NA	NA
WP_010929983.1|755200_757645_-	TonB-dependent siderophore receptor	NA	NA	NA	NA	NA
WP_003814467.1|757764_758736_-	FecR family protein	NA	NA	NA	NA	NA
WP_023852739.1|758867_759392_+	sigma-70 family RNA polymerase sigma factor	NA	NA	NA	NA	NA
WP_005012067.1|759351_760302_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929984.1|760523_762719_-	DUF1156 domain-containing protein	NA	NA	NA	NA	NA
WP_010929985.1|762791_763220_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_005012808.1|763321_764272_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 8
NZ_CP010847	Bordetella pertussis strain H622 chromosome, complete genome	4107431	855150	904414	4107431	transposase,holin	Vibrio_phage(33.33%)	40	NA	NA
WP_010929591.1|855150_856101_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247352.1|856118_856673_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003813949.1|856674_857109_+	PaaI family thioesterase	NA	NA	NA	NA	NA
WP_003813951.1|857105_857540_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003813952.1|857523_858327_-	phosphatase PAP2 family protein	NA	NA	NA	NA	NA
WP_003813954.1|858343_859159_-	metallophosphoesterase	NA	NA	NA	NA	NA
WP_019248500.1|859155_859971_-	diacylglycerol kinase	NA	NA	NA	NA	NA
WP_010930033.1|860117_860819_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003813960.1|860846_862805_-|holin	choline BCCT transporter BetT	holin	A0A2I7QNT1	Vibrio_phage	30.3	8.0e-28
WP_005013747.1|862887_863838_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930032.1|864058_864727_+	transcriptional regulator	NA	NA	NA	NA	NA
WP_010930031.1|864850_865957_+	efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
WP_010930030.1|865969_869083_+	MexW/MexI family multidrug efflux RND transporter permease subunit	NA	S5VTK5	Leptospira_phage	21.5	4.5e-57
WP_010930029.1|869079_870573_+	efflux transporter outer membrane subunit	NA	NA	NA	NA	NA
WP_010926969.1|870587_871259_+	transcriptional regulator	NA	NA	NA	NA	NA
WP_003813974.1|871302_871797_-	azurin	NA	NA	NA	NA	NA
WP_010930027.1|871937_872585_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_023853163.1|872688_874737_+	hydantoinase/oxoprolinase family protein	NA	NA	NA	NA	NA
WP_010930025.1|874733_876746_+	hydantoinase B/oxoprolinase family protein	NA	NA	NA	NA	NA
WP_010930024.1|876771_878106_+	FAD-binding oxidoreductase	NA	NA	NA	NA	NA
WP_003813981.1|878214_879207_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003813982.1|879273_881358_-	rhodanese-like domain-containing protein	NA	NA	NA	NA	NA
WP_010930023.1|881382_882354_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930022.1|882482_883514_-	succinylglutamate desuccinylase/aspartoacylase family protein	NA	NA	NA	NA	NA
WP_010930021.1|883517_884669_-	cystathionine beta-lyase	NA	NA	NA	NA	NA
WP_076879542.1|884839_885763_+	transcriptional regulator LrhA	NA	NA	NA	NA	NA
WP_003813987.1|885840_886665_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_023994644.1|886861_887878_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003813988.1|888074_889058_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930019.1|890656_892045_-	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_003813991.1|892075_893065_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003813992.1|893175_894408_-	methylaspartate ammonia-lyase	NA	NA	NA	NA	NA
WP_003813993.1|894689_895490_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930018.1|895512_897744_-|holin	choline BCCT transporter BetT	holin	NA	NA	NA	NA
WP_010930017.1|898531_898978_-	preprotein translocase subunit SecG	NA	NA	NA	NA	NA
WP_003813996.1|898999_899746_-	triose-phosphate isomerase	NA	NA	NA	NA	NA
WP_003813997.1|899889_900867_-	NAD(P)H-quinone oxidoreductase	NA	NA	NA	NA	NA
WP_010930016.1|901500_902112_+	PIN domain-containing protein	NA	K4HZX4	Acidithiobacillus_phage	32.5	3.3e-12
WP_003813999.1|902105_903323_-	threonine ammonia-lyase	NA	NA	NA	NA	NA
WP_005013747.1|903463_904414_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 9
NZ_CP010847	Bordetella pertussis strain H622 chromosome, complete genome	4107431	914026	978966	4107431	transposase	Bacillus_phage(18.18%)	58	NA	NA
WP_005012067.1|914026_914977_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930051.1|914973_916806_-	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	26.4	1.3e-27
WP_010930052.1|917204_917864_+	thiopurine S-methyltransferase	NA	NA	NA	NA	NA
WP_023852837.1|917957_918104_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003809770.1|918212_918380_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930054.1|918391_919072_-	DUF3313 domain-containing protein	NA	NA	NA	NA	NA
WP_010930055.1|919353_920070_+	flagellar brake protein	NA	NA	NA	NA	NA
WP_010930056.1|920084_921386_-	phospholipase A	NA	NA	NA	NA	NA
WP_029444137.1|923530_926419_+	HD domain-containing protein	NA	NA	NA	NA	NA
WP_010930057.1|926642_927995_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_004568140.1|928023_928545_+	acetyl-CoA carboxylase biotin carboxyl carrier protein	NA	NA	NA	NA	NA
WP_003819989.1|928541_929996_+	carboxylase	NA	NA	NA	NA	NA
WP_023852826.1|930030_930279_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247557.1|930384_931260_+	amidohydrolase	NA	NA	NA	NA	NA
WP_010930060.1|931285_932341_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930061.1|932353_933145_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930062.1|933177_934548_+	acetyl-CoA carboxylase biotin carboxylase subunit	NA	NA	NA	NA	NA
WP_005012067.1|935724_936675_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930064.1|936727_936949_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003810832.1|937108_937321_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003810835.1|937440_938559_+	mannose-6-phosphate isomerase	NA	NA	NA	NA	NA
WP_003810839.1|939064_939316_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930066.1|939428_940379_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003810840.1|940375_940759_-	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA	NA
WP_023852913.1|940813_942628_-	ABC transporter ATP-binding protein/permease	NA	W8CYL7	Bacillus_phage	27.9	5.7e-44
WP_010930068.1|942777_943605_+	aldo/keto reductase	NA	A0A2H4PQR8	Staphylococcus_phage	47.4	1.7e-67
WP_010930069.1|943650_944631_+	aldo/keto reductase	NA	NA	NA	NA	NA
WP_003810850.1|944627_944840_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003810851.1|944836_946018_-	PepSY domain-containing protein	NA	NA	NA	NA	NA
WP_019248496.1|946181_946916_+	metallophosphoesterase	NA	A0A2H4J0P0	uncultured_Caudovirales_phage	49.2	1.9e-62
WP_010930071.1|946917_949530_-	PBP1A family penicillin-binding protein	NA	NA	NA	NA	NA
WP_003810859.1|949665_951579_-	S9 family peptidase	NA	NA	NA	NA	NA
WP_010930072.1|952194_952605_-	PaaI family thioesterase	NA	NA	NA	NA	NA
WP_003810865.1|952702_953788_+	DNA polymerase IV	NA	NA	NA	NA	NA
WP_005012067.1|953886_954837_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930088.1|954833_955808_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003821497.1|955932_956844_+	LysR family transcriptional regulator	NA	Q6JIH3	Burkholderia_virus	27.6	4.4e-05
WP_004566317.1|957120_957513_-	type II toxin-antitoxin system HicB family antitoxin	NA	A0A0R6PJ17	Moraxella_phage	45.0	4.8e-25
WP_005012808.1|957642_958593_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930090.1|958622_958805_-	type II toxin-antitoxin system HicA family toxin	NA	A0A1L2JY37	Aeribacillus_phage	56.1	3.7e-12
WP_010930091.1|959577_960759_-	MFS transporter	NA	NA	NA	NA	NA
WP_010930092.1|960974_961652_-	HAD-IA family hydrolase	NA	NA	NA	NA	NA
WP_010930093.1|961648_962374_-	bifunctional 3-demethylubiquinone 3-O-methyltransferase/2-octaprenyl-6-hydroxy phenol methylase	NA	NA	NA	NA	NA
WP_010930094.1|962499_963081_-	OmpA family protein	NA	NA	NA	NA	NA
WP_010930095.1|963451_966133_+	DNA gyrase subunit A	NA	G3M9Z5	Bacillus_virus	33.5	3.2e-104
WP_010930096.1|966132_967266_+	3-phosphoserine/phosphohydroxythreonine transaminase	NA	M1Q1P2	Streptococcus_phage	44.0	6.4e-78
WP_010930097.1|967258_968344_+	prephenate dehydratase	NA	NA	NA	NA	NA
WP_010930098.1|968430_969330_+	prephenate dehydrogenase/arogenate dehydrogenase family protein	NA	NA	NA	NA	NA
WP_010930099.1|969326_970655_+	3-phosphoshikimate 1-carboxyvinyltransferase	NA	NA	NA	NA	NA
WP_010930100.1|970669_971341_+	(d)CMP kinase	NA	NA	NA	NA	NA
WP_010930101.1|971528_973244_+	30S ribosomal protein S1	NA	NA	NA	NA	NA
WP_010930102.1|973245_973605_+	integration host factor subunit beta	NA	NA	NA	NA	NA
WP_010930103.1|973796_974111_+	DUF1049 domain-containing protein	NA	NA	NA	NA	NA
WP_010930104.1|974153_975374_+	lipopolysaccharide assembly protein LapB	NA	NA	NA	NA	NA
WP_010930105.1|975370_976312_+	D-glycero-beta-D-manno-heptose-7-phosphate kinase	NA	A0A2H4N7X4	Lake_Baikal_phage	28.1	1.5e-16
WP_003821513.1|976308_977298_+	ADP-glyceromanno-heptose 6-epimerase	NA	E3SJ87	Synechococcus_phage	34.4	2.2e-26
WP_033446303.1|977332_977917_+	helix-hairpin-helix domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|978015_978966_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 10
NZ_CP010847	Bordetella pertussis strain H622 chromosome, complete genome	4107431	998366	1061517	4107431	transposase	Enterococcus_phage(16.67%)	54	NA	NA
WP_005012067.1|998366_999317_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930118.1|999421_1000471_+	NADP(H)-dependent aldo-keto reductase	NA	NA	NA	NA	NA
WP_010929632.1|1000608_1001625_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010926548.1|1003133_1003706_-	chorismate lyase	NA	NA	NA	NA	NA
WP_010930119.1|1003765_1004497_+	rRNA pseudouridine synthase	NA	NA	NA	NA	NA
WP_029443805.1|1004548_1005466_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930121.1|1006273_1009453_+	efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_014486063.1|1009449_1010832_+	efflux transporter outer membrane subunit	NA	NA	NA	NA	NA
WP_010930123.1|1010901_1011153_-	GlsB/YeaQ/YmgE family stress response membrane protein	NA	NA	NA	NA	NA
WP_010930124.1|1011298_1011913_-	SCO family protein	NA	NA	NA	NA	NA
WP_019248379.1|1012099_1014214_-	M3 family metallopeptidase	NA	NA	NA	NA	NA
WP_003811948.1|1014289_1015141_-	bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD	NA	A0A249XZQ2	Enterococcus_phage	39.8	2.1e-33
WP_010930126.1|1015137_1015764_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_003817147.1|1015760_1017515_-	PAS domain S-box protein	NA	NA	NA	NA	NA
WP_010930127.1|1017807_1020513_+	pyruvate dehydrogenase (acetyl-transferring), homodimeric type	NA	NA	NA	NA	NA
WP_010930128.1|1020525_1022187_+	dihydrolipoyllysine-residue acetyltransferase	NA	NA	NA	NA	NA
WP_010930129.1|1022199_1023990_+	dihydrolipoyl dehydrogenase	NA	A0A2K5B2C5	Erysipelothrix_phage	25.2	2.4e-39
WP_003817151.1|1024211_1025387_-	FliC/FljB family flagellin	NA	NA	NA	NA	NA
WP_010929584.1|1025429_1026380_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930130.1|1026478_1027219_-	16S rRNA (uracil(1498)-N(3))-methyltransferase	NA	NA	NA	NA	NA
WP_010930131.1|1027413_1029450_+	transketolase	NA	NA	NA	NA	NA
WP_010930132.1|1029467_1030478_+	type I glyceraldehyde-3-phosphate dehydrogenase	NA	NA	NA	NA	NA
WP_010930133.1|1030595_1031789_+	phosphoglycerate kinase	NA	NA	NA	NA	NA
WP_010930134.1|1031818_1032592_-	enoyl-ACP reductase FabI	NA	NA	NA	NA	NA
WP_010930135.1|1032588_1033779_-	acetate kinase	NA	NA	NA	NA	NA
WP_003809454.1|1033804_1034743_-	phosphate acetyltransferase	NA	NA	NA	NA	NA
WP_010930136.1|1034739_1037088_-	DUF3141 domain-containing protein	NA	NA	NA	NA	NA
WP_010930137.1|1037242_1037884_-	glutathione transferase	NA	NA	NA	NA	NA
WP_023853531.1|1037987_1039121_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994624.1|1039213_1039366_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930138.1|1039397_1039946_-	DinB family protein	NA	NA	NA	NA	NA
WP_003819814.1|1039964_1040450_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_010930139.1|1040627_1041566_+	DnaJ domain-containing protein	NA	A0A0P0YMJ9	Yellowstone_lake_phycodnavirus	24.1	5.6e-11
WP_003809467.1|1041568_1041886_+	MerR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247197.1|1041931_1042876_+	AzlC family ABC transporter permease	NA	NA	NA	NA	NA
WP_010930141.1|1044556_1045207_+	molybdopterin adenylyltransferase	NA	NA	NA	NA	NA
WP_003809479.1|1045260_1045596_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930142.1|1045592_1046453_+	M23 family metallopeptidase	NA	A0A292GJG6	Xanthomonas_phage	36.1	2.6e-15
WP_003819817.1|1046469_1046751_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003809486.1|1046824_1047088_-	translation initiation factor IF-1	NA	NA	NA	NA	NA
WP_005012067.1|1047331_1048282_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811933.1|1048580_1049318_-	RNA polymerase sigma factor FliA	NA	NA	NA	NA	NA
WP_010930143.1|1049753_1050077_+	flagellar transcriptional regulator FlhD	NA	NA	NA	NA	NA
WP_003811929.1|1050111_1050672_+	flagellar transcriptional regulator FlhC	NA	NA	NA	NA	NA
WP_003811927.1|1050792_1051668_+	flagellar motor stator protein MotA	NA	NA	NA	NA	NA
WP_003817154.1|1051680_1052628_+	flagellar motor protein MotB	NA	NA	NA	NA	NA
WP_019247393.1|1052729_1053023_+	response regulator	NA	NA	NA	NA	NA
WP_010930144.1|1053049_1055107_+	chemotaxis protein CheA	NA	NA	NA	NA	NA
WP_003811919.1|1055121_1055622_+	chemotaxis protein CheW	NA	NA	NA	NA	NA
WP_010930145.1|1055695_1057402_+	Tar ligand binding domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	41.7	1.4e-12
WP_010930146.1|1058265_1059318_+	chemotaxis response regulator protein-glutamate methylesterase	NA	NA	NA	NA	NA
WP_003811911.1|1059370_1059760_+	chemotaxis response regulator CheY	NA	Q56AR1	Bacillus_thuringiensis_phage	33.3	5.7e-10
WP_003817162.1|1059768_1060401_+	protein phosphatase CheZ	NA	NA	NA	NA	NA
WP_010931363.1|1060500_1061517_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
>prophage 11
NZ_CP010847	Bordetella pertussis strain H622 chromosome, complete genome	4107431	1067501	1126515	4107431	tRNA,transposase,protease,holin	uncultured_Mediterranean_phage(37.5%)	50	NA	NA
WP_015041211.1|1067501_1068929_-|tRNA	tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB	tRNA	NA	NA	NA	NA
WP_010931363.1|1069866_1070883_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003809411.1|1071215_1072151_-	protein translocase subunit SecF	NA	A0A1B1IVP7	uncultured_Mediterranean_phage	35.5	3.0e-41
WP_010930154.1|1072200_1074081_-	protein translocase subunit SecD	NA	NA	NA	NA	NA
WP_003809416.1|1074147_1074492_-	preprotein translocase subunit YajC	NA	A0A1B1IVR5	uncultured_Mediterranean_phage	40.4	1.0e-10
WP_010930155.1|1074636_1075773_-|tRNA	tRNA guanosine(34) transglycosylase Tgt	tRNA	A0A1B1IVQ4	uncultured_Mediterranean_phage	44.4	1.9e-85
WP_023853534.1|1075769_1076843_-|tRNA	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	tRNA	NA	NA	NA	NA
WP_003809423.1|1077000_1078437_+	D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase	NA	NA	NA	NA	NA
WP_010930157.1|1078527_1079169_+	uracil phosphoribosyltransferase	NA	NA	NA	NA	NA
WP_023853536.1|1079504_1080521_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_019248433.1|1080853_1083601_+	pertactin autotransporter	NA	NA	NA	NA	NA
WP_010930160.1|1083667_1085089_-	uroporphyrinogen-III C-methyltransferase	NA	NA	NA	NA	NA
WP_003809431.1|1085352_1086069_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003809432.1|1086153_1086471_+	DUF883 domain-containing protein	NA	NA	NA	NA	NA
WP_003819794.1|1086511_1086925_+|holin	phage holin family protein	holin	NA	NA	NA	NA
WP_010930161.1|1086926_1087286_+	hypothetical protein	NA	NA	NA	NA	NA
WP_023853525.1|1087328_1088873_-	4-hydroxy-3-polyprenylbenzoate decarboxylase	NA	NA	NA	NA	NA
WP_010930163.1|1088956_1089787_+	lytic transglycosylase domain-containing protein	NA	NA	NA	NA	NA
WP_010930164.1|1089821_1090976_-	pyridoxal phosphate-dependent aminotransferase	NA	NA	NA	NA	NA
WP_010930165.1|1091018_1091891_+	hypothetical protein	NA	NA	NA	NA	NA
WP_014486065.1|1092007_1094296_+	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
WP_003809441.1|1095502_1095967_+	barstar family protein	NA	NA	NA	NA	NA
WP_005013747.1|1095993_1096944_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_154698393.1|1096961_1097099_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930167.1|1097311_1098088_-	phosphate ABC transporter ATP-binding protein PstB	NA	G9BWD6	Planktothrix_phage	28.7	4.3e-17
WP_003809638.1|1098132_1098990_-	phosphate ABC transporter permease PstA	NA	NA	NA	NA	NA
WP_010930169.1|1099011_1100028_-	phosphate ABC transporter permease subunit PstC	NA	NA	NA	NA	NA
WP_014486066.1|1100162_1101203_-	phosphate ABC transporter substrate-binding protein PstS	NA	M4QHS4	Cyanophage	40.2	2.1e-51
WP_010930171.1|1101397_1103479_-	polyphosphate kinase 1	NA	NA	NA	NA	NA
WP_010930172.1|1103714_1105208_+	exopolyphosphatase	NA	NA	NA	NA	NA
WP_003809629.1|1105438_1106233_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_003819875.1|1106453_1107812_-	phosphoglucosamine mutase	NA	NA	NA	NA	NA
WP_010930173.1|1107808_1108651_-	dihydropteroate synthase	NA	A0A0B5J4J5	Pandoravirus	32.5	3.2e-26
WP_010930174.1|1108669_1110556_-|protease	ATP-dependent zinc metalloprotease FtsH	protease	M4QMW8	Micromonas_pusilla_virus	41.5	1.4e-109
WP_162096758.1|1110497_1110749_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930175.1|1110793_1111426_-	RlmE family RNA methyltransferase	NA	NA	NA	NA	NA
WP_003809618.1|1111444_1112047_+	YhbY family RNA-binding protein	NA	NA	NA	NA	NA
WP_010929591.1|1112198_1113149_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_161633091.1|1113729_1114437_+	DUF192 domain-containing protein	NA	NA	NA	NA	NA
WP_003812707.1|1114795_1115782_-	homoserine kinase	NA	NA	NA	NA	NA
WP_010930178.1|1115921_1116935_+|tRNA	tRNA dihydrouridine(20/20a) synthase DusA	tRNA	NA	NA	NA	NA
WP_005012067.1|1116931_1117882_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_155120815.1|1117899_1118040_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003812703.1|1117994_1118453_-	CBS domain-containing protein	NA	NA	NA	NA	NA
WP_003812701.1|1118489_1119803_-	YihY family inner membrane protein	NA	NA	NA	NA	NA
WP_010930180.1|1119820_1120192_+	DUF2069 domain-containing protein	NA	NA	NA	NA	NA
WP_019248549.1|1120188_1121652_+	YdiU family protein	NA	A0A075BSJ0	Microcystis_phage	32.5	1.7e-43
WP_010930182.1|1121792_1122521_+	response regulator transcription factor	NA	NA	NA	NA	NA
WP_010930183.1|1122502_1125352_-	EAL domain-containing protein	NA	NA	NA	NA	NA
WP_010929591.1|1125564_1126515_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 12
NZ_CP010847	Bordetella pertussis strain H622 chromosome, complete genome	4107431	1157581	1219752	4107431	tRNA,transposase	Erysipelothrix_phage(33.33%)	50	NA	NA
WP_010930198.1|1157581_1158532_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019248935.1|1158630_1159254_-	serotype 2 fimbrial subunit	NA	NA	NA	NA	NA
WP_010930200.1|1159427_1161710_-	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
WP_010930201.1|1161864_1164561_-	alpha-ketoglutarate dehydrogenase	NA	NA	NA	NA	NA
WP_010930202.1|1164686_1165175_+	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_003813631.1|1167585_1170456_+	2-oxoglutarate dehydrogenase E1 component	NA	NA	NA	NA	NA
WP_010930204.1|1170501_1171716_+	2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase	NA	NA	NA	NA	NA
WP_003813626.1|1171945_1173373_+	dihydrolipoyl dehydrogenase	NA	A0A2K5B2C5	Erysipelothrix_phage	28.1	2.1e-41
WP_023853245.1|1173470_1174562_+	cell division protein ZapE	NA	NA	NA	NA	NA
WP_010930206.1|1174574_1175333_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_003813621.1|1175420_1176323_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|1176319_1177270_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930207.1|1177399_1178383_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003813618.1|1178437_1179160_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930211.1|1180638_1181994_+|tRNA	tryptophan--tRNA ligase	tRNA	NA	NA	NA	NA
WP_010930212.1|1182074_1184450_-	RNA-binding transcriptional accessory protein Tex	NA	NA	NA	NA	NA
WP_010930213.1|1184614_1186690_+	ATP-dependent DNA helicase	NA	A0A127AW80	Bacillus_phage	30.0	2.4e-75
WP_003813594.1|1186751_1187552_-	outer membrane protein assembly factor BamD	NA	NA	NA	NA	NA
WP_010930214.1|1187653_1188616_+	RluA family pseudouridine synthase	NA	NA	NA	NA	NA
WP_019247742.1|1188603_1189359_+	peptidoglycan editing factor PgeF	NA	NA	NA	NA	NA
WP_010930216.1|1189466_1191104_+	class I poly(R)-hydroxyalkanoic acid synthase	NA	NA	NA	NA	NA
WP_003813586.1|1191171_1191909_+	acetoacetyl-CoA reductase	NA	NA	NA	NA	NA
WP_003813585.1|1192011_1192587_+	polyhydroxyalkanoate synthesis repressor PhaR	NA	NA	NA	NA	NA
WP_010930217.1|1192759_1193296_+	iron transporter	NA	NA	NA	NA	NA
WP_003813580.1|1193298_1193643_+	cupredoxin domain-containing protein	NA	NA	NA	NA	NA
WP_010930218.1|1193658_1194504_+	FTR1 family protein	NA	NA	NA	NA	NA
WP_003821443.1|1194542_1195922_+	4Fe-4S binding protein	NA	NA	NA	NA	NA
WP_003813574.1|1195999_1196881_+	PhzF family phenazine biosynthesis protein	NA	NA	NA	NA	NA
WP_010929956.1|1196979_1197930_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811632.1|1197926_1198337_-	VOC family protein	NA	NA	NA	NA	NA
WP_010930219.1|1198444_1199299_-	amidohydrolase family protein	NA	NA	NA	NA	NA
WP_003811636.1|1199291_1200254_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930220.1|1200299_1201424_-	mandelate racemase/muconate lactonizing enzyme family protein	NA	Q6A202	Oenococcus_phage	28.3	1.5e-31
WP_019247966.1|1201529_1202408_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930222.1|1202532_1203312_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930223.1|1203465_1204887_+	MFS transporter	NA	NA	NA	NA	NA
WP_010930224.1|1205321_1207019_+	sodium:solute symporter family protein	NA	NA	NA	NA	NA
WP_010930225.1|1207245_1208187_-	LD-carboxypeptidase	NA	NA	NA	NA	NA
WP_010930226.1|1208513_1209260_+	aldolase	NA	NA	NA	NA	NA
WP_033446252.1|1209267_1210194_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930228.1|1210315_1211233_+	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_003811660.1|1211272_1212226_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003811662.1|1212250_1212829_+	amino acid synthesis family protein	NA	NA	NA	NA	NA
WP_010930229.1|1214502_1215111_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930230.1|1215188_1215542_-	NirD/YgiW/YdeI family stress tolerance protein	NA	NA	NA	NA	NA
WP_010930231.1|1215625_1216615_-	succinylglutamate desuccinylase/aspartoacylase family protein	NA	NA	NA	NA	NA
WP_023852977.1|1216611_1216800_-	hypothetical protein	NA	NA	NA	NA	NA
WP_076879566.1|1216817_1217768_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010927663.1|1217854_1218805_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931070.1|1218801_1219752_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 13
NZ_CP010847	Bordetella pertussis strain H622 chromosome, complete genome	4107431	1270679	1327890	4107431	transposase	Klosneuvirus(16.67%)	49	NA	NA
WP_010931070.1|1270679_1271630_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931041.1|1275376_1275988_-	DUF2239 family protein	NA	NA	NA	NA	NA
WP_003812368.1|1276210_1277671_+	IMP dehydrogenase	NA	A0A1V0SHK8	Klosneuvirus	41.3	1.6e-97
WP_010931040.1|1277767_1279360_+	glutamine-hydrolyzing GMP synthase	NA	A0A1V0SH76	Hokovirus	33.3	1.0e-17
WP_019247974.1|1279713_1279971_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003816876.1|1279972_1281313_+	type II toxin-antitoxin system HipA family toxin	NA	NA	NA	NA	NA
WP_010931038.1|1281408_1282098_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247976.1|1282110_1283541_+	MFS transporter	NA	NA	NA	NA	NA
WP_014905903.1|1285265_1286087_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931036.1|1286097_1287669_+	amidohydrolase	NA	NA	NA	NA	NA
WP_010931035.1|1287697_1288675_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931034.1|1288701_1289505_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	38.2	2.7e-30
WP_010931033.1|1289501_1290296_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_003816890.1|1290303_1291539_+	DUF521 domain-containing protein	NA	NA	NA	NA	NA
WP_010931032.1|1291531_1291966_+	DUF126 domain-containing protein	NA	NA	NA	NA	NA
WP_005013747.1|1292715_1293666_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931031.1|1294287_1296015_-	sulfate permease	NA	NA	NA	NA	NA
WP_010931030.1|1296126_1297485_+	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
WP_023853289.1|1297541_1297760_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|1297777_1298728_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931029.1|1298768_1299839_+	FUSC family protein	NA	NA	NA	NA	NA
WP_010931028.1|1299861_1300740_-	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
WP_010931027.1|1300911_1301883_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010931026.1|1302045_1302888_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931025.1|1303049_1303730_+	cupin domain-containing protein	NA	NA	NA	NA	NA
WP_010931024.1|1303723_1304893_+	FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010931023.1|1304889_1305921_+	alcohol dehydrogenase catalytic domain-containing protein	NA	A0A2K9L339	Tupanvirus	27.8	1.8e-26
WP_010931022.1|1305964_1307206_+	MFS transporter	NA	NA	NA	NA	NA
WP_010931021.1|1307240_1308773_-	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
WP_010931020.1|1308853_1309477_+	FMN-binding negative transcriptional regulator	NA	NA	NA	NA	NA
WP_010931019.1|1309507_1310119_+	LysE family translocator	NA	NA	NA	NA	NA
WP_010931018.1|1310154_1310625_+	DUF1801 domain-containing protein	NA	NA	NA	NA	NA
WP_019248147.1|1311056_1312061_+	M20/M25/M40 family metallo-hydrolase	NA	NA	NA	NA	NA
WP_010931017.1|1312097_1313612_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931016.1|1313615_1314575_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931015.1|1314603_1315407_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931014.1|1315408_1317043_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	31.1	2.9e-15
WP_010931013.1|1317126_1318188_+	LacI family DNA-binding transcriptional regulator	NA	NA	NA	NA	NA
WP_004567322.1|1318386_1318656_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931012.1|1318659_1319184_+	DNA-binding protein	NA	J9Q7G7	Salmonella_phage	32.9	6.5e-09
WP_010929591.1|1319599_1320550_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931011.1|1320546_1321581_-	metal-dependent hydrolase	NA	NA	NA	NA	NA
WP_003816758.1|1321689_1322328_+	DedA family protein	NA	NA	NA	NA	NA
WP_019247724.1|1322622_1322850_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_003820420.1|1322972_1323686_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_005013747.1|1323930_1324881_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931009.1|1324984_1325266_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931008.1|1325380_1326829_-	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
WP_005012808.1|1326939_1327890_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 14
NZ_CP010847	Bordetella pertussis strain H622 chromosome, complete genome	4107431	1418123	1470276	4107431	tRNA,transposase	Salmonella_phage(25.0%)	46	NA	NA
WP_005013747.1|1418123_1419074_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023999730.1|1419091_1419244_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003814065.1|1419240_1419594_+	cytochrome c	NA	NA	NA	NA	NA
WP_003814063.1|1419606_1419969_+	cytochrome c	NA	NA	NA	NA	NA
WP_003814061.1|1420010_1420436_-	DUF1841 family protein	NA	NA	NA	NA	NA
WP_003814059.1|1420638_1421895_+	NADP-dependent isocitrate dehydrogenase	NA	Q77Z09	Phage_21	64.8	1.2e-11
WP_003814057.1|1422093_1423074_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005015028.1|1423223_1424465_+	O-antigen ligase family protein	NA	NA	NA	NA	NA
WP_005013747.1|1424563_1425514_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814052.1|1425522_1426218_-	two-component system response regulator KdpE	NA	NA	NA	NA	NA
WP_003814050.1|1429039_1429639_-	potassium-transporting ATPase subunit KdpC	NA	NA	NA	NA	NA
WP_010930950.1|1429649_1431815_-	potassium-transporting ATPase subunit KdpB	NA	M1HBF8	Paramecium_bursaria_Chlorella_virus	27.1	1.2e-24
WP_010930949.1|1431838_1433623_-	potassium-transporting ATPase subunit KdpA	NA	NA	NA	NA	NA
WP_017685545.1|1433622_1433712_-	K(+)-transporting ATPase subunit F	NA	NA	NA	NA	NA
WP_003814042.1|1434406_1434679_+	DUF4212 domain-containing protein	NA	NA	NA	NA	NA
WP_003814040.1|1434678_1436745_+	cation acetate symporter	NA	NA	NA	NA	NA
WP_010929577.1|1436741_1437692_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|1437790_1438741_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005015014.1|1438856_1439189_-	multidrug transporter	NA	NA	NA	NA	NA
WP_010929073.1|1439185_1439872_-	Smr/MutS family protein	NA	NA	NA	NA	NA
WP_010930948.1|1439858_1440818_-	thioredoxin-disulfide reductase	NA	A0A2I2L5E1	Orpheovirus	40.2	3.1e-57
WP_003814032.1|1440859_1443220_+	DNA translocase FtsK	NA	S5VNE3	Mycobacterium_phage	48.0	7.6e-81
WP_010930946.1|1443219_1443852_+	outer membrane lipoprotein chaperone LolA	NA	NA	NA	NA	NA
WP_010930945.1|1443953_1445294_+	replication-associated recombination protein A	NA	G3MBE0	Bacillus_virus	38.9	1.6e-75
WP_010930944.1|1445340_1446696_+|tRNA	serine--tRNA ligase	tRNA	A0A1B1IVT2	uncultured_Mediterranean_phage	47.5	1.6e-83
WP_170954289.1|1446821_1447466_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003814024.1|1447410_1447728_-	virulence factor	NA	NA	NA	NA	NA
WP_003814023.1|1448000_1448516_-	hypothetical protein	NA	T1SAR8	Salmonella_phage	44.6	5.1e-06
WP_003814022.1|1448609_1448771_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003814021.1|1448786_1449542_-	GGDEF domain-containing protein	NA	NA	NA	NA	NA
WP_019247690.1|1449880_1450087_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003814020.1|1450094_1450754_-	NAAT family transporter	NA	NA	NA	NA	NA
WP_010930941.1|1451048_1453253_-	TonB-dependent alcaligin siderophore receptor FauA	NA	NA	NA	NA	NA
WP_010930940.1|1453363_1454587_-	alcaligin siderophore export MFS transporter Bcr	NA	S4TR35	Salmonella_phage	29.4	9.8e-24
WP_003814017.1|1454709_1455684_-	alcaligin siderophore biosynthesis transcriptional regulator AlcR	NA	NA	NA	NA	NA
WP_005013753.1|1455751_1456945_-	alcaligin siderophore biosynthesis protein AlcE	NA	NA	NA	NA	NA
WP_003814016.1|1456959_1457760_-	alcaligin siderophore biosynthesis protein AlcD	NA	NA	NA	NA	NA
WP_010930939.1|1457756_1459613_-	alcaligin siderophore biosynthesis protein AlcC	NA	NA	NA	NA	NA
WP_003814014.1|1459609_1460215_-	alcaligin siderophore biosynthesis protein AlcB	NA	NA	NA	NA	NA
WP_003814013.1|1460233_1461619_-	alcaligin siderophore biosynthesis protein AlcA	NA	NA	NA	NA	NA
WP_003814012.1|1462344_1463571_+	cation:proton antiporter	NA	NA	NA	NA	NA
WP_003814011.1|1463659_1464442_+	3-hydroxybutyrate dehydrogenase	NA	NA	NA	NA	NA
WP_005012067.1|1464540_1465491_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814010.1|1465517_1466291_+	peroxide stress protein YaaA	NA	NA	NA	NA	NA
WP_003814009.1|1466302_1467544_+	MFS transporter	NA	NA	NA	NA	NA
WP_076879548.1|1469325_1470276_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 15
NZ_CP010847	Bordetella pertussis strain H622 chromosome, complete genome	4107431	1514201	1582287	4107431	tRNA,transposase	Streptococcus_virus(11.11%)	59	NA	NA
WP_010930416.1|1514201_1514690_+|tRNA	Cys-tRNA(Pro) deacylase	tRNA	NA	NA	NA	NA
WP_019248504.1|1514807_1515386_+	DJ-1/PfpI family protein	NA	NA	NA	NA	NA
WP_010930418.1|1515491_1515860_+	ribbon-helix-helix domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|1515958_1516909_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994932.1|1516915_1518028_-	D-alanyl-D-alanine endopeptidase	NA	NA	NA	NA	NA
WP_010930419.1|1518714_1519917_+	MFS transporter	NA	NA	NA	NA	NA
WP_004568212.1|1519952_1520099_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930420.1|1520120_1522781_+	PD-(D/E)XK nuclease family protein	NA	NA	NA	NA	NA
WP_010930421.1|1522793_1526198_+	UvrD-helicase domain-containing protein	NA	NA	NA	NA	NA
WP_023995689.1|1526865_1529091_+	DNA polymerase III subunit gamma/tau	NA	A0A1U9WR94	Streptococcus_virus	38.5	1.2e-43
WP_010930423.1|1529137_1529464_+	YbaB/EbfC family nucleoid-associated protein	NA	NA	NA	NA	NA
WP_010930424.1|1529514_1530123_+	recombination protein RecR	NA	NA	NA	NA	NA
WP_005013747.1|1530221_1531172_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930425.1|1531241_1532006_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930426.1|1532002_1532602_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930427.1|1532705_1533557_-	neutral zinc metallopeptidase	NA	A0A1I9SA48	Rhodococcus_phage	35.3	7.0e-37
WP_010928449.1|1533616_1534243_+	threonylcarbamoyl-AMP synthase	NA	NA	NA	NA	NA
WP_005012067.1|1534239_1535190_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019249265.1|1535288_1536401_-	DUF1513 domain-containing protein	NA	NA	NA	NA	NA
WP_019248041.1|1536390_1537392_-	imelysin family protein	NA	NA	NA	NA	NA
WP_019247498.1|1537497_1539009_-	c-type cytochrome	NA	NA	NA	NA	NA
WP_023853587.1|1539005_1540310_-	imelysin	NA	NA	NA	NA	NA
WP_010930431.1|1540421_1540982_-	membrane protein	NA	NA	NA	NA	NA
WP_010930432.1|1541249_1541804_+	NAD(P)H-dependent oxidoreductase	NA	A0A2P0ZL82	Lactobacillus_phage	32.0	1.7e-15
WP_010930433.1|1542259_1542475_-	dodecin domain-containing protein	NA	NA	NA	NA	NA
WP_033446228.1|1542729_1545327_+	DNA mismatch repair protein MutS	NA	A0A1V0SDQ0	Indivirus	22.6	1.5e-21
WP_010930435.1|1545323_1546511_+	cupin domain-containing protein	NA	NA	NA	NA	NA
WP_010930436.1|1547169_1547784_+	serotype 3 fimbrial subunit	NA	NA	NA	NA	NA
WP_010930437.1|1547872_1549000_-	outer membrane protein assembly factor BamC	NA	NA	NA	NA	NA
WP_033446216.1|1549011_1549917_-	4-hydroxy-tetrahydrodipicolinate synthase	NA	NA	NA	NA	NA
WP_005012067.1|1550809_1551760_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930439.1|1551941_1552694_+	glutamine ABC transporter substrate-binding protein GlnH	NA	NA	NA	NA	NA
WP_003811112.1|1552762_1553422_+	glutamine ABC transporter permease GlnP	NA	NA	NA	NA	NA
WP_003811113.1|1553418_1554147_+	glutamine ABC transporter ATP-binding protein GlnQ	NA	G9BWD6	Planktothrix_phage	39.3	3.3e-35
WP_010930440.1|1554159_1556439_-	bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase	NA	A0A1B1IUF0	uncultured_Mediterranean_phage	32.1	5.9e-06
WP_010930441.1|1556463_1556667_-	DNA-directed RNA polymerase subunit omega	NA	NA	NA	NA	NA
WP_010930442.1|1556708_1557341_-	guanylate kinase	NA	A0A218KC48	Bacillus_phage	33.9	2.4e-13
WP_010930443.1|1557476_1558394_-	c-type cytochrome	NA	NA	NA	NA	NA
WP_010930444.1|1558390_1559104_-	c-type cytochrome	NA	NA	NA	NA	NA
WP_003811135.1|1559341_1560112_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_003811137.1|1560116_1560716_-	C40 family peptidase	NA	A0A0A8WF62	Clostridium_phage	41.6	1.4e-20
WP_003811138.1|1560960_1562451_+	AMP nucleosidase	NA	NA	NA	NA	NA
WP_010926696.1|1562509_1562794_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010930445.1|1562931_1563087_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003811148.1|1563359_1564286_-	YicC family protein	NA	NA	NA	NA	NA
WP_003811149.1|1564422_1565163_+	ribonuclease PH	NA	NA	NA	NA	NA
WP_010930446.1|1565329_1566706_-	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_003811152.1|1566887_1567793_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930448.1|1569444_1571247_-	EAL domain-containing protein	NA	NA	NA	NA	NA
WP_010930449.1|1571373_1572015_+	RdgB/HAM1 family non-canonical purine NTP pyrophosphatase	NA	NA	NA	NA	NA
WP_005012808.1|1572113_1573064_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930450.1|1573085_1574306_+	oxygen-independent coproporphyrinogen III oxidase-like protein	NA	NA	NA	NA	NA
WP_003811164.1|1574491_1575904_+	type I glutamate--ammonia ligase	NA	NA	NA	NA	NA
WP_003811167.1|1575967_1577035_+	PAS domain-containing protein	NA	Q8QKV7	Ectocarpus_siliculosus_virus	23.5	1.1e-05
WP_010930451.1|1577034_1578522_+	nitrogen regulation protein NR(I)	NA	NA	NA	NA	NA
WP_010930452.1|1578531_1579476_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811176.1|1579635_1580334_+	pirin family protein	NA	NA	NA	NA	NA
WP_010930453.1|1580411_1581317_+	pirin family protein	NA	NA	NA	NA	NA
WP_005012067.1|1581336_1582287_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 16
NZ_CP010847	Bordetella pertussis strain H622 chromosome, complete genome	4107431	1618236	1673827	4107431	transposase	Brazilian_cedratvirus(25.0%)	47	NA	NA
WP_005013747.1|1618236_1619187_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930486.1|1619245_1620019_+	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_014486074.1|1620011_1621568_+	LTA synthase family protein	NA	NA	NA	NA	NA
WP_005013747.1|1621564_1622515_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003810741.1|1623841_1624444_-	TetR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003810743.1|1624683_1625385_-	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
WP_003816696.1|1625378_1626161_-	ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	25.8	2.0e-09
WP_005012808.1|1626345_1627296_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930483.1|1627394_1628132_-	TerC family protein	NA	A0A0S4KZH7	Pseudomonas_phage	46.6	4.1e-41
WP_010926609.1|1628321_1629080_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930482.1|1629126_1630116_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930481.1|1630293_1631262_-	transporter	NA	NA	NA	NA	NA
WP_010930480.1|1632801_1633770_+	AAA family ATPase	NA	NA	NA	NA	NA
WP_010930479.1|1633778_1634720_+	DUF58 domain-containing protein	NA	NA	NA	NA	NA
WP_010930478.1|1635193_1636204_+	VWA domain-containing protein	NA	NA	NA	NA	NA
WP_010930477.1|1636194_1637709_+	VWA domain-containing protein	NA	NA	NA	NA	NA
WP_010930476.1|1637705_1639052_+	BatD family protein	NA	NA	NA	NA	NA
WP_010930475.1|1639054_1640089_+	haloacid dehalogenase-like hydrolase	NA	NA	NA	NA	NA
WP_023852967.1|1640138_1641764_+	arylsulfatase	NA	A0A2P0VMN7	Tetraselmis_virus	52.2	2.0e-149
WP_005012067.1|1642316_1643267_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930487.1|1643371_1644319_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247865.1|1644372_1646187_-	sensor histidine kinase	NA	NA	NA	NA	NA
WP_010930489.1|1646179_1646854_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_023995112.1|1646983_1650058_+	autotransporter SphB2	NA	NA	NA	NA	NA
WP_019247905.1|1650071_1650371_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010930492.1|1650685_1651309_-	glutathione S-transferase family protein	NA	NA	NA	NA	NA
WP_010930493.1|1651552_1652422_+	TauD/TfdA family dioxygenase	NA	NA	NA	NA	NA
WP_010930494.1|1652399_1653344_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247909.1|1653429_1654356_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019247910.1|1654468_1655248_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930497.1|1655238_1656435_-	alpha-hydroxy-acid oxidizing protein	NA	NA	NA	NA	NA
WP_010930498.1|1656465_1657416_-	fumarylacetoacetate hydrolase family protein	NA	NA	NA	NA	NA
WP_010930499.1|1657637_1658327_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930500.1|1658391_1659147_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930501.1|1659198_1660191_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930502.1|1660200_1661154_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811538.1|1661269_1662232_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019249376.1|1663633_1664062_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|1664058_1665009_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_170954298.1|1665302_1666040_-	arsenical resistance protein ArsH	NA	A0A2H4J5V6	uncultured_Caudovirales_phage	68.2	1.3e-87
WP_010930504.1|1666463_1667651_-	MFS transporter	NA	NA	NA	NA	NA
WP_019249653.1|1667654_1668035_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010930506.1|1669754_1670726_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930507.1|1670739_1671453_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930508.1|1671457_1672375_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811452.1|1672481_1672778_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929588.1|1672876_1673827_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 17
NZ_CP010847	Bordetella pertussis strain H622 chromosome, complete genome	4107431	1906590	2038183	4107431	tRNA,transposase	uncultured_Caudovirales_phage(16.67%)	112	NA	NA
WP_003818515.1|1906590_1909248_-|tRNA	leucine--tRNA ligase	tRNA	A0A2H4PQS0	Staphylococcus_phage	39.0	3.3e-173
WP_010930709.1|1909325_1910528_-	MFS transporter	NA	NA	NA	NA	NA
WP_003810260.1|1910524_1911037_-	MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247822.1|1911159_1911597_-	HU family DNA-binding protein	NA	NA	NA	NA	NA
WP_010931070.1|1911873_1912824_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_062826579.1|1912922_1913873_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930710.1|1914126_1915932_+	STAS domain-containing protein	NA	A0A2H4J153	uncultured_Caudovirales_phage	27.5	2.2e-19
WP_010930711.1|1916045_1916213_-	50S ribosomal protein L33	NA	NA	NA	NA	NA
WP_003810297.1|1916276_1916513_-	50S ribosomal protein L28	NA	NA	NA	NA	NA
WP_010930712.1|1916881_1918081_-	multidrug effflux MFS transporter	NA	NA	NA	NA	NA
WP_010929591.1|1919596_1920547_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003818523.1|1920998_1922000_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003810306.1|1922172_1923030_+	proline/glycine betaine ABC transporter permease	NA	NA	NA	NA	NA
WP_003810308.1|1923026_1924289_+	glycine betaine/L-proline ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	36.6	6.8e-28
WP_003818524.1|1924389_1924764_+	tautomerase family protein	NA	NA	NA	NA	NA
WP_010930713.1|1924836_1926024_+	acetyl-CoA C-acyltransferase family protein	NA	NA	NA	NA	NA
WP_010930714.1|1926108_1926879_+	spermidine synthase	NA	NA	NA	NA	NA
WP_010930715.1|1926992_1927757_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930716.1|1927707_1929009_+	malonyl-CoA decarboxylase family protein	NA	NA	NA	NA	NA
WP_010930717.1|1929005_1929812_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003818532.1|1931556_1932528_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003818533.1|1932684_1933197_+	superoxide dismutase family protein	NA	Q9MC02	Salmonella_phage	52.3	1.8e-43
WP_010930718.1|1933355_1934330_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930719.1|1935330_1936125_+	ABC transporter ATP-binding protein	NA	A0A1V0SE00	Indivirus	25.7	5.1e-05
WP_003818535.1|1936150_1936957_-	TOBE domain-containing protein	NA	NA	NA	NA	NA
WP_003810329.1|1937067_1937658_+	DUF4136 domain-containing protein	NA	NA	NA	NA	NA
WP_010930720.1|1937668_1938847_+	patatin-like phospholipase family protein	NA	NA	NA	NA	NA
WP_010930721.1|1938949_1939324_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_019248531.1|1939576_1940908_+	efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
WP_019247651.1|1940974_1944205_+	multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_003810344.1|1945695_1946442_+	pyridoxine 5'-phosphate synthase	NA	NA	NA	NA	NA
WP_010930724.1|1946526_1946988_+	holo-ACP synthase	NA	NA	NA	NA	NA
WP_010930725.1|1947025_1948084_+	beta-N-acetylhexosaminidase	NA	NA	NA	NA	NA
WP_010930726.1|1948046_1949876_+	excinuclease ABC subunit UvrC	NA	NA	NA	NA	NA
WP_003810356.1|1949915_1950488_+	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	NA	NA	NA	NA	NA
WP_010930727.1|1951912_1952734_-	NADPH-dependent 7-cyano-7-deazaguanine reductase QueF	NA	A0A2I7SAX1	Vibrio_phage	37.6	4.1e-42
WP_010930728.1|1953052_1954375_+	isocitrate lyase	NA	NA	NA	NA	NA
WP_010930729.1|1954734_1955370_+	membrane protein	NA	NA	NA	NA	NA
WP_010930730.1|1955329_1956280_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930731.1|1957150_1958023_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010930732.1|1958100_1959240_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930733.1|1959598_1960855_+	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA	NA
WP_003816691.1|1960860_1961388_+	aromatic-ring-hydroxylating dioxygenase subunit beta	NA	NA	NA	NA	NA
WP_003816690.1|1961392_1962211_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003816687.1|1962210_1962933_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930735.1|1962954_1963269_+	2Fe-2S iron-sulfur cluster binding domain-containing protein	NA	NA	NA	NA	NA
WP_010930736.1|1963286_1964435_+	CoA transferase	NA	NA	NA	NA	NA
WP_010930737.1|1964465_1965341_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003816680.1|1965337_1966657_-	AMP-binding protein	NA	NA	NA	NA	NA
WP_014486081.1|1966729_1967926_-	acetyl-CoA acetyltransferase	NA	NA	NA	NA	NA
WP_010930739.1|1967936_1969424_-	hydroxymethylglutaryl-CoA synthase family protein	NA	NA	NA	NA	NA
WP_010930740.1|1972018_1972918_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_023852887.1|1973055_1974021_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_005015810.1|1974119_1975070_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005015810.1|1975168_1976119_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|1976340_1977291_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812024.1|1977287_1977590_-	SelT/SelW/SelH family protein	NA	NA	NA	NA	NA
WP_003812026.1|1977749_1978154_+	group III truncated hemoglobin	NA	NA	NA	NA	NA
WP_010930743.1|1978146_1979373_+	NnrS family protein	NA	NA	NA	NA	NA
WP_003812030.1|1979369_1979816_+	membrane protein	NA	NA	NA	NA	NA
WP_003812032.1|1979885_1980668_+	exodeoxyribonuclease III	NA	NA	NA	NA	NA
WP_010930744.1|1980709_1982215_+	M81 family metallopeptidase	NA	NA	NA	NA	NA
WP_019247851.1|1982500_1983334_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930745.1|1984771_1985593_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_010930746.1|1985611_1986466_-	polysaccharide deacetylase	NA	NA	NA	NA	NA
WP_003812044.1|1986469_1987441_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019247855.1|1988125_1988302_+	winged helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_005013747.1|1988787_1989738_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812172.1|1990875_1991172_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247707.1|1991346_1992699_+	glutathione-disulfide reductase	NA	A0A2K5B2C5	Erysipelothrix_phage	27.6	2.9e-45
WP_010930153.1|1992841_1993858_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010930748.1|1995837_1996851_-	pyridoxamine 5'-phosphate oxidase family protein	NA	NA	NA	NA	NA
WP_010930749.1|1996937_1997843_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003812179.1|1997999_1998344_+	exported protein	NA	NA	NA	NA	NA
WP_010930750.1|1998501_1998960_+	(2Fe-2S)-binding protein	NA	NA	NA	NA	NA
WP_010930751.1|1998973_2001190_+	xanthine dehydrogenase family protein molybdopterin-binding subunit	NA	NA	NA	NA	NA
WP_003812183.1|2001186_2002248_+	XdhC family protein	NA	NA	NA	NA	NA
WP_010930752.1|2002276_2003251_+	AraC family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930753.1|2003202_2004021_-	hypothetical protein	NA	A0A1B1INV8	uncultured_Mediterranean_phage	28.8	2.3e-16
WP_003812191.1|2004033_2004642_-	LON peptidase substrate-binding domain-containing protein	NA	NA	NA	NA	NA
WP_010930754.1|2004816_2005212_+	VOC family protein	NA	NA	NA	NA	NA
WP_010930755.1|2005230_2006670_+	MFS transporter	NA	A0A0M3UL24	Mycobacterium_phage	37.4	7.4e-55
WP_003812199.1|2006698_2007046_+	GFA family protein	NA	NA	NA	NA	NA
WP_010929577.1|2007064_2008015_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|2008667_2009618_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023997035.1|2009701_2011519_+	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	27.4	2.3e-37
WP_019247659.1|2011592_2012240_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930758.1|2012252_2013182_-	ZIP family metal transporter	NA	NA	NA	NA	NA
WP_014905663.1|2013351_2013816_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003816977.1|2014063_2014744_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003816975.1|2014792_2016484_+	STAS domain-containing protein	NA	A0A2H4J153	uncultured_Caudovirales_phage	27.3	5.0e-42
WP_010930760.1|2016499_2017051_-	SRPBCC family protein	NA	NA	NA	NA	NA
WP_003816971.1|2017047_2017419_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010930761.1|2017531_2018368_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_029443822.1|2018378_2018903_-	DUF302 domain-containing protein	NA	NA	NA	NA	NA
WP_003812228.1|2019000_2019180_+	DUF3008 family protein	NA	NA	NA	NA	NA
WP_010930763.1|2019309_2020284_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003816964.1|2020414_2020771_+	DUF1428 domain-containing protein	NA	NA	NA	NA	NA
WP_010930764.1|2020760_2021636_-	PhzF family phenazine biosynthesis protein	NA	NA	NA	NA	NA
WP_010930765.1|2021734_2022619_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930766.1|2022640_2023936_-	DUF445 domain-containing protein	NA	NA	NA	NA	NA
WP_003816959.1|2024884_2025535_+	NAD(P)H-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010930767.1|2025622_2027143_-	aldehyde dehydrogenase	NA	NA	NA	NA	NA
WP_010930768.1|2027400_2029266_+	sigma-54-dependent Fis family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|2030311_2031262_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_162268681.1|2031279_2031420_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930769.1|2032234_2032594_-	CidA/LrgA family protein	NA	NA	NA	NA	NA
WP_010930770.1|2032581_2034018_-	dethiobiotin synthase	NA	NA	NA	NA	NA
WP_010930771.1|2034014_2034668_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_010930772.1|2034664_2035858_-	8-amino-7-oxononanoate synthase	NA	NA	NA	NA	NA
WP_010930773.1|2035961_2037236_+	adenosylmethionine--8-amino-7-oxononanoate transaminase	NA	A0A1V0SKB7	Klosneuvirus	28.9	9.6e-14
WP_005012067.1|2037232_2038183_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 18
NZ_CP010847	Bordetella pertussis strain H622 chromosome, complete genome	4107431	2049387	2090078	4107431	tRNA,transposase,protease	Klosneuvirus(25.0%)	37	NA	NA
WP_005013747.1|2049387_2050338_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|2050436_2051387_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_047122784.1|2051346_2051760_-	transcriptional regulator	NA	A0A222YXG1	Escherichia_phage	59.0	3.8e-36
WP_003816708.1|2052044_2052344_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930783.1|2052753_2055036_-	RNA polymerase sigma factor RpoD	NA	A0A2I7SAT0	Vibrio_phage	30.1	3.2e-36
WP_124740709.1|2055501_2055696_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930784.1|2055721_2057752_-	DNA primase	NA	A0A0K1LMQ9	Caulobacter_phage	41.9	1.0e-65
WP_006218592.1|2057771_2057984_-	30S ribosomal protein S21	NA	NA	NA	NA	NA
WP_003810720.1|2058261_2058801_-	phosphoribosyltransferase	NA	NA	NA	NA	NA
WP_023852902.1|2058914_2060210_-	adenylosuccinate synthase	NA	A0A160ER07	Powai_lake_megavirus	33.5	3.0e-63
WP_010930786.1|2060286_2061444_-	ATP phosphoribosyltransferase regulatory subunit	NA	NA	NA	NA	NA
WP_010930787.1|2061627_2062527_-|protease	protease modulator HflC	protease	NA	NA	NA	NA
WP_010930788.1|2062545_2063850_-|protease	FtsH protease activity modulator HflK	protease	NA	NA	NA	NA
WP_010930789.1|2063815_2064922_-	GTPase HflX	NA	NA	NA	NA	NA
WP_003810707.1|2065009_2065246_-	RNA chaperone Hfq	NA	NA	NA	NA	NA
WP_010930790.1|2065384_2066455_-	histidinol-phosphate transaminase	NA	A0A1X6WGT4	Pacmanvirus	25.7	2.5e-15
WP_003810703.1|2066458_2067814_-	ribosome biogenesis GTPase Der	NA	NA	NA	NA	NA
WP_003810701.1|2067840_2069001_-	outer membrane protein assembly factor BamB	NA	NA	NA	NA	NA
WP_010930791.1|2069003_2069642_-	tetratricopeptide repeat protein	NA	NA	NA	NA	NA
WP_023995843.1|2069643_2070930_-|tRNA	histidine--tRNA ligase	tRNA	NA	NA	NA	NA
WP_010930793.1|2070988_2072284_-	flavodoxin-dependent (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase	NA	NA	NA	NA	NA
WP_003810693.1|2072290_2072797_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_004568542.1|2072793_2073942_-	23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN	NA	NA	NA	NA	NA
WP_003810689.1|2073969_2074395_-	nucleoside-diphosphate kinase	NA	D2E8E1	Anguillid_herpesvirus	43.2	2.1e-21
WP_010930794.1|2074717_2077600_+|tRNA	valine--tRNA ligase	tRNA	A0A1V0SK04	Klosneuvirus	37.1	3.7e-138
WP_023852900.1|2077692_2078448_-	MipA/OmpV family protein	NA	NA	NA	NA	NA
WP_010930796.1|2079213_2080563_+	two-component sensor histidine kinase	NA	NA	NA	NA	NA
WP_076879566.1|2080661_2081612_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930048.1|2081710_2082661_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930594.1|2082734_2083208_+	RidA family protein	NA	NA	NA	NA	NA
WP_010930593.1|2083233_2084442_+	aminotransferase class V-fold PLP-dependent enzyme	NA	NA	NA	NA	NA
WP_003816734.1|2084438_2085212_-|tRNA	tRNA (guanosine(37)-N1)-methyltransferase TrmD	tRNA	NA	NA	NA	NA
WP_014905757.1|2085211_2085835_-	ribosome maturation factor RimM	NA	NA	NA	NA	NA
WP_010926757.1|2086000_2086261_-	30S ribosomal protein S16	NA	NA	NA	NA	NA
WP_010930591.1|2086564_2087146_+	hypothetical protein	NA	NA	NA	NA	NA
WP_004568544.1|2087212_2087467_-	sulfurtransferase TusA family protein	NA	NA	NA	NA	NA
WP_010930590.1|2087453_2090078_-|tRNA	alanine--tRNA ligase	tRNA	A0A1V0SK38	Klosneuvirus	39.4	1.7e-81
>prophage 19
NZ_CP010847	Bordetella pertussis strain H622 chromosome, complete genome	4107431	2117861	2183410	4107431	tRNA,transposase,protease	Lake_Baikal_phage(20.0%)	58	NA	NA
WP_010929577.1|2117861_2118812_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930573.1|2119012_2119822_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_005013747.1|2119946_2120897_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930572.1|2120893_2121787_-	methylglyoxal synthase	NA	NA	NA	NA	NA
WP_003812452.1|2121911_2122106_-	Fe-S cluster assembly protein IscX	NA	NA	NA	NA	NA
WP_003812453.1|2122105_2122447_-	ISC system 2Fe-2S type ferredoxin	NA	NA	NA	NA	NA
WP_010930571.1|2122456_2124319_-	Fe-S protein assembly chaperone HscA	NA	A0A0N9QXN8	Chrysochromulina_ericina_virus	42.4	3.0e-101
WP_003812456.1|2124448_2124961_-	Fe-S protein assembly co-chaperone HscB	NA	NA	NA	NA	NA
WP_003812458.1|2124963_2125287_-	iron-sulfur cluster assembly protein IscA	NA	A0A2H4N7N5	Lake_Baikal_phage	52.8	6.8e-25
WP_003812460.1|2125288_2125699_-	Fe-S cluster assembly scaffold IscU	NA	A0A218MKD1	uncultured_virus	79.0	7.5e-53
WP_010930570.1|2125736_2126948_-	IscS subfamily cysteine desulfurase	NA	NA	NA	NA	NA
WP_003812463.1|2126965_2127478_-	Fe-S cluster assembly transcriptional regulator IscR	NA	NA	NA	NA	NA
WP_010930569.1|2127693_2128185_-	low molecular weight phosphotyrosine protein phosphatase	NA	NA	NA	NA	NA
WP_010930568.1|2128437_2130474_-	excinuclease ABC subunit UvrB	NA	NA	NA	NA	NA
WP_019247244.1|2130551_2131754_+	aspartate/tyrosine/aromatic aminotransferase	NA	NA	NA	NA	NA
WP_010930566.1|2131882_2132533_+	transcriptional repressor LexA	NA	A0A2H4JG58	uncultured_Caudovirales_phage	50.7	3.3e-10
WP_005012067.1|2134090_2135041_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247934.1|2135611_2135824_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247935.1|2135841_2136573_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003812478.1|2136607_2137249_-	CoA transferase subunit B	NA	NA	NA	NA	NA
WP_010930565.1|2137241_2137910_-	3-oxoacid CoA-transferase subunit A	NA	NA	NA	NA	NA
WP_010930564.1|2140122_2140899_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930563.1|2140920_2142078_-	thiolase	NA	NA	NA	NA	NA
WP_003812491.1|2142074_2142506_-	OB-fold domain-containing protein	NA	NA	NA	NA	NA
WP_015063637.1|2142502_2143306_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010930561.1|2143319_2143721_-	MaoC family dehydratase	NA	NA	NA	NA	NA
WP_010930560.1|2143787_2144759_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930559.1|2144824_2146048_-	CoA transferase	NA	NA	NA	NA	NA
WP_019247936.1|2146275_2147226_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930557.1|2147349_2149803_-	endopeptidase La	NA	A0A0R6PGP8	Moraxella_phage	52.0	1.5e-220
WP_010930556.1|2149991_2151296_-|protease	ATP-dependent Clp protease ATP-binding subunit ClpX	protease	G3M9Z9	Bacillus_virus	53.8	3.2e-129
WP_003812508.1|2151400_2152054_-	ATP-dependent Clp endopeptidase proteolytic subunit ClpP	NA	A0A223W000	Agrobacterium_phage	57.5	6.8e-56
WP_010930555.1|2152056_2153367_-	trigger factor	NA	NA	NA	NA	NA
WP_010930554.1|2153563_2154124_+	TIGR00645 family protein	NA	K4K6D8	Caulobacter_phage	33.7	1.0e-23
WP_010930553.1|2154235_2154436_-	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	64.4	7.4e-14
WP_003812519.1|2154781_2155348_-	DUF924 family protein	NA	NA	NA	NA	NA
WP_010930551.1|2155431_2155635_-	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	62.1	1.6e-16
WP_003812524.1|2155941_2156262_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003812526.1|2156303_2156585_-	membrane protein	NA	NA	NA	NA	NA
WP_010930550.1|2156659_2157916_-	autotransporter Phg	NA	NA	NA	NA	NA
WP_010930549.1|2158298_2158628_+	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
WP_003812536.1|2160198_2161020_+	2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase	NA	NA	NA	NA	NA
WP_010930548.1|2161019_2162159_+	succinyl-diaminopimelate desuccinylase	NA	NA	NA	NA	NA
WP_019247938.1|2162165_2163062_+	50S ribosomal protein L3 N(5)-glutamine methyltransferase	NA	NA	NA	NA	NA
WP_010930546.1|2163058_2164984_+	ATP-binding cassette domain-containing protein	NA	A0A2K9L0W2	Tupanvirus	31.8	1.1e-66
WP_010926400.1|2165343_2167956_+	TonB-dependent receptor	NA	NA	NA	NA	NA
WP_003812546.1|2168008_2170309_-	UvrD-helicase domain-containing protein	NA	A7KV33	Bacillus_phage	35.9	9.9e-110
WP_003812548.1|2170305_2171514_-	fatty acid desaturase	NA	NA	NA	NA	NA
WP_010930545.1|2171775_2172150_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|2172146_2173097_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_076879626.1|2173195_2175190_-	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	33.3	4.4e-21
WP_010930543.1|2175249_2176215_+	bifunctional riboflavin kinase/FAD synthetase	NA	NA	NA	NA	NA
WP_010930542.1|2176204_2179066_+|tRNA	isoleucine--tRNA ligase	tRNA	A0A1V0SJ93	Klosneuvirus	25.5	1.0e-71
WP_010930541.1|2179068_2179575_+	lipoprotein signal peptidase	NA	NA	NA	NA	NA
WP_010930540.1|2179679_2180888_+	bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC	NA	Q9HH70	Methanothermobacter_phage	30.0	3.8e-36
WP_033446178.1|2180889_2181828_-	membrane protein	NA	NA	NA	NA	NA
WP_010930538.1|2181989_2182463_+	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012808.1|2182459_2183410_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 20
NZ_CP010847	Bordetella pertussis strain H622 chromosome, complete genome	4107431	2477057	2535301	4107431	tRNA,transposase	Planktothrix_phage(28.57%)	54	NA	NA
WP_005012067.1|2477057_2478008_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930388.1|2478487_2479144_-	phosphoribosylanthranilate isomerase	NA	NA	NA	NA	NA
WP_010930387.1|2479158_2480826_-	TRAP transporter large permease subunit	NA	NA	NA	NA	NA
WP_010930386.1|2480828_2481458_-	TRAP transporter small permease subunit	NA	NA	NA	NA	NA
WP_014486072.1|2481669_2482764_-	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930384.1|2482908_2483721_-|tRNA	tRNA pseudouridine(38-40) synthase TruA	tRNA	NA	NA	NA	NA
WP_023853502.1|2483724_2485428_-	FimV N-terminal domain protein	NA	NA	NA	NA	NA
WP_010930382.1|2485478_2486609_-	aspartate-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
WP_010930381.1|2486795_2487872_-	3-isopropylmalate dehydrogenase	NA	NA	NA	NA	NA
WP_010930380.1|2487953_2488604_-	3-isopropylmalate dehydratase small subunit	NA	NA	NA	NA	NA
WP_010930379.1|2488618_2490022_-	3-isopropylmalate dehydratase large subunit	NA	NA	NA	NA	NA
WP_004567445.1|2490305_2491124_-	substrate-binding domain-containing protein	NA	NA	NA	NA	NA
WP_010930378.1|2491120_2491825_-	phosphate ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.0	2.6e-13
WP_010930377.1|2492724_2493840_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_004567447.1|2493873_2494248_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930376.1|2494270_2495428_-	formate dehydrogenase subunit gamma	NA	NA	NA	NA	NA
WP_003812666.1|2495440_2495674_-	lipoprotein	NA	NA	NA	NA	NA
WP_019247523.1|2496308_2499278_-	formate dehydrogenase subunit alpha	NA	NA	NA	NA	NA
WP_023853518.1|2499292_2499502_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019248667.1|2499653_2500283_-	molecular chaperone TorD family protein	NA	NA	NA	NA	NA
WP_010930373.1|2500279_2502370_-	4Fe-4S binding protein	NA	NA	NA	NA	NA
WP_010930372.1|2502393_2503074_-	DUF3306 domain-containing protein	NA	NA	NA	NA	NA
WP_003820494.1|2503070_2503631_-	DUF3305 domain-containing protein	NA	NA	NA	NA	NA
WP_004567450.1|2503637_2504735_-	iron-sulfur cluster carrier protein ApbC	NA	NA	NA	NA	NA
WP_010930371.1|2504887_2505481_+	molybdenum cofactor guanylyltransferase MobA	NA	NA	NA	NA	NA
WP_010930370.1|2505477_2506770_+	molybdopterin molybdotransferase MoeA	NA	NA	NA	NA	NA
WP_003812685.1|2506783_2507326_+	molybdopterin-guanine dinucleotide biosynthesis protein B	NA	NA	NA	NA	NA
WP_010930369.1|2507335_2508172_-	M48 family metallopeptidase	NA	NA	NA	NA	NA
WP_003820487.1|2508205_2509267_-	chorismate synthase	NA	A0A291AU41	Pandoravirus	42.8	2.9e-80
WP_019247210.1|2509308_2510361_-	EAL domain-containing protein	NA	NA	NA	NA	NA
WP_019247209.1|2510376_2510679_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012808.1|2510820_2511771_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_162268680.1|2511788_2511953_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930368.1|2511949_2513644_+	iron ABC transporter permease	NA	NA	NA	NA	NA
WP_003809599.1|2513640_2514726_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	37.7	6.4e-27
WP_010930367.1|2514773_2515673_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003809593.1|2515683_2516328_+	histidine phosphatase family protein	NA	NA	NA	NA	NA
WP_010930366.1|2517349_2520592_-	carbamoyl-phosphate synthase large subunit	NA	NA	NA	NA	NA
WP_023852833.1|2520602_2521757_-	glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit	NA	R4TGJ8	Halovirus	35.4	3.3e-53
WP_010930364.1|2521983_2522946_+	transaldolase	NA	H6WFR1	Cyanophage	29.2	7.5e-11
WP_076879624.1|2523044_2523995_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930363.1|2524093_2525044_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930362.1|2525053_2525743_-	VIT family protein	NA	NA	NA	NA	NA
WP_003811741.1|2525802_2526240_-	PaaI family thioesterase	NA	NA	NA	NA	NA
WP_062826531.1|2526285_2527179_-	3-hydroxyisobutyrate dehydrogenase	NA	NA	NA	NA	NA
WP_003811746.1|2527226_2528399_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003811748.1|2528395_2529550_-	acyl-CoA dehydrogenase family protein	NA	NA	NA	NA	NA
WP_003811750.1|2529746_2530097_-	RnfH family protein	NA	NA	NA	NA	NA
WP_003811752.1|2530086_2530521_-	type II toxin-antitoxin system RatA family toxin	NA	NA	NA	NA	NA
WP_010930800.1|2530537_2531488_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811754.1|2531635_2532103_+	SsrA-binding protein SmpB	NA	W5RAM5	Staphylococcus_phage	45.1	6.2e-27
WP_010930360.1|2532083_2533241_-	GGDEF domain-containing protein	NA	A0A127AWB9	Bacillus_phage	36.2	2.3e-14
WP_003811759.1|2533306_2534233_-	paraslipin	NA	NA	NA	NA	NA
WP_005012067.1|2534350_2535301_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 21
NZ_CP010847	Bordetella pertussis strain H622 chromosome, complete genome	4107431	2577579	2644079	4107431	transposase	uncultured_Caudovirales_phage(40.0%)	56	NA	NA
WP_005012067.1|2577579_2578530_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811850.1|2578899_2579472_+	flagellar basal body-associated protein FliL	NA	NA	NA	NA	NA
WP_003811852.1|2579474_2580485_+	flagellar motor switch protein FliM	NA	NA	NA	NA	NA
WP_010930335.1|2580477_2580978_+	flagellar motor switch protein FliN	NA	NA	NA	NA	NA
WP_003811855.1|2580988_2581330_+	flagellar biosynthetic protein FliO	NA	NA	NA	NA	NA
WP_015041547.1|2581341_2582133_+	flagellar type III secretion system pore protein FliP	NA	NA	NA	NA	NA
WP_003811859.1|2582149_2582419_+	flagellar biosynthesis protein FliQ	NA	NA	NA	NA	NA
WP_010930333.1|2582441_2583230_+	flagellar biosynthetic protein FliR	NA	NA	NA	NA	NA
WP_010929632.1|2583276_2584293_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_014486070.1|2584509_2585952_-	PAS domain-containing protein	NA	A0A1B0V854	Salmonella_phage	41.8	1.0e-35
WP_010930332.1|2586130_2587750_-	Tar ligand binding domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	45.3	1.5e-08
WP_010930331.1|2587870_2589691_-	Tar ligand binding domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	52.6	6.4e-11
WP_010930330.1|2589769_2591302_-	flagellar hook-associated protein FlgL	NA	NA	NA	NA	NA
WP_010930329.1|2591335_2592982_-	flagellar hook-associated protein FlgK	NA	NA	NA	NA	NA
WP_010930328.1|2593051_2594074_-	flagellar assembly peptidoglycan hydrolase FlgJ	NA	A0A088F6W1	Sulfitobacter_phage	31.4	1.9e-12
WP_010930327.1|2594091_2595225_-	flagellar basal body P-ring protein FlgI	NA	NA	NA	NA	NA
WP_010930326.1|2595227_2595917_-	flagellar basal body L-ring protein FlgH	NA	NA	NA	NA	NA
WP_010930325.1|2595916_2596702_-	flagellar basal-body rod protein FlgG	NA	NA	NA	NA	NA
WP_003817181.1|2596745_2597510_-	flagellar basal body rod protein FlgF	NA	NA	NA	NA	NA
WP_003817180.1|2597548_2598970_-	flagellar hook-basal body complex protein	NA	NA	NA	NA	NA
WP_010930324.1|2599035_2599740_-	flagellar basal body rod modification protein FlgD	NA	NA	NA	NA	NA
WP_003817176.1|2599787_2600207_-	flagellar basal body rod protein FlgC	NA	NA	NA	NA	NA
WP_010930323.1|2600219_2600627_-	flagellar basal body rod protein FlgB	NA	NA	NA	NA	NA
WP_010930322.1|2600810_2601521_+	flagellar basal body P-ring formation protein FlgA	NA	NA	NA	NA	NA
WP_003817172.1|2601647_2601938_+	flagellar biosynthesis anti-sigma factor FlgM	NA	NA	NA	NA	NA
WP_003817170.1|2601955_2602438_+	flagellar protein FlgN	NA	NA	NA	NA	NA
WP_010930321.1|2606943_2608098_-	flagellar type III secretion system protein FlhB	NA	NA	NA	NA	NA
WP_010931363.1|2608403_2609420_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010930319.1|2609666_2610455_+	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003812020.1|2610521_2611202_+	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003812022.1|2611198_2611969_+	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	39.1	9.8e-30
WP_010930208.1|2612067_2613018_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811401.1|2613073_2613991_-	2-dehydropantoate 2-reductase	NA	NA	NA	NA	NA
WP_003811400.1|2614001_2615180_-	mandelate racemase/muconate lactonizing enzyme family protein	NA	NA	NA	NA	NA
WP_010930318.1|2615199_2616195_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003811396.1|2617783_2618392_+	3-isopropylmalate dehydratase small subunit	NA	NA	NA	NA	NA
WP_003811393.1|2618379_2619420_+	LacI family DNA-binding transcriptional regulator	NA	NA	NA	NA	NA
WP_003811391.1|2619437_2620400_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003811389.1|2620396_2621590_-	CoA transferase	NA	NA	NA	NA	NA
WP_010930317.1|2621586_2622384_-	citryl-CoA lyase	NA	NA	NA	NA	NA
WP_014486069.1|2622409_2623396_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930316.1|2623414_2625454_-	acetate--CoA ligase family protein	NA	NA	NA	NA	NA
WP_010930315.1|2625655_2626336_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930314.1|2626349_2627261_-	CoA ester lyase	NA	NA	NA	NA	NA
WP_003811381.1|2627257_2627836_-	NAD(P)H-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010930313.1|2627974_2628880_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930312.1|2628887_2632307_+	TM0106 family RecB-like putative nuclease	NA	NA	NA	NA	NA
WP_010930311.1|2632294_2634895_-	BP1344/BB2830 family autotransporter	NA	NA	NA	NA	NA
WP_003811375.1|2635850_2636483_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003811372.1|2636876_2637635_+	endonuclease/exonuclease/phosphatase family protein	NA	NA	NA	NA	NA
WP_003811370.1|2637631_2638834_+	cardiolipin synthase ClsB	NA	NA	NA	NA	NA
WP_010930208.1|2639021_2639972_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930310.1|2640879_2642025_+	DUF3182 family protein	NA	NA	NA	NA	NA
WP_019247449.1|2642011_2642767_+	alpha/beta fold hydrolase	NA	NA	NA	NA	NA
WP_003811361.1|2642883_2643063_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930208.1|2643128_2644079_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 22
NZ_CP010847	Bordetella pertussis strain H622 chromosome, complete genome	4107431	2806635	2861152	4107431	transposase	Diachasmimorpha_longicaudata_entomopoxvirus(20.0%)	48	NA	NA
WP_023853639.1|2806635_2807586_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931071.1|2807914_2808520_+	fimbrial major subunit FimX	NA	NA	NA	NA	NA
WP_010931072.1|2808573_2809887_-	phenylacetate--CoA ligase	NA	NA	NA	NA	NA
WP_003813284.1|2809961_2810432_-	hydroxyphenylacetyl-CoA thioesterase PaaI	NA	NA	NA	NA	NA
WP_010931073.1|2810431_2811220_-	2-(1,2-epoxy-1,2-dihydrophenyl)acetyl-CoA isomerase	NA	NA	NA	NA	NA
WP_010931074.1|2811230_2812883_-	phenylacetic acid degradation protein PaaN	NA	NA	NA	NA	NA
WP_076879566.1|2812970_2813921_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929591.1|2814019_2814970_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931075.1|2816131_2816638_-	phenylacetate-CoA oxygenase subunit PaaJ	NA	NA	NA	NA	NA
WP_003813293.1|2816634_2817399_-	phenylacetate-CoA oxygenase subunit PaaC	NA	NA	NA	NA	NA
WP_010931076.1|2817414_2817699_-	1,2-phenylacetyl-CoA epoxidase subunit B	NA	NA	NA	NA	NA
WP_003813298.1|2817763_2818753_-	1,2-phenylacetyl-CoA epoxidase subunit A	NA	NA	NA	NA	NA
WP_010931077.1|2818924_2819854_+	phenylacetic acid degradation operon negative regulatory protein PaaX	NA	NA	NA	NA	NA
WP_003813302.1|2819825_2820512_-	NAD(P)H-hydrate epimerase	NA	NA	NA	NA	NA
WP_003813303.1|2820545_2821091_-	oligoribonuclease	NA	Q8B5Y0	Diachasmimorpha_longicaudata_entomopoxvirus	37.7	2.1e-26
WP_003813306.1|2821135_2822401_+	M48 family metallopeptidase	NA	NA	NA	NA	NA
WP_003813309.1|2822397_2823300_+	ribosome small subunit-dependent GTPase A	NA	NA	NA	NA	NA
WP_019247679.1|2824481_2825426_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931079.1|2825520_2827038_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931080.1|2827079_2828708_-	gamma-glutamyltransferase	NA	NA	NA	NA	NA
WP_003811986.1|2828815_2829697_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931081.1|2832809_2833184_+	endonuclease	NA	F4YXR7	Roseobacter_phage	54.4	2.1e-25
WP_003812004.1|2833208_2833547_-	P-II family nitrogen regulator	NA	NA	NA	NA	NA
WP_010931082.1|2833590_2835225_-	NAD+ synthase	NA	A0A2L0UZF5	Agrobacterium_phage	36.6	8.3e-87
WP_010931083.1|2835263_2836610_-	mechanosensitive ion channel family protein	NA	NA	NA	NA	NA
WP_003812010.1|2836717_2838139_+	argininosuccinate lyase	NA	NA	NA	NA	NA
WP_010931084.1|2838208_2838793_-	nitroreductase	NA	NA	NA	NA	NA
WP_005012067.1|2838895_2839846_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931085.1|2839980_2841087_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010931086.1|2841097_2842195_+	GTP 3',8-cyclase MoaA	NA	NA	NA	NA	NA
WP_010931087.1|2842339_2843545_-	molybdopterin molybdotransferase MoeA	NA	NA	NA	NA	NA
WP_010931088.1|2843551_2844073_-	molybdenum cofactor biosynthesis protein B	NA	NA	NA	NA	NA
WP_010931089.1|2844069_2844561_-	molybdenum cofactor biosynthesis protein MoaE	NA	NA	NA	NA	NA
WP_003819740.1|2844557_2844809_-	MoaD/ThiS family protein	NA	NA	NA	NA	NA
WP_003819741.1|2844789_2845275_-	cyclic pyranopterin monophosphate synthase MoaC	NA	NA	NA	NA	NA
WP_010931090.1|2845410_2848872_+	DUF748 domain-containing protein	NA	NA	NA	NA	NA
WP_010931091.1|2848889_2849774_+	dienelactone hydrolase family protein	NA	NA	NA	NA	NA
WP_010931092.1|2849783_2850215_-	lipoprotein	NA	NA	NA	NA	NA
WP_003809348.1|2850461_2850965_+	peroxiredoxin	NA	M1I839	Pelagibacter_phage	44.1	1.8e-24
WP_010931094.1|2851042_2852443_+	MFS transporter	NA	NA	NA	NA	NA
WP_010931095.1|2852517_2853393_-	membrane protein	NA	NA	NA	NA	NA
WP_023853546.1|2853389_2854397_-	biotin synthase BioB	NA	NA	NA	NA	NA
WP_010931097.1|2854864_2855170_+	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
WP_003819753.1|2855260_2855851_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930525.1|2856041_2857058_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010931098.1|2857249_2859586_-	heavy metal translocating P-type ATPase	NA	E4ZFI9	Streptococcus_phage	42.8	3.2e-124
WP_003812014.1|2859668_2860103_+	Cd(II)/Pb(II)-responsive transcriptional regulator	NA	NA	NA	NA	NA
WP_010931070.1|2860201_2861152_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 23
NZ_CP010847	Bordetella pertussis strain H622 chromosome, complete genome	4107431	2869177	2925963	4107431	transposase,protease	uncultured_Mediterranean_phage(28.57%)	41	NA	NA
WP_005012067.1|2869177_2870128_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931105.1|2871834_2872101_-	accessory factor UbiK family protein	NA	NA	NA	NA	NA
WP_003812839.1|2872808_2873147_+	P-II family nitrogen regulator	NA	NA	NA	NA	NA
WP_010931107.1|2877700_2878303_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931108.1|2878399_2879689_+	MFS transporter	NA	NA	NA	NA	NA
WP_003812846.1|2879746_2880478_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	31.0	1.4e-12
WP_010931109.1|2880474_2881278_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	23.5	7.9e-14
WP_003812851.1|2881274_2882363_-	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
WP_003820410.1|2882359_2883289_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003812857.1|2883437_2884583_-	branched-chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930800.1|2884604_2885555_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_154698391.1|2885572_2885731_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931110.1|2885885_2889707_-	trifunctional transcriptional regulator/proline dehydrogenase/L-glutamate gamma-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
WP_010931111.1|2889863_2890532_-	membrane integrity-associated transporter subunit PqiC	NA	NA	NA	NA	NA
WP_014905522.1|2890536_2892210_-	MCE family protein	NA	NA	NA	NA	NA
WP_003820402.1|2892228_2893548_-	PqiA/YebS family transporter subunit	NA	NA	NA	NA	NA
WP_010931114.1|2893552_2895868_-|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	protease	A0A223W0B1	Agrobacterium_phage	41.9	4.1e-164
WP_010931115.1|2895923_2898092_-	penicillin-binding protein 1C	NA	NA	NA	NA	NA
WP_010931116.1|2898088_2903278_-	alpha-2-macroglobulin family protein	NA	NA	NA	NA	NA
WP_003820400.1|2903367_2903682_-|protease	ATP-dependent Clp protease adapter ClpS	protease	A0A1B1IT64	uncultured_Mediterranean_phage	43.8	1.2e-10
WP_003812875.1|2903909_2904155_+	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	76.6	1.3e-20
WP_003820399.1|2904249_2904768_+	DUF192 domain-containing protein	NA	A0A1B1IUW8	uncultured_Mediterranean_phage	42.2	5.1e-14
WP_010931117.1|2904867_2906073_-	3-oxoadipyl-CoA thiolase	NA	NA	NA	NA	NA
WP_019247560.1|2906188_2907586_-	chloride channel protein	NA	NA	NA	NA	NA
WP_010931119.1|2907702_2908281_-	superoxide dismutase [Fe]	NA	NA	NA	NA	NA
WP_010931120.1|2908353_2909745_-	exodeoxyribonuclease VII large subunit	NA	A0A1V0SD82	Indivirus	32.0	1.4e-29
WP_005012067.1|2909912_2910863_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812889.1|2911143_2911764_+	MotA/TolQ/ExbB proton channel family protein	NA	NA	NA	NA	NA
WP_010931122.1|2911760_2912174_+	biopolymer transporter ExbD	NA	NA	NA	NA	NA
WP_010931123.1|2912170_2913214_+	tetraacyldisaccharide 4'-kinase	NA	NA	NA	NA	NA
WP_003812895.1|2913269_2913458_+	Trm112 family protein	NA	NA	NA	NA	NA
WP_010931124.1|2913467_2914232_+	3-deoxy-manno-octulosonate cytidylyltransferase	NA	NA	NA	NA	NA
WP_010931125.1|2914322_2914979_+	adenylate kinase	NA	NA	NA	NA	NA
WP_010931126.1|2915070_2915829_+	3-hydroxyacyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_010931127.1|2915854_2917456_+	murein biosynthesis integral membrane protein MurJ	NA	NA	NA	NA	NA
WP_010931128.1|2917656_2918661_+	FecR domain-containing protein	NA	NA	NA	NA	NA
WP_003812908.1|2918761_2919025_+	30S ribosomal protein S20	NA	NA	NA	NA	NA
WP_010931129.1|2919142_2919919_-	2-dehydro-3-deoxyglucarate aldolase	NA	NA	NA	NA	NA
WP_005012067.1|2920509_2921460_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931130.1|2923843_2924956_-	Ldh family oxidoreductase	NA	NA	NA	NA	NA
WP_005012808.1|2925012_2925963_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 24
NZ_CP010847	Bordetella pertussis strain H622 chromosome, complete genome	4107431	2956349	3000040	4107431	transposase	Planktothrix_phage(33.33%)	41	NA	NA
WP_005012067.1|2956349_2957300_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_162268686.1|2957317_2957467_+	hypothetical protein	NA	NA	NA	NA	NA
WP_023852715.1|2957420_2958317_-	inositol monophosphatase	NA	NA	NA	NA	NA
WP_003814547.1|2960594_2962820_+	glycoside hydrolase family 31 protein	NA	NA	NA	NA	NA
WP_003814544.1|2962984_2964073_+	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	36.4	8.7e-32
WP_019247918.1|2964029_2964683_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931144.1|2964730_2965528_+	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930176.1|2966059_2967010_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247277.1|2967084_2968239_+	iron-containing alcohol dehydrogenase	NA	NA	NA	NA	NA
WP_005012067.1|2968295_2969246_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814535.1|2969344_2969650_-	antibiotic biosynthesis monooxygenase	NA	NA	NA	NA	NA
WP_003820797.1|2969678_2970113_-	DUF126 domain-containing protein	NA	NA	NA	NA	NA
WP_010931147.1|2970114_2971359_-	DUF521 domain-containing protein	NA	NA	NA	NA	NA
WP_003820799.1|2971355_2972066_-	FadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_033446288.1|2972080_2972992_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931149.1|2973354_2973759_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247890.1|2973755_2974214_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_019247891.1|2974220_2975129_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_010931150.1|2975125_2975992_+	sugar ABC transporter permease	NA	NA	NA	NA	NA
WP_003814524.1|2975978_2976806_+	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
WP_003820806.1|2976816_2977944_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	32.3	1.2e-23
WP_023852748.1|2979021_2980260_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931152.1|2980301_2981564_+	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_010931153.1|2981570_2982323_+	DNA-binding protein	NA	NA	NA	NA	NA
WP_019248355.1|2982374_2982560_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003820813.1|2982835_2983300_+	redox-sensitive transcriptional activator SoxR	NA	NA	NA	NA	NA
WP_003820814.1|2983331_2983991_+	DNA-3-methyladenine glycosylase I	NA	NA	NA	NA	NA
WP_010931154.1|2984135_2986244_+	AsmA family protein	NA	NA	NA	NA	NA
WP_023852714.1|2986240_2987191_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931155.1|2987294_2987915_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931156.1|2988006_2988759_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_019248356.1|2989893_2991018_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247402.1|2991063_2991432_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|2991673_2992624_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247492.1|2993659_2994202_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023998107.1|2994399_2994570_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|2994587_2995538_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023997028.1|2995534_2996500_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003815281.1|2996569_2997406_+	3-methyl-2-oxobutanoate hydroxymethyltransferase	NA	A0A0P0BXC9	Ostreococcus_lucimarinus_virus	33.3	1.6e-33
WP_010931158.1|2997918_2999028_+	porin	NA	NA	NA	NA	NA
WP_005012067.1|2999089_3000040_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 26
NZ_CP010847	Bordetella pertussis strain H622 chromosome, complete genome	4107431	3382080	3435821	4107431	transposase	Staphylococcus_phage(33.33%)	48	NA	NA
WP_023995489.1|3382080_3383031_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931336.1|3383435_3384080_-	urease accessory protein UreG	NA	NA	NA	NA	NA
WP_019247677.1|3384104_3384689_-	urease accessory protein UreF	NA	NA	NA	NA	NA
WP_014905506.1|3384789_3385407_-	urease accessory protein UreE	NA	NA	NA	NA	NA
WP_010931337.1|3385409_3387125_-	urease subunit alpha	NA	NA	NA	NA	NA
WP_010931338.1|3387121_3387430_-	urease subunit beta	NA	NA	NA	NA	NA
WP_003814828.1|3387446_3388064_-	HupE/UreJ family protein	NA	NA	NA	NA	NA
WP_010931340.1|3388108_3388411_-	urease subunit gamma	NA	NA	NA	NA	NA
WP_003814832.1|3388511_3389366_-	urease accessory protein UreD	NA	NA	NA	NA	NA
WP_124740609.1|3389553_3389778_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929281.1|3389947_3390220_+	MerR family DNA-binding transcriptional regulator	NA	NA	NA	NA	NA
WP_010929282.1|3390637_3391045_-	GFA family protein	NA	NA	NA	NA	NA
WP_010931341.1|3391414_3392209_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010927102.1|3392309_3393545_+	methylaspartate ammonia-lyase	NA	NA	NA	NA	NA
WP_003814852.1|3393613_3394630_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931342.1|3394641_3396018_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_003814856.1|3396014_3397211_+	MFS transporter	NA	NA	NA	NA	NA
WP_003814858.1|3397207_3398746_-	SpoVR family protein	NA	NA	NA	NA	NA
WP_010931343.1|3398742_3400002_-	YeaH/YhbH family protein	NA	NA	NA	NA	NA
WP_005012067.1|3401942_3402893_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931344.1|3403659_3404754_-	CoA transferase	NA	NA	NA	NA	NA
WP_019247312.1|3404746_3406081_-	AMP-binding protein	NA	NA	NA	NA	NA
WP_003808193.1|3406034_3406718_-	TetR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003808195.1|3406743_3407907_-	acyl-CoA dehydrogenase family protein	NA	NA	NA	NA	NA
WP_004566224.1|3407903_3408905_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010931346.1|3408904_3409777_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010931347.1|3409773_3410523_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	27.8	1.9e-09
WP_010931348.1|3410519_3411311_-	ATP-binding cassette domain-containing protein	NA	A0A1M7XV31	Cedratvirus	29.4	1.7e-08
WP_010931349.1|3411307_3412447_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_047122778.1|3412722_3413508_+	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_014486103.1|3413541_3414324_+	crotonase/enoyl-CoA hydratase family protein	NA	NA	NA	NA	NA
WP_010931351.1|3414327_3414717_+	OB-fold domain-containing protein	NA	NA	NA	NA	NA
WP_010931352.1|3415856_3416720_+	MaoC family dehydratase N-terminal domain-containing protein	NA	NA	NA	NA	NA
WP_010931353.1|3416755_3417844_+	NAD(P)H-binding protein	NA	NA	NA	NA	NA
WP_010931070.1|3417840_3418791_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247959.1|3419144_3422123_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003818344.1|3423049_3423928_+	fatty acid desaturase	NA	NA	NA	NA	NA
WP_005013747.1|3425876_3426827_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931354.1|3426823_3427291_-	ribonuclease HI	NA	J9Q745	Salmonella_phage	50.7	5.6e-36
WP_010931355.1|3427333_3428104_-	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_010927090.1|3428124_3428925_+	hydroxyacylglutathione hydrolase	NA	NA	NA	NA	NA
WP_010931356.1|3428935_3430345_+	transglycosylase SLT domain-containing protein	NA	NA	NA	NA	NA
WP_003814739.1|3430439_3431225_+	enoyl-ACP reductase FabI	NA	NA	NA	NA	NA
WP_010931561.1|3431464_3432481_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003814742.1|3432588_3432981_-	OsmC family protein	NA	NA	NA	NA	NA
WP_010931357.1|3433118_3433799_+	tellurite resistance TerB family protein	NA	NA	NA	NA	NA
WP_023994844.1|3433803_3434775_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930179.1|3434870_3435821_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 27
NZ_CP010847	Bordetella pertussis strain H622 chromosome, complete genome	4107431	3441976	3501276	4107431	tRNA,transposase	Acinetobacter_phage(27.27%)	48	NA	NA
WP_003820957.1|3441976_3443740_+|tRNA	glutamine--tRNA ligase/YqeY domain fusion protein	tRNA	A0A222YZ70	Escherichia_phage	50.0	5.0e-162
WP_010931362.1|3443851_3444730_+	septum site-determining protein MinC	NA	NA	NA	NA	NA
WP_003814250.1|3444842_3445658_+	septum site-determining protein MinD	NA	NA	NA	NA	NA
WP_003814252.1|3445661_3445913_+	cell division topological specificity factor MinE	NA	NA	NA	NA	NA
WP_010929632.1|3445997_3447014_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003814254.1|3447344_3447566_-	glycine zipper 2TM domain-containing protein	NA	NA	NA	NA	NA
WP_019247693.1|3449926_3450844_-	DMT family transporter	NA	NA	NA	NA	NA
WP_019247692.1|3451341_3452550_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931365.1|3452629_3454201_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003814275.1|3454318_3455254_-	glycosyltransferase family 2 protein	NA	NA	NA	NA	NA
WP_003814277.1|3455442_3456387_+	LysR family transcriptional regulator	NA	A0A2P0ZL89	Lactobacillus_phage	23.2	8.4e-07
WP_003814283.1|3456954_3462672_+	excinuclease ABC subunit UvrA	NA	A0A1B1IVR3	uncultured_Mediterranean_phage	39.5	1.0e-195
WP_010931367.1|3462677_3463805_+	aminodeoxychorismate synthase component I	NA	S4VT78	Pandoravirus	37.8	3.8e-38
WP_003814287.1|3463860_3464487_+	aminotransferase class IV	NA	NA	NA	NA	NA
WP_010931363.1|3464758_3465775_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010927020.1|3465870_3466581_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010931368.1|3466577_3467567_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931369.1|3467662_3469294_+	AMP-binding protein	NA	NA	NA	NA	NA
WP_010931370.1|3469296_3470034_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247745.1|3470189_3471062_-|tRNA	tRNA threonylcarbamoyladenosine dehydratase	tRNA	NA	NA	NA	NA
WP_003814298.1|3471330_3472551_+	MFS transporter	NA	NA	NA	NA	NA
WP_003814300.1|3472547_3473207_+	gamma-glutamylcyclotransferase	NA	NA	NA	NA	NA
WP_003814302.1|3473278_3473911_+	pyridoxamine 5'-phosphate oxidase	NA	NA	NA	NA	NA
WP_010931372.1|3473940_3474459_+	flavin reductase family protein	NA	NA	NA	NA	NA
WP_010931373.1|3474469_3475579_+	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_003814312.1|3475625_3476480_+	formyltetrahydrofolate deformylase	NA	NA	NA	NA	NA
WP_010931374.1|3476481_3477384_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|3478606_3479557_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023997720.1|3481313_3482303_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247413.1|3482299_3482458_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931375.1|3482478_3483267_-	indole-3-glycerol phosphate synthase TrpC	NA	A0A0P0IR83	Acinetobacter_phage	53.0	5.1e-66
WP_003817833.1|3483263_3484295_-	anthranilate phosphoribosyltransferase	NA	A0A0N7IRD9	Acinetobacter_phage	42.7	7.4e-73
WP_003815390.1|3484313_3484877_-	aminodeoxychorismate/anthranilate synthase component II	NA	A0A0P0IKJ1	Acinetobacter_phage	62.1	1.1e-65
WP_010931376.1|3484932_3486453_-	anthranilate synthase component I	NA	S4VT78	Pandoravirus	32.1	9.0e-43
WP_010931377.1|3486716_3487421_-	phosphoglycolate phosphatase	NA	NA	NA	NA	NA
WP_003815384.1|3487428_3488166_-	ribulose-phosphate 3-epimerase	NA	NA	NA	NA	NA
WP_003815381.1|3488271_3488646_+	Co2+/Mg2+ efflux protein ApaG	NA	NA	NA	NA	NA
WP_003815379.1|3488688_3489978_+	murein transglycosylase A	NA	NA	NA	NA	NA
WP_010931378.1|3489974_3491144_+	UbiH/UbiF family hydroxylase	NA	NA	NA	NA	NA
WP_010931379.1|3491140_3491980_+	thiol:disulfide interchange protein DsbC	NA	NA	NA	NA	NA
WP_010931380.1|3492039_3492975_+	D-2-hydroxyacid dehydrogenase family protein	NA	A0A1J0F959	Only_Syngen_Nebraska_virus	27.7	6.4e-15
WP_005012067.1|3492987_3493938_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931381.1|3494036_3494999_-|tRNA	tRNA 2-thiocytidine(32) synthetase TtcA	tRNA	A0A0U2S5Z2	Escherichia_phage	64.5	4.6e-93
WP_003817821.1|3495030_3495390_-	dihydroneopterin aldolase	NA	NA	NA	NA	NA
WP_010931382.1|3495514_3496417_+	NAD(P)/FAD-dependent oxidoreductase	NA	G3MA85	Bacillus_virus	24.0	1.9e-08
WP_010931383.1|3496418_3498191_-	M61 family metallopeptidase	NA	NA	NA	NA	NA
WP_003815367.1|3498225_3499002_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_023852617.1|3500325_3501276_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 28
NZ_CP010847	Bordetella pertussis strain H622 chromosome, complete genome	4107431	3516214	3574287	4107431	tRNA,transposase	Planktothrix_phage(12.5%)	47	NA	NA
WP_005012808.1|3516214_3517165_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931392.1|3517293_3518427_-	M20 family metallopeptidase	NA	NA	NA	NA	NA
WP_010931393.1|3518470_3519376_-	hydrolase	NA	NA	NA	NA	NA
WP_023852622.1|3519378_3521079_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	32.7	1.0e-15
WP_010931394.1|3521075_3521996_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_003817805.1|3522003_3522981_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931395.1|3523039_3524074_-	succinylglutamate desuccinylase/aspartoacylase family protein	NA	NA	NA	NA	NA
WP_003815317.1|3526048_3526285_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023995266.1|3526411_3527275_-	NAD(P)H-hydrate dehydratase	NA	NA	NA	NA	NA
WP_003815315.1|3527363_3528185_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003815313.1|3528264_3529002_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010931397.1|3528998_3529991_-	nitronate monooxygenase	NA	NA	NA	NA	NA
WP_003817794.1|3530104_3530767_+	TetR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931399.1|3530811_3531960_+	acyl-CoA dehydrogenase family protein	NA	NA	NA	NA	NA
WP_010931400.1|3534283_3535234_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014486105.1|3535574_3536525_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|3536623_3537574_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_029443756.1|3537870_3538368_+	cupredoxin family protein	NA	NA	NA	NA	NA
WP_010931403.1|3538410_3540186_+	copper resistance system multicopper oxidase	NA	NA	NA	NA	NA
WP_010931404.1|3540193_3541060_+	copper resistance protein B	NA	NA	NA	NA	NA
WP_019249391.1|3541066_3541801_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010931406.1|3542970_3543765_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003815296.1|3544054_3544645_+	cysteine dioxygenase	NA	NA	NA	NA	NA
WP_010931407.1|3544678_3546007_-	amidase	NA	NA	NA	NA	NA
WP_010931408.1|3546081_3547227_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_014905478.1|3547338_3548337_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_033446233.1|3548299_3548734_+	carbon monoxide dehydrogenase	NA	NA	NA	NA	NA
WP_010929974.1|3550250_3551135_+	DMT family transporter	NA	NA	NA	NA	NA
WP_010929973.1|3551131_3552337_-	cardiolipin synthase ClsB	NA	NA	NA	NA	NA
WP_010929972.1|3552333_3553194_-	endonuclease/exonuclease/phosphatase family protein	NA	NA	NA	NA	NA
WP_003807038.1|3553306_3555097_-|tRNA	aspartate--tRNA ligase	tRNA	A0A1V0SAC0	Catovirus	25.5	6.5e-08
WP_003807035.1|3555137_3555803_-	DUF502 domain-containing protein	NA	A0A2I7S9X1	Vibrio_phage	28.4	6.7e-11
WP_010929971.1|3555803_3556112_-	FmdB family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929970.1|3556277_3557564_-	putative Na+/H+ antiporter	NA	NA	NA	NA	NA
WP_010929969.1|3558997_3559948_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929968.1|3561899_3563114_-	formate-dependent phosphoribosylglycinamide formyltransferase	NA	NA	NA	NA	NA
WP_003815171.1|3563219_3564209_+	KpsF/GutQ family sugar-phosphate isomerase	NA	A0A2P0VNK5	Tetraselmis_virus	37.7	4.3e-38
WP_003815172.1|3564205_3564814_+	HAD-IIIA family hydrolase	NA	E3T535	Cafeteria_roenbergensis_virus	26.1	5.2e-10
WP_010929967.1|3564826_3565456_+	LPS export ABC transporter periplasmic protein LptC	NA	NA	NA	NA	NA
WP_003815175.1|3565452_3566073_+	lipopolysaccharide transport periplasmic protein LptA	NA	NA	NA	NA	NA
WP_003815177.1|3566104_3566896_+	LPS export ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	27.4	9.5e-20
WP_010929966.1|3567747_3568203_+	PTS sugar transporter subunit IIA	NA	NA	NA	NA	NA
WP_010929965.1|3568221_3569148_+	HPr kinase/phosphorylase	NA	NA	NA	NA	NA
WP_010929964.1|3569201_3570488_-	cytochrome c	NA	NA	NA	NA	NA
WP_003815183.1|3571418_3572291_+	RNase adapter RapZ	NA	A0A1P8D5W0	Corynebacterium_phage	34.5	2.4e-08
WP_010929963.1|3572287_3573238_+	septal ring lytic transglycosylase RlpA family protein	NA	F5B3X9	Synechococcus_phage	47.2	6.9e-17
WP_005012067.1|3573336_3574287_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 30
NZ_CP010847	Bordetella pertussis strain H622 chromosome, complete genome	4107431	4029602	4083034	4107431	transposase	Planktothrix_phage(40.0%)	46	NA	NA
WP_010931661.1|4029602_4030553_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931662.1|4030722_4031949_+	bifunctional glutamate N-acetyltransferase/amino-acid acetyltransferase ArgJ	NA	NA	NA	NA	NA
WP_010931663.1|4032148_4033015_+	ATP-binding protein	NA	NA	NA	NA	NA
WP_003815027.1|4033007_4033970_+	Nudix family hydrolase	NA	A0A221LFJ1	Barns_Ness_breadcrumb_sponge_sobemo-like_virus	53.4	1.9e-06
WP_010927663.1|4034070_4035021_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|4035119_4036070_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929577.1|4036168_4037119_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994937.1|4037115_4038609_-	efflux transporter outer membrane subunit	NA	NA	NA	NA	NA
WP_003815032.1|4038605_4041713_-	multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_010931665.1|4041709_4044778_-	MdtB/MuxB family multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_010931666.1|4044774_4046025_-	MdtA/MuxA family multidrug efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
WP_003815038.1|4046205_4046967_-	cell division protein ZapD	NA	NA	NA	NA	NA
WP_019247320.1|4046999_4047650_-	dephospho-CoA kinase	NA	NA	NA	NA	NA
WP_003820519.1|4047652_4048492_-	prepilin peptidase	NA	NA	NA	NA	NA
WP_003815047.1|4048732_4049476_+	copper resistance protein NlpE N-terminal domain-containing protein	NA	NA	NA	NA	NA
WP_003815049.1|4049558_4049906_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003815051.1|4050003_4050846_-	pantoate--beta-alanine ligase	NA	NA	NA	NA	NA
WP_003815053.1|4050890_4051778_-	segregation/condensation protein A	NA	NA	NA	NA	NA
WP_003815055.1|4051804_4051993_-	DUF3460 family protein	NA	NA	NA	NA	NA
WP_010931669.1|4052090_4053548_+	DHA2 family efflux MFS transporter permease subunit	NA	NA	NA	NA	NA
WP_010931670.1|4053534_4055061_+	glycerol kinase GlpK	NA	NA	NA	NA	NA
WP_003815061.1|4055079_4055547_-	CopD family protein	NA	NA	NA	NA	NA
WP_010931671.1|4055546_4056569_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_169507388.1|4056689_4057409_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	39.9	4.7e-34
WP_003815066.1|4057484_4058585_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003815068.1|4058586_4059777_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003815070.1|4059896_4060913_-	amino acid ABC transporter substrate-binding protein	NA	A0A1B1IT51	uncultured_Mediterranean_phage	42.1	1.0e-71
WP_003815073.1|4061231_4061903_+	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	38.2	9.5e-29
WP_010927126.1|4061899_4062808_+	FtsX-like permease family protein	NA	NA	NA	NA	NA
WP_010931672.1|4063019_4063667_+	chemoreceptor glutamine deamidase CheD	NA	NA	NA	NA	NA
WP_010931673.1|4067518_4068595_+	A/G-specific adenine glycosylase	NA	NA	NA	NA	NA
WP_003815084.1|4068605_4069415_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003815086.1|4069504_4070278_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_023853189.1|4070278_4070443_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930363.1|4070460_4071411_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_077274100.1|4071299_4072322_+	CoA transferase	NA	NA	NA	NA	NA
WP_010931674.1|4072311_4073466_+	CoA transferase	NA	NA	NA	NA	NA
WP_010931675.1|4073505_4074918_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_019247370.1|4075042_4075909_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931677.1|4075910_4076735_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_023853488.1|4076731_4077493_+	nitroreductase	NA	M1I6Q5	Acanthocystis_turfacea_Chlorella_virus	31.0	2.0e-19
WP_003808010.1|4077573_4078260_-	TetR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931679.1|4078433_4079441_+	hydroxymethylglutaryl-CoA lyase	NA	NA	NA	NA	NA
WP_003819309.1|4079437_4080217_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010931680.1|4080274_4081537_+	CoA transferase	NA	NA	NA	NA	NA
WP_010929591.1|4082083_4083034_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
