The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP010843	Bordetella pertussis strain H542 chromosome, complete genome	4103349	27282	70036	4103349	transposase,tRNA	Synechococcus_phage(50.0%)	41	NA	NA
WP_010930363.1|27282_28233_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023995007.1|28314_28650_-	CoA transferase	NA	NA	NA	NA	NA
WP_010929578.1|28674_29109_-	OB-fold domain-containing protein	NA	NA	NA	NA	NA
WP_019247164.1|29141_30359_-	thiolase family protein	NA	NA	NA	NA	NA
WP_010929580.1|30364_30862_-	MaoC family dehydratase	NA	NA	NA	NA	NA
WP_019247165.1|31069_32005_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929582.1|32214_33006_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010929583.1|33048_34470_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_010929584.1|34625_35576_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814398.1|35572_36763_-	MFS transporter	NA	NA	NA	NA	NA
WP_010929585.1|37012_37924_+|tRNA	glycine--tRNA ligase subunit alpha	tRNA	NA	NA	NA	NA
WP_010929586.1|37925_40064_+|tRNA	glycine--tRNA ligase subunit beta	tRNA	NA	NA	NA	NA
WP_003814404.1|40060_40600_+	D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase	NA	NA	NA	NA	NA
WP_003814405.1|40603_41332_+	1-acyl-sn-glycerol-3-phosphate acyltransferase	NA	NA	NA	NA	NA
WP_010929587.1|41318_42212_+	M48 family metallopeptidase	NA	NA	NA	NA	NA
WP_019247766.1|42282_42678_+	lactoylglutathione lyase	NA	NA	NA	NA	NA
WP_003814412.1|42687_43218_+	peptide deformylase	NA	E3SLL2	Synechococcus_phage	35.4	3.7e-12
WP_010929588.1|43663_44614_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929589.1|45200_45749_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815265.1|45720_45957_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003815255.1|46084_46978_+	AEC family transporter	NA	NA	NA	NA	NA
WP_010929590.1|48147_49395_+	homoserine O-acetyltransferase	NA	NA	NA	NA	NA
WP_003817748.1|49391_50006_+	methionine biosynthesis protein MetW	NA	NA	NA	NA	NA
WP_010929591.1|50141_51092_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_029443813.1|51134_52391_+	muropeptide transporter	NA	NA	NA	NA	NA
WP_010929592.1|53622_54357_-	aspartate/glutamate racemase family protein	NA	NA	NA	NA	NA
WP_019247224.1|54362_54953_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.6	3.2e-20
WP_003817737.1|54977_55667_-	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_023852650.1|55663_56425_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010929594.1|56504_57404_-	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_005012808.1|57497_58448_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929595.1|59248_60475_-	type II toxin-antitoxin system HipA family toxin	NA	NA	NA	NA	NA
WP_047122776.1|60474_60888_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010929597.1|61077_62019_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019248755.1|62442_63417_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929599.1|63473_64055_-	DJ-1/PfpI family protein	NA	NA	NA	NA	NA
WP_010929600.1|64067_64370_-	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA	NA
WP_029443770.1|64488_65547_-	2Fe-2S iron-sulfur cluster binding domain-containing protein	NA	NA	NA	NA	NA
WP_019247832.1|65581_66853_-	TRAP transporter large permease	NA	NA	NA	NA	NA
WP_010929603.1|67482_68664_-	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929584.1|69085_70036_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 2
NZ_CP010843	Bordetella pertussis strain H542 chromosome, complete genome	4103349	231617	305961	4103349	transposase	uncultured_Mediterranean_phage(15.38%)	54	NA	NA
WP_010929591.1|231617_232568_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931563.1|232564_233755_-	voltage-gated potassium channel protein	NA	NA	NA	NA	NA
WP_010931562.1|233876_234641_-	phytanoyl-CoA dioxygenase family protein	NA	NA	NA	NA	NA
WP_003807735.1|234727_235831_-	AI-2E family transporter	NA	NA	NA	NA	NA
WP_010931561.1|236022_237039_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003815102.1|237320_237809_+	D-glycero-beta-D-manno-heptose 1-phosphate adenylyltransferase	NA	A0A1B1IUK5	uncultured_Mediterranean_phage	34.1	1.6e-17
WP_003817656.1|239152_239833_-	protein-L-isoaspartate O-methyltransferase	NA	A0A1B1IU40	uncultured_Mediterranean_phage	34.8	3.5e-15
WP_010931560.1|239894_240746_-	bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase	NA	NA	NA	NA	NA
WP_010931559.1|240742_241540_-	thiazole synthase	NA	NA	NA	NA	NA
WP_010931558.1|241643_242537_-	cobalamin-binding protein	NA	NA	NA	NA	NA
WP_010931557.1|242548_244438_-	TonB-dependent receptor	NA	A0A0P0I887	Acinetobacter_phage	30.8	7.6e-07
WP_010931556.1|244774_248548_+	methionine synthase	NA	A0A140XBC7	Dickeya_phage	50.8	8.6e-10
WP_010929591.1|248544_249495_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929826.1|249803_250496_-	3,4-dihydroxy-2-butanone-4-phosphate synthase	NA	A0A2H4PQS2	Staphylococcus_phage	41.6	6.3e-36
WP_003818232.1|250869_251370_-	SET domain-containing protein-lysine N-methyltransferase	NA	NA	NA	NA	NA
WP_023853391.1|251476_252397_+	bestrophin	NA	NA	NA	NA	NA
WP_010929823.1|252413_252890_-	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929822.1|252983_254834_+	biosynthetic-type acetolactate synthase large subunit	NA	E4WLQ6	Ostreococcus_tauri_virus	30.4	2.2e-59
WP_010929821.1|254889_255648_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010929820.1|255675_257109_-	aldehyde dehydrogenase family protein	NA	NA	NA	NA	NA
WP_003818225.1|257182_257962_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010929819.1|257974_258808_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_020699616.1|258816_259587_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	33.9	8.1e-24
WP_010929818.1|259586_260651_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929817.1|260802_263430_-	DNA topoisomerase III	NA	A0A0G2YA05	Acanthamoeba_polyphaga_mimivirus	25.4	6.1e-23
WP_010929816.1|263493_266115_+	GDYXXLXY domain-containing protein	NA	NA	NA	NA	NA
WP_003815964.1|267042_267501_-	DUF494 domain-containing protein	NA	NA	NA	NA	NA
WP_010929815.1|267779_270023_-	TonB-dependent hemoglobin/transferrin/lactoferrin family receptor	NA	NA	NA	NA	NA
WP_010929814.1|270219_272244_-	TRAP transporter permease	NA	NA	NA	NA	NA
WP_010929813.1|272367_273330_-	TAXI family TRAP transporter solute-binding subunit	NA	NA	NA	NA	NA
WP_010929812.1|273541_274681_+	DSD1 family PLP-dependent enzyme	NA	NA	NA	NA	NA
WP_010929811.1|274703_275669_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_004565905.1|275864_277055_+	acetylornithine transaminase	NA	A0A1V0SKB7	Klosneuvirus	26.7	4.4e-21
WP_003815955.1|277068_277314_+	DUF1653 domain-containing protein	NA	NA	NA	NA	NA
WP_010929810.1|277342_279364_-	acetyl/propionyl/methylcrotonyl-CoA carboxylase subunit alpha	NA	NA	NA	NA	NA
WP_003815953.1|279410_281018_-	methylcrotonoyl-CoA carboxylase	NA	A0A1B2ITV7	Pike_perch_iridovirus	57.3	5.4e-22
WP_010929808.1|281118_282288_-	acetyl-CoA C-acyltransferase	NA	NA	NA	NA	NA
WP_005012067.1|285169_286120_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929807.1|286143_287202_-	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
WP_003818201.1|287276_287651_+	MerR family DNA-binding transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|288205_289156_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929833.1|290712_291558_-	AraC family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929834.1|291645_292809_-	alpha-hydroxy-acid oxidizing protein	NA	NA	NA	NA	NA
WP_010929835.1|293227_294199_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929836.1|294237_295665_-	amidase	NA	NA	NA	NA	NA
WP_023853625.1|295784_296576_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010929838.1|296694_299148_-	DNA topoisomerase (ATP-hydrolyzing) subunit B	NA	G3M9Z3	Bacillus_virus	34.8	2.3e-112
WP_010929839.1|299242_300352_-	DNA polymerase III subunit beta	NA	B4UTW9	Rhizobium_phage	32.6	1.2e-41
WP_010929554.1|300354_301764_-	chromosomal replication initiator protein DnaA	NA	NA	NA	NA	NA
WP_003816025.1|302169_302304_+	50S ribosomal protein L34	NA	NA	NA	NA	NA
WP_003816026.1|302399_302771_+	ribonuclease P protein component	NA	NA	NA	NA	NA
WP_003816027.1|302767_303040_+	membrane protein insertion efficiency factor YidD	NA	A0A2H4PQM5	Staphylococcus_phage	52.2	7.0e-15
WP_010927254.1|303088_304780_+	membrane protein insertase YidC	NA	NA	NA	NA	NA
WP_005012067.1|305010_305961_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 4
NZ_CP010843	Bordetella pertussis strain H542 chromosome, complete genome	4103349	488324	606219	4103349	transposase,tRNA	Acinetobacter_phage(22.22%)	102	NA	NA
WP_005012067.1|488324_489275_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929956.1|489373_490324_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929957.1|491046_492321_+|tRNA	glutamyl-tRNA reductase	tRNA	NA	NA	NA	NA
WP_003807618.1|492407_493490_+	peptide chain release factor 1	NA	A0A0S4KWG0	Pseudomonas_phage	40.7	3.3e-07
WP_010929958.1|493500_494313_+	peptide chain release factor N(5)-glutamine methyltransferase	NA	NA	NA	NA	NA
WP_010929959.1|494349_494676_+	Grx4 family monothiol glutaredoxin	NA	NA	NA	NA	NA
WP_003807624.1|494680_495241_+	UbiX family flavin prenyltransferase	NA	NA	NA	NA	NA
WP_003819054.1|495481_496474_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929960.1|496492_497488_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_023853194.1|497503_498880_+	FAD binding domain-containing protein	NA	A0A0P0IVM8	Acinetobacter_phage	37.3	2.4e-18
WP_010929962.1|498872_501254_+	xanthine dehydrogenase family protein molybdopterin-binding subunit	NA	NA	NA	NA	NA
WP_019247263.1|501270_501660_+	SRPBCC family protein	NA	NA	NA	NA	NA
WP_020699695.1|501786_502017_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|502121_503072_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929963.1|503170_504121_-	septal ring lytic transglycosylase RlpA family protein	NA	F5B3X9	Synechococcus_phage	47.2	6.9e-17
WP_003815183.1|504117_504990_-	RNase adapter RapZ	NA	A0A1P8D5W0	Corynebacterium_phage	34.5	2.4e-08
WP_010929964.1|505920_507207_+	cytochrome c	NA	NA	NA	NA	NA
WP_010929965.1|507260_508187_-	HPr kinase/phosphorylase	NA	NA	NA	NA	NA
WP_010929966.1|508205_508661_-	PTS sugar transporter subunit IIA	NA	NA	NA	NA	NA
WP_003815177.1|509512_510304_-	LPS export ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	27.4	9.5e-20
WP_003815175.1|510335_510956_-	lipopolysaccharide transport periplasmic protein LptA	NA	NA	NA	NA	NA
WP_010929967.1|510952_511582_-	LPS export ABC transporter periplasmic protein LptC	NA	NA	NA	NA	NA
WP_003815172.1|511594_512203_-	HAD-IIIA family hydrolase	NA	E3T535	Cafeteria_roenbergensis_virus	26.1	5.2e-10
WP_003815171.1|512199_513189_-	KpsF/GutQ family sugar-phosphate isomerase	NA	A0A2P0VNK5	Tetraselmis_virus	37.7	4.3e-38
WP_010929968.1|513294_514509_+	formate-dependent phosphoribosylglycinamide formyltransferase	NA	NA	NA	NA	NA
WP_010929969.1|516460_517411_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929970.1|518844_520131_+	putative Na+/H+ antiporter	NA	NA	NA	NA	NA
WP_010929971.1|520296_520605_+	FmdB family transcriptional regulator	NA	NA	NA	NA	NA
WP_003807035.1|520605_521271_+	DUF502 domain-containing protein	NA	A0A2I7S9X1	Vibrio_phage	28.4	6.7e-11
WP_003807038.1|521311_523102_+|tRNA	aspartate--tRNA ligase	tRNA	A0A1V0SAC0	Catovirus	25.5	6.5e-08
WP_010929972.1|523214_524075_+	endonuclease/exonuclease/phosphatase family protein	NA	NA	NA	NA	NA
WP_010929973.1|524071_525277_+	cardiolipin synthase ClsB	NA	NA	NA	NA	NA
WP_010929974.1|525273_526158_-	DMT family transporter	NA	NA	NA	NA	NA
WP_033446233.1|527674_528109_-	carbon monoxide dehydrogenase	NA	NA	NA	NA	NA
WP_014905478.1|528071_529070_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931408.1|529181_530327_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931407.1|530401_531730_+	amidase	NA	NA	NA	NA	NA
WP_003815296.1|531763_532354_-	cysteine dioxygenase	NA	NA	NA	NA	NA
WP_010931406.1|532643_533438_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019249391.1|534607_535342_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010931404.1|535348_536215_-	copper resistance protein B	NA	NA	NA	NA	NA
WP_010931403.1|536222_537998_-	copper resistance system multicopper oxidase	NA	NA	NA	NA	NA
WP_029443756.1|538040_538538_-	cupredoxin family protein	NA	NA	NA	NA	NA
WP_005013747.1|538834_539785_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014486105.1|539883_540834_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931400.1|541174_542125_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931399.1|544448_545597_-	acyl-CoA dehydrogenase family protein	NA	NA	NA	NA	NA
WP_003817794.1|545641_546304_-	TetR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931397.1|546417_547410_+	nitronate monooxygenase	NA	NA	NA	NA	NA
WP_003815313.1|547406_548144_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003815315.1|548223_549045_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010931396.1|549133_549997_+	NAD(P)H-hydrate dehydratase	NA	NA	NA	NA	NA
WP_003815317.1|550123_550360_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931395.1|552334_553369_+	succinylglutamate desuccinylase/aspartoacylase family protein	NA	NA	NA	NA	NA
WP_003817805.1|553427_554405_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931394.1|554412_555333_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_023852622.1|555329_557030_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	32.7	1.0e-15
WP_010931393.1|557032_557938_+	hydrolase	NA	NA	NA	NA	NA
WP_010931392.1|557981_559115_+	M20 family metallopeptidase	NA	NA	NA	NA	NA
WP_005012808.1|559243_560194_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931391.1|560292_562362_-	UvrD-helicase domain-containing protein	NA	A7KV33	Bacillus_phage	37.3	2.6e-101
WP_019247688.1|562404_564507_-	primosomal protein N'	NA	NA	NA	NA	NA
WP_010931389.1|564813_565890_-	uroporphyrinogen decarboxylase	NA	NA	NA	NA	NA
WP_010931388.1|565965_566850_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003815341.1|567032_567455_-	F0F1 ATP synthase subunit epsilon	NA	NA	NA	NA	NA
WP_010931387.1|567464_568865_-	F0F1 ATP synthase subunit beta	NA	NA	NA	NA	NA
WP_003817813.1|568907_569813_-	F0F1 ATP synthase subunit gamma	NA	NA	NA	NA	NA
WP_010931386.1|569911_571453_-	F0F1 ATP synthase subunit alpha	NA	NA	NA	NA	NA
WP_003815348.1|571487_572027_-	F0F1 ATP synthase subunit delta	NA	NA	NA	NA	NA
WP_010931385.1|572039_572510_-	F0F1 ATP synthase subunit B	NA	NA	NA	NA	NA
WP_003815363.1|572647_572890_-	F0F1 ATP synthase subunit C	NA	NA	NA	NA	NA
WP_003815364.1|573006_573888_-	F0F1 ATP synthase subunit A	NA	NA	NA	NA	NA
WP_003815365.1|573960_574281_-	ATP synthase subunit I	NA	NA	NA	NA	NA
WP_023852617.1|575132_576083_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003815367.1|577406_578183_-	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_010931383.1|578217_579990_+	M61 family metallopeptidase	NA	NA	NA	NA	NA
WP_010931382.1|579991_580894_-	NAD(P)/FAD-dependent oxidoreductase	NA	G3MA85	Bacillus_virus	24.0	1.9e-08
WP_003817821.1|581018_581378_+	dihydroneopterin aldolase	NA	NA	NA	NA	NA
WP_010931381.1|581409_582372_+|tRNA	tRNA 2-thiocytidine(32) synthetase TtcA	tRNA	A0A0U2S5Z2	Escherichia_phage	64.5	4.6e-93
WP_005012067.1|582470_583421_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931380.1|583433_584369_-	D-2-hydroxyacid dehydrogenase family protein	NA	A0A1J0F959	Only_Syngen_Nebraska_virus	27.7	6.4e-15
WP_010931379.1|584428_585268_-	thiol:disulfide interchange protein DsbC	NA	NA	NA	NA	NA
WP_010931378.1|585264_586434_-	UbiH/UbiF family hydroxylase	NA	NA	NA	NA	NA
WP_003815379.1|586430_587720_-	murein transglycosylase A	NA	NA	NA	NA	NA
WP_003815381.1|587762_588137_-	Co2+/Mg2+ efflux protein ApaG	NA	NA	NA	NA	NA
WP_003815384.1|588242_588980_+	ribulose-phosphate 3-epimerase	NA	NA	NA	NA	NA
WP_010931377.1|588987_589692_+	phosphoglycolate phosphatase	NA	NA	NA	NA	NA
WP_010931376.1|589955_591476_+	anthranilate synthase component I	NA	S4VT78	Pandoravirus	32.1	9.0e-43
WP_003815390.1|591531_592095_+	aminodeoxychorismate/anthranilate synthase component II	NA	A0A0P0IKJ1	Acinetobacter_phage	62.1	1.1e-65
WP_003817833.1|592113_593145_+	anthranilate phosphoribosyltransferase	NA	A0A0N7IRD9	Acinetobacter_phage	42.7	7.4e-73
WP_010931375.1|593141_593930_+	indole-3-glycerol phosphate synthase TrpC	NA	A0A0P0IR83	Acinetobacter_phage	53.0	5.1e-66
WP_019247413.1|593950_594109_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023997720.1|594105_595095_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|596851_597802_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931374.1|599024_599927_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814312.1|599928_600783_-	formyltetrahydrofolate deformylase	NA	NA	NA	NA	NA
WP_010931373.1|600829_601939_-	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010931372.1|601949_602468_-	flavin reductase family protein	NA	NA	NA	NA	NA
WP_003814302.1|602497_603130_-	pyridoxamine 5'-phosphate oxidase	NA	NA	NA	NA	NA
WP_003814300.1|603201_603861_-	gamma-glutamylcyclotransferase	NA	NA	NA	NA	NA
WP_003814298.1|603857_605078_-	MFS transporter	NA	NA	NA	NA	NA
WP_019247745.1|605346_606219_+|tRNA	tRNA threonylcarbamoyladenosine dehydratase	tRNA	NA	NA	NA	NA
>prophage 5
NZ_CP010843	Bordetella pertussis strain H542 chromosome, complete genome	4103349	610633	674466	4103349	transposase,tRNA	Pandoravirus(12.5%)	47	NA	NA
WP_010931363.1|610633_611650_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003814287.1|611921_612548_-	aminotransferase class IV	NA	NA	NA	NA	NA
WP_010931367.1|612603_613731_-	aminodeoxychorismate synthase component I	NA	S4VT78	Pandoravirus	37.8	3.8e-38
WP_003814283.1|613736_619454_-	excinuclease ABC subunit UvrA	NA	A0A1B1IVR3	uncultured_Mediterranean_phage	39.5	1.0e-195
WP_003814277.1|620021_620966_-	LysR family transcriptional regulator	NA	A0A2P0ZL89	Lactobacillus_phage	23.2	8.4e-07
WP_003814275.1|621154_622090_+	glycosyltransferase family 2 protein	NA	NA	NA	NA	NA
WP_010931365.1|622207_623779_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019247692.1|623858_625067_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_019247693.1|625564_626482_+	DMT family transporter	NA	NA	NA	NA	NA
WP_003814254.1|628842_629064_+	glycine zipper 2TM domain-containing protein	NA	NA	NA	NA	NA
WP_010929632.1|629394_630411_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003814252.1|630495_630747_-	cell division topological specificity factor MinE	NA	NA	NA	NA	NA
WP_003814250.1|630750_631566_-	septum site-determining protein MinD	NA	NA	NA	NA	NA
WP_010931362.1|631678_632557_-	septum site-determining protein MinC	NA	NA	NA	NA	NA
WP_003820957.1|632668_634432_-|tRNA	glutamine--tRNA ligase/YqeY domain fusion protein	tRNA	A0A222YZ70	Escherichia_phage	50.0	5.0e-162
WP_010931361.1|634547_635888_+	cytochrome ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
WP_010927010.1|636957_638382_-	HAMP domain-containing protein	NA	NA	NA	NA	NA
WP_003814239.1|638381_639083_-	response regulator	NA	W8CYM9	Bacillus_phage	36.6	5.6e-32
WP_010930179.1|640587_641538_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994844.1|641633_642605_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931357.1|642609_643290_-	tellurite resistance TerB family protein	NA	NA	NA	NA	NA
WP_003814742.1|643427_643820_+	OsmC family protein	NA	NA	NA	NA	NA
WP_010931561.1|643927_644944_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003814739.1|645183_645969_-	enoyl-ACP reductase FabI	NA	NA	NA	NA	NA
WP_010931356.1|646063_647473_-	transglycosylase SLT domain-containing protein	NA	NA	NA	NA	NA
WP_010927090.1|647483_648284_-	hydroxyacylglutathione hydrolase	NA	NA	NA	NA	NA
WP_010931355.1|648304_649075_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_010931354.1|649117_649585_+	ribonuclease HI	NA	J9Q745	Salmonella_phage	50.7	5.6e-36
WP_005013747.1|649581_650532_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003818344.1|652480_653359_-	fatty acid desaturase	NA	NA	NA	NA	NA
WP_019247959.1|654285_657264_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931070.1|657617_658568_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931353.1|658564_659653_-	NAD(P)H-binding protein	NA	NA	NA	NA	NA
WP_010931352.1|659688_660552_-	MaoC family dehydratase N-terminal domain-containing protein	NA	NA	NA	NA	NA
WP_010931351.1|661691_662081_-	OB-fold domain-containing protein	NA	NA	NA	NA	NA
WP_014486103.1|662084_662867_-	crotonase/enoyl-CoA hydratase family protein	NA	NA	NA	NA	NA
WP_047122778.1|662900_663686_-	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010931349.1|663961_665101_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931348.1|665097_665889_+	ATP-binding cassette domain-containing protein	NA	A0A1M7XV31	Cedratvirus	29.4	1.7e-08
WP_010931347.1|665885_666635_+	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	27.8	1.9e-09
WP_010931346.1|666631_667504_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_004566224.1|667503_668505_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003808195.1|668501_669665_+	acyl-CoA dehydrogenase family protein	NA	NA	NA	NA	NA
WP_003808193.1|669690_670374_+	TetR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247312.1|670327_671662_+	AMP-binding protein	NA	NA	NA	NA	NA
WP_010931344.1|671654_672749_+	CoA transferase	NA	NA	NA	NA	NA
WP_005012067.1|673515_674466_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 6
NZ_CP010843	Bordetella pertussis strain H542 chromosome, complete genome	4103349	693377	770686	4103349	transposase,tRNA,protease,integrase	Bacillus_phage(20.0%)	57	740514:740532	760402:760420
WP_023995489.1|693377_694328_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931335.1|694426_695902_-	M81 family metallopeptidase	NA	NA	NA	NA	NA
WP_010931334.1|697489_698377_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931333.1|698379_699321_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931332.1|699366_700932_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931331.1|702709_704035_-	aspartate aminotransferase family protein	NA	NA	NA	NA	NA
WP_010931330.1|704217_705675_+	PLP-dependent aminotransferase family protein	NA	A0A1X9I5H2	Streptococcus_phage	21.1	7.6e-15
WP_003816386.1|705638_706136_-	dihydrofolate reductase	NA	A0A140HLG8	Bacillus_phage	38.9	3.0e-24
WP_010931328.1|706166_707138_-	thymidylate synthase	NA	J7KKN7	Erwinia_phage	33.3	4.8e-50
WP_003808444.1|707190_707628_-	OsmC family protein	NA	NA	NA	NA	NA
WP_010931327.1|707751_708420_+	2-polyprenyl-3-methyl-6-methoxy-1,4-benzoquinone monooxygenase	NA	NA	NA	NA	NA
WP_003808448.1|709148_710252_+	glycosyltransferase family 4 protein	NA	NA	NA	NA	NA
WP_171024626.1|710354_711632_+	Vi polysaccharide biosynthesis UDP-N-acetylglucosamine C-6 dehydrogenase TviB	NA	NA	NA	NA	NA
WP_010930472.1|711643_712669_+	Vi polysaccharide biosynthesis UDP-N-acetylglucosaminuronic acid C-4 epimerase TviC	NA	A0A2K9L4U8	Tupanvirus	44.2	4.7e-72
WP_010931325.1|712670_714041_+	polysaccharide biosynthesis C-terminal domain-containing protein	NA	NA	NA	NA	NA
WP_010931324.1|714041_715178_+	glycosyltransferase family 4 protein	NA	NA	NA	NA	NA
WP_010931323.1|715224_717150_+	asparagine synthase (glutamine-hydrolyzing)	NA	A0A2K9R7N5	Dishui_lake_phycodnavirus	29.0	1.0e-27
WP_010931322.1|717146_718268_+	glycosyltransferase family 4 protein	NA	NA	NA	NA	NA
WP_010931321.1|718264_719419_+	glycosyltransferase	NA	NA	NA	NA	NA
WP_010931320.1|719415_720546_+	glycosyltransferase family 4 protein	NA	NA	NA	NA	NA
WP_003808462.1|720553_722119_-	glucose-6-phosphate isomerase	NA	NA	NA	NA	NA
WP_010931319.1|722125_723508_-	phosphomannomutase/phosphoglucomutase	NA	A0A127AWJ1	Bacillus_phage	31.6	6.2e-51
WP_003808465.1|723786_724398_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931317.1|724489_725905_+	FAD-binding oxidoreductase	NA	NA	NA	NA	NA
WP_003818936.1|725922_726633_+	response regulator transcription factor	NA	NA	NA	NA	NA
WP_010931316.1|726629_727952_+	HAMP domain-containing histidine kinase	NA	NA	NA	NA	NA
WP_010931315.1|728031_729993_+	sulfatase-like hydrolase/transferase	NA	NA	NA	NA	NA
WP_003818932.1|730118_731432_-	fumarylacetoacetase	NA	NA	NA	NA	NA
WP_003818930.1|731540_732839_-	homogentisate 1,2-dioxygenase	NA	NA	NA	NA	NA
WP_010931314.1|733021_733930_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003808487.1|733939_734149_-	DUF2783 domain-containing protein	NA	NA	NA	NA	NA
WP_003808489.1|734160_735840_-	FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010931313.1|735941_736895_-	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
WP_010925978.1|736985_737813_-	bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase	NA	NA	NA	NA	NA
WP_010931312.1|737811_739698_+	tetratricopeptide repeat protein	NA	NA	NA	NA	NA
WP_003818921.1|739694_740294_+	lipoprotein localization protein LolB	NA	NA	NA	NA	NA
WP_010931311.1|740342_741242_+	4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase	NA	NA	NA	NA	NA
740514:740532	attL	CTGCCTGGCGTGGCCGAGT	NA	NA	NA	NA
WP_010931310.1|741450_742401_+	ribose-phosphate pyrophosphokinase	NA	A0A2K9L8D8	Tupanvirus	35.5	7.3e-43
WP_029443719.1|742523_743138_+	50S ribosomal protein L25/general stress protein Ctc	NA	NA	NA	NA	NA
WP_010931308.1|743266_743863_+|tRNA	aminoacyl-tRNA hydrolase	tRNA	NA	NA	NA	NA
WP_010931307.1|743859_744642_+|protease	CPBP family intramembrane metalloprotease	protease	NA	NA	NA	NA
WP_010931306.1|744714_745806_+	redox-regulated ATPase YchF	NA	NA	NA	NA	NA
WP_010931305.1|746085_747213_+|integrase	site-specific integrase	integrase	A0A1B0VMI6	Pseudomonas_phage	33.6	1.4e-48
WP_010931304.1|747554_748601_+	Fic family protein	NA	NA	NA	NA	NA
WP_010931303.1|748748_751868_+	DEAD/DEAH box helicase family protein	NA	NA	NA	NA	NA
WP_023994585.1|751869_754821_+	DNA methylase	NA	G8I4P9	Mycobacterium_phage	25.1	2.9e-21
WP_010931301.1|754836_756048_+	AAA family ATPase	NA	NA	NA	NA	NA
WP_010931070.1|756231_757182_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_077274087.1|757198_757693_+	DUF4276 family protein	NA	NA	NA	NA	NA
WP_019247740.1|757696_757954_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019248455.1|758497_759409_+	UvrD-helicase domain-containing protein	NA	NA	NA	NA	NA
WP_029443992.1|759490_759775_+	ATP-dependent helicase	NA	A0A1V0SIN4	Klosneuvirus	34.1	6.8e-05
WP_005012067.1|760558_761509_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
760402:760420	attR	ACTCGGCCACGCCAGGCAG	NA	NA	NA	NA
WP_019247178.1|761927_764492_-	autotransporter domain-containing protein	NA	NA	NA	NA	NA
WP_019247179.1|764536_766390_-	autotransporter-associated beta strand repeat-containing protein	NA	NA	NA	NA	NA
WP_014905963.1|766722_768294_+	winged helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|769735_770686_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 8
NZ_CP010843	Bordetella pertussis strain H542 chromosome, complete genome	4103349	1017670	1119012	4103349	transposase,tRNA	Bacillus_virus(22.22%)	90	NA	NA
WP_003813026.1|1017670_1018786_+|tRNA	tRNA 2-thiouridine(34) synthase MnmA	tRNA	NA	NA	NA	NA
WP_003813022.1|1018886_1019705_+	sulfite exporter TauE/SafE family protein	NA	NA	NA	NA	NA
WP_010931185.1|1019802_1020414_-	glutathione S-transferase	NA	NA	NA	NA	NA
WP_010931184.1|1020573_1021950_+	adenylosuccinate lyase	NA	A0A2H4UUU6	Bodo_saltans_virus	47.5	2.2e-109
WP_003813017.1|1022012_1022471_+	cytochrome c	NA	NA	NA	NA	NA
WP_003813013.1|1022555_1023251_-	cytochrome b/b6 domain-containing protein	NA	NA	NA	NA	NA
WP_003813010.1|1023312_1023594_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931182.1|1024156_1024909_+	DUF3053 domain-containing protein	NA	NA	NA	NA	NA
WP_003813006.1|1024953_1026030_+	AI-2E family transporter	NA	NA	NA	NA	NA
WP_005012067.1|1026026_1026977_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014486100.1|1027079_1027742_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019249309.1|1027836_1028007_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247599.1|1028359_1029361_+	amidase	NA	NA	NA	NA	NA
WP_003818702.1|1029363_1030560_+	CoA transferase	NA	NA	NA	NA	NA
WP_014486098.1|1030580_1031384_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_019247598.1|1031464_1031761_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247597.1|1031791_1032355_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_014486097.1|1032395_1033253_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_014486096.1|1034030_1034903_+	polysaccharide deacetylase family protein	NA	NA	NA	NA	NA
WP_014486095.1|1034931_1035711_+	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_014486094.1|1035744_1036542_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003808978.1|1039196_1039589_+	hypothetical protein	NA	NA	NA	NA	NA
WP_014486091.1|1039582_1040443_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003818691.1|1040446_1041409_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_014486089.1|1042185_1042875_+	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	28.8	4.8e-12
WP_010930208.1|1043735_1044686_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931181.1|1045035_1045905_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010926062.1|1045975_1046671_+	ankyrin repeat domain-containing protein	NA	NA	NA	NA	NA
WP_010931179.1|1046660_1047170_+	nucleoside deaminase	NA	NA	NA	NA	NA
WP_010931178.1|1047166_1048387_+	MFS transporter	NA	NA	NA	NA	NA
WP_010931177.1|1048334_1049237_-	transcriptional regulator GcvA	NA	NA	NA	NA	NA
WP_023997744.1|1050123_1051410_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931176.1|1051448_1052822_+	amidase	NA	NA	NA	NA	NA
WP_010931175.1|1052860_1053562_-	riboflavin synthase	NA	NA	NA	NA	NA
WP_010931174.1|1053860_1054850_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003809010.1|1054950_1055412_+	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931173.1|1055427_1055976_-	cysteine dioxygenase family protein	NA	NA	NA	NA	NA
WP_010931172.1|1056117_1057593_-	acyl--CoA ligase	NA	Q75ZG1	Hepacivirus	25.6	3.0e-35
WP_010931171.1|1057698_1058790_+	DUF2817 domain-containing protein	NA	NA	NA	NA	NA
WP_010931170.1|1058793_1059576_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931169.1|1059585_1060374_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	40.0	1.1e-33
WP_010931168.1|1061499_1061934_-	PaaI family thioesterase	NA	NA	NA	NA	NA
WP_010931167.1|1061930_1062941_-	zinc-binding dehydrogenase	NA	NA	NA	NA	NA
WP_003809025.1|1062984_1063911_-	VOC family protein	NA	NA	NA	NA	NA
WP_003809026.1|1064197_1064566_+	DUF861 domain-containing protein	NA	NA	NA	NA	NA
WP_023853143.1|1064782_1065733_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931164.1|1068251_1068944_+	HD domain-containing protein	NA	A0A1D6Y7U0	Golden_Marseillevirus	29.9	4.7e-07
WP_010931163.1|1069016_1070216_+	aspartate/tyrosine/aromatic aminotransferase	NA	NA	NA	NA	NA
WP_003819549.1|1070233_1071139_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931162.1|1071254_1072184_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_010931161.1|1072209_1073556_+	MFS transporter	NA	NA	NA	NA	NA
WP_010931160.1|1073583_1074333_+	SDR family oxidoreductase	NA	A0A0M4JSW6	Mollivirus	26.4	1.2e-11
WP_010931159.1|1074346_1075129_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_005012067.1|1075321_1076272_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931158.1|1076333_1077443_-	porin	NA	NA	NA	NA	NA
WP_003815281.1|1077955_1078792_-	3-methyl-2-oxobutanoate hydroxymethyltransferase	NA	A0A0P0BXC9	Ostreococcus_lucimarinus_virus	33.3	1.6e-33
WP_023997028.1|1078861_1079827_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|1079823_1080774_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247492.1|1081159_1081702_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|1082737_1083688_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247402.1|1083929_1084298_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019248356.1|1084343_1085468_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931156.1|1086602_1087355_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010931155.1|1087446_1088067_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_023852714.1|1088170_1089121_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931154.1|1089117_1091226_-	AsmA family protein	NA	NA	NA	NA	NA
WP_003820814.1|1091370_1092030_-	DNA-3-methyladenine glycosylase I	NA	NA	NA	NA	NA
WP_003820813.1|1092061_1092526_-	redox-sensitive transcriptional activator SoxR	NA	NA	NA	NA	NA
WP_019248355.1|1092801_1092987_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931153.1|1093038_1093791_-	DNA-binding protein	NA	NA	NA	NA	NA
WP_010931152.1|1093797_1095060_-	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_023852748.1|1095101_1096340_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003820806.1|1097417_1098545_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	32.3	1.2e-23
WP_003814524.1|1098555_1099383_-	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
WP_010931150.1|1099369_1100236_-	sugar ABC transporter permease	NA	NA	NA	NA	NA
WP_010931149.1|1101602_1102007_-	hypothetical protein	NA	NA	NA	NA	NA
WP_033446288.1|1102369_1103281_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003820799.1|1103295_1104006_+	FadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931147.1|1104002_1105247_+	DUF521 domain-containing protein	NA	NA	NA	NA	NA
WP_003820797.1|1105248_1105683_+	DUF126 domain-containing protein	NA	NA	NA	NA	NA
WP_003814535.1|1105711_1106017_+	antibiotic biosynthesis monooxygenase	NA	NA	NA	NA	NA
WP_005012067.1|1106115_1107066_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247277.1|1107122_1108277_-	iron-containing alcohol dehydrogenase	NA	NA	NA	NA	NA
WP_010930176.1|1108351_1109302_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931144.1|1109833_1110631_-	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019247918.1|1110678_1111332_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_003814544.1|1111288_1112377_-	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	36.4	8.7e-32
WP_003814547.1|1112541_1114767_-	glycoside hydrolase family 31 protein	NA	NA	NA	NA	NA
WP_023852715.1|1117044_1117941_+	inositol monophosphatase	NA	NA	NA	NA	NA
WP_005012067.1|1118061_1119012_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 9
NZ_CP010843	Bordetella pertussis strain H542 chromosome, complete genome	4103349	1149398	1220369	4103349	transposase,protease	uncultured_Mediterranean_phage(25.0%)	52	NA	NA
WP_005012808.1|1149398_1150349_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931130.1|1150405_1151518_+	Ldh family oxidoreductase	NA	NA	NA	NA	NA
WP_005012067.1|1153901_1154852_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931129.1|1155442_1156219_+	2-dehydro-3-deoxyglucarate aldolase	NA	NA	NA	NA	NA
WP_003812908.1|1156336_1156600_-	30S ribosomal protein S20	NA	NA	NA	NA	NA
WP_010931128.1|1156700_1157705_-	FecR domain-containing protein	NA	NA	NA	NA	NA
WP_010931127.1|1157905_1159507_-	murein biosynthesis integral membrane protein MurJ	NA	NA	NA	NA	NA
WP_010931126.1|1159532_1160291_-	3-hydroxyacyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_010931125.1|1160382_1161039_-	adenylate kinase	NA	NA	NA	NA	NA
WP_010931124.1|1161129_1161894_-	3-deoxy-manno-octulosonate cytidylyltransferase	NA	NA	NA	NA	NA
WP_003812895.1|1161903_1162092_-	Trm112 family protein	NA	NA	NA	NA	NA
WP_010931123.1|1162147_1163191_-	tetraacyldisaccharide 4'-kinase	NA	NA	NA	NA	NA
WP_010931122.1|1163187_1163601_-	biopolymer transporter ExbD	NA	NA	NA	NA	NA
WP_003812889.1|1163597_1164218_-	MotA/TolQ/ExbB proton channel family protein	NA	NA	NA	NA	NA
WP_005012067.1|1164498_1165449_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931120.1|1165616_1167008_+	exodeoxyribonuclease VII large subunit	NA	A0A1V0SD82	Indivirus	32.0	1.4e-29
WP_010931119.1|1167080_1167659_+	superoxide dismutase [Fe]	NA	NA	NA	NA	NA
WP_019247560.1|1167775_1169173_+	chloride channel protein	NA	NA	NA	NA	NA
WP_010931117.1|1169288_1170494_+	3-oxoadipyl-CoA thiolase	NA	NA	NA	NA	NA
WP_003820399.1|1170593_1171112_-	DUF192 domain-containing protein	NA	A0A1B1IUW8	uncultured_Mediterranean_phage	42.2	5.1e-14
WP_003812875.1|1171206_1171452_-	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	76.6	1.3e-20
WP_003820400.1|1171679_1171994_+|protease	ATP-dependent Clp protease adapter ClpS	protease	A0A1B1IT64	uncultured_Mediterranean_phage	43.8	1.2e-10
WP_010931116.1|1172083_1177273_+	alpha-2-macroglobulin family protein	NA	NA	NA	NA	NA
WP_010931115.1|1177269_1179438_+	penicillin-binding protein 1C	NA	NA	NA	NA	NA
WP_010931114.1|1179493_1181809_+|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	protease	A0A223W0B1	Agrobacterium_phage	41.9	4.1e-164
WP_003820402.1|1181813_1183133_+	PqiA/YebS family transporter subunit	NA	NA	NA	NA	NA
WP_014905522.1|1183151_1184825_+	MCE family protein	NA	NA	NA	NA	NA
WP_010931111.1|1184829_1185498_+	membrane integrity-associated transporter subunit PqiC	NA	NA	NA	NA	NA
WP_010931110.1|1185654_1189476_+	trifunctional transcriptional regulator/proline dehydrogenase/L-glutamate gamma-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
WP_010930800.1|1189806_1190757_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812857.1|1190778_1191924_+	branched-chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003820410.1|1192072_1193002_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003812851.1|1192998_1194087_+	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
WP_010931109.1|1194083_1194887_+	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	23.5	7.9e-14
WP_003812846.1|1194883_1195615_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	31.0	1.4e-12
WP_010931108.1|1195672_1196962_-	MFS transporter	NA	NA	NA	NA	NA
WP_010931107.1|1197058_1197661_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003812839.1|1202214_1202553_-	P-II family nitrogen regulator	NA	NA	NA	NA	NA
WP_010931105.1|1203260_1203527_+	accessory factor UbiK family protein	NA	NA	NA	NA	NA
WP_005012067.1|1205233_1206184_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931103.1|1206180_1207512_-	MFS transporter	NA	NA	NA	NA	NA
WP_010931102.1|1208772_1210773_+	cytochrome o ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
WP_003819722.1|1210765_1211407_+	cytochrome o ubiquinol oxidase subunit III	NA	NA	NA	NA	NA
WP_003809276.1|1211403_1211811_+	cytochrome o ubiquinol oxidase subunit IV	NA	NA	NA	NA	NA
WP_010931101.1|1211807_1212608_+	SURF1 family protein	NA	NA	NA	NA	NA
WP_010931100.1|1212682_1213387_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010931099.1|1213418_1214213_+	N-formylglutamate deformylase	NA	NA	NA	NA	NA
WP_005013747.1|1214209_1215160_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023995489.1|1215258_1216209_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812014.1|1216307_1216742_-	Cd(II)/Pb(II)-responsive transcriptional regulator	NA	NA	NA	NA	NA
WP_010931098.1|1216824_1219161_+	heavy metal translocating P-type ATPase	NA	E4ZFI9	Streptococcus_phage	42.8	3.2e-124
WP_010930525.1|1219352_1220369_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
>prophage 10
NZ_CP010843	Bordetella pertussis strain H542 chromosome, complete genome	4103349	1267763	1348638	4103349	transposase,tRNA	Bacillus_virus(25.0%)	58	NA	NA
WP_010927663.1|1267763_1268714_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931070.1|1268710_1269661_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931069.1|1269921_1270950_-	DctP family TRAP transporter solute-binding subunit	NA	NA	NA	NA	NA
WP_010931068.1|1271029_1272328_-	TRAP transporter large permease	NA	NA	NA	NA	NA
WP_003816847.1|1272324_1272906_-	TRAP transporter small permease	NA	NA	NA	NA	NA
WP_010931067.1|1273218_1277265_+	phosphoribosylformylglycinamidine synthase	NA	A9YX36	Burkholderia_phage	67.4	6.3e-160
WP_010931066.1|1277505_1285167_+	hemagglutinin repeat-containing protein	NA	A0A0R6PJK4	Moraxella_phage	30.9	7.3e-24
WP_005012067.1|1285163_1286114_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931065.1|1287253_1287727_-	MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931064.1|1287866_1288487_-	cupin domain-containing protein	NA	NA	NA	NA	NA
WP_010931063.1|1288622_1289423_+	aldolase	NA	NA	NA	NA	NA
WP_003810897.1|1289477_1290569_+	TRAP transporter substrate-binding protein DctP	NA	NA	NA	NA	NA
WP_010931062.1|1290590_1291034_-	6-carboxytetrahydropterin synthase QueD	NA	NA	NA	NA	NA
WP_010931061.1|1291062_1291695_-	7-carboxy-7-deazaguanine synthase	NA	NA	NA	NA	NA
WP_003810909.1|1291805_1292222_+|tRNA	aminoacyl-tRNA hydrolase	tRNA	NA	NA	NA	NA
WP_010931060.1|1292214_1292907_+	DUF2238 domain-containing protein	NA	NA	NA	NA	NA
WP_010931059.1|1293013_1293388_+	MAPEG family protein	NA	NA	NA	NA	NA
WP_010931058.1|1293464_1294274_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931057.1|1294369_1295314_+	dihydrodipicolinate synthase family protein	NA	NA	NA	NA	NA
WP_003816577.1|1295352_1296324_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003810921.1|1296414_1296852_-	carboxypeptidase regulatory-like domain-containing protein	NA	NA	NA	NA	NA
WP_029443733.1|1296910_1297792_-	NRDE family protein	NA	NA	NA	NA	NA
WP_010931054.1|1298795_1299656_+	amidohydrolase	NA	NA	NA	NA	NA
WP_010931053.1|1299688_1301071_+	FAD-dependent oxidoreductase	NA	A0A2P0ZL82	Lactobacillus_phage	28.4	7.9e-30
WP_010931052.1|1301067_1302087_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019247407.1|1302459_1302954_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010931051.1|1302961_1303702_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931050.1|1303782_1305387_-	glycerol-3-phosphate dehydrogenase/oxidase	NA	NA	NA	NA	NA
WP_010931049.1|1305426_1306215_-	DeoR family transcriptional regulator	NA	A0A077SK06	Escherichia_phage	30.4	2.0e-22
WP_010931048.1|1307417_1308506_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	28.1	9.7e-15
WP_010931047.1|1309386_1310199_+	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
WP_004568502.1|1310211_1310520_+	DUF2160 domain-containing protein	NA	NA	NA	NA	NA
WP_010931046.1|1310637_1312368_+	carbohydrate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019249399.1|1312369_1313515_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931044.1|1313644_1314313_-	DUF502 domain-containing protein	NA	NA	NA	NA	NA
WP_003810957.1|1314434_1314902_-	winged helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_019247521.1|1315037_1316420_+	D-amino acid dehydrogenase	NA	NA	NA	NA	NA
WP_014486086.1|1316416_1317541_+	DNA repair exonuclease	NA	NA	NA	NA	NA
WP_010931042.1|1317537_1320174_+	AAA family ATPase	NA	NA	NA	NA	NA
WP_010931070.1|1320589_1321540_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931041.1|1325286_1325898_-	DUF2239 family protein	NA	NA	NA	NA	NA
WP_003812368.1|1326120_1327581_+	IMP dehydrogenase	NA	A0A1V0SHK8	Klosneuvirus	41.3	1.6e-97
WP_010931040.1|1327677_1329270_+	glutamine-hydrolyzing GMP synthase	NA	A0A1V0SH76	Hokovirus	33.3	1.0e-17
WP_019247974.1|1329623_1329881_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003816876.1|1329882_1331223_+	type II toxin-antitoxin system HipA family toxin	NA	NA	NA	NA	NA
WP_010931038.1|1331318_1332008_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247976.1|1332020_1333451_+	MFS transporter	NA	NA	NA	NA	NA
WP_014905903.1|1335175_1335997_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931036.1|1336007_1337579_+	amidohydrolase	NA	NA	NA	NA	NA
WP_010931035.1|1337607_1338585_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931034.1|1338611_1339415_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	38.2	2.7e-30
WP_010931033.1|1339411_1340206_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_003816890.1|1340213_1341449_+	DUF521 domain-containing protein	NA	NA	NA	NA	NA
WP_010931032.1|1341441_1341876_+	DUF126 domain-containing protein	NA	NA	NA	NA	NA
WP_005013747.1|1342625_1343576_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931031.1|1344197_1345925_-	sulfate permease	NA	NA	NA	NA	NA
WP_010931030.1|1346036_1347395_+	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
WP_005013747.1|1347687_1348638_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 11
NZ_CP010843	Bordetella pertussis strain H542 chromosome, complete genome	4103349	1468033	1520186	4103349	transposase,tRNA	Salmonella_phage(25.0%)	45	NA	NA
WP_005013747.1|1468033_1468984_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814065.1|1469150_1469504_+	cytochrome c	NA	NA	NA	NA	NA
WP_003814063.1|1469516_1469879_+	cytochrome c	NA	NA	NA	NA	NA
WP_003814061.1|1469920_1470346_-	DUF1841 family protein	NA	NA	NA	NA	NA
WP_003814059.1|1470548_1471805_+	NADP-dependent isocitrate dehydrogenase	NA	Q77Z09	Phage_21	64.8	1.2e-11
WP_003814057.1|1472003_1472984_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005015028.1|1473133_1474375_+	O-antigen ligase family protein	NA	NA	NA	NA	NA
WP_005013747.1|1474473_1475424_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814052.1|1475432_1476128_-	two-component system response regulator KdpE	NA	NA	NA	NA	NA
WP_003814050.1|1478949_1479549_-	potassium-transporting ATPase subunit KdpC	NA	NA	NA	NA	NA
WP_010930950.1|1479559_1481725_-	potassium-transporting ATPase subunit KdpB	NA	M1HBF8	Paramecium_bursaria_Chlorella_virus	27.1	1.2e-24
WP_010930949.1|1481748_1483533_-	potassium-transporting ATPase subunit KdpA	NA	NA	NA	NA	NA
WP_017685545.1|1483532_1483622_-	K(+)-transporting ATPase subunit F	NA	NA	NA	NA	NA
WP_003814042.1|1484316_1484589_+	DUF4212 domain-containing protein	NA	NA	NA	NA	NA
WP_003814040.1|1484588_1486655_+	cation acetate symporter	NA	NA	NA	NA	NA
WP_010929577.1|1486651_1487602_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|1487700_1488651_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005015014.1|1488766_1489099_-	multidrug transporter	NA	NA	NA	NA	NA
WP_010929073.1|1489095_1489782_-	Smr/MutS family protein	NA	NA	NA	NA	NA
WP_010930948.1|1489768_1490728_-	thioredoxin-disulfide reductase	NA	A0A2I2L5E1	Orpheovirus	40.2	3.1e-57
WP_003814032.1|1490769_1493130_+	DNA translocase FtsK	NA	S5VNE3	Mycobacterium_phage	48.0	7.6e-81
WP_010930946.1|1493129_1493762_+	outer membrane lipoprotein chaperone LolA	NA	NA	NA	NA	NA
WP_010930945.1|1493863_1495204_+	replication-associated recombination protein A	NA	G3MBE0	Bacillus_virus	38.9	1.6e-75
WP_010930944.1|1495250_1496606_+|tRNA	serine--tRNA ligase	tRNA	A0A1B1IVT2	uncultured_Mediterranean_phage	47.5	1.6e-83
WP_170954289.1|1496731_1497376_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003814024.1|1497320_1497638_-	virulence factor	NA	NA	NA	NA	NA
WP_003814023.1|1497910_1498426_-	hypothetical protein	NA	T1SAR8	Salmonella_phage	44.6	5.1e-06
WP_003814022.1|1498519_1498681_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003814021.1|1498696_1499452_-	GGDEF domain-containing protein	NA	NA	NA	NA	NA
WP_019247690.1|1499790_1499997_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003814020.1|1500004_1500664_-	NAAT family transporter	NA	NA	NA	NA	NA
WP_010930941.1|1500958_1503163_-	TonB-dependent alcaligin siderophore receptor FauA	NA	NA	NA	NA	NA
WP_010930940.1|1503273_1504497_-	alcaligin siderophore export MFS transporter Bcr	NA	S4TR35	Salmonella_phage	29.4	9.8e-24
WP_003814017.1|1504619_1505594_-	alcaligin siderophore biosynthesis transcriptional regulator AlcR	NA	NA	NA	NA	NA
WP_005013753.1|1505661_1506855_-	alcaligin siderophore biosynthesis protein AlcE	NA	NA	NA	NA	NA
WP_003814016.1|1506869_1507670_-	alcaligin siderophore biosynthesis protein AlcD	NA	NA	NA	NA	NA
WP_010930939.1|1507666_1509523_-	alcaligin siderophore biosynthesis protein AlcC	NA	NA	NA	NA	NA
WP_003814014.1|1509519_1510125_-	alcaligin siderophore biosynthesis protein AlcB	NA	NA	NA	NA	NA
WP_003814013.1|1510143_1511529_-	alcaligin siderophore biosynthesis protein AlcA	NA	NA	NA	NA	NA
WP_003814012.1|1512254_1513481_+	cation:proton antiporter	NA	NA	NA	NA	NA
WP_003814011.1|1513569_1514352_+	3-hydroxybutyrate dehydrogenase	NA	NA	NA	NA	NA
WP_005012067.1|1514450_1515401_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814010.1|1515427_1516201_+	peroxide stress protein YaaA	NA	NA	NA	NA	NA
WP_003814009.1|1516212_1517454_+	MFS transporter	NA	NA	NA	NA	NA
WP_076879548.1|1519235_1520186_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 12
NZ_CP010843	Bordetella pertussis strain H542 chromosome, complete genome	4103349	1564111	1632197	4103349	transposase,tRNA	Streptococcus_virus(11.11%)	59	NA	NA
WP_010930416.1|1564111_1564600_+|tRNA	Cys-tRNA(Pro) deacylase	tRNA	NA	NA	NA	NA
WP_019248504.1|1564717_1565296_+	DJ-1/PfpI family protein	NA	NA	NA	NA	NA
WP_010930418.1|1565401_1565770_+	ribbon-helix-helix domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|1565868_1566819_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994932.1|1566825_1567938_-	D-alanyl-D-alanine endopeptidase	NA	NA	NA	NA	NA
WP_010930419.1|1568624_1569827_+	MFS transporter	NA	NA	NA	NA	NA
WP_004568212.1|1569862_1570009_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930420.1|1570030_1572691_+	PD-(D/E)XK nuclease family protein	NA	NA	NA	NA	NA
WP_010930421.1|1572703_1576108_+	UvrD-helicase domain-containing protein	NA	NA	NA	NA	NA
WP_023995689.1|1576775_1579001_+	DNA polymerase III subunit gamma/tau	NA	A0A1U9WR94	Streptococcus_virus	38.5	1.2e-43
WP_010930423.1|1579047_1579374_+	YbaB/EbfC family nucleoid-associated protein	NA	NA	NA	NA	NA
WP_010930424.1|1579424_1580033_+	recombination protein RecR	NA	NA	NA	NA	NA
WP_005013747.1|1580131_1581082_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930425.1|1581151_1581916_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930426.1|1581912_1582512_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930427.1|1582615_1583467_-	neutral zinc metallopeptidase	NA	A0A1I9SA48	Rhodococcus_phage	35.3	7.0e-37
WP_010928449.1|1583526_1584153_+	threonylcarbamoyl-AMP synthase	NA	NA	NA	NA	NA
WP_005012067.1|1584149_1585100_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019249265.1|1585198_1586311_-	DUF1513 domain-containing protein	NA	NA	NA	NA	NA
WP_019248041.1|1586300_1587302_-	imelysin family protein	NA	NA	NA	NA	NA
WP_019247498.1|1587407_1588919_-	c-type cytochrome	NA	NA	NA	NA	NA
WP_023853587.1|1588915_1590220_-	imelysin	NA	NA	NA	NA	NA
WP_010930431.1|1590331_1590892_-	membrane protein	NA	NA	NA	NA	NA
WP_010930432.1|1591159_1591714_+	NAD(P)H-dependent oxidoreductase	NA	A0A2P0ZL82	Lactobacillus_phage	32.0	1.7e-15
WP_010930433.1|1592169_1592385_-	dodecin domain-containing protein	NA	NA	NA	NA	NA
WP_033446228.1|1592639_1595237_+	DNA mismatch repair protein MutS	NA	A0A1V0SDQ0	Indivirus	22.6	1.5e-21
WP_010930435.1|1595233_1596421_+	cupin domain-containing protein	NA	NA	NA	NA	NA
WP_010930436.1|1597079_1597694_+	serotype 3 fimbrial subunit	NA	NA	NA	NA	NA
WP_010930437.1|1597782_1598910_-	outer membrane protein assembly factor BamC	NA	NA	NA	NA	NA
WP_033446216.1|1598921_1599827_-	4-hydroxy-tetrahydrodipicolinate synthase	NA	NA	NA	NA	NA
WP_005012067.1|1600719_1601670_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930439.1|1601851_1602604_+	glutamine ABC transporter substrate-binding protein GlnH	NA	NA	NA	NA	NA
WP_003811112.1|1602672_1603332_+	glutamine ABC transporter permease GlnP	NA	NA	NA	NA	NA
WP_003811113.1|1603328_1604057_+	glutamine ABC transporter ATP-binding protein GlnQ	NA	G9BWD6	Planktothrix_phage	39.3	3.3e-35
WP_010930440.1|1604069_1606349_-	bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase	NA	A0A1B1IUF0	uncultured_Mediterranean_phage	32.1	5.9e-06
WP_010930441.1|1606373_1606577_-	DNA-directed RNA polymerase subunit omega	NA	NA	NA	NA	NA
WP_010930442.1|1606618_1607251_-	guanylate kinase	NA	A0A218KC48	Bacillus_phage	33.9	2.4e-13
WP_010930443.1|1607386_1608304_-	c-type cytochrome	NA	NA	NA	NA	NA
WP_010930444.1|1608300_1609014_-	c-type cytochrome	NA	NA	NA	NA	NA
WP_003811135.1|1609251_1610022_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_003811137.1|1610026_1610626_-	C40 family peptidase	NA	A0A0A8WF62	Clostridium_phage	41.6	1.4e-20
WP_003811138.1|1610870_1612361_+	AMP nucleosidase	NA	NA	NA	NA	NA
WP_010926696.1|1612419_1612704_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010930445.1|1612841_1612997_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003811148.1|1613269_1614196_-	YicC family protein	NA	NA	NA	NA	NA
WP_003811149.1|1614332_1615073_+	ribonuclease PH	NA	NA	NA	NA	NA
WP_010930446.1|1615239_1616616_-	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_003811152.1|1616797_1617703_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930448.1|1619354_1621157_-	EAL domain-containing protein	NA	NA	NA	NA	NA
WP_010930449.1|1621283_1621925_+	RdgB/HAM1 family non-canonical purine NTP pyrophosphatase	NA	NA	NA	NA	NA
WP_005012808.1|1622023_1622974_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930450.1|1622995_1624216_+	oxygen-independent coproporphyrinogen III oxidase-like protein	NA	NA	NA	NA	NA
WP_003811164.1|1624401_1625814_+	type I glutamate--ammonia ligase	NA	NA	NA	NA	NA
WP_003811167.1|1625877_1626945_+	PAS domain-containing protein	NA	Q8QKV7	Ectocarpus_siliculosus_virus	23.5	1.1e-05
WP_010930451.1|1626944_1628432_+	nitrogen regulation protein NR(I)	NA	NA	NA	NA	NA
WP_010930452.1|1628441_1629386_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811176.1|1629545_1630244_+	pirin family protein	NA	NA	NA	NA	NA
WP_010930453.1|1630321_1631227_+	pirin family protein	NA	NA	NA	NA	NA
WP_005012067.1|1631246_1632197_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 13
NZ_CP010843	Bordetella pertussis strain H542 chromosome, complete genome	4103349	1668146	1723737	4103349	transposase	Brazilian_cedratvirus(25.0%)	47	NA	NA
WP_005013747.1|1668146_1669097_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930486.1|1669155_1669929_+	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_014486074.1|1669921_1671478_+	LTA synthase family protein	NA	NA	NA	NA	NA
WP_005013747.1|1671474_1672425_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003810741.1|1673751_1674354_-	TetR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003810743.1|1674593_1675295_-	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
WP_003816696.1|1675288_1676071_-	ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	25.8	2.0e-09
WP_005012808.1|1676255_1677206_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930483.1|1677304_1678042_-	TerC family protein	NA	A0A0S4KZH7	Pseudomonas_phage	46.6	4.1e-41
WP_010926609.1|1678231_1678990_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930482.1|1679036_1680026_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930481.1|1680203_1681172_-	transporter	NA	NA	NA	NA	NA
WP_010930480.1|1682711_1683680_+	AAA family ATPase	NA	NA	NA	NA	NA
WP_010930479.1|1683688_1684630_+	DUF58 domain-containing protein	NA	NA	NA	NA	NA
WP_010930478.1|1685103_1686114_+	VWA domain-containing protein	NA	NA	NA	NA	NA
WP_010930477.1|1686104_1687619_+	VWA domain-containing protein	NA	NA	NA	NA	NA
WP_010930476.1|1687615_1688962_+	BatD family protein	NA	NA	NA	NA	NA
WP_010930475.1|1688964_1689999_+	haloacid dehalogenase-like hydrolase	NA	NA	NA	NA	NA
WP_023852967.1|1690048_1691674_+	arylsulfatase	NA	A0A2P0VMN7	Tetraselmis_virus	52.2	2.0e-149
WP_005012067.1|1692226_1693177_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930487.1|1693281_1694229_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247865.1|1694282_1696097_-	sensor histidine kinase	NA	NA	NA	NA	NA
WP_010930489.1|1696089_1696764_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_023995112.1|1696893_1699968_+	autotransporter SphB2	NA	NA	NA	NA	NA
WP_019247905.1|1699981_1700281_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010930492.1|1700595_1701219_-	glutathione S-transferase family protein	NA	NA	NA	NA	NA
WP_010930493.1|1701462_1702332_+	TauD/TfdA family dioxygenase	NA	NA	NA	NA	NA
WP_010930494.1|1702309_1703254_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247909.1|1703339_1704266_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019247910.1|1704378_1705158_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930497.1|1705148_1706345_-	alpha-hydroxy-acid oxidizing protein	NA	NA	NA	NA	NA
WP_010930498.1|1706375_1707326_-	fumarylacetoacetate hydrolase family protein	NA	NA	NA	NA	NA
WP_010930499.1|1707547_1708237_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930500.1|1708301_1709057_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930501.1|1709108_1710101_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930502.1|1710110_1711064_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811538.1|1711179_1712142_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019249376.1|1713543_1713972_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|1713968_1714919_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_170954298.1|1715212_1715950_-	arsenical resistance protein ArsH	NA	A0A2H4J5V6	uncultured_Caudovirales_phage	68.2	1.3e-87
WP_010930504.1|1716373_1717561_-	MFS transporter	NA	NA	NA	NA	NA
WP_019249653.1|1717564_1717945_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010930506.1|1719664_1720636_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930507.1|1720649_1721363_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930508.1|1721367_1722285_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811452.1|1722391_1722688_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929588.1|1722786_1723737_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 14
NZ_CP010843	Bordetella pertussis strain H542 chromosome, complete genome	4103349	1745395	1837366	4103349	transposase,tRNA	Moraxella_phage(25.0%)	60	NA	NA
WP_005012067.1|1745395_1746346_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014905945.1|1746444_1747395_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003810867.1|1747418_1747883_-	GatB/YqeY domain-containing protein	NA	A0A0K2FLI9	Brevibacillus_phage	32.4	3.9e-05
WP_010930799.1|1748029_1749238_+	NO-inducible flavohemoprotein	NA	NA	NA	NA	NA
WP_010930798.1|1749281_1749719_+	Rrf2 family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930797.1|1749837_1751127_+	D-amino acid dehydrogenase	NA	NA	NA	NA	NA
WP_005012067.1|1753867_1754818_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930595.1|1754916_1755933_-	folate-binding protein YgfZ	NA	NA	NA	NA	NA
WP_010930596.1|1756111_1757146_+	endolytic transglycosylase MltG	NA	NA	NA	NA	NA
WP_003811733.1|1757142_1757769_+	dTMP kinase	NA	A0A1L2BX49	Bacteriophage	35.1	1.6e-22
WP_010930597.1|1757765_1758818_+	DNA polymerase III subunit delta'	NA	NA	NA	NA	NA
WP_010930598.1|1758867_1759638_+	TatD family hydrolase	NA	NA	NA	NA	NA
WP_010930599.1|1759688_1760525_+	ankyrin repeat domain-containing protein	NA	NA	NA	NA	NA
WP_010930600.1|1760720_1761461_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930601.1|1761535_1762279_+	glutamine ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_020699606.1|1762955_1763714_+	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	37.9	6.7e-31
WP_003811716.1|1764851_1766141_+	Glu/Leu/Phe/Val dehydrogenase	NA	NA	NA	NA	NA
WP_010930602.1|1767751_1768999_-	Zn-dependent hydrolase	NA	NA	NA	NA	NA
WP_010930603.1|1769008_1770718_-	thiamine pyrophosphate-binding protein	NA	A0A0P0YLY7	Yellowstone_lake_phycodnavirus	27.3	5.9e-35
WP_003811709.1|1770714_1771653_-	citrate lyase subunit beta	NA	NA	NA	NA	NA
WP_003811706.1|1771649_1772933_-	TRAP transporter large permease	NA	NA	NA	NA	NA
WP_010930604.1|1772936_1773419_-	TRAP transporter small permease	NA	NA	NA	NA	NA
WP_010930605.1|1773419_1774406_-	DctP family TRAP transporter solute-binding subunit	NA	NA	NA	NA	NA
WP_003811701.1|1774578_1775298_-	FadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005013747.1|1775414_1776365_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930606.1|1779550_1780900_+	amidase	NA	NA	NA	NA	NA
WP_010930607.1|1780957_1781752_+	putative hydro-lyase	NA	NA	NA	NA	NA
WP_003816497.1|1781885_1782761_+	EAL domain-containing protein	NA	NA	NA	NA	NA
WP_014486076.1|1782804_1786521_-	virulence factors two-component system sensor histidine kinase BvgS	NA	A0A1V0SGX0	Hokovirus	32.0	4.2e-33
WP_010930609.1|1786529_1787159_-	virulence factors two-component system response regulator BvgA	NA	NA	NA	NA	NA
WP_010930610.1|1787585_1798358_+	filamentous hemagglutinin/adhesin	NA	A0A0R6PJK4	Moraxella_phage	32.5	3.6e-29
WP_010930611.1|1799120_1799855_+	molecular chaperone FimB	NA	NA	NA	NA	NA
WP_010930612.1|1799917_1802539_+	fimbrial biogenesis outer membrane usher protein	NA	NA	NA	NA	NA
WP_019247160.1|1802519_1803650_+	type 1 fimbrial protein	NA	NA	NA	NA	NA
WP_010930614.1|1803642_1805397_+	filamentous hemagglutinin transporter protein FhaC	NA	NA	NA	NA	NA
WP_010930615.1|1806714_1807215_-	TRAP transporter small permease	NA	NA	NA	NA	NA
WP_010930616.1|1807221_1808196_-	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930617.1|1809752_1810244_-	TRAP transporter small permease	NA	NA	NA	NA	NA
WP_010930618.1|1810257_1811223_-	TRAP transporter substrate-binding protein DctP	NA	NA	NA	NA	NA
WP_019247163.1|1811243_1811945_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930620.1|1813119_1813632_+	winged helix DNA-binding protein	NA	NA	NA	NA	NA
WP_010930621.1|1813710_1817334_+	hydantoinase B/oxoprolinase family protein	NA	NA	NA	NA	NA
WP_010930622.1|1817347_1818379_-	C45 family peptidase	NA	NA	NA	NA	NA
WP_003809983.1|1819538_1820372_+	mechanosensitive ion channel	NA	NA	NA	NA	NA
WP_010930623.1|1820385_1821144_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010930624.1|1821305_1822298_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930625.1|1822515_1823292_-	RNA methyltransferase	NA	NA	NA	NA	NA
WP_010930626.1|1823399_1824182_+	inositol monophosphatase	NA	NA	NA	NA	NA
WP_003809992.1|1824308_1825895_+	TerC family protein	NA	A0A0R6PEZ3	Moraxella_phage	42.0	1.9e-35
WP_010930627.1|1825919_1826783_+	undecaprenyl-diphosphate phosphatase	NA	NA	NA	NA	NA
WP_019247344.1|1826990_1827767_-	UDP-2,3-diacylglucosamine diphosphatase	NA	NA	NA	NA	NA
WP_003809999.1|1827759_1828269_-	peptidylprolyl isomerase	NA	NA	NA	NA	NA
WP_010930629.1|1828397_1829081_-	tetratricopeptide repeat protein	NA	NA	NA	NA	NA
WP_010930630.1|1829320_1830781_+|tRNA	cysteine--tRNA ligase	tRNA	A0A2K9L6B7	Tupanvirus	27.9	2.5e-34
WP_003820119.1|1830800_1831445_+	DNA-3-methyladenine glycosylase 2 family protein	NA	NA	NA	NA	NA
WP_003810007.1|1831481_1832447_+	acetyl-CoA carboxylase carboxyltransferase subunit alpha	NA	NA	NA	NA	NA
WP_023997643.1|1832545_1833496_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930632.1|1833625_1834591_+|tRNA	tRNA lysidine(34) synthetase TilS	tRNA	NA	NA	NA	NA
WP_010930633.1|1834690_1835956_+	aspartate kinase	NA	NA	NA	NA	NA
WP_010929632.1|1836349_1837366_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
>prophage 15
NZ_CP010843	Bordetella pertussis strain H542 chromosome, complete genome	4103349	2044953	2092968	4103349	transposase,tRNA	Moraxella_phage(18.18%)	42	NA	NA
WP_010930522.1|2044953_2045904_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930804.1|2046002_2048603_-	TRAP transporter fused permease subunit	NA	NA	NA	NA	NA
WP_003818658.1|2048709_2049714_-	TAXI family TRAP transporter solute-binding subunit	NA	NA	NA	NA	NA
WP_010930803.1|2049822_2051163_-	aspartate aminotransferase family protein	NA	A0A1V0SKB7	Klosneuvirus	22.8	8.8e-18
WP_003818661.1|2051203_2052232_-	MurR/RpiR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930802.1|2052427_2052973_+	winged helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010930801.1|2052969_2053530_+	diaminobutyrate acetyltransferase	NA	NA	NA	NA	NA
WP_010930048.1|2053628_2054579_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930523.1|2054616_2055204_+	YigZ family protein	NA	A0A1X9I5T8	Streptococcus_phage	35.8	4.7e-16
WP_003811007.1|2055221_2055605_-	thioredoxin family protein	NA	V9SJ74	Achromobacter_phage	25.8	8.1e-09
WP_003811011.1|2056964_2058257_-	NCS2 family permease	NA	A0A0R6PHV4	Moraxella_phage	36.0	1.7e-66
WP_010930524.1|2058391_2059432_+|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD	tRNA	A0A0R6PI74	Moraxella_phage	51.3	6.1e-91
WP_010929632.1|2059529_2060546_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003811015.1|2060813_2061461_-	glycerol-3-phosphate 1-O-acyltransferase PlsY	NA	NA	NA	NA	NA
WP_010930526.1|2061586_2062345_+	5'/3'-nucleotidase SurE	NA	A0A1B1ITZ2	uncultured_Mediterranean_phage	51.2	1.4e-68
WP_019247478.1|2062329_2063109_+	protein-L-isoaspartate(D-aspartate) O-methyltransferase	NA	A0A1B1IU40	uncultured_Mediterranean_phage	46.9	4.8e-32
WP_003811022.1|2063126_2064011_+	peptidoglycan DD-metalloendopeptidase family protein	NA	A0A292GJG6	Xanthomonas_phage	49.5	4.6e-15
WP_019248494.1|2064007_2064787_+	3'-5' exonuclease	NA	NA	NA	NA	NA
WP_010930528.1|2064891_2065491_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930529.1|2065779_2066532_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003816525.1|2066650_2068051_+	23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD	NA	A0A2K5B251	Erysipelothrix_phage	26.5	7.3e-31
WP_003816523.1|2068074_2068473_-	Cu(I)-responsive transcriptional regulator	NA	NA	NA	NA	NA
WP_003811035.1|2068648_2068849_+	heavy-metal-associated domain-containing protein	NA	NA	NA	NA	NA
WP_010930530.1|2068987_2069716_+	redoxin family protein	NA	A0A1D8KSL1	Synechococcus_phage	56.8	9.6e-43
WP_003816520.1|2069849_2071265_+	dihydrolipoyl dehydrogenase	NA	NA	NA	NA	NA
WP_003816518.1|2071268_2072132_-	23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ	NA	NA	NA	NA	NA
WP_004568486.1|2072144_2072894_-	glycerophosphodiester phosphodiesterase	NA	A0A2H4PGQ5	Escherichia_phage	27.8	1.5e-14
WP_019247881.1|2073076_2075092_+	SurA N-terminal domain-containing protein	NA	NA	NA	NA	NA
WP_019247882.1|2075073_2075742_-	arylesterase	NA	NA	NA	NA	NA
WP_005012067.1|2076516_2077467_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|2077565_2078516_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003813572.1|2078664_2079003_-	BON domain-containing protein	NA	NA	NA	NA	NA
WP_003813570.1|2079060_2079222_-	DUF1328 domain-containing protein	NA	NA	NA	NA	NA
WP_003813568.1|2079253_2079454_-	CsbD family protein	NA	NA	NA	NA	NA
WP_010930533.1|2079719_2082293_-	cyanophycin synthetase	NA	NA	NA	NA	NA
WP_019247811.1|2082363_2084913_-	cyanophycin synthetase	NA	NA	NA	NA	NA
WP_010930535.1|2087463_2087952_+	DUF1854 domain-containing protein	NA	NA	NA	NA	NA
WP_029443743.1|2088043_2089195_-	N-acetyltransferase	NA	NA	NA	NA	NA
WP_004566336.1|2089248_2090070_+	ferritin-like domain-containing protein	NA	NA	NA	NA	NA
WP_010930537.1|2090108_2091338_+	lytic murein transglycosylase	NA	NA	NA	NA	NA
WP_004566334.1|2091466_2091907_+	DUF937 domain-containing protein	NA	NA	NA	NA	NA
WP_005012808.1|2092017_2092968_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 16
NZ_CP010843	Bordetella pertussis strain H542 chromosome, complete genome	4103349	2154530	2213800	4103349	transposase,tRNA,protease	Klosneuvirus(40.0%)	51	NA	NA
WP_005013747.1|2154530_2155481_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930573.1|2155605_2156415_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010929577.1|2156615_2157566_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930574.1|2158839_2160057_+	four-carbon acid sugar kinase family protein	NA	NA	NA	NA	NA
WP_003818670.1|2161113_2162016_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930576.1|2162092_2162965_+	MOSC N-terminal beta barrel domain-containing protein	NA	NA	NA	NA	NA
WP_003818672.1|2163095_2163464_+	aspartate 1-decarboxylase	NA	NA	NA	NA	NA
WP_010930577.1|2163521_2164568_+	CDP-6-deoxy-delta-3,4-glucoseen reductase	NA	NA	NA	NA	NA
WP_010930578.1|2164763_2166020_+	D-amino acid dehydrogenase	NA	NA	NA	NA	NA
WP_003810623.1|2166024_2167362_+	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_003818676.1|2167511_2168468_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247555.1|2168570_2169503_-	acyclic terpene utilization AtuA family protein	NA	NA	NA	NA	NA
WP_019247554.1|2169618_2169939_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247553.1|2169931_2170291_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930581.1|2170338_2171913_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003810637.1|2171965_2172910_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010930582.1|2172927_2173758_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010930583.1|2173750_2175385_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	32.7	8.2e-18
WP_010930584.1|2175381_2176737_+	amidase	NA	NA	NA	NA	NA
WP_010930585.1|2177643_2179221_+	lipoprotein	NA	NA	NA	NA	NA
WP_010930586.1|2179224_2180499_+	type 4b pilus protein PilO2	NA	NA	NA	NA	NA
WP_010930587.1|2180596_2180971_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930588.1|2182686_2183820_+	general secretion pathway protein	NA	NA	NA	NA	NA
WP_003810661.1|2183857_2184463_+	prepilin-type N-terminal cleavage/methylation domain-containing protein	NA	NA	NA	NA	NA
WP_010930589.1|2184459_2185278_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930590.1|2185349_2187974_+|tRNA	alanine--tRNA ligase	tRNA	A0A1V0SK38	Klosneuvirus	39.4	1.7e-81
WP_004568544.1|2187960_2188215_+	sulfurtransferase TusA family protein	NA	NA	NA	NA	NA
WP_010930591.1|2188281_2188863_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010926757.1|2189166_2189427_+	30S ribosomal protein S16	NA	NA	NA	NA	NA
WP_014905757.1|2189592_2190216_+	ribosome maturation factor RimM	NA	NA	NA	NA	NA
WP_003816734.1|2190215_2190989_+|tRNA	tRNA (guanosine(37)-N1)-methyltransferase TrmD	tRNA	NA	NA	NA	NA
WP_010930593.1|2190985_2192194_-	aminotransferase class V-fold PLP-dependent enzyme	NA	NA	NA	NA	NA
WP_010930594.1|2192219_2192693_-	RidA family protein	NA	NA	NA	NA	NA
WP_010930048.1|2192766_2193717_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_076879566.1|2193815_2194766_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930796.1|2194864_2196214_-	two-component sensor histidine kinase	NA	NA	NA	NA	NA
WP_023852900.1|2196979_2197735_+	MipA/OmpV family protein	NA	NA	NA	NA	NA
WP_010930794.1|2197827_2200710_-|tRNA	valine--tRNA ligase	tRNA	A0A1V0SK04	Klosneuvirus	37.1	3.7e-138
WP_003810689.1|2201032_2201458_+	nucleoside-diphosphate kinase	NA	D2E8E1	Anguillid_herpesvirus	43.2	2.1e-21
WP_004568542.1|2201485_2202634_+	23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN	NA	NA	NA	NA	NA
WP_003810693.1|2202630_2203137_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010930793.1|2203143_2204439_+	flavodoxin-dependent (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase	NA	NA	NA	NA	NA
WP_023995843.1|2204497_2205784_+|tRNA	histidine--tRNA ligase	tRNA	NA	NA	NA	NA
WP_010930791.1|2205785_2206424_+	tetratricopeptide repeat protein	NA	NA	NA	NA	NA
WP_003810701.1|2206426_2207587_+	outer membrane protein assembly factor BamB	NA	NA	NA	NA	NA
WP_003810703.1|2207613_2208969_+	ribosome biogenesis GTPase Der	NA	NA	NA	NA	NA
WP_010930790.1|2208972_2210043_+	histidinol-phosphate transaminase	NA	A0A1X6WGT4	Pacmanvirus	25.7	2.5e-15
WP_003810707.1|2210181_2210418_+	RNA chaperone Hfq	NA	NA	NA	NA	NA
WP_010930789.1|2210505_2211612_+	GTPase HflX	NA	NA	NA	NA	NA
WP_010930788.1|2211577_2212882_+|protease	FtsH protease activity modulator HflK	protease	NA	NA	NA	NA
WP_010930787.1|2212900_2213800_+|protease	protease modulator HflC	protease	NA	NA	NA	NA
>prophage 17
NZ_CP010843	Bordetella pertussis strain H542 chromosome, complete genome	4103349	2224040	2268363	4103349	transposase	Staphylococcus_phage(25.0%)	44	NA	NA
WP_005013747.1|2224040_2224991_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|2225089_2226040_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930782.1|2226239_2227325_+	AI-2E family transporter	NA	NA	NA	NA	NA
WP_003810400.1|2227340_2228102_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_170954295.1|2228098_2229058_-	ATP-binding cassette domain-containing protein	NA	A0A2H4PQG7	Staphylococcus_phage	33.6	1.7e-23
WP_010930780.1|2229120_2229621_-	N-acetyltransferase	NA	NA	NA	NA	NA
WP_010930779.1|2229653_2230397_-	sulfite exporter TauE/SafE family protein	NA	NA	NA	NA	NA
WP_010930778.1|2230492_2230732_-	membrane protein	NA	NA	NA	NA	NA
WP_010930777.1|2230745_2230898_-	lipoprotein	NA	NA	NA	NA	NA
WP_010930776.1|2230983_2232474_-	cytochrome c oxidase accessory protein CcoG	NA	NA	NA	NA	NA
WP_010930775.1|2232565_2233504_-	cytochrome-c oxidase, cbb3-type subunit III	NA	NA	NA	NA	NA
WP_003818560.1|2233500_2233677_-	cytochrome oxidase	NA	NA	NA	NA	NA
WP_003810383.1|2233679_2234342_-	cytochrome-c oxidase, cbb3-type subunit II	NA	NA	NA	NA	NA
WP_003810379.1|2235963_2236107_-	cbb3-type cytochrome oxidase assembly protein CcoS	NA	NA	NA	NA	NA
WP_010930774.1|2236103_2237078_-	membrane protein	NA	NA	NA	NA	NA
WP_005012067.1|2237244_2238195_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930773.1|2238191_2239466_-	adenosylmethionine--8-amino-7-oxononanoate transaminase	NA	A0A1V0SKB7	Klosneuvirus	28.9	9.6e-14
WP_010930772.1|2239569_2240763_+	8-amino-7-oxononanoate synthase	NA	NA	NA	NA	NA
WP_010930771.1|2240759_2241413_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_010930770.1|2241409_2242846_+	dethiobiotin synthase	NA	NA	NA	NA	NA
WP_010930769.1|2242833_2243193_+	CidA/LrgA family protein	NA	NA	NA	NA	NA
WP_162268681.1|2244007_2244148_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|2244165_2245116_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930768.1|2246161_2248027_-	sigma-54-dependent Fis family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930767.1|2248284_2249805_+	aldehyde dehydrogenase	NA	NA	NA	NA	NA
WP_003816959.1|2249892_2250543_-	NAD(P)H-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010930766.1|2251491_2252787_+	DUF445 domain-containing protein	NA	NA	NA	NA	NA
WP_010930765.1|2252808_2253693_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930764.1|2253791_2254667_+	PhzF family phenazine biosynthesis protein	NA	NA	NA	NA	NA
WP_003816964.1|2254656_2255013_-	DUF1428 domain-containing protein	NA	NA	NA	NA	NA
WP_010930763.1|2255143_2256118_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003812228.1|2256247_2256427_-	DUF3008 family protein	NA	NA	NA	NA	NA
WP_029443822.1|2256524_2257049_+	DUF302 domain-containing protein	NA	NA	NA	NA	NA
WP_010930761.1|2257059_2257896_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003816971.1|2258008_2258380_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010930760.1|2258376_2258928_+	SRPBCC family protein	NA	NA	NA	NA	NA
WP_003816975.1|2258943_2260635_-	STAS domain-containing protein	NA	A0A2H4J153	uncultured_Caudovirales_phage	27.3	5.0e-42
WP_003816977.1|2260683_2261364_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_014905663.1|2261611_2262076_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930758.1|2262245_2263175_+	ZIP family metal transporter	NA	NA	NA	NA	NA
WP_019247659.1|2263187_2263835_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023997035.1|2263908_2265726_-	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	27.4	2.3e-37
WP_005012067.1|2265809_2266760_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929577.1|2267412_2268363_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 18
NZ_CP010843	Bordetella pertussis strain H542 chromosome, complete genome	4103349	2298136	2362505	4103349	transposase	Vibrio_phage(20.0%)	51	NA	NA
WP_005013747.1|2298136_2299087_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005015810.1|2299308_2300259_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023852887.1|2300357_2301323_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930740.1|2301460_2302360_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930739.1|2304954_2306442_+	hydroxymethylglutaryl-CoA synthase family protein	NA	NA	NA	NA	NA
WP_014486081.1|2306452_2307649_+	acetyl-CoA acetyltransferase	NA	NA	NA	NA	NA
WP_003816680.1|2307721_2309041_+	AMP-binding protein	NA	NA	NA	NA	NA
WP_010930737.1|2309037_2309913_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_010930736.1|2309943_2311092_-	CoA transferase	NA	NA	NA	NA	NA
WP_010930735.1|2311109_2311424_-	2Fe-2S iron-sulfur cluster binding domain-containing protein	NA	NA	NA	NA	NA
WP_003816687.1|2311445_2312168_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_003816690.1|2312167_2312986_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003816691.1|2312990_2313518_-	aromatic-ring-hydroxylating dioxygenase subunit beta	NA	NA	NA	NA	NA
WP_010930733.1|2313523_2314780_-	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA	NA
WP_010930732.1|2315138_2316278_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930731.1|2316355_2317228_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010930730.1|2318098_2319049_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930729.1|2319008_2319644_-	membrane protein	NA	NA	NA	NA	NA
WP_010930728.1|2320003_2321326_-	isocitrate lyase	NA	NA	NA	NA	NA
WP_010930727.1|2321644_2322466_+	NADPH-dependent 7-cyano-7-deazaguanine reductase QueF	NA	A0A2I7SAX1	Vibrio_phage	37.6	4.1e-42
WP_003810356.1|2323890_2324463_-	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	NA	NA	NA	NA	NA
WP_010930726.1|2324502_2326332_-	excinuclease ABC subunit UvrC	NA	NA	NA	NA	NA
WP_010930725.1|2326294_2327353_-	beta-N-acetylhexosaminidase	NA	NA	NA	NA	NA
WP_010930724.1|2327390_2327852_-	holo-ACP synthase	NA	NA	NA	NA	NA
WP_003810344.1|2327936_2328683_-	pyridoxine 5'-phosphate synthase	NA	NA	NA	NA	NA
WP_019247651.1|2330173_2333404_-	multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_019248531.1|2333470_2334802_-	efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
WP_010930721.1|2335054_2335429_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010930720.1|2335531_2336710_-	patatin-like phospholipase family protein	NA	NA	NA	NA	NA
WP_003810329.1|2336720_2337311_-	DUF4136 domain-containing protein	NA	NA	NA	NA	NA
WP_003818535.1|2337421_2338228_+	TOBE domain-containing protein	NA	NA	NA	NA	NA
WP_010930719.1|2338253_2339048_-	ABC transporter ATP-binding protein	NA	A0A1V0SE00	Indivirus	25.7	5.1e-05
WP_010930718.1|2340048_2341023_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003818533.1|2341181_2341694_-	superoxide dismutase family protein	NA	Q9MC02	Salmonella_phage	52.3	1.8e-43
WP_003818532.1|2341850_2342822_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930717.1|2344566_2345373_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010930716.1|2345369_2346671_-	malonyl-CoA decarboxylase family protein	NA	NA	NA	NA	NA
WP_010930715.1|2346621_2347386_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930714.1|2347499_2348270_-	spermidine synthase	NA	NA	NA	NA	NA
WP_010930713.1|2348354_2349542_-	acetyl-CoA C-acyltransferase family protein	NA	NA	NA	NA	NA
WP_003818524.1|2349614_2349989_-	tautomerase family protein	NA	NA	NA	NA	NA
WP_003810308.1|2350089_2351352_-	glycine betaine/L-proline ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	36.6	6.8e-28
WP_003810306.1|2351348_2352206_-	proline/glycine betaine ABC transporter permease	NA	NA	NA	NA	NA
WP_003818523.1|2352378_2353380_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929591.1|2353831_2354782_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930712.1|2356297_2357497_+	multidrug effflux MFS transporter	NA	NA	NA	NA	NA
WP_003810297.1|2357865_2358102_+	50S ribosomal protein L28	NA	NA	NA	NA	NA
WP_010930711.1|2358165_2358333_+	50S ribosomal protein L33	NA	NA	NA	NA	NA
WP_010930710.1|2358446_2360252_-	STAS domain-containing protein	NA	A0A2H4J153	uncultured_Caudovirales_phage	27.5	2.2e-19
WP_077069014.1|2360505_2361456_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931070.1|2361554_2362505_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 19
NZ_CP010843	Bordetella pertussis strain H542 chromosome, complete genome	4103349	2526966	2585210	4103349	transposase,tRNA	Planktothrix_phage(28.57%)	53	NA	NA
WP_005012067.1|2526966_2527917_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930388.1|2528396_2529053_-	phosphoribosylanthranilate isomerase	NA	NA	NA	NA	NA
WP_010930387.1|2529067_2530735_-	TRAP transporter large permease subunit	NA	NA	NA	NA	NA
WP_010930386.1|2530737_2531367_-	TRAP transporter small permease subunit	NA	NA	NA	NA	NA
WP_014486072.1|2531578_2532673_-	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930384.1|2532817_2533630_-|tRNA	tRNA pseudouridine(38-40) synthase TruA	tRNA	NA	NA	NA	NA
WP_023853502.1|2533633_2535337_-	FimV N-terminal domain protein	NA	NA	NA	NA	NA
WP_010930382.1|2535387_2536518_-	aspartate-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
WP_010930381.1|2536704_2537781_-	3-isopropylmalate dehydrogenase	NA	NA	NA	NA	NA
WP_010930380.1|2537862_2538513_-	3-isopropylmalate dehydratase small subunit	NA	NA	NA	NA	NA
WP_010930379.1|2538527_2539931_-	3-isopropylmalate dehydratase large subunit	NA	NA	NA	NA	NA
WP_004567445.1|2540214_2541033_-	substrate-binding domain-containing protein	NA	NA	NA	NA	NA
WP_010930378.1|2541029_2541734_-	phosphate ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.0	2.6e-13
WP_010930377.1|2542633_2543749_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_004567447.1|2543782_2544157_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930376.1|2544179_2545337_-	formate dehydrogenase subunit gamma	NA	NA	NA	NA	NA
WP_003812666.1|2545349_2545583_-	lipoprotein	NA	NA	NA	NA	NA
WP_019247523.1|2546217_2549187_-	formate dehydrogenase subunit alpha	NA	NA	NA	NA	NA
WP_023853518.1|2549201_2549411_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019248667.1|2549562_2550192_-	molecular chaperone TorD family protein	NA	NA	NA	NA	NA
WP_010930373.1|2550188_2552279_-	4Fe-4S binding protein	NA	NA	NA	NA	NA
WP_010930372.1|2552302_2552983_-	DUF3306 domain-containing protein	NA	NA	NA	NA	NA
WP_003820494.1|2552979_2553540_-	DUF3305 domain-containing protein	NA	NA	NA	NA	NA
WP_004567450.1|2553546_2554644_-	iron-sulfur cluster carrier protein ApbC	NA	NA	NA	NA	NA
WP_010930371.1|2554796_2555390_+	molybdenum cofactor guanylyltransferase MobA	NA	NA	NA	NA	NA
WP_010930370.1|2555386_2556679_+	molybdopterin molybdotransferase MoeA	NA	NA	NA	NA	NA
WP_003812685.1|2556692_2557235_+	molybdopterin-guanine dinucleotide biosynthesis protein B	NA	NA	NA	NA	NA
WP_010930369.1|2557244_2558081_-	M48 family metallopeptidase	NA	NA	NA	NA	NA
WP_003820487.1|2558114_2559176_-	chorismate synthase	NA	A0A291AU41	Pandoravirus	42.8	2.9e-80
WP_019247210.1|2559217_2560270_-	EAL domain-containing protein	NA	NA	NA	NA	NA
WP_019247209.1|2560285_2560588_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012808.1|2560729_2561680_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930368.1|2561858_2563553_+	iron ABC transporter permease	NA	NA	NA	NA	NA
WP_003809599.1|2563549_2564635_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	37.7	6.4e-27
WP_010930367.1|2564682_2565582_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003809593.1|2565592_2566237_+	histidine phosphatase family protein	NA	NA	NA	NA	NA
WP_010930366.1|2567258_2570501_-	carbamoyl-phosphate synthase large subunit	NA	NA	NA	NA	NA
WP_023852833.1|2570511_2571666_-	glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit	NA	R4TGJ8	Halovirus	35.4	3.3e-53
WP_010930364.1|2571892_2572855_+	transaldolase	NA	H6WFR1	Cyanophage	29.2	7.5e-11
WP_005013747.1|2572953_2573904_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929577.1|2574002_2574953_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930362.1|2574962_2575652_-	VIT family protein	NA	NA	NA	NA	NA
WP_003811741.1|2575711_2576149_-	PaaI family thioesterase	NA	NA	NA	NA	NA
WP_003811743.1|2576194_2577088_-	3-hydroxyisobutyrate dehydrogenase	NA	NA	NA	NA	NA
WP_003811746.1|2577135_2578308_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003811748.1|2578304_2579459_-	acyl-CoA dehydrogenase family protein	NA	NA	NA	NA	NA
WP_003811750.1|2579655_2580006_-	RnfH family protein	NA	NA	NA	NA	NA
WP_003811752.1|2579995_2580430_-	type II toxin-antitoxin system RatA family toxin	NA	NA	NA	NA	NA
WP_010930800.1|2580446_2581397_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811754.1|2581544_2582012_+	SsrA-binding protein SmpB	NA	W5RAM5	Staphylococcus_phage	45.1	6.2e-27
WP_010930360.1|2581992_2583150_-	GGDEF domain-containing protein	NA	A0A127AWB9	Bacillus_phage	36.2	2.3e-14
WP_003811759.1|2583215_2584142_-	paraslipin	NA	NA	NA	NA	NA
WP_005012067.1|2584259_2585210_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 20
NZ_CP010843	Bordetella pertussis strain H542 chromosome, complete genome	4103349	2627489	2693989	4103349	transposase	uncultured_Caudovirales_phage(40.0%)	56	NA	NA
WP_005012067.1|2627489_2628440_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811850.1|2628809_2629382_+	flagellar basal body-associated protein FliL	NA	NA	NA	NA	NA
WP_003811852.1|2629384_2630395_+	flagellar motor switch protein FliM	NA	NA	NA	NA	NA
WP_010930335.1|2630387_2630888_+	flagellar motor switch protein FliN	NA	NA	NA	NA	NA
WP_003811855.1|2630898_2631240_+	flagellar biosynthetic protein FliO	NA	NA	NA	NA	NA
WP_015041547.1|2631251_2632043_+	flagellar type III secretion system pore protein FliP	NA	NA	NA	NA	NA
WP_003811859.1|2632059_2632329_+	flagellar biosynthesis protein FliQ	NA	NA	NA	NA	NA
WP_010930333.1|2632351_2633140_+	flagellar biosynthetic protein FliR	NA	NA	NA	NA	NA
WP_010929632.1|2633186_2634203_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_014486070.1|2634419_2635862_-	PAS domain-containing protein	NA	A0A1B0V854	Salmonella_phage	41.8	1.0e-35
WP_010930332.1|2636040_2637660_-	Tar ligand binding domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	45.3	1.5e-08
WP_010930331.1|2637780_2639601_-	Tar ligand binding domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	52.6	6.4e-11
WP_010930330.1|2639679_2641212_-	flagellar hook-associated protein FlgL	NA	NA	NA	NA	NA
WP_010930329.1|2641245_2642892_-	flagellar hook-associated protein FlgK	NA	NA	NA	NA	NA
WP_010930328.1|2642961_2643984_-	flagellar assembly peptidoglycan hydrolase FlgJ	NA	A0A088F6W1	Sulfitobacter_phage	31.4	1.9e-12
WP_010930327.1|2644001_2645135_-	flagellar basal body P-ring protein FlgI	NA	NA	NA	NA	NA
WP_010930326.1|2645137_2645827_-	flagellar basal body L-ring protein FlgH	NA	NA	NA	NA	NA
WP_010930325.1|2645826_2646612_-	flagellar basal-body rod protein FlgG	NA	NA	NA	NA	NA
WP_003817181.1|2646655_2647420_-	flagellar basal body rod protein FlgF	NA	NA	NA	NA	NA
WP_003817180.1|2647458_2648880_-	flagellar hook-basal body complex protein	NA	NA	NA	NA	NA
WP_010930324.1|2648945_2649650_-	flagellar basal body rod modification protein FlgD	NA	NA	NA	NA	NA
WP_003817176.1|2649697_2650117_-	flagellar basal body rod protein FlgC	NA	NA	NA	NA	NA
WP_010930323.1|2650129_2650537_-	flagellar basal body rod protein FlgB	NA	NA	NA	NA	NA
WP_010930322.1|2650720_2651431_+	flagellar basal body P-ring formation protein FlgA	NA	NA	NA	NA	NA
WP_003817172.1|2651557_2651848_+	flagellar biosynthesis anti-sigma factor FlgM	NA	NA	NA	NA	NA
WP_003817170.1|2651865_2652348_+	flagellar protein FlgN	NA	NA	NA	NA	NA
WP_010930321.1|2656853_2658008_-	flagellar type III secretion system protein FlhB	NA	NA	NA	NA	NA
WP_010931363.1|2658313_2659330_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010930319.1|2659576_2660365_+	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003812020.1|2660431_2661112_+	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003812022.1|2661108_2661879_+	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	39.1	9.8e-30
WP_010930208.1|2661977_2662928_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811401.1|2662983_2663901_-	2-dehydropantoate 2-reductase	NA	NA	NA	NA	NA
WP_003811400.1|2663911_2665090_-	mandelate racemase/muconate lactonizing enzyme family protein	NA	NA	NA	NA	NA
WP_010930318.1|2665109_2666105_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003811396.1|2667693_2668302_+	3-isopropylmalate dehydratase small subunit	NA	NA	NA	NA	NA
WP_003811393.1|2668289_2669330_+	LacI family DNA-binding transcriptional regulator	NA	NA	NA	NA	NA
WP_003811391.1|2669347_2670310_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003811389.1|2670306_2671500_-	CoA transferase	NA	NA	NA	NA	NA
WP_010930317.1|2671496_2672294_-	citryl-CoA lyase	NA	NA	NA	NA	NA
WP_014486069.1|2672319_2673306_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930316.1|2673324_2675364_-	acetate--CoA ligase family protein	NA	NA	NA	NA	NA
WP_010930315.1|2675565_2676246_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930314.1|2676259_2677171_-	CoA ester lyase	NA	NA	NA	NA	NA
WP_003811381.1|2677167_2677746_-	NAD(P)H-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010930313.1|2677884_2678790_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930312.1|2678797_2682217_+	TM0106 family RecB-like putative nuclease	NA	NA	NA	NA	NA
WP_010930311.1|2682204_2684805_-	BP1344/BB2830 family autotransporter	NA	NA	NA	NA	NA
WP_003811375.1|2685760_2686393_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003811372.1|2686786_2687545_+	endonuclease/exonuclease/phosphatase family protein	NA	NA	NA	NA	NA
WP_003811370.1|2687541_2688744_+	cardiolipin synthase ClsB	NA	NA	NA	NA	NA
WP_010930208.1|2688931_2689882_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930310.1|2690789_2691935_+	DUF3182 family protein	NA	NA	NA	NA	NA
WP_019247449.1|2691921_2692677_+	alpha/beta fold hydrolase	NA	NA	NA	NA	NA
WP_003811361.1|2692793_2692973_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930208.1|2693038_2693989_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 21
NZ_CP010843	Bordetella pertussis strain H542 chromosome, complete genome	4103349	2892326	2965650	4103349	transposase,tRNA,protease	Catovirus(22.22%)	52	NA	NA
WP_010930211.1|2892326_2893682_-|tRNA	tryptophan--tRNA ligase	tRNA	NA	NA	NA	NA
WP_003813618.1|2895160_2895883_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930207.1|2895937_2896921_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_005012067.1|2897050_2898001_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003813621.1|2897997_2898900_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930206.1|2898987_2899746_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_023853245.1|2899758_2900850_-	cell division protein ZapE	NA	NA	NA	NA	NA
WP_003813626.1|2900947_2902375_-	dihydrolipoyl dehydrogenase	NA	A0A2K5B2C5	Erysipelothrix_phage	28.1	2.1e-41
WP_010930204.1|2902604_2903819_-	2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase	NA	NA	NA	NA	NA
WP_003813631.1|2903864_2906735_-	2-oxoglutarate dehydrogenase E1 component	NA	NA	NA	NA	NA
WP_010930202.1|2909145_2909634_-	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930201.1|2909759_2912456_+	alpha-ketoglutarate dehydrogenase	NA	NA	NA	NA	NA
WP_010930200.1|2912610_2914893_+	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
WP_019248935.1|2915065_2915689_+	serotype 2 fimbrial subunit	NA	NA	NA	NA	NA
WP_010930198.1|2915787_2916738_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812405.1|2916784_2917339_-	transcription elongation factor GreB	NA	NA	NA	NA	NA
WP_003816844.1|2917406_2918252_-	PHP domain-containing protein	NA	NA	NA	NA	NA
WP_019248398.1|2918321_2919290_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_023995083.1|2919289_2920153_-	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
WP_010930196.1|2922985_2926912_-	inverse autotransporter beta-barrel domain-containing protein	NA	NA	NA	NA	NA
WP_010930194.1|2927647_2930878_-	autotransporter SphB3	NA	NA	NA	NA	NA
WP_010928340.1|2931159_2931987_-	TatD family hydrolase	NA	NA	NA	NA	NA
WP_003812422.1|2932020_2932716_-	lipoprotein-releasing ABC transporter ATP-binding protein LolD	NA	G9BWD6	Planktothrix_phage	38.6	7.0e-35
WP_019247537.1|2932708_2933989_-	lipoprotein-releasing ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_010930192.1|2933998_2934976_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930191.1|2934957_2936658_+	single-stranded-DNA-specific exonuclease RecJ	NA	A7KV88	Bacillus_phage	28.3	1.3e-50
WP_010926448.1|2936760_2937864_+	peptide chain release factor 2	NA	NA	NA	NA	NA
WP_010926447.1|2937894_2938650_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930190.1|2938656_2940177_+|tRNA	lysine--tRNA ligase	tRNA	A0A1V0SAC0	Catovirus	36.0	1.2e-82
WP_010930189.1|2940219_2940522_+	membrane protein	NA	NA	NA	NA	NA
WP_003812436.1|2940518_2941151_-	TetR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930188.1|2941229_2943095_-	long-chain fatty acid--CoA ligase	NA	A0A1V0SBX8	Catovirus	23.3	9.3e-50
WP_020699602.1|2943091_2943886_-	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	23.3	1.2e-11
WP_010930186.1|2943914_2945030_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930185.1|2945934_2946813_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010930184.1|2946812_2947637_-	ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	22.7	1.0e-08
WP_010929591.1|2947804_2948755_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930183.1|2948967_2951817_+	EAL domain-containing protein	NA	NA	NA	NA	NA
WP_010930182.1|2951798_2952527_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_019248549.1|2952667_2954131_-	YdiU family protein	NA	A0A075BSJ0	Microcystis_phage	32.5	1.7e-43
WP_010930180.1|2954127_2954499_-	DUF2069 domain-containing protein	NA	NA	NA	NA	NA
WP_003812701.1|2954516_2955830_+	YihY family inner membrane protein	NA	NA	NA	NA	NA
WP_003812703.1|2955866_2956325_+	CBS domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|2956437_2957388_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930178.1|2957384_2958398_-|tRNA	tRNA dihydrouridine(20/20a) synthase DusA	tRNA	NA	NA	NA	NA
WP_003812707.1|2958537_2959524_+	homoserine kinase	NA	NA	NA	NA	NA
WP_161633091.1|2959882_2960590_-	DUF192 domain-containing protein	NA	NA	NA	NA	NA
WP_010929591.1|2961170_2962121_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003809618.1|2962272_2962875_-	YhbY family RNA-binding protein	NA	NA	NA	NA	NA
WP_010930175.1|2962893_2963526_+	RlmE family RNA methyltransferase	NA	NA	NA	NA	NA
WP_162096758.1|2963570_2963822_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930174.1|2963763_2965650_+|protease	ATP-dependent zinc metalloprotease FtsH	protease	M4QMW8	Micromonas_pusilla_virus	41.5	1.4e-109
>prophage 22
NZ_CP010843	Bordetella pertussis strain H542 chromosome, complete genome	4103349	2977375	3026046	4103349	transposase,holin,tRNA	uncultured_Mediterranean_phage(60.0%)	42	NA	NA
WP_005013747.1|2977375_2978326_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003809441.1|2978352_2978817_-	barstar family protein	NA	NA	NA	NA	NA
WP_014486065.1|2980023_2982312_-	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
WP_010930165.1|2982428_2983301_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930164.1|2983343_2984498_+	pyridoxal phosphate-dependent aminotransferase	NA	NA	NA	NA	NA
WP_010930163.1|2984532_2985363_-	lytic transglycosylase domain-containing protein	NA	NA	NA	NA	NA
WP_023853525.1|2985446_2986991_+	4-hydroxy-3-polyprenylbenzoate decarboxylase	NA	NA	NA	NA	NA
WP_010930161.1|2987033_2987393_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003819794.1|2987394_2987808_-|holin	phage holin family protein	holin	NA	NA	NA	NA
WP_003809432.1|2987848_2988166_-	DUF883 domain-containing protein	NA	NA	NA	NA	NA
WP_003809431.1|2988250_2988967_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930160.1|2989230_2990652_+	uroporphyrinogen-III C-methyltransferase	NA	NA	NA	NA	NA
WP_019248433.1|2990718_2993466_-	pertactin autotransporter	NA	NA	NA	NA	NA
WP_023853536.1|2993798_2994815_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010930157.1|2995150_2995792_-	uracil phosphoribosyltransferase	NA	NA	NA	NA	NA
WP_003809423.1|2995882_2997319_-	D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase	NA	NA	NA	NA	NA
WP_023853534.1|2997476_2998550_+|tRNA	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	tRNA	NA	NA	NA	NA
WP_010930155.1|2998546_2999683_+|tRNA	tRNA guanosine(34) transglycosylase Tgt	tRNA	A0A1B1IVQ4	uncultured_Mediterranean_phage	44.4	1.9e-85
WP_003809416.1|2999827_3000172_+	preprotein translocase subunit YajC	NA	A0A1B1IVR5	uncultured_Mediterranean_phage	40.4	1.0e-10
WP_010930154.1|3000238_3002119_+	protein translocase subunit SecD	NA	NA	NA	NA	NA
WP_003809411.1|3002168_3003104_+	protein translocase subunit SecF	NA	A0A1B1IVP7	uncultured_Mediterranean_phage	35.5	3.0e-41
WP_010931363.1|3003436_3004453_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_015041211.1|3005390_3006818_+|tRNA	tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB	tRNA	NA	NA	NA	NA
WP_010930151.1|3006814_3007837_+	PhoH family protein	NA	A0A0S0MVD6	Pseudomonas_phage	45.4	8.7e-50
WP_003809396.1|3007826_3008300_+	rRNA maturation RNase YbeY	NA	NA	NA	NA	NA
WP_010930149.1|3008440_3009328_+	CBS domain-containing protein	NA	NA	NA	NA	NA
WP_014486064.1|3009324_3010968_+	apolipoprotein N-acyltransferase	NA	NA	NA	NA	NA
WP_010930148.1|3010964_3012014_-	aldo/keto reductase	NA	NA	NA	NA	NA
WP_010931363.1|3012802_3013819_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003817162.1|3013918_3014551_-	protein phosphatase CheZ	NA	NA	NA	NA	NA
WP_003811911.1|3014559_3014949_-	chemotaxis response regulator CheY	NA	Q56AR1	Bacillus_thuringiensis_phage	33.3	5.7e-10
WP_010930146.1|3015001_3016054_-	chemotaxis response regulator protein-glutamate methylesterase	NA	NA	NA	NA	NA
WP_023995045.1|3016917_3017682_-	Tar ligand binding domain-containing protein	NA	NA	NA	NA	NA
WP_003811919.1|3017755_3018256_-	chemotaxis protein CheW	NA	NA	NA	NA	NA
WP_010930144.1|3018270_3020328_-	chemotaxis protein CheA	NA	NA	NA	NA	NA
WP_019247393.1|3020354_3020648_-	response regulator	NA	NA	NA	NA	NA
WP_003817154.1|3020749_3021697_-	flagellar motor protein MotB	NA	NA	NA	NA	NA
WP_003811927.1|3021709_3022585_-	flagellar motor stator protein MotA	NA	NA	NA	NA	NA
WP_003811929.1|3022705_3023266_-	flagellar transcriptional regulator FlhC	NA	NA	NA	NA	NA
WP_010930143.1|3023300_3023624_-	flagellar transcriptional regulator FlhD	NA	NA	NA	NA	NA
WP_003811933.1|3024059_3024797_+	RNA polymerase sigma factor FliA	NA	NA	NA	NA	NA
WP_005012067.1|3025095_3026046_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 23
NZ_CP010843	Bordetella pertussis strain H542 chromosome, complete genome	4103349	3034256	3096411	4103349	transposase	Erysipelothrix_phage(20.0%)	46	NA	NA
WP_023853531.1|3034256_3035390_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930137.1|3035493_3036135_+	glutathione transferase	NA	NA	NA	NA	NA
WP_010930136.1|3036289_3038638_+	DUF3141 domain-containing protein	NA	NA	NA	NA	NA
WP_003809454.1|3038634_3039573_+	phosphate acetyltransferase	NA	NA	NA	NA	NA
WP_010930135.1|3039598_3040789_+	acetate kinase	NA	NA	NA	NA	NA
WP_010930134.1|3040785_3041559_+	enoyl-ACP reductase FabI	NA	NA	NA	NA	NA
WP_010930133.1|3041588_3042782_-	phosphoglycerate kinase	NA	NA	NA	NA	NA
WP_010930132.1|3042899_3043910_-	type I glyceraldehyde-3-phosphate dehydrogenase	NA	NA	NA	NA	NA
WP_010930131.1|3043927_3045964_-	transketolase	NA	NA	NA	NA	NA
WP_010930130.1|3046158_3046899_+	16S rRNA (uracil(1498)-N(3))-methyltransferase	NA	NA	NA	NA	NA
WP_010929969.1|3046997_3047948_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929584.1|3048046_3048997_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003817151.1|3049039_3050215_+	FliC/FljB family flagellin	NA	NA	NA	NA	NA
WP_010930129.1|3050436_3052227_-	dihydrolipoyl dehydrogenase	NA	A0A2K5B2C5	Erysipelothrix_phage	25.2	2.4e-39
WP_010930128.1|3052239_3053901_-	dihydrolipoyllysine-residue acetyltransferase	NA	NA	NA	NA	NA
WP_010930127.1|3053913_3056619_-	pyruvate dehydrogenase (acetyl-transferring), homodimeric type	NA	NA	NA	NA	NA
WP_003817147.1|3056911_3058666_+	PAS domain S-box protein	NA	NA	NA	NA	NA
WP_010930126.1|3058662_3059289_+	response regulator transcription factor	NA	NA	NA	NA	NA
WP_003811948.1|3059285_3060137_+	bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD	NA	A0A249XZQ2	Enterococcus_phage	39.8	2.1e-33
WP_019248379.1|3060212_3062327_+	M3 family metallopeptidase	NA	NA	NA	NA	NA
WP_010930124.1|3062513_3063128_+	SCO family protein	NA	NA	NA	NA	NA
WP_010930123.1|3063273_3063525_+	GlsB/YeaQ/YmgE family stress response membrane protein	NA	NA	NA	NA	NA
WP_014486063.1|3063594_3064977_-	efflux transporter outer membrane subunit	NA	NA	NA	NA	NA
WP_010930121.1|3064973_3068153_-	efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_029443805.1|3068960_3069878_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930119.1|3069929_3070661_-	rRNA pseudouridine synthase	NA	NA	NA	NA	NA
WP_010926548.1|3070720_3071293_+	chorismate lyase	NA	NA	NA	NA	NA
WP_010929632.1|3072801_3073818_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010930118.1|3073955_3075005_-	NADP(H)-dependent aldo-keto reductase	NA	NA	NA	NA	NA
WP_005012067.1|3075109_3076060_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003813314.1|3076155_3076881_-	CoA pyrophosphatase	NA	NA	NA	NA	NA
WP_003813315.1|3077091_3077472_-	50S ribosomal protein L19	NA	NA	NA	NA	NA
WP_014905652.1|3077777_3078650_+	EamA family transporter	NA	NA	NA	NA	NA
WP_023852686.1|3078657_3079038_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023852693.1|3079191_3080466_-	PA0069 family radical SAM protein	NA	NA	NA	NA	NA
WP_010930113.1|3081953_3082862_-	sulfate adenylyltransferase subunit CysD	NA	NA	NA	NA	NA
WP_010930112.1|3083659_3084724_-	sulfate ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	30.3	3.8e-24
WP_170954292.1|3086560_3087562_-	sulfate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003813333.1|3087784_3088426_-	peroxiredoxin	NA	NA	NA	NA	NA
WP_003821527.1|3088508_3090335_-	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_010930111.1|3090578_3091508_-	electron transfer flavoprotein subunit alpha	NA	NA	NA	NA	NA
WP_010930110.1|3091507_3092257_-	electron transfer flavoprotein subunit beta/FixA family protein	NA	NA	NA	NA	NA
WP_003821521.1|3092328_3093243_-	histone deacetylase family protein	NA	A0A2K9KZC4	Tupanvirus	34.7	9.8e-45
WP_010930108.1|3093262_3094408_+	lytic murein transglycosylase B	NA	NA	NA	NA	NA
WP_014486062.1|3094468_3095380_-	cysteine synthase CysM	NA	A0A1X9I5K7	Streptococcus_phage	38.8	8.0e-47
WP_005012067.1|3095460_3096411_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 24
NZ_CP010843	Bordetella pertussis strain H542 chromosome, complete genome	4103349	3115833	3178914	4103349	transposase,holin	Bacillus_phage(25.0%)	54	NA	NA
WP_005012808.1|3115833_3116784_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_004566317.1|3116913_3117306_+	type II toxin-antitoxin system HicB family antitoxin	NA	A0A0R6PJ17	Moraxella_phage	45.0	4.8e-25
WP_003821497.1|3117582_3118494_-	LysR family transcriptional regulator	NA	Q6JIH3	Burkholderia_virus	27.6	4.4e-05
WP_010930088.1|3118618_3119593_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_005012067.1|3119589_3120540_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003810865.1|3120638_3121724_-	DNA polymerase IV	NA	NA	NA	NA	NA
WP_010930072.1|3121821_3122232_+	PaaI family thioesterase	NA	NA	NA	NA	NA
WP_003810859.1|3122847_3124761_+	S9 family peptidase	NA	NA	NA	NA	NA
WP_010930071.1|3124896_3127509_+	PBP1A family penicillin-binding protein	NA	NA	NA	NA	NA
WP_019248496.1|3127510_3128245_-	metallophosphoesterase	NA	A0A2H4J0P0	uncultured_Caudovirales_phage	49.2	1.9e-62
WP_003810851.1|3128408_3129590_+	PepSY domain-containing protein	NA	NA	NA	NA	NA
WP_003810850.1|3129586_3129799_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930069.1|3129795_3130776_-	aldo/keto reductase	NA	NA	NA	NA	NA
WP_010930068.1|3130821_3131649_-	aldo/keto reductase	NA	A0A2H4PQR8	Staphylococcus_phage	47.4	1.7e-67
WP_023852913.1|3131798_3133613_+	ABC transporter ATP-binding protein/permease	NA	W8CYL7	Bacillus_phage	27.9	5.7e-44
WP_003810840.1|3133667_3134051_+	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA	NA
WP_010930066.1|3134047_3134998_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003810839.1|3135110_3135362_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003810835.1|3135867_3136986_-	mannose-6-phosphate isomerase	NA	NA	NA	NA	NA
WP_003810832.1|3137105_3137318_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930064.1|3137477_3137699_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|3137751_3138702_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930062.1|3139878_3141249_-	acetyl-CoA carboxylase biotin carboxylase subunit	NA	NA	NA	NA	NA
WP_010930061.1|3141281_3142073_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930060.1|3142085_3143141_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_019247557.1|3143166_3144042_-	amidohydrolase	NA	NA	NA	NA	NA
WP_023852826.1|3144147_3144396_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003819989.1|3144430_3145885_-	carboxylase	NA	NA	NA	NA	NA
WP_004568140.1|3145881_3146403_-	acetyl-CoA carboxylase biotin carboxyl carrier protein	NA	NA	NA	NA	NA
WP_010930057.1|3146431_3147784_-	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_029444137.1|3148007_3150896_-	HD domain-containing protein	NA	NA	NA	NA	NA
WP_010930056.1|3153040_3154342_+	phospholipase A	NA	NA	NA	NA	NA
WP_010930055.1|3154356_3155073_-	flagellar brake protein	NA	NA	NA	NA	NA
WP_010930054.1|3155354_3156035_+	DUF3313 domain-containing protein	NA	NA	NA	NA	NA
WP_003809770.1|3156046_3156214_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023852837.1|3156322_3156469_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930052.1|3156562_3157222_-	thiopurine S-methyltransferase	NA	NA	NA	NA	NA
WP_010930051.1|3157620_3159453_+	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	26.4	1.3e-27
WP_005012067.1|3159449_3160400_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814007.1|3161563_3163279_+	acetolactate synthase 3 catalytic subunit	NA	A0A0P0CDR3	Ostreococcus_lucimarinus_virus	30.3	3.1e-60
WP_003814006.1|3163289_3163781_+	acetolactate synthase small subunit	NA	NA	NA	NA	NA
WP_010930015.1|3163853_3164870_+	ketol-acid reductoisomerase	NA	NA	NA	NA	NA
WP_003814004.1|3165037_3165817_+	CDP-diacylglycerol--serine O-phosphatidyltransferase	NA	NA	NA	NA	NA
WP_003814003.1|3165835_3166363_-	lipoprotein	NA	NA	NA	NA	NA
WP_003814002.1|3166656_3166926_+	30S ribosomal protein S15	NA	NA	NA	NA	NA
WP_003821234.1|3167016_3169176_+	polyribonucleotide nucleotidyltransferase	NA	NA	NA	NA	NA
WP_003814000.1|3169296_3170016_+	lipoprotein	NA	NA	NA	NA	NA
WP_005013747.1|3170012_3170963_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003813999.1|3171103_3172321_+	threonine ammonia-lyase	NA	NA	NA	NA	NA
WP_010930016.1|3172314_3172926_-	PIN domain-containing protein	NA	K4HZX4	Acidithiobacillus_phage	32.5	3.3e-12
WP_003813997.1|3173559_3174537_+	NAD(P)H-quinone oxidoreductase	NA	NA	NA	NA	NA
WP_003813996.1|3174680_3175427_+	triose-phosphate isomerase	NA	NA	NA	NA	NA
WP_010930017.1|3175448_3175895_+	preprotein translocase subunit SecG	NA	NA	NA	NA	NA
WP_010930018.1|3176682_3178914_+|holin	choline BCCT transporter BetT	holin	NA	NA	NA	NA
>prophage 25
NZ_CP010843	Bordetella pertussis strain H542 chromosome, complete genome	4103349	3186548	3258561	4103349	transposase,holin	Leptospira_phage(20.0%)	60	NA	NA
WP_023994644.1|3186548_3187565_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003813987.1|3187761_3188586_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_076879542.1|3188663_3189587_-	transcriptional regulator LrhA	NA	NA	NA	NA	NA
WP_010930021.1|3189757_3190909_+	cystathionine beta-lyase	NA	NA	NA	NA	NA
WP_010930022.1|3190912_3191944_+	succinylglutamate desuccinylase/aspartoacylase family protein	NA	NA	NA	NA	NA
WP_010930023.1|3192072_3193044_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003813982.1|3193068_3195153_+	rhodanese-like domain-containing protein	NA	NA	NA	NA	NA
WP_003813981.1|3195219_3196212_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930024.1|3196320_3197655_-	FAD-binding oxidoreductase	NA	NA	NA	NA	NA
WP_010930025.1|3197680_3199693_-	hydantoinase B/oxoprolinase family protein	NA	NA	NA	NA	NA
WP_023853163.1|3199689_3201738_-	hydantoinase/oxoprolinase family protein	NA	NA	NA	NA	NA
WP_010930027.1|3201841_3202489_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003813974.1|3202629_3203124_+	azurin	NA	NA	NA	NA	NA
WP_010926969.1|3203167_3203839_-	transcriptional regulator	NA	NA	NA	NA	NA
WP_010930029.1|3203853_3205347_-	efflux transporter outer membrane subunit	NA	NA	NA	NA	NA
WP_010930030.1|3205343_3208457_-	MexW/MexI family multidrug efflux RND transporter permease subunit	NA	S5VTK5	Leptospira_phage	21.5	4.5e-57
WP_010930031.1|3208469_3209576_-	efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
WP_010930032.1|3209699_3210368_-	transcriptional regulator	NA	NA	NA	NA	NA
WP_005013747.1|3210588_3211539_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003813960.1|3211621_3213580_+|holin	choline BCCT transporter BetT	holin	A0A2I7QNT1	Vibrio_phage	30.3	8.0e-28
WP_010930033.1|3213607_3214309_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019248500.1|3214455_3215271_+	diacylglycerol kinase	NA	NA	NA	NA	NA
WP_003813954.1|3215267_3216083_+	metallophosphoesterase	NA	NA	NA	NA	NA
WP_003813952.1|3216099_3216903_+	phosphatase PAP2 family protein	NA	NA	NA	NA	NA
WP_003813951.1|3216886_3217321_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003813949.1|3217317_3217752_-	PaaI family thioesterase	NA	NA	NA	NA	NA
WP_019247352.1|3217753_3218308_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929591.1|3218325_3219276_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930034.1|3219588_3220746_+	porin	NA	NA	NA	NA	NA
WP_003813943.1|3220934_3221294_+	NADH-quinone oxidoreductase subunit A	NA	NA	NA	NA	NA
WP_003813941.1|3221330_3221807_+	NADH-quinone oxidoreductase subunit B	NA	NA	NA	NA	NA
WP_010926963.1|3221881_3222505_+	NADH-quinone oxidoreductase subunit C	NA	NA	NA	NA	NA
WP_010930035.1|3222507_3223764_+	NADH-quinone oxidoreductase subunit D	NA	NA	NA	NA	NA
WP_003813932.1|3223809_3224304_+	NADH-quinone oxidoreductase subunit NuoE	NA	NA	NA	NA	NA
WP_003813930.1|3224300_3225668_+	NADH-quinone oxidoreductase subunit NuoF	NA	NA	NA	NA	NA
WP_010930036.1|3225683_3228011_+	NADH-quinone oxidoreductase subunit G	NA	NA	NA	NA	NA
WP_003813926.1|3228010_3229084_+	NADH-quinone oxidoreductase subunit NuoH	NA	NA	NA	NA	NA
WP_003813924.1|3229105_3229594_+	NADH-quinone oxidoreductase subunit NuoI	NA	NA	NA	NA	NA
WP_003813921.1|3229611_3230259_+	NADH-quinone oxidoreductase subunit J	NA	NA	NA	NA	NA
WP_003813920.1|3230255_3230564_+	NADH-quinone oxidoreductase subunit NuoK	NA	NA	NA	NA	NA
WP_010930037.1|3230581_3232594_+	NADH-quinone oxidoreductase subunit L	NA	NA	NA	NA	NA
WP_019247436.1|3232590_3234093_+	NADH-quinone oxidoreductase subunit M	NA	NA	NA	NA	NA
WP_019248505.1|3234103_3235588_+	NADH-quinone oxidoreductase subunit NuoN	NA	NA	NA	NA	NA
WP_003813915.1|3235604_3235934_+	DUF2818 family protein	NA	NA	NA	NA	NA
WP_010930039.1|3236234_3238466_+	TonB-dependent siderophore receptor	NA	NA	NA	NA	NA
WP_003813909.1|3238677_3240948_+	TonB-dependent siderophore receptor	NA	NA	NA	NA	NA
WP_010930041.1|3241060_3241579_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_010930042.1|3241588_3242365_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_003813904.1|3242361_3244152_-	acetolactate synthase large subunit	NA	A0A0P0YLY7	Yellowstone_lake_phycodnavirus	26.1	2.0e-25
WP_010930044.1|3244211_3245192_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930045.1|3245329_3246247_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930046.1|3246375_3247236_-	phosphoserine phosphatase SerB	NA	NA	NA	NA	NA
WP_010926959.1|3247271_3250727_-	transcription-repair coupling factor	NA	NA	NA	NA	NA
WP_003813895.1|3250756_3251440_+	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	NA	NA	NA	NA	NA
WP_003813893.1|3251436_3251925_+	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	NA	NA	NA	NA	NA
WP_041337087.1|3252023_3252974_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003813068.1|3252970_3253990_-	class 1 fructose-bisphosphatase	NA	A0A1V0SKX4	Klosneuvirus	35.7	1.5e-49
WP_010930049.1|3253999_3256708_-	aminopeptidase N	NA	A0A0P0IY26	Acinetobacter_phage	24.0	2.8e-15
WP_010930050.1|3256855_3257512_+	DUF4136 domain-containing protein	NA	NA	NA	NA	NA
WP_005013747.1|3257610_3258561_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 26
NZ_CP010843	Bordetella pertussis strain H542 chromosome, complete genome	4103349	3310154	3353061	4103349	transposase	Planktothrix_phage(50.0%)	34	NA	NA
WP_005012808.1|3310154_3311105_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929985.1|3311206_3311635_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010929984.1|3311707_3313903_+	DUF1156 domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|3314124_3315075_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023852739.1|3315034_3315559_-	sigma-70 family RNA polymerase sigma factor	NA	NA	NA	NA	NA
WP_003814467.1|3315690_3316662_+	FecR family protein	NA	NA	NA	NA	NA
WP_010929983.1|3316781_3319226_+	TonB-dependent siderophore receptor	NA	NA	NA	NA	NA
WP_010929982.1|3319241_3319832_-	polyisoprenoid-binding protein	NA	NA	NA	NA	NA
WP_010929591.1|3320075_3321026_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814462.1|3321183_3322449_-	saccharopine dehydrogenase family protein	NA	NA	NA	NA	NA
WP_003814461.1|3322482_3323580_-	carboxynorspermidine decarboxylase	NA	NA	NA	NA	NA
WP_005013747.1|3324234_3325185_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814459.1|3325185_3325755_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929980.1|3325822_3326638_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929979.1|3326804_3328424_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929978.1|3328502_3329444_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010929977.1|3329443_3330328_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010927038.1|3330331_3331984_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.8	6.0e-16
WP_010929976.1|3332023_3333421_+	amidase family protein	NA	NA	NA	NA	NA
WP_019247242.1|3333462_3334842_+	aminotransferase class III-fold pyridoxal phosphate-dependent enzyme	NA	NA	NA	NA	NA
WP_003814443.1|3334881_3335100_-	DUF1059 domain-containing protein	NA	NA	NA	NA	NA
WP_003814441.1|3335440_3336313_+	oxaloacetate decarboxylase	NA	NA	NA	NA	NA
WP_005012067.1|3336472_3337423_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814437.1|3338154_3338532_+	4a-hydroxytetrahydrobiopterin dehydratase	NA	NA	NA	NA	NA
WP_003814436.1|3338516_3339218_-	membrane protein	NA	NA	NA	NA	NA
WP_010931409.1|3339361_3340054_-	nucleotidyltransferase family protein	NA	NA	NA	NA	NA
WP_010931410.1|3340053_3341157_-	phosphotransferase	NA	NA	NA	NA	NA
WP_010931411.1|3341266_3343639_+	LPS-assembly protein LptD	NA	NA	NA	NA	NA
WP_010931412.1|3343635_3345195_+	chaperone SurA	NA	NA	NA	NA	NA
WP_010931413.1|3345219_3346017_+	16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA	NA	NA	NA	NA	NA
WP_010931414.1|3346048_3347194_-	glycerate kinase	NA	W6LM47	Streptococcus_phage	42.2	1.7e-41
WP_003814419.1|3347298_3348741_+	pyruvate kinase	NA	NA	NA	NA	NA
WP_010929184.1|3348743_3349973_-	spore maturation protein	NA	NA	NA	NA	NA
WP_005012808.1|3352110_3353061_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 27
NZ_CP010843	Bordetella pertussis strain H542 chromosome, complete genome	4103349	3362353	3395036	4103349	terminase,tail,tRNA,transposase	uncultured_Caudovirales_phage(21.05%)	41	NA	NA
WP_003814636.1|3362353_3364084_-|tRNA	proline--tRNA ligase	tRNA	A0A2K9L3R9	Tupanvirus	29.4	4.6e-11
WP_003814635.1|3364149_3364722_+	RNA pyrophosphohydrolase	NA	NA	NA	NA	NA
WP_010931420.1|3364702_3365389_+	response regulator	NA	NA	NA	NA	NA
WP_010931421.1|3365744_3366416_+	SOS response-associated peptidase	NA	Q5QF62	Pseudomonas_virus	39.9	4.7e-36
WP_010931422.1|3366744_3366966_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010926433.1|3366965_3367247_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931423.1|3367243_3367759_-	DUF2514 family protein	NA	NA	NA	NA	NA
WP_010931424.1|3367758_3368310_-	lysozyme	NA	NA	NA	NA	NA
WP_010931425.1|3368288_3368531_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931426.1|3368535_3369348_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010926428.1|3369347_3369611_-	hypothetical protein	NA	NA	NA	NA	NA
WP_124740660.1|3369651_3369849_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931428.1|3369829_3370246_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931429.1|3370250_3374207_-	DUF1983 domain-containing protein	NA	A0A0B5A1N2	Achromobacter_phage	40.8	3.9e-215
WP_010931430.1|3374199_3374589_-	C40 family peptidase	NA	A0A0G3EYJ9	Achromobacter_phage	50.0	3.0e-35
WP_010931431.1|3374585_3375119_-	DUF1833 family protein	NA	A5A3Q9	Burkholderia_phage	46.9	1.1e-40
WP_010931432.1|3375186_3375546_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931433.1|3375555_3378168_-|tail	phage tail tape measure protein	tail	A0A2H4J107	uncultured_Caudovirales_phage	38.6	4.9e-105
WP_010931434.1|3378193_3378484_-	DUF1799 domain-containing protein	NA	A0A2H4JBP7	uncultured_Caudovirales_phage	45.2	3.7e-14
WP_003813412.1|3378501_3378831_-|tail	phage tail assembly chaperone	tail	A0A2H4J121	uncultured_Caudovirales_phage	44.0	2.9e-15
WP_010931435.1|3378840_3379359_-|tail	phage tail protein	tail	A0A1S5R1H0	Pseudomonas_phage	38.3	5.4e-24
WP_010931436.1|3379613_3380114_-	HNH endonuclease	NA	A0A1I9SEX5	Klebsiella_phage	45.1	4.4e-31
WP_010931437.1|3380121_3380544_-	DUF4128 domain-containing protein	NA	NA	NA	NA	NA
WP_010931438.1|3380540_3380939_-	hypothetical protein	NA	I6PCW1	Cronobacter_phage	38.0	4.2e-16
WP_010931439.1|3380935_3381331_-	hypothetical protein	NA	A0A2D2W284	Stenotrophomonas_phage	35.0	7.8e-07
WP_010931440.1|3381330_3381531_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247789.1|3381532_3382015_-	hypothetical protein	NA	A0A2H4JE38	uncultured_Caudovirales_phage	37.1	1.8e-13
WP_010931442.1|3382077_3382329_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012808.1|3383003_3383954_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931443.1|3384382_3384985_-	hypothetical protein	NA	R9TF81	Synechococcus_phage	43.6	7.9e-27
WP_010931444.1|3385107_3385350_-	hypothetical protein	NA	A0A0H5AUE5	Pseudomonas_phage	53.2	5.6e-16
WP_010931445.1|3385355_3386411_-	hypothetical protein	NA	A0A0H5BBX3	Pseudomonas_phage	50.6	2.6e-97
WP_010931446.1|3386439_3387858_-	DUF4055 domain-containing protein	NA	R9TF43	Synechococcus_phage	42.1	2.2e-99
WP_010931447.1|3387860_3389138_-|terminase	terminase large subunit	terminase	A0A1B1P9C9	Acinetobacter_phage	64.7	2.4e-150
WP_019247942.1|3389124_3389610_-|transposase	transposase	transposase	C7U0W1	Enterobacteria_phage	61.5	7.3e-39
WP_005012067.1|3390249_3391200_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_161633094.1|3391456_3392146_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023853179.1|3392138_3392390_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010931451.1|3392944_3393556_+	S24 family peptidase	NA	NA	NA	NA	NA
WP_019247378.1|3393627_3393834_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|3394085_3395036_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 28
NZ_CP010843	Bordetella pertussis strain H542 chromosome, complete genome	4103349	3406255	3452574	4103349	transposase,tRNA,protease	Bacillus_phage(40.0%)	44	NA	NA
WP_010930800.1|3406255_3407206_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931467.1|3407282_3409103_+	DNA helicase RecQ	NA	L7RCS0	Acanthamoeba_polyphaga_moumouvirus	35.3	3.1e-74
WP_010931466.1|3409107_3410181_-	Holliday junction branch migration DNA helicase RuvB	NA	A0A127AWE7	Bacillus_phage	25.7	2.3e-08
WP_003814230.1|3410303_3411272_+	threo-3-hydroxy-L-aspartate ammonia-lyase	NA	NA	NA	NA	NA
WP_010927008.1|3411345_3412257_+	complex I NDUFA9 subunit family protein	NA	NA	NA	NA	NA
WP_003814226.1|3412275_3412848_-	Holliday junction branch migration protein RuvA	NA	NA	NA	NA	NA
WP_010931465.1|3412928_3413477_-	crossover junction endodeoxyribonuclease RuvC	NA	NA	NA	NA	NA
WP_010931464.1|3413476_3415066_-	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase	NA	Q58MG4	Prochlorococcus_phage	47.2	8.7e-65
WP_003814221.1|3415135_3415375_-	DNA-binding protein	NA	NA	NA	NA	NA
WP_023995141.1|3415415_3416441_-|tRNA	tRNA dihydrouridine synthase DusB	tRNA	NA	NA	NA	NA
WP_003814217.1|3416506_3417688_-	UbiH/UbiF/VisC/COQ6 family ubiquinone biosynthesis hydroxylase	NA	NA	NA	NA	NA
WP_010931463.1|3417784_3418237_+	membrane protein	NA	NA	NA	NA	NA
WP_010931462.1|3418246_3419587_-	aminopeptidase P N-terminal domain-containing protein	NA	NA	NA	NA	NA
WP_010931461.1|3419903_3420941_+	sodium:calcium antiporter	NA	NA	NA	NA	NA
WP_003814209.1|3421322_3421682_+	hypothetical protein	NA	NA	NA	NA	NA
WP_041166340.1|3421765_3422707_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_076879617.1|3422781_3423732_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814206.1|3424025_3425120_+	porin	NA	NA	NA	NA	NA
WP_003814205.1|3425201_3426083_+	cytochrome c oxidase assembly protein	NA	NA	NA	NA	NA
WP_003814203.1|3426104_3426944_-	UTP--glucose-1-phosphate uridylyltransferase GalU	NA	A0A127AW70	Bacillus_phage	48.9	1.1e-66
WP_010931459.1|3427019_3428537_+|protease	M48 family metalloprotease	protease	NA	NA	NA	NA
WP_010931458.1|3428633_3429734_-	alpha/beta fold hydrolase	NA	NA	NA	NA	NA
WP_010931457.1|3429750_3430173_-	nuclear transport factor 2 family protein	NA	NA	NA	NA	NA
WP_003814195.1|3430195_3430408_-	zinc-finger domain-containing protein	NA	NA	NA	NA	NA
WP_010931456.1|3430454_3431375_-	branched-chain amino acid transaminase	NA	NA	NA	NA	NA
WP_010931455.1|3431557_3432307_+	AzlC family ABC transporter permease	NA	NA	NA	NA	NA
WP_003814188.1|3432309_3432639_+	AzlD domain-containing protein	NA	NA	NA	NA	NA
WP_010931454.1|3432845_3434279_+	DEAD/DEAH box helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	34.4	1.5e-52
WP_003814185.1|3434290_3434674_-	thioredoxin family protein	NA	NA	NA	NA	NA
WP_010931453.1|3434735_3435536_+	EI24 domain-containing protein	NA	NA	NA	NA	NA
WP_005015810.1|3435634_3436585_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931477.1|3436640_3437453_+	competence/damage-inducible protein A	NA	NA	NA	NA	NA
WP_003814178.1|3437611_3438460_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931478.1|3438660_3443055_+	dermonecrotic toxin	NA	NA	NA	NA	NA
WP_010931479.1|3443148_3444126_-	tripartite tricarboxylate transporter substrate binding protein BugD	NA	NA	NA	NA	NA
WP_003814172.1|3444512_3445091_+	TIGR01841 family phasin	NA	NA	NA	NA	NA
WP_010931480.1|3445238_3446288_-	quinone-dependent dihydroorotate dehydrogenase	NA	NA	NA	NA	NA
WP_003814165.1|3446328_3447063_-	arginyltransferase	NA	NA	NA	NA	NA
WP_010931481.1|3447857_3448439_-	NUDIX hydrolase	NA	NA	NA	NA	NA
WP_003814158.1|3448435_3449329_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003820995.1|3449462_3449864_+	DoxX family protein	NA	NA	NA	NA	NA
WP_010927005.1|3449881_3450484_-	DUF2946 family protein	NA	NA	NA	NA	NA
WP_003814152.1|3450541_3450925_-	membrane protein	NA	NA	NA	NA	NA
WP_005012067.1|3451623_3452574_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 29
NZ_CP010843	Bordetella pertussis strain H542 chromosome, complete genome	4103349	3597253	3652227	4103349	transposase	Lake_Baikal_phage(20.0%)	44	NA	NA
WP_005012067.1|3597253_3598204_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929827.1|3598320_3599388_+	linear amide C-N hydrolase	NA	NA	NA	NA	NA
WP_019247670.1|3599463_3602592_-	Rne/Rng family ribonuclease	NA	NA	NA	NA	NA
WP_023853155.1|3603099_3604065_+	RluA family pseudouridine synthase	NA	NA	NA	NA	NA
WP_010929830.1|3604067_3604739_+	HAD family hydrolase	NA	NA	NA	NA	NA
WP_010929831.1|3604895_3605855_+	protein-methionine-sulfoxide reductase catalytic subunit MsrP	NA	NA	NA	NA	NA
WP_003821340.1|3605862_3606525_+	protein-methionine-sulfoxide reductase heme-binding subunit MsrQ	NA	NA	NA	NA	NA
WP_005013747.1|3606521_3607472_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929806.1|3607593_3608847_+	CoA transferase	NA	NA	NA	NA	NA
WP_010929805.1|3608824_3609787_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929804.1|3609918_3610413_+	MaoC family dehydratase	NA	NA	NA	NA	NA
WP_010929803.1|3610412_3611645_+	CoA transferase	NA	NA	NA	NA	NA
WP_019247316.1|3612390_3612672_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929802.1|3612658_3613645_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929801.1|3613788_3614193_+	RidA family protein	NA	NA	NA	NA	NA
WP_010929800.1|3614334_3617721_+	molybdopterin-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010929799.1|3617751_3619215_+	short-chain fatty acid transporter	NA	NA	NA	NA	NA
WP_019248869.1|3619235_3620852_+	L-glutamate gamma-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
WP_010929797.1|3620937_3621597_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929796.1|3621626_3622067_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929795.1|3622577_3622781_+	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	58.2	5.8e-14
WP_010929794.1|3622956_3623862_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929577.1|3623960_3624911_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|3625009_3625960_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814674.1|3627741_3628935_-	acetyl-CoA C-acyltransferase	NA	NA	NA	NA	NA
WP_010929793.1|3629000_3630029_-	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_019247419.1|3630055_3631228_-	acyl-CoA dehydrogenase family protein	NA	NA	NA	NA	NA
WP_003814681.1|3631353_3632331_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814685.1|3632341_3633313_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929791.1|3633379_3634165_-	crotonase/enoyl-CoA hydratase family protein	NA	NA	NA	NA	NA
WP_003814691.1|3634157_3635390_-	CoA transferase	NA	NA	NA	NA	NA
WP_003814694.1|3635585_3636341_-	TerC family protein	NA	A0A0R6PEZ3	Moraxella_phage	40.8	2.9e-42
WP_010929789.1|3636451_3636970_+	MgtC/SapB family protein	NA	G3MA03	Bacillus_virus	38.9	2.1e-12
WP_010929788.1|3638758_3640159_+	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
WP_003820700.1|3640258_3640603_+	TIGR01244 family phosphatase	NA	NA	NA	NA	NA
WP_003814701.1|3640691_3641162_+	universal stress protein	NA	NA	NA	NA	NA
WP_019247421.1|3641572_3641971_+	GTP-binding protein	NA	E4ZFJ7	Streptococcus_phage	44.3	9.0e-19
WP_010929577.1|3642102_3643053_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814730.1|3645497_3646232_+	DNA polymerase III subunit epsilon	NA	A0A1X9SH08	Bradyrhizobium_phage	43.8	1.4e-41
WP_003814728.1|3646641_3646821_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003814726.1|3647011_3648325_+	short-chain fatty acid transporter	NA	NA	NA	NA	NA
WP_010929786.1|3648340_3649852_-	TAXI family TRAP transporter solute-binding subunit	NA	NA	NA	NA	NA
WP_010929785.1|3649848_3651054_-	sodium/glutamate symporter	NA	NA	NA	NA	NA
WP_022997984.1|3651249_3652227_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 30
NZ_CP010843	Bordetella pertussis strain H542 chromosome, complete genome	4103349	3742040	3796235	4103349	transposase,protease	Paramecium_bursaria_Chlorella_virus(14.29%)	53	NA	NA
WP_005013747.1|3742040_3742991_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814960.1|3743113_3743842_+	monofunctional biosynthetic peptidoglycan transglycosylase	NA	NA	NA	NA	NA
WP_010929739.1|3743938_3745117_+	LPS export ABC transporter permease LptG	NA	NA	NA	NA	NA
WP_010929738.1|3745113_3745947_+	symmetrical bis(5'-nucleosyl)-tetraphosphatase	NA	NA	NA	NA	NA
WP_010929737.1|3745983_3746724_-	1-acyl-sn-glycerol-3-phosphate acyltransferase	NA	NA	NA	NA	NA
WP_010929736.1|3746843_3748019_-	dihydroorotase	NA	NA	NA	NA	NA
WP_003820560.1|3748015_3748969_-	aspartate carbamoyltransferase catalytic subunit	NA	A7RB08	Paramecium_bursaria_Chlorella_virus	35.8	2.5e-30
WP_010929735.1|3748982_3749384_-	Holliday junction resolvase RuvX	NA	NA	NA	NA	NA
WP_010927118.1|3749376_3749982_-	YqgE/AlgH family protein	NA	NA	NA	NA	NA
WP_003814980.1|3750069_3750234_-	rubredoxin	NA	NA	NA	NA	NA
WP_010929734.1|3750350_3751199_+	hydroxymethylpyrimidine/phosphomethylpyrimidine kinase	NA	NA	NA	NA	NA
WP_003814984.1|3751195_3751849_+	thiamine phosphate synthase	NA	NA	NA	NA	NA
WP_010929733.1|3751865_3753149_+	glutamate-1-semialdehyde 2,1-aminomutase	NA	NA	NA	NA	NA
WP_010929732.1|3753388_3755014_+	DUF342 domain-containing protein	NA	NA	NA	NA	NA
WP_003814990.1|3755107_3755509_-	RidA family protein	NA	NA	NA	NA	NA
WP_003814993.1|3755533_3755968_-	acyl-CoA thioesterase	NA	NA	NA	NA	NA
WP_003814996.1|3755969_3757619_-	AMP-binding protein	NA	A0A2H4PQU7	Staphylococcus_phage	31.2	2.6e-56
WP_010929731.1|3757659_3758829_-	acyl-CoA dehydrogenase family protein	NA	NA	NA	NA	NA
WP_010929730.1|3758831_3759695_-	enoyl-CoA hydratase family protein	NA	NA	NA	NA	NA
WP_010929729.1|3763058_3763763_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	32.2	1.1e-16
WP_003815010.1|3763756_3764551_-	ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	23.5	2.6e-09
WP_003815011.1|3764547_3765513_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003815013.1|3765516_3766437_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003815015.1|3766533_3767697_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929728.1|3767919_3768810_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003815019.1|3768813_3769317_+	MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929727.1|3769359_3770358_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930048.1|3770354_3771305_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_111735998.1|3771393_3771681_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|3771872_3772823_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_004566083.1|3772882_3773443_+	5'-3'-deoxyribonucleotidase	NA	A0A1E1EUN3	Acanthamoeba_castellanii_mimivirus	30.8	3.2e-14
WP_004566082.1|3774945_3775827_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929725.1|3775940_3777143_+	MFS transporter	NA	NA	NA	NA	NA
WP_003819105.1|3777271_3779131_-	dihydroxy-acid dehydratase	NA	NA	NA	NA	NA
WP_003819104.1|3779208_3780018_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010929724.1|3780088_3781090_+	2-isopropylmalate synthase	NA	NA	NA	NA	NA
WP_003807710.1|3781121_3781982_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010929723.1|3782181_3783186_+	alpha/beta hydrolase	NA	A0A2L2DMU8	Acanthamoeba_polyphaga_mimivirus	31.5	7.5e-30
WP_003819100.1|3783182_3784769_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003807706.1|3784777_3785704_+	glyoxylate/hydroxypyruvate reductase A	NA	NA	NA	NA	NA
WP_003807705.1|3785726_3786353_+	FMN-binding negative transcriptional regulator	NA	NA	NA	NA	NA
WP_005015810.1|3786451_3787402_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014906092.1|3787398_3788535_-	trypsin-like peptidase domain-containing protein	NA	W5SAB9	Pithovirus	31.2	1.2e-07
WP_010927226.1|3788588_3789365_+	Nif3-like dinuclear metal center hexameric protein	NA	NA	NA	NA	NA
WP_010929721.1|3789389_3789848_-	large conductance mechanosensitive channel protein MscL	NA	NA	NA	NA	NA
WP_003815815.1|3789987_3790629_+	ubiquinol-cytochrome c reductase iron-sulfur subunit	NA	NA	NA	NA	NA
WP_003815816.1|3790693_3792076_+	cytochrome bc complex cytochrome b subunit	NA	NA	NA	NA	NA
WP_019247426.1|3792095_3792950_+	cytochrome c1	NA	NA	NA	NA	NA
WP_003815819.1|3793108_3793720_+	glutathione S-transferase N-terminal domain-containing protein	NA	NA	NA	NA	NA
WP_003815821.1|3793729_3794179_+|protease	ClpXP protease specificity-enhancing factor	protease	NA	NA	NA	NA
WP_010929719.1|3794697_3794838_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929718.1|3794845_3795007_-	DUF4224 domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|3795284_3796235_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 31
NZ_CP010843	Bordetella pertussis strain H542 chromosome, complete genome	4103349	3806851	3867740	4103349	transposase,tRNA,protease	uncultured_Caudovirales_phage(33.33%)	51	NA	NA
WP_010929591.1|3806851_3807802_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929711.1|3808532_3809513_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929710.1|3809526_3810651_+	CoA transferase	NA	NA	NA	NA	NA
WP_003814321.1|3810658_3812413_-	gamma-glutamyltransferase	NA	NA	NA	NA	NA
WP_010929709.1|3812519_3813419_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814324.1|3813483_3814467_-	tripartite tricarboxylate transporter substrate binding protein BugE	NA	NA	NA	NA	NA
WP_010929708.1|3814602_3815583_+	AEC family transporter	NA	NA	NA	NA	NA
WP_010929707.1|3815599_3816991_-	class II fumarate hydratase	NA	NA	NA	NA	NA
WP_010929706.1|3817142_3817679_+|tRNA	bifunctional alanine racemase/tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE	tRNA	NA	NA	NA	NA
WP_019247543.1|3817609_3818995_+	N-acetylmuramoyl-L-alanine amidase	NA	A0A2H4JCM7	uncultured_Caudovirales_phage	30.3	4.5e-17
WP_003814332.1|3819137_3819776_-	VTT domain-containing protein	NA	NA	NA	NA	NA
WP_010929705.1|3819862_3821752_+	DNA mismatch repair endonuclease MutL	NA	A0A1B2LRQ5	Wolbachia_phage	32.8	3.3e-79
WP_003814337.1|3821748_3822690_+|tRNA	tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA	tRNA	NA	NA	NA	NA
WP_003814339.1|3822795_3823845_-	phosphoribosylformylglycinamidine cyclo-ligase	NA	Q58MH8	Prochlorococcus_phage	43.6	5.6e-68
WP_010929704.1|3824097_3824799_+	DnaA regulatory inactivator Hda	NA	NA	NA	NA	NA
WP_010929703.1|3824795_3825494_+	HAD-IB family hydrolase	NA	NA	NA	NA	NA
WP_010929702.1|3825494_3826850_+	polynucleotide adenylyltransferase PcnB	NA	A0A1B1IVF3	uncultured_Mediterranean_phage	36.8	3.4e-25
WP_010929701.1|3826846_3827338_+	2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase	NA	NA	NA	NA	NA
WP_003814351.1|3827356_3828313_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003814355.1|3829723_3831826_-	TRAP transporter large permease subunit	NA	NA	NA	NA	NA
WP_003814356.1|3831996_3833040_+	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003814358.1|3833083_3833827_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814363.1|3834848_3835259_-	carboxymuconolactone decarboxylase family protein	NA	NA	NA	NA	NA
WP_010929700.1|3836208_3837006_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930742.1|3837104_3838055_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010927663.1|3838051_3839002_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|3839088_3840039_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929681.1|3840153_3841155_-	HindIII family type II restriction endonuclease	NA	NA	NA	NA	NA
WP_010929682.1|3841245_3841812_-	preprotein translocase subunit SecD	NA	NA	NA	NA	NA
WP_010929683.1|3842130_3844044_+	phosphomethylpyrimidine synthase ThiC	NA	NA	NA	NA	NA
WP_010929684.1|3844085_3845516_-	aldehyde dehydrogenase family protein	NA	NA	NA	NA	NA
WP_019247308.1|3845628_3847041_-	FAD-binding oxidoreductase	NA	NA	NA	NA	NA
WP_003818947.1|3847057_3847753_-	FadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012808.1|3847971_3848922_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929687.1|3848946_3849846_-	virginiamycin B lyase	NA	NA	NA	NA	NA
WP_010929688.1|3850000_3850549_+	N-acetyltransferase	NA	A0A2H4J136	uncultured_Caudovirales_phage	41.7	1.2e-21
WP_010929689.1|3850587_3851307_-	7-cyano-7-deazaguanine synthase QueC	NA	A0A0A0RPC6	Escherichia_phage	43.9	8.0e-50
WP_010929690.1|3851378_3854321_+	phosphoenolpyruvate carboxylase	NA	NA	NA	NA	NA
WP_033455792.1|3854914_3857710_+|protease	serine protease autotransporter SphB1	protease	NA	NA	NA	NA
WP_010929692.1|3858167_3859100_+	3-hydroxyacyl-CoA dehydrogenase family protein	NA	NA	NA	NA	NA
WP_010929693.1|3859211_3860561_+	short-chain fatty acid transporter	NA	NA	NA	NA	NA
WP_010929694.1|3860592_3861318_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010929695.1|3861368_3862220_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929696.1|3862349_3863036_+	3-oxoacid CoA-transferase subunit A	NA	NA	NA	NA	NA
WP_003819086.1|3863035_3863680_+	CoA transferase subunit B	NA	NA	NA	NA	NA
WP_003807674.1|3863736_3864012_+	muconolactone Delta-isomerase	NA	NA	NA	NA	NA
WP_003807672.1|3864037_3864334_+	YciI family protein	NA	NA	NA	NA	NA
WP_010929697.1|3864379_3865159_+	3-oxoadipate enol-lactonase	NA	NA	NA	NA	NA
WP_023853200.1|3865164_3866205_+	cyclase family protein	NA	NA	NA	NA	NA
WP_010929699.1|3866309_3866633_-	phosphate starvation-inducible protein	NA	NA	NA	NA	NA
WP_010931070.1|3866789_3867740_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 32
NZ_CP010843	Bordetella pertussis strain H542 chromosome, complete genome	4103349	4025520	4078952	4103349	transposase	Planktothrix_phage(40.0%)	45	NA	NA
WP_010931661.1|4025520_4026471_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931662.1|4026640_4027867_+	bifunctional glutamate N-acetyltransferase/amino-acid acetyltransferase ArgJ	NA	NA	NA	NA	NA
WP_010931663.1|4028066_4028933_+	ATP-binding protein	NA	NA	NA	NA	NA
WP_003815027.1|4028925_4029888_+	Nudix family hydrolase	NA	A0A221LFJ1	Barns_Ness_breadcrumb_sponge_sobemo-like_virus	53.4	1.9e-06
WP_010927663.1|4029988_4030939_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|4031037_4031988_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929577.1|4032086_4033037_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994937.1|4033033_4034527_-	efflux transporter outer membrane subunit	NA	NA	NA	NA	NA
WP_003815032.1|4034523_4037631_-	multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_010931665.1|4037627_4040696_-	MdtB/MuxB family multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_010931666.1|4040692_4041943_-	MdtA/MuxA family multidrug efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
WP_003815038.1|4042123_4042885_-	cell division protein ZapD	NA	NA	NA	NA	NA
WP_019247320.1|4042917_4043568_-	dephospho-CoA kinase	NA	NA	NA	NA	NA
WP_003820519.1|4043570_4044410_-	prepilin peptidase	NA	NA	NA	NA	NA
WP_003815047.1|4044650_4045394_+	copper resistance protein NlpE N-terminal domain-containing protein	NA	NA	NA	NA	NA
WP_003815049.1|4045476_4045824_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003815051.1|4045921_4046764_-	pantoate--beta-alanine ligase	NA	NA	NA	NA	NA
WP_003815053.1|4046808_4047696_-	segregation/condensation protein A	NA	NA	NA	NA	NA
WP_003815055.1|4047722_4047911_-	DUF3460 family protein	NA	NA	NA	NA	NA
WP_010931669.1|4048008_4049466_+	DHA2 family efflux MFS transporter permease subunit	NA	NA	NA	NA	NA
WP_010931670.1|4049452_4050979_+	glycerol kinase GlpK	NA	NA	NA	NA	NA
WP_003815061.1|4050997_4051465_-	CopD family protein	NA	NA	NA	NA	NA
WP_010931671.1|4051464_4052487_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_169507388.1|4052607_4053327_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	39.9	4.7e-34
WP_003815066.1|4053402_4054503_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003815068.1|4054504_4055695_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003815070.1|4055814_4056831_-	amino acid ABC transporter substrate-binding protein	NA	A0A1B1IT51	uncultured_Mediterranean_phage	42.1	1.0e-71
WP_003815073.1|4057149_4057821_+	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	38.2	9.5e-29
WP_010927126.1|4057817_4058726_+	FtsX-like permease family protein	NA	NA	NA	NA	NA
WP_010931672.1|4058937_4059585_+	chemoreceptor glutamine deamidase CheD	NA	NA	NA	NA	NA
WP_010931673.1|4063436_4064513_+	A/G-specific adenine glycosylase	NA	NA	NA	NA	NA
WP_003815084.1|4064523_4065333_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003815086.1|4065422_4066196_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_010930363.1|4066378_4067329_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_077274100.1|4067217_4068240_+	CoA transferase	NA	NA	NA	NA	NA
WP_010931674.1|4068229_4069384_+	CoA transferase	NA	NA	NA	NA	NA
WP_010931675.1|4069423_4070836_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_019247370.1|4070960_4071827_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931677.1|4071828_4072653_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_023853488.1|4072649_4073411_+	nitroreductase	NA	M1I6Q5	Acanthocystis_turfacea_Chlorella_virus	31.0	2.0e-19
WP_003808010.1|4073491_4074178_-	TetR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931679.1|4074351_4075359_+	hydroxymethylglutaryl-CoA lyase	NA	NA	NA	NA	NA
WP_003819309.1|4075355_4076135_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010931680.1|4076192_4077455_+	CoA transferase	NA	NA	NA	NA	NA
WP_010929591.1|4078001_4078952_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
