The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP010842	Bordetella pertussis strain H489 chromosome, complete genome	4106364	0	64269	4106364	transposase,tRNA,protease	Natrialba_phage(11.11%)	52	NA	NA
WP_010929569.1|0_1920_+|tRNA	tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG	tRNA	NA	NA	NA	NA
WP_003806878.1|1916_2609_+	16S rRNA (guanine(527)-N(7))-methyltransferase RsmG	NA	NA	NA	NA	NA
WP_003806879.1|2605_3403_+	ParA family protein	NA	Q8JL10	Natrialba_phage	34.9	5.6e-20
WP_010929570.1|3409_4171_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_010929571.1|4214_5132_+	ParB/RepB/Spo0J family partition protein	NA	I3NLC2	Bifidobacterium_phage	38.1	1.9e-16
WP_019247667.1|5124_5910_+	asparaginase	NA	NA	NA	NA	NA
WP_019247666.1|5943_6126_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003806883.1|6721_7912_+	elongation factor Tu	NA	A0A1V0SLW6	Klosneuvirus	29.2	3.1e-14
WP_003806884.1|8150_8531_+	preprotein translocase subunit SecE	NA	NA	NA	NA	NA
WP_003806885.1|8540_9074_+	transcription termination/antitermination protein NusG	NA	G3MAW2	Bacillus_virus	30.5	1.4e-11
WP_010929572.1|9137_9569_+	50S ribosomal protein L11	NA	NA	NA	NA	NA
WP_003806887.1|9571_10270_+	50S ribosomal protein L1	NA	NA	NA	NA	NA
WP_003806888.1|10512_11037_+	50S ribosomal protein L10	NA	NA	NA	NA	NA
WP_003806889.1|11118_11502_+	50S ribosomal protein L7/L12	NA	NA	NA	NA	NA
WP_010929573.1|11661_15774_+	DNA-directed RNA polymerase subunit beta	NA	A0A0N9R0J7	Chrysochromulina_ericina_virus	28.8	2.4e-21
WP_003818292.1|15773_20018_+	DNA-directed RNA polymerase subunit beta'	NA	A0A2I7QNZ7	Vibrio_phage	24.7	3.5e-68
WP_010929574.1|20126_20531_-	TssQ family T6SS-associated lipoprotein	NA	NA	NA	NA	NA
WP_010929575.1|20771_21947_+	membrane protein	NA	NA	NA	NA	NA
WP_010929576.1|24352_25459_-	FecR domain-containing protein	NA	NA	NA	NA	NA
WP_003818297.1|26470_27286_+	response regulator transcription factor	NA	NA	NA	NA	NA
WP_010930363.1|27282_28233_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023995007.1|28314_28650_-	CoA transferase	NA	NA	NA	NA	NA
WP_010929578.1|28674_29109_-	OB-fold domain-containing protein	NA	NA	NA	NA	NA
WP_019247164.1|29141_30359_-	thiolase family protein	NA	NA	NA	NA	NA
WP_010929580.1|30364_30862_-	MaoC family dehydratase	NA	NA	NA	NA	NA
WP_019247165.1|31069_32005_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929582.1|32214_33006_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010929583.1|33048_34470_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_005012808.1|34625_35576_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814398.1|35572_36763_-	MFS transporter	NA	NA	NA	NA	NA
WP_010929585.1|37012_37924_+|tRNA	glycine--tRNA ligase subunit alpha	tRNA	NA	NA	NA	NA
WP_010929586.1|37925_40064_+|tRNA	glycine--tRNA ligase subunit beta	tRNA	NA	NA	NA	NA
WP_003814404.1|40060_40600_+	D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase	NA	NA	NA	NA	NA
WP_003814405.1|40603_41332_+	1-acyl-sn-glycerol-3-phosphate acyltransferase	NA	NA	NA	NA	NA
WP_010929587.1|41318_42212_+	M48 family metallopeptidase	NA	NA	NA	NA	NA
WP_019247766.1|42282_42678_+	lactoylglutathione lyase	NA	NA	NA	NA	NA
WP_003814412.1|42687_43218_+	peptide deformylase	NA	E3SLL2	Synechococcus_phage	35.4	3.7e-12
WP_010930742.1|43663_44614_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_062826594.1|44610_45561_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|45647_46598_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929681.1|46712_47714_-	HindIII family type II restriction endonuclease	NA	NA	NA	NA	NA
WP_010929682.1|47804_48371_-	preprotein translocase subunit SecD	NA	NA	NA	NA	NA
WP_010929683.1|48689_50603_+	phosphomethylpyrimidine synthase ThiC	NA	NA	NA	NA	NA
WP_010929684.1|50644_52075_-	aldehyde dehydrogenase family protein	NA	NA	NA	NA	NA
WP_019247308.1|52187_53600_-	FAD-binding oxidoreductase	NA	NA	NA	NA	NA
WP_003818947.1|53616_54312_-	FadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012808.1|54530_55481_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929687.1|55505_56405_-	virginiamycin B lyase	NA	NA	NA	NA	NA
WP_010929688.1|56559_57108_+	N-acetyltransferase	NA	A0A2H4J136	uncultured_Caudovirales_phage	41.7	1.2e-21
WP_010929689.1|57146_57866_-	7-cyano-7-deazaguanine synthase QueC	NA	A0A0A0RPC6	Escherichia_phage	43.9	8.0e-50
WP_010929690.1|57937_60880_+	phosphoenolpyruvate carboxylase	NA	NA	NA	NA	NA
WP_033446404.1|61473_64269_+|protease	serine protease autotransporter SphB1	protease	NA	NA	NA	NA
>prophage 2
NZ_CP010842	Bordetella pertussis strain H489 chromosome, complete genome	4106364	104682	172506	4106364	transposase,tRNA	Bacillus_phage(22.22%)	57	NA	NA
WP_010929591.1|104682_105633_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003815898.1|105839_106316_+	bacterioferritin	NA	NA	NA	NA	NA
WP_010929663.1|106397_107081_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003815895.1|107105_108713_-	peptide chain release factor 3	NA	A0A2K9L6L3	Tupanvirus	37.8	9.3e-14
WP_010929661.1|108761_109391_-	LysE family transporter	NA	NA	NA	NA	NA
WP_010929660.1|109424_110855_-	DEAD/DEAH box helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	29.8	5.8e-44
WP_003815889.1|111137_111767_+	LemA family protein	NA	NA	NA	NA	NA
WP_010929659.1|111744_112647_+	YgcG family protein	NA	NA	NA	NA	NA
WP_005015810.1|114090_115041_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929658.1|115599_117162_-	ubiquinone biosynthesis regulatory protein kinase UbiB	NA	A0A2N9QVT9	Dishui_lake_phycodnavirus	28.7	1.0e-33
WP_023853232.1|117158_117794_-	SCP2 sterol-binding domain-containing protein	NA	NA	NA	NA	NA
WP_010929656.1|118022_119045_-	Tim44 domain-containing protein	NA	NA	NA	NA	NA
WP_003815111.1|119210_119987_-	bifunctional demethylmenaquinone methyltransferase/2-methoxy-6-polyprenyl-1,4-benzoquinol methylase UbiE	NA	NA	NA	NA	NA
WP_003815113.1|120150_120849_+	phosphate regulon transcriptional regulator PhoB	NA	W8CYM9	Bacillus_phage	37.1	8.6e-33
WP_010929655.1|120860_122171_+	phosphate regulon sensor histidine kinase PhoR	NA	A0A1V0SGX0	Hokovirus	25.5	6.2e-16
WP_010929654.1|122226_122904_+	heavy metal response regulator transcription factor	NA	W8CYM9	Bacillus_phage	35.2	1.5e-29
WP_010929653.1|122900_124298_+	heavy metal sensor histidine kinase	NA	NA	NA	NA	NA
WP_010929652.1|124403_124865_+	DUF411 domain-containing protein	NA	NA	NA	NA	NA
WP_023853237.1|124969_126169_+	phosphoglycerate dehydrogenase	NA	A0A1V0SBV6	Catovirus	42.6	3.1e-91
WP_010929650.1|126220_127096_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003815126.1|127197_127629_+	VOC family protein	NA	NA	NA	NA	NA
WP_010929649.1|127653_128382_+	5-oxoprolinase subunit PxpB	NA	NA	NA	NA	NA
WP_010929648.1|128378_129359_+	biotin-dependent carboxyltransferase	NA	NA	NA	NA	NA
WP_003815135.1|130125_130908_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929647.1|131026_131998_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019247545.1|132069_132828_+	FAD-dependent monooxygenase	NA	NA	NA	NA	NA
WP_019247546.1|132846_133290_+	FAD-dependent monooxygenase	NA	NA	NA	NA	NA
WP_003817676.1|133310_134123_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_010929646.1|134128_135061_+	alpha/beta hydrolase fold domain-containing protein	NA	NA	NA	NA	NA
WP_010929645.1|135044_136268_+	CoA transferase	NA	NA	NA	NA	NA
WP_010929644.1|136355_137138_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247146.1|137190_141153_-	FAD/FMN-binding oxidoreductase	NA	NA	NA	NA	NA
WP_003815155.1|141899_143408_+	threonine ammonia-lyase, biosynthetic	NA	NA	NA	NA	NA
WP_005012067.1|143826_144777_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929512.1|146043_146922_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003815905.1|146949_147252_-	bacterioferritin-associated ferredoxin	NA	NA	NA	NA	NA
WP_023853393.1|147344_148784_-	RNA polymerase factor sigma-54	NA	NA	NA	NA	NA
WP_010929640.1|148782_149430_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929639.1|149856_151557_+	2-isopropylmalate synthase	NA	NA	NA	NA	NA
WP_010929638.1|151647_152901_-	amidase	NA	NA	NA	NA	NA
WP_019247800.1|153794_154184_+	substrate-binding domain-containing protein	NA	NA	NA	NA	NA
WP_010929637.1|154180_155191_+	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_003815918.1|156027_156861_+	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_014905488.1|156857_157763_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	31.7	9.8e-21
WP_005012067.1|157861_158812_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929635.1|158912_159734_+	phosphodiesterase	NA	NA	NA	NA	NA
WP_010929634.1|159839_160880_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.7	6.0e-22
WP_010929633.1|160922_162215_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003815927.1|162225_163101_+	sugar ABC transporter permease	NA	NA	NA	NA	NA
WP_003815929.1|163097_163898_+	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
WP_010931363.1|163973_164990_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003815930.1|165272_165590_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003815933.1|165680_166028_-	DUF1840 domain-containing protein	NA	NA	NA	NA	NA
WP_023853376.1|166315_167998_+|tRNA	arginine--tRNA ligase	tRNA	NA	NA	NA	NA
WP_010929628.1|168751_169381_+	thiol:disulfide interchange protein DsbA/DsbL	NA	NA	NA	NA	NA
WP_010929627.1|169462_170656_-	cystathionine beta-lyase	NA	NA	NA	NA	NA
WP_010929626.1|171555_172506_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 3
NZ_CP010842	Bordetella pertussis strain H489 chromosome, complete genome	4106364	200329	236269	4106364	transposase	Sphingobium_phage(33.33%)	33	NA	NA
WP_041166334.1|200329_201274_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|201348_202299_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929607.1|202295_203705_-	signal recognition particle protein	NA	NA	NA	NA	NA
WP_010929606.1|203810_204653_+	cytochrome c biogenesis protein CcsA	NA	NA	NA	NA	NA
WP_003807805.1|204654_204906_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003807804.1|204994_205576_+	1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD	NA	A0A1W6DX33	Sphingobium_phage	54.3	1.7e-05
WP_010929605.1|205607_206228_+	glutathione S-transferase	NA	NA	NA	NA	NA
WP_010929604.1|206389_208297_-	molecular chaperone HtpG	NA	A0A1B1ISV4	uncultured_Mediterranean_phage	37.2	1.1e-117
WP_003816713.1|209489_209804_-	DUF1153 domain-containing protein	NA	NA	NA	NA	NA
WP_010929584.1|209897_210848_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929603.1|211269_212451_+	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019247832.1|213080_214352_+	TRAP transporter large permease	NA	NA	NA	NA	NA
WP_029443770.1|214386_215445_+	2Fe-2S iron-sulfur cluster binding domain-containing protein	NA	NA	NA	NA	NA
WP_010929600.1|215563_215866_+	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA	NA
WP_010929599.1|215878_216460_+	DJ-1/PfpI family protein	NA	NA	NA	NA	NA
WP_019248755.1|216516_217491_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929597.1|217914_218856_+	hypothetical protein	NA	NA	NA	NA	NA
WP_047122776.1|219045_219459_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010929595.1|219458_220685_+	type II toxin-antitoxin system HipA family toxin	NA	NA	NA	NA	NA
WP_005012808.1|221485_222436_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929594.1|222529_223429_+	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_023852650.1|223508_224270_+	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003817737.1|224266_224956_+	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_019247224.1|224980_225571_+	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.6	3.2e-20
WP_010929592.1|225576_226311_+	aspartate/glutamate racemase family protein	NA	NA	NA	NA	NA
WP_029443813.1|227542_228799_-	muropeptide transporter	NA	NA	NA	NA	NA
WP_010929591.1|228841_229792_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003817748.1|229927_230542_-	methionine biosynthesis protein MetW	NA	NA	NA	NA	NA
WP_010929590.1|230538_231786_-	homoserine O-acetyltransferase	NA	NA	NA	NA	NA
WP_003815255.1|232955_233849_-	AEC family transporter	NA	NA	NA	NA	NA
WP_003815265.1|233976_234213_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010929589.1|234184_234733_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929588.1|235318_236269_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 4
NZ_CP010842	Bordetella pertussis strain H489 chromosome, complete genome	4106364	250683	303019	4106364	transposase,tRNA,protease	Bacillus_phage(25.0%)	48	NA	NA
WP_003814337.1|250683_251625_-|tRNA	tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA	tRNA	NA	NA	NA	NA
WP_010929705.1|251621_253511_-	DNA mismatch repair endonuclease MutL	NA	A0A1B2LRQ5	Wolbachia_phage	32.8	3.3e-79
WP_003814332.1|253597_254236_+	VTT domain-containing protein	NA	NA	NA	NA	NA
WP_019247543.1|254378_255764_-	N-acetylmuramoyl-L-alanine amidase	NA	A0A2H4JCM7	uncultured_Caudovirales_phage	30.3	4.5e-17
WP_010929706.1|255694_256231_-|tRNA	bifunctional alanine racemase/tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE	tRNA	NA	NA	NA	NA
WP_010929707.1|256382_257774_+	class II fumarate hydratase	NA	NA	NA	NA	NA
WP_010929708.1|257790_258771_-	AEC family transporter	NA	NA	NA	NA	NA
WP_003814324.1|258906_259890_+	tripartite tricarboxylate transporter substrate binding protein BugE	NA	NA	NA	NA	NA
WP_010929709.1|259954_260854_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814321.1|260960_262715_+	gamma-glutamyltransferase	NA	NA	NA	NA	NA
WP_010929710.1|262722_263847_-	CoA transferase	NA	NA	NA	NA	NA
WP_010929711.1|263860_264841_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_005012067.1|265571_266522_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929712.1|267081_267627_+	GbsR/MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929713.1|267710_269330_+	cytochrome d ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
WP_004567834.1|269345_270500_+	cytochrome d ubiquinol oxidase subunit II	NA	NA	NA	NA	NA
WP_003817696.1|270513_270639_+	cytochrome bd-I oxidase subunit CydX	NA	NA	NA	NA	NA
WP_010929714.1|270635_272387_+	thiol reductant ABC exporter subunit CydD	NA	W8CYL7	Bacillus_phage	23.8	3.4e-09
WP_010929715.1|272383_274063_+	thiol reductant ABC exporter subunit CydC	NA	W8CYL7	Bacillus_phage	27.6	3.6e-16
WP_010929716.1|274125_274674_+	adenine phosphoribosyltransferase	NA	A0A1V0SKE5	Klosneuvirus	43.1	1.3e-28
WP_010929717.1|275816_276095_+	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|277138_278089_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_173651708.1|278106_278253_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929718.1|278366_278528_+	DUF4224 domain-containing protein	NA	NA	NA	NA	NA
WP_010929719.1|278535_278676_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815821.1|279194_279644_-|protease	ClpXP protease specificity-enhancing factor	protease	NA	NA	NA	NA
WP_003815819.1|279653_280265_-	glutathione S-transferase N-terminal domain-containing protein	NA	NA	NA	NA	NA
WP_019247426.1|280423_281278_-	cytochrome c1	NA	NA	NA	NA	NA
WP_003815816.1|281297_282680_-	cytochrome bc complex cytochrome b subunit	NA	NA	NA	NA	NA
WP_003815815.1|282744_283386_-	ubiquinol-cytochrome c reductase iron-sulfur subunit	NA	NA	NA	NA	NA
WP_010929721.1|283525_283984_+	large conductance mechanosensitive channel protein MscL	NA	NA	NA	NA	NA
WP_010927226.1|284008_284785_-	Nif3-like dinuclear metal center hexameric protein	NA	NA	NA	NA	NA
WP_014906092.1|284838_285975_+	trypsin-like peptidase domain-containing protein	NA	W5SAB9	Pithovirus	31.2	1.2e-07
WP_005015810.1|285971_286922_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003807705.1|287020_287647_-	FMN-binding negative transcriptional regulator	NA	NA	NA	NA	NA
WP_003807706.1|287669_288596_-	glyoxylate/hydroxypyruvate reductase A	NA	NA	NA	NA	NA
WP_003819100.1|288604_290191_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929723.1|290187_291192_-	alpha/beta hydrolase	NA	A0A2L2DMU8	Acanthamoeba_polyphaga_mimivirus	31.5	7.5e-30
WP_003807710.1|291391_292252_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010929724.1|292283_293285_-	2-isopropylmalate synthase	NA	NA	NA	NA	NA
WP_003819104.1|293355_294165_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003819105.1|294242_296102_+	dihydroxy-acid dehydratase	NA	NA	NA	NA	NA
WP_010929725.1|296230_297433_-	MFS transporter	NA	NA	NA	NA	NA
WP_004566082.1|297546_298428_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_004566083.1|299930_300491_-	5'-3'-deoxyribonucleotidase	NA	A0A1E1EUN3	Acanthamoeba_castellanii_mimivirus	30.8	3.2e-14
WP_005013747.1|300550_301501_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_111735998.1|301692_301980_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930048.1|302068_303019_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 6
NZ_CP010842	Bordetella pertussis strain H489 chromosome, complete genome	4106364	555307	614607	4106364	transposase,tRNA	Acinetobacter_phage(27.27%)	48	NA	NA
WP_023852617.1|555307_556258_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003815367.1|557581_558358_-	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_010931383.1|558392_560165_+	M61 family metallopeptidase	NA	NA	NA	NA	NA
WP_010931382.1|560166_561069_-	NAD(P)/FAD-dependent oxidoreductase	NA	G3MA85	Bacillus_virus	24.0	1.9e-08
WP_003817821.1|561193_561553_+	dihydroneopterin aldolase	NA	NA	NA	NA	NA
WP_010931381.1|561584_562547_+|tRNA	tRNA 2-thiocytidine(32) synthetase TtcA	tRNA	A0A0U2S5Z2	Escherichia_phage	64.5	4.6e-93
WP_005012067.1|562645_563596_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931380.1|563608_564544_-	D-2-hydroxyacid dehydrogenase family protein	NA	A0A1J0F959	Only_Syngen_Nebraska_virus	27.7	6.4e-15
WP_010931379.1|564603_565443_-	thiol:disulfide interchange protein DsbC	NA	NA	NA	NA	NA
WP_010931378.1|565439_566609_-	UbiH/UbiF family hydroxylase	NA	NA	NA	NA	NA
WP_003815379.1|566605_567895_-	murein transglycosylase A	NA	NA	NA	NA	NA
WP_003815381.1|567937_568312_-	Co2+/Mg2+ efflux protein ApaG	NA	NA	NA	NA	NA
WP_003815384.1|568417_569155_+	ribulose-phosphate 3-epimerase	NA	NA	NA	NA	NA
WP_010931377.1|569162_569867_+	phosphoglycolate phosphatase	NA	NA	NA	NA	NA
WP_010931376.1|570130_571651_+	anthranilate synthase component I	NA	S4VT78	Pandoravirus	32.1	9.0e-43
WP_003815390.1|571706_572270_+	aminodeoxychorismate/anthranilate synthase component II	NA	A0A0P0IKJ1	Acinetobacter_phage	62.1	1.1e-65
WP_003817833.1|572288_573320_+	anthranilate phosphoribosyltransferase	NA	A0A0N7IRD9	Acinetobacter_phage	42.7	7.4e-73
WP_010931375.1|573316_574105_+	indole-3-glycerol phosphate synthase TrpC	NA	A0A0P0IR83	Acinetobacter_phage	53.0	5.1e-66
WP_019247413.1|574125_574284_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023997720.1|574280_575270_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|577026_577977_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931374.1|579199_580102_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814312.1|580103_580958_-	formyltetrahydrofolate deformylase	NA	NA	NA	NA	NA
WP_010931373.1|581004_582114_-	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010931372.1|582124_582643_-	flavin reductase family protein	NA	NA	NA	NA	NA
WP_003814302.1|582672_583305_-	pyridoxamine 5'-phosphate oxidase	NA	NA	NA	NA	NA
WP_003814300.1|583376_584036_-	gamma-glutamylcyclotransferase	NA	NA	NA	NA	NA
WP_003814298.1|584032_585253_-	MFS transporter	NA	NA	NA	NA	NA
WP_019247745.1|585521_586394_+|tRNA	tRNA threonylcarbamoyladenosine dehydratase	tRNA	NA	NA	NA	NA
WP_010931370.1|586549_587287_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931369.1|587289_588921_-	AMP-binding protein	NA	NA	NA	NA	NA
WP_010931368.1|589016_590006_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010927020.1|590002_590713_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010931363.1|590808_591825_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003814287.1|592096_592723_-	aminotransferase class IV	NA	NA	NA	NA	NA
WP_010931367.1|592778_593906_-	aminodeoxychorismate synthase component I	NA	S4VT78	Pandoravirus	37.8	3.8e-38
WP_003814283.1|593911_599629_-	excinuclease ABC subunit UvrA	NA	A0A1B1IVR3	uncultured_Mediterranean_phage	39.5	1.0e-195
WP_003814277.1|600196_601141_-	LysR family transcriptional regulator	NA	A0A2P0ZL89	Lactobacillus_phage	23.2	8.4e-07
WP_003814275.1|601329_602265_+	glycosyltransferase family 2 protein	NA	NA	NA	NA	NA
WP_010931365.1|602382_603954_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019247692.1|604033_605242_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_019247693.1|605739_606657_+	DMT family transporter	NA	NA	NA	NA	NA
WP_003814254.1|609017_609239_+	glycine zipper 2TM domain-containing protein	NA	NA	NA	NA	NA
WP_010929632.1|609569_610586_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003814252.1|610670_610922_-	cell division topological specificity factor MinE	NA	NA	NA	NA	NA
WP_003814250.1|610925_611741_-	septum site-determining protein MinD	NA	NA	NA	NA	NA
WP_010931362.1|611853_612732_-	septum site-determining protein MinC	NA	NA	NA	NA	NA
WP_003820957.1|612843_614607_-|tRNA	glutamine--tRNA ligase/YqeY domain fusion protein	tRNA	A0A222YZ70	Escherichia_phage	50.0	5.0e-162
>prophage 7
NZ_CP010842	Bordetella pertussis strain H489 chromosome, complete genome	4106364	620762	675552	4106364	transposase	Salmonella_phage(33.33%)	49	NA	NA
WP_010930179.1|620762_621713_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994844.1|621808_622780_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931357.1|622784_623465_-	tellurite resistance TerB family protein	NA	NA	NA	NA	NA
WP_003814742.1|623602_623995_+	OsmC family protein	NA	NA	NA	NA	NA
WP_010931561.1|624102_625119_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003814739.1|625358_626144_-	enoyl-ACP reductase FabI	NA	NA	NA	NA	NA
WP_010931356.1|626238_627648_-	transglycosylase SLT domain-containing protein	NA	NA	NA	NA	NA
WP_010927090.1|627658_628459_-	hydroxyacylglutathione hydrolase	NA	NA	NA	NA	NA
WP_010931355.1|628479_629250_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_010931354.1|629292_629760_+	ribonuclease HI	NA	J9Q745	Salmonella_phage	50.7	5.6e-36
WP_005013747.1|629756_630707_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003818344.1|632655_633534_-	fatty acid desaturase	NA	NA	NA	NA	NA
WP_019247959.1|634460_637439_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931070.1|637792_638743_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931353.1|638739_639828_-	NAD(P)H-binding protein	NA	NA	NA	NA	NA
WP_010931352.1|639863_640727_-	MaoC family dehydratase N-terminal domain-containing protein	NA	NA	NA	NA	NA
WP_010931351.1|641866_642256_-	OB-fold domain-containing protein	NA	NA	NA	NA	NA
WP_014486103.1|642259_643042_-	crotonase/enoyl-CoA hydratase family protein	NA	NA	NA	NA	NA
WP_047122778.1|643075_643861_-	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010931349.1|644136_645276_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931348.1|645272_646064_+	ATP-binding cassette domain-containing protein	NA	A0A1M7XV31	Cedratvirus	29.4	1.7e-08
WP_010931347.1|646060_646810_+	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	27.8	1.9e-09
WP_010931346.1|646806_647679_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_004566224.1|647678_648680_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003808195.1|648676_649840_+	acyl-CoA dehydrogenase family protein	NA	NA	NA	NA	NA
WP_003808193.1|649865_650549_+	TetR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247312.1|650502_651837_+	AMP-binding protein	NA	NA	NA	NA	NA
WP_010931344.1|651829_652924_+	CoA transferase	NA	NA	NA	NA	NA
WP_005012067.1|653690_654641_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931343.1|656581_657841_+	YeaH/YhbH family protein	NA	NA	NA	NA	NA
WP_003814858.1|657837_659376_+	SpoVR family protein	NA	NA	NA	NA	NA
WP_003814856.1|659372_660569_-	MFS transporter	NA	NA	NA	NA	NA
WP_010931342.1|660565_661942_-	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_003814852.1|661953_662970_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010927102.1|663038_664274_-	methylaspartate ammonia-lyase	NA	NA	NA	NA	NA
WP_010931341.1|664374_665169_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929282.1|665538_665946_+	GFA family protein	NA	NA	NA	NA	NA
WP_010929281.1|666363_666636_-	MerR family DNA-binding transcriptional regulator	NA	NA	NA	NA	NA
WP_124740609.1|666805_667030_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003814832.1|667217_668072_+	urease accessory protein UreD	NA	NA	NA	NA	NA
WP_010931340.1|668172_668475_+	urease subunit gamma	NA	NA	NA	NA	NA
WP_003814828.1|668519_669137_+	HupE/UreJ family protein	NA	NA	NA	NA	NA
WP_010931338.1|669153_669462_+	urease subunit beta	NA	NA	NA	NA	NA
WP_010931337.1|669458_671174_+	urease subunit alpha	NA	NA	NA	NA	NA
WP_014905506.1|671176_671794_+	urease accessory protein UreE	NA	NA	NA	NA	NA
WP_019247677.1|671894_672479_+	urease accessory protein UreF	NA	NA	NA	NA	NA
WP_010931336.1|672503_673148_+	urease accessory protein UreG	NA	NA	NA	NA	NA
WP_005013747.1|673552_674503_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023995489.1|674601_675552_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 8
NZ_CP010842	Bordetella pertussis strain H489 chromosome, complete genome	4106364	724490	764402	4106364	transposase,integrase,tRNA,protease	Pseudomonas_phage(33.33%)	30	721738:721756	741626:741644
721738:721756	attL	CTGCCTGGCGTGGCCGAGT	NA	NA	NA	NA
WP_010931308.1|724490_725087_+|tRNA	aminoacyl-tRNA hydrolase	tRNA	NA	NA	NA	NA
WP_010931307.1|725083_725866_+|protease	CPBP family intramembrane metalloprotease	protease	NA	NA	NA	NA
WP_010931306.1|725938_727030_+	redox-regulated ATPase YchF	NA	NA	NA	NA	NA
WP_010931305.1|727309_728437_+|integrase	site-specific integrase	integrase	A0A1B0VMI6	Pseudomonas_phage	33.6	1.4e-48
WP_010931304.1|728778_729825_+	Fic family protein	NA	NA	NA	NA	NA
WP_010931303.1|729972_733092_+	DEAD/DEAH box helicase family protein	NA	NA	NA	NA	NA
WP_010931302.1|733093_736045_+	restriction endonuclease subunit M	NA	G8I4P9	Mycobacterium_phage	25.1	2.9e-21
WP_010931301.1|736060_737272_+	AAA family ATPase	NA	NA	NA	NA	NA
WP_005013747.1|737455_738406_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_077274087.1|738422_738917_+	DUF4276 family protein	NA	NA	NA	NA	NA
WP_019247740.1|738920_739178_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019248455.1|739721_740633_+	UvrD-helicase domain-containing protein	NA	NA	NA	NA	NA
WP_029443992.1|740714_740999_+	ATP-dependent helicase	NA	A0A1V0SIN4	Klosneuvirus	34.1	6.8e-05
WP_005012067.1|741782_742733_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
741626:741644	attR	ACTCGGCCACGCCAGGCAG	NA	NA	NA	NA
WP_019247178.1|743151_745716_-	autotransporter domain-containing protein	NA	NA	NA	NA	NA
WP_019247179.1|745760_747614_-	autotransporter-associated beta strand repeat-containing protein	NA	NA	NA	NA	NA
WP_014905963.1|747946_749518_+	winged helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_162291319.1|750786_750942_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|750959_751910_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014905961.1|751995_752736_-	TetR family transcriptional regulator	NA	NA	NA	NA	NA
WP_029443749.1|752962_753910_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929591.1|755259_756210_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994811.1|756227_756440_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003814139.1|756403_757219_+	MerR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931299.1|757351_758791_+	FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_003814142.1|758804_759146_+	cupin domain-containing protein	NA	NA	NA	NA	NA
WP_010931298.1|759200_760856_+	gamma-glutamyltransferase family protein	NA	NA	NA	NA	NA
WP_003814146.1|761007_762018_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003814148.1|762150_762924_+	molybdate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_005012067.1|763451_764402_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 9
NZ_CP010842	Bordetella pertussis strain H489 chromosome, complete genome	4106364	774329	821947	4106364	transposase,tRNA,protease,holin	Bovine_alphaherpesvirus(10.0%)	47	NA	NA
WP_005012808.1|774329_775280_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003818450.1|775418_776171_+	uracil-DNA glycosylase	NA	A0A1Y0B680	Bovine_alphaherpesvirus	47.5	2.5e-46
WP_010931273.1|776409_778134_+	DEAD/DEAH box helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	32.9	9.5e-49
WP_004566001.1|778153_779413_+	SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_010931274.1|779427_780522_-|tRNA	CCA tRNA nucleotidyltransferase	tRNA	A0A0F6YPT7	Sinorhizobium_phage	50.5	2.4e-50
WP_023995440.1|780518_782645_-	lytic transglycosylase domain-containing protein	NA	A0A0S2SXL7	Bacillus_phage	36.6	5.5e-14
WP_010931276.1|782657_783338_+	5-formyltetrahydrofolate cyclo-ligase	NA	NA	NA	NA	NA
WP_003807204.1|783615_784989_+	MHS family MFS transporter	NA	NA	NA	NA	NA
WP_003818444.1|784990_786010_+	histone deacetylase family protein	NA	A0A2K9L473	Tupanvirus	31.7	3.4e-22
WP_003818443.1|786073_787045_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005013747.1|787109_788060_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003807199.1|788158_789001_-	methylenetetrahydrofolate reductase [NAD(P)H]	NA	NA	NA	NA	NA
WP_010931277.1|789000_789336_-|holin	phage holin family protein	holin	NA	NA	NA	NA
WP_010931278.1|789406_790825_-	adenosylhomocysteinase	NA	S4VPF6	Pandoravirus	29.4	8.7e-40
WP_003807194.1|791104_792145_-	glycosyltransferase family 1 protein	NA	NA	NA	NA	NA
WP_003818441.1|792224_792476_-	DUF1289 domain-containing protein	NA	NA	NA	NA	NA
WP_010925730.1|792586_793750_-	methionine adenosyltransferase	NA	A0A2H4PQS6	Staphylococcus_phage	60.8	5.0e-126
WP_010931279.1|794033_794888_+	lysophospholipid acyltransferase family protein	NA	NA	NA	NA	NA
WP_010931280.1|794884_795775_+	lysophospholipid acyltransferase family protein	NA	NA	NA	NA	NA
WP_003807183.1|795817_796729_+	diaminopimelate epimerase	NA	NA	NA	NA	NA
WP_010931281.1|796755_797448_+	DUF484 family protein	NA	NA	NA	NA	NA
WP_010931282.1|797462_798443_+	tyrosine recombinase XerC	NA	A0A166YH27	Gordonia_phage	30.5	3.3e-14
WP_010931283.1|798455_800597_-	TonB-dependent receptor	NA	NA	NA	NA	NA
WP_003818434.1|800645_801614_-	putative membrane protein	NA	NA	NA	NA	NA
WP_019247300.1|801604_802273_-	DUF1007 family protein	NA	NA	NA	NA	NA
WP_010931286.1|802233_803169_-	metal ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931287.1|803165_804062_-	metal ABC transporter permease	NA	NA	NA	NA	NA
WP_010931288.1|804058_804781_-	metal ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	30.0	1.1e-11
WP_019248127.1|804771_804936_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003807166.1|805109_805613_+	transcriptional repressor	NA	NA	NA	NA	NA
WP_010931290.1|805889_807005_+	GTP-binding protein	NA	NA	NA	NA	NA
WP_003807164.1|807147_807612_+	RNA polymerase-binding protein DksA	NA	NA	NA	NA	NA
WP_010931291.1|807759_808299_+|protease	ATP-dependent protease subunit HslV	protease	NA	NA	NA	NA
WP_003807162.1|808320_809655_+|protease	ATP-dependent protease ATPase subunit HslU	protease	A0A191ZC11	Erwinia_phage	29.6	3.5e-43
WP_003807161.1|809668_809974_-	copper-binding protein	NA	NA	NA	NA	NA
WP_023853416.1|810398_810980_+	cob(I)yrinic acid a,c-diamide adenosyltransferase	NA	NA	NA	NA	NA
WP_005013747.1|811061_812012_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|812110_813061_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814620.1|813501_814407_-	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_023853019.1|814462_816067_-	gamma-glutamyltransferase family protein	NA	NA	NA	NA	NA
WP_010931270.1|816323_817829_-	tripartite tricarboxylate transporter permease	NA	NA	NA	NA	NA
WP_003820744.1|817843_818308_-	tripartite tricarboxylate transporter TctB family protein	NA	NA	NA	NA	NA
WP_005012067.1|818597_819548_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_162268687.1|819565_819754_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003820745.1|819710_820241_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003814611.1|820240_820552_+	cell division protein ZapA	NA	NA	NA	NA	NA
WP_005012808.1|820996_821947_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 10
NZ_CP010842	Bordetella pertussis strain H489 chromosome, complete genome	4106364	1006163	1100200	4106364	transposase	Bacillus_virus(30.0%)	88	NA	NA
WP_005012067.1|1006163_1007114_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014486100.1|1007216_1007879_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019249309.1|1007973_1008144_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247599.1|1008496_1009498_+	amidase	NA	NA	NA	NA	NA
WP_003818702.1|1009500_1010697_+	CoA transferase	NA	NA	NA	NA	NA
WP_014486098.1|1010717_1011521_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_019247598.1|1011601_1011898_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247597.1|1011928_1012492_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_014486097.1|1012532_1013390_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_003818698.1|1013397_1014147_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	33.5	6.2e-29
WP_014486096.1|1014168_1015041_+	polysaccharide deacetylase family protein	NA	NA	NA	NA	NA
WP_014486095.1|1015069_1015849_+	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_014486094.1|1015882_1016680_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003808978.1|1019334_1019727_+	hypothetical protein	NA	NA	NA	NA	NA
WP_014486091.1|1019720_1020581_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003818691.1|1020584_1021547_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_014486089.1|1022323_1023013_+	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	28.8	4.8e-12
WP_010930208.1|1023873_1024824_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931181.1|1025173_1026043_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010926062.1|1026113_1026809_+	ankyrin repeat domain-containing protein	NA	NA	NA	NA	NA
WP_010931179.1|1026798_1027308_+	nucleoside deaminase	NA	NA	NA	NA	NA
WP_010931178.1|1027304_1028525_+	MFS transporter	NA	NA	NA	NA	NA
WP_010931177.1|1028472_1029375_-	transcriptional regulator GcvA	NA	NA	NA	NA	NA
WP_023997744.1|1030261_1031548_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931176.1|1031586_1032960_+	amidase	NA	NA	NA	NA	NA
WP_010931175.1|1032998_1033700_-	riboflavin synthase	NA	NA	NA	NA	NA
WP_010931174.1|1033998_1034988_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003809010.1|1035088_1035550_+	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931173.1|1035565_1036114_-	cysteine dioxygenase family protein	NA	NA	NA	NA	NA
WP_010931172.1|1036255_1037731_-	acyl--CoA ligase	NA	Q75ZG1	Hepacivirus	25.6	3.0e-35
WP_010931171.1|1037836_1038928_+	DUF2817 domain-containing protein	NA	NA	NA	NA	NA
WP_010931170.1|1038931_1039714_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931169.1|1039723_1040512_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	40.0	1.1e-33
WP_010931168.1|1041637_1042072_-	PaaI family thioesterase	NA	NA	NA	NA	NA
WP_010931167.1|1042068_1043079_-	zinc-binding dehydrogenase	NA	NA	NA	NA	NA
WP_003809025.1|1043122_1044049_-	VOC family protein	NA	NA	NA	NA	NA
WP_003809026.1|1044335_1044704_+	DUF861 domain-containing protein	NA	NA	NA	NA	NA
WP_154698394.1|1044756_1044903_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023853143.1|1044920_1045871_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931165.1|1045915_1048342_+	copper-translocating P-type ATPase	NA	A0A218MNH6	uncultured_virus	33.8	1.2e-86
WP_010931164.1|1048390_1049083_+	HD domain-containing protein	NA	A0A1D6Y7U0	Golden_Marseillevirus	29.9	4.7e-07
WP_010931163.1|1049155_1050355_+	aspartate/tyrosine/aromatic aminotransferase	NA	NA	NA	NA	NA
WP_003819549.1|1050372_1051278_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931162.1|1051393_1052323_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_010931161.1|1052348_1053695_+	MFS transporter	NA	NA	NA	NA	NA
WP_010931160.1|1053722_1054472_+	SDR family oxidoreductase	NA	A0A0M4JSW6	Mollivirus	26.4	1.2e-11
WP_010931159.1|1054485_1055268_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_005012067.1|1055460_1056411_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931158.1|1056472_1057582_-	porin	NA	NA	NA	NA	NA
WP_003815281.1|1058094_1058931_-	3-methyl-2-oxobutanoate hydroxymethyltransferase	NA	A0A0P0BXC9	Ostreococcus_lucimarinus_virus	33.3	1.6e-33
WP_023997028.1|1059000_1059966_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|1059962_1060913_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023998107.1|1060930_1061101_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247492.1|1061298_1061841_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|1062876_1063827_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247402.1|1064068_1064437_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019248356.1|1064482_1065607_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931156.1|1066741_1067494_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010931155.1|1067585_1068206_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_023852714.1|1068309_1069260_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931154.1|1069256_1071365_-	AsmA family protein	NA	NA	NA	NA	NA
WP_003820814.1|1071509_1072169_-	DNA-3-methyladenine glycosylase I	NA	NA	NA	NA	NA
WP_003820813.1|1072200_1072665_-	redox-sensitive transcriptional activator SoxR	NA	NA	NA	NA	NA
WP_019248355.1|1072940_1073126_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931153.1|1073177_1073930_-	DNA-binding protein	NA	NA	NA	NA	NA
WP_010931152.1|1073936_1075199_-	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_023852748.1|1075240_1076479_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003820806.1|1077556_1078684_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	32.3	1.2e-23
WP_003814524.1|1078694_1079522_-	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
WP_010931150.1|1079508_1080375_-	sugar ABC transporter permease	NA	NA	NA	NA	NA
WP_010931149.1|1081741_1082146_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012808.1|1082237_1083188_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_155120814.1|1083205_1083370_+	hypothetical protein	NA	NA	NA	NA	NA
WP_033446288.1|1083557_1084469_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003820799.1|1084483_1085194_+	FadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931147.1|1085190_1086435_+	DUF521 domain-containing protein	NA	NA	NA	NA	NA
WP_003820797.1|1086436_1086871_+	DUF126 domain-containing protein	NA	NA	NA	NA	NA
WP_003814535.1|1086899_1087205_+	antibiotic biosynthesis monooxygenase	NA	NA	NA	NA	NA
WP_005012067.1|1087303_1088254_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247277.1|1088310_1089465_-	iron-containing alcohol dehydrogenase	NA	NA	NA	NA	NA
WP_010930176.1|1089539_1090490_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931144.1|1091021_1091819_-	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019247918.1|1091866_1092520_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_003814544.1|1092476_1093565_-	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	36.4	8.7e-32
WP_003814547.1|1093729_1095955_-	glycoside hydrolase family 31 protein	NA	NA	NA	NA	NA
WP_023852715.1|1098232_1099129_+	inositol monophosphatase	NA	NA	NA	NA	NA
WP_162268686.1|1099082_1099232_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|1099249_1100200_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 11
NZ_CP010842	Bordetella pertussis strain H489 chromosome, complete genome	4106364	1130586	1201560	4106364	transposase,protease	uncultured_Mediterranean_phage(25.0%)	53	NA	NA
WP_005012808.1|1130586_1131537_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931130.1|1131593_1132706_+	Ldh family oxidoreductase	NA	NA	NA	NA	NA
WP_005012067.1|1135089_1136040_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931129.1|1136630_1137407_+	2-dehydro-3-deoxyglucarate aldolase	NA	NA	NA	NA	NA
WP_003812908.1|1137524_1137788_-	30S ribosomal protein S20	NA	NA	NA	NA	NA
WP_010931128.1|1137888_1138893_-	FecR domain-containing protein	NA	NA	NA	NA	NA
WP_010931127.1|1139093_1140695_-	murein biosynthesis integral membrane protein MurJ	NA	NA	NA	NA	NA
WP_010931126.1|1140720_1141479_-	3-hydroxyacyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_010931125.1|1141570_1142227_-	adenylate kinase	NA	NA	NA	NA	NA
WP_010931124.1|1142317_1143082_-	3-deoxy-manno-octulosonate cytidylyltransferase	NA	NA	NA	NA	NA
WP_003812895.1|1143091_1143280_-	Trm112 family protein	NA	NA	NA	NA	NA
WP_010931123.1|1143335_1144379_-	tetraacyldisaccharide 4'-kinase	NA	NA	NA	NA	NA
WP_010931122.1|1144375_1144789_-	biopolymer transporter ExbD	NA	NA	NA	NA	NA
WP_003812889.1|1144785_1145406_-	MotA/TolQ/ExbB proton channel family protein	NA	NA	NA	NA	NA
WP_005012067.1|1145686_1146637_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931120.1|1146804_1148196_+	exodeoxyribonuclease VII large subunit	NA	A0A1V0SD82	Indivirus	32.0	1.4e-29
WP_010931119.1|1148268_1148847_+	superoxide dismutase [Fe]	NA	NA	NA	NA	NA
WP_019247560.1|1148963_1150361_+	chloride channel protein	NA	NA	NA	NA	NA
WP_010931117.1|1150476_1151682_+	3-oxoadipyl-CoA thiolase	NA	NA	NA	NA	NA
WP_003820399.1|1151781_1152300_-	DUF192 domain-containing protein	NA	A0A1B1IUW8	uncultured_Mediterranean_phage	42.2	5.1e-14
WP_003812875.1|1152394_1152640_-	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	76.6	1.3e-20
WP_003820400.1|1152867_1153182_+|protease	ATP-dependent Clp protease adapter ClpS	protease	A0A1B1IT64	uncultured_Mediterranean_phage	43.8	1.2e-10
WP_010931116.1|1153271_1158461_+	alpha-2-macroglobulin family protein	NA	NA	NA	NA	NA
WP_010931115.1|1158457_1160626_+	penicillin-binding protein 1C	NA	NA	NA	NA	NA
WP_010931114.1|1160681_1162997_+|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	protease	A0A223W0B1	Agrobacterium_phage	41.9	4.1e-164
WP_003820402.1|1163001_1164321_+	PqiA/YebS family transporter subunit	NA	NA	NA	NA	NA
WP_014905522.1|1164339_1166013_+	MCE family protein	NA	NA	NA	NA	NA
WP_010931111.1|1166017_1166686_+	membrane integrity-associated transporter subunit PqiC	NA	NA	NA	NA	NA
WP_010931110.1|1166842_1170664_+	trifunctional transcriptional regulator/proline dehydrogenase/L-glutamate gamma-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
WP_154698391.1|1170818_1170977_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930800.1|1170994_1171945_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812857.1|1171966_1173112_+	branched-chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003820410.1|1173260_1174190_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003812851.1|1174186_1175275_+	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
WP_010931109.1|1175271_1176075_+	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	23.5	7.9e-14
WP_003812846.1|1176071_1176803_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	31.0	1.4e-12
WP_010931108.1|1176860_1178150_-	MFS transporter	NA	NA	NA	NA	NA
WP_010931107.1|1178246_1178849_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003812839.1|1183405_1183744_-	P-II family nitrogen regulator	NA	NA	NA	NA	NA
WP_010931105.1|1184451_1184718_+	accessory factor UbiK family protein	NA	NA	NA	NA	NA
WP_005012067.1|1186424_1187375_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931103.1|1187371_1188703_-	MFS transporter	NA	NA	NA	NA	NA
WP_010931102.1|1189963_1191964_+	cytochrome o ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
WP_003819722.1|1191956_1192598_+	cytochrome o ubiquinol oxidase subunit III	NA	NA	NA	NA	NA
WP_003809276.1|1192594_1193002_+	cytochrome o ubiquinol oxidase subunit IV	NA	NA	NA	NA	NA
WP_010931101.1|1192998_1193799_+	SURF1 family protein	NA	NA	NA	NA	NA
WP_010931100.1|1193873_1194578_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010931099.1|1194609_1195404_+	N-formylglutamate deformylase	NA	NA	NA	NA	NA
WP_005013747.1|1195400_1196351_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023995489.1|1196449_1197400_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812014.1|1197498_1197933_-	Cd(II)/Pb(II)-responsive transcriptional regulator	NA	NA	NA	NA	NA
WP_010931098.1|1198015_1200352_+	heavy metal translocating P-type ATPase	NA	E4ZFI9	Streptococcus_phage	42.8	3.2e-124
WP_010930525.1|1200543_1201560_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
>prophage 12
NZ_CP010842	Bordetella pertussis strain H489 chromosome, complete genome	4106364	1242631	1324766	4106364	transposase,tRNA	Bacillus_virus(25.0%)	60	NA	NA
WP_010929591.1|1242631_1243582_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931074.1|1243669_1245322_+	phenylacetic acid degradation protein PaaN	NA	NA	NA	NA	NA
WP_010931073.1|1245332_1246121_+	2-(1,2-epoxy-1,2-dihydrophenyl)acetyl-CoA isomerase	NA	NA	NA	NA	NA
WP_003813284.1|1246120_1246591_+	hydroxyphenylacetyl-CoA thioesterase PaaI	NA	NA	NA	NA	NA
WP_010931072.1|1246665_1247979_+	phenylacetate--CoA ligase	NA	NA	NA	NA	NA
WP_010931071.1|1248032_1248638_-	fimbrial major subunit FimX	NA	NA	NA	NA	NA
WP_010927663.1|1248954_1249905_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931070.1|1249901_1250852_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931069.1|1251112_1252141_-	DctP family TRAP transporter solute-binding subunit	NA	NA	NA	NA	NA
WP_010931068.1|1252220_1253519_-	TRAP transporter large permease	NA	NA	NA	NA	NA
WP_003816847.1|1253515_1254097_-	TRAP transporter small permease	NA	NA	NA	NA	NA
WP_010931067.1|1254409_1258456_+	phosphoribosylformylglycinamidine synthase	NA	A9YX36	Burkholderia_phage	67.4	6.3e-160
WP_010931066.1|1258696_1266358_+	hemagglutinin repeat-containing protein	NA	A0A0R6PJK4	Moraxella_phage	30.9	7.3e-24
WP_005012067.1|1266354_1267305_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931065.1|1268444_1268918_-	MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931064.1|1269057_1269678_-	cupin domain-containing protein	NA	NA	NA	NA	NA
WP_010931063.1|1269813_1270614_+	aldolase	NA	NA	NA	NA	NA
WP_003810897.1|1270668_1271760_+	TRAP transporter substrate-binding protein DctP	NA	NA	NA	NA	NA
WP_010931062.1|1271781_1272225_-	6-carboxytetrahydropterin synthase QueD	NA	NA	NA	NA	NA
WP_010931061.1|1272253_1272886_-	7-carboxy-7-deazaguanine synthase	NA	NA	NA	NA	NA
WP_003810909.1|1272996_1273413_+|tRNA	aminoacyl-tRNA hydrolase	tRNA	NA	NA	NA	NA
WP_010931060.1|1273405_1274098_+	DUF2238 domain-containing protein	NA	NA	NA	NA	NA
WP_010931059.1|1274204_1274579_+	MAPEG family protein	NA	NA	NA	NA	NA
WP_010931058.1|1274655_1275465_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931057.1|1275560_1276505_+	dihydrodipicolinate synthase family protein	NA	NA	NA	NA	NA
WP_003816577.1|1276543_1277515_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003810921.1|1277605_1278043_-	carboxypeptidase regulatory-like domain-containing protein	NA	NA	NA	NA	NA
WP_029443733.1|1278101_1278983_-	NRDE family protein	NA	NA	NA	NA	NA
WP_010931054.1|1279986_1280847_+	amidohydrolase	NA	NA	NA	NA	NA
WP_010931053.1|1280879_1282262_+	FAD-dependent oxidoreductase	NA	A0A2P0ZL82	Lactobacillus_phage	28.4	7.9e-30
WP_010931052.1|1282258_1283278_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019247407.1|1283650_1284145_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010931051.1|1284152_1284893_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931050.1|1284973_1286578_-	glycerol-3-phosphate dehydrogenase/oxidase	NA	NA	NA	NA	NA
WP_010931049.1|1286617_1287406_-	DeoR family transcriptional regulator	NA	A0A077SK06	Escherichia_phage	30.4	2.0e-22
WP_010931048.1|1288608_1289697_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	28.1	9.7e-15
WP_010931047.1|1290577_1291390_+	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
WP_004568502.1|1291402_1291711_+	DUF2160 domain-containing protein	NA	NA	NA	NA	NA
WP_010931046.1|1291828_1293559_+	carbohydrate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019249399.1|1293560_1294706_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003810957.1|1295624_1296092_-	winged helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_019247521.1|1296227_1297610_+	D-amino acid dehydrogenase	NA	NA	NA	NA	NA
WP_014486086.1|1297606_1298731_+	DNA repair exonuclease	NA	NA	NA	NA	NA
WP_010931042.1|1298727_1301364_+	AAA family ATPase	NA	NA	NA	NA	NA
WP_010931070.1|1301779_1302730_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931041.1|1306476_1307088_-	DUF2239 family protein	NA	NA	NA	NA	NA
WP_003812368.1|1307310_1308771_+	IMP dehydrogenase	NA	A0A1V0SHK8	Klosneuvirus	41.3	1.6e-97
WP_010931040.1|1308867_1310460_+	glutamine-hydrolyzing GMP synthase	NA	A0A1V0SH76	Hokovirus	33.3	1.0e-17
WP_019247974.1|1310813_1311071_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003816876.1|1311072_1312413_+	type II toxin-antitoxin system HipA family toxin	NA	NA	NA	NA	NA
WP_010931038.1|1312508_1313198_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247976.1|1313210_1314641_+	MFS transporter	NA	NA	NA	NA	NA
WP_014905903.1|1316365_1317187_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931036.1|1317197_1318769_+	amidohydrolase	NA	NA	NA	NA	NA
WP_010931035.1|1318797_1319775_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931034.1|1319801_1320605_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	38.2	2.7e-30
WP_010931033.1|1320601_1321396_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_003816890.1|1321403_1322639_+	DUF521 domain-containing protein	NA	NA	NA	NA	NA
WP_010931032.1|1322631_1323066_+	DUF126 domain-containing protein	NA	NA	NA	NA	NA
WP_005013747.1|1323815_1324766_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 13
NZ_CP010842	Bordetella pertussis strain H489 chromosome, complete genome	4106364	1328877	1369546	4106364	transposase,tRNA	Salmonella_phage(33.33%)	42	NA	NA
WP_005013747.1|1328877_1329828_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931029.1|1329868_1330939_+	FUSC family protein	NA	NA	NA	NA	NA
WP_010931028.1|1330961_1331840_-	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
WP_010931027.1|1332011_1332983_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010931026.1|1333145_1333988_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931025.1|1334149_1334830_+	cupin domain-containing protein	NA	NA	NA	NA	NA
WP_010931024.1|1334823_1335993_+	FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010931023.1|1335989_1337021_+	alcohol dehydrogenase catalytic domain-containing protein	NA	A0A2K9L339	Tupanvirus	27.8	1.8e-26
WP_010931022.1|1337064_1338306_+	MFS transporter	NA	NA	NA	NA	NA
WP_010931021.1|1338340_1339873_-	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
WP_010931020.1|1339953_1340577_+	FMN-binding negative transcriptional regulator	NA	NA	NA	NA	NA
WP_010931019.1|1340607_1341219_+	LysE family translocator	NA	NA	NA	NA	NA
WP_010931018.1|1341254_1341725_+	DUF1801 domain-containing protein	NA	NA	NA	NA	NA
WP_019248147.1|1342156_1343161_+	M20/M25/M40 family metallo-hydrolase	NA	NA	NA	NA	NA
WP_010931017.1|1343197_1344712_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931016.1|1344715_1345675_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931015.1|1345703_1346507_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931014.1|1346508_1348143_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	31.1	2.9e-15
WP_010931013.1|1348226_1349288_+	LacI family DNA-binding transcriptional regulator	NA	NA	NA	NA	NA
WP_004567322.1|1349486_1349756_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931012.1|1349759_1350284_+	DNA-binding protein	NA	J9Q7G7	Salmonella_phage	32.9	6.5e-09
WP_005012067.1|1350699_1351650_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931011.1|1351646_1352681_-	metal-dependent hydrolase	NA	NA	NA	NA	NA
WP_003816758.1|1352789_1353428_+	DedA family protein	NA	NA	NA	NA	NA
WP_019247724.1|1353722_1353950_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_003820420.1|1354072_1354786_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_005013747.1|1355030_1355981_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931009.1|1356084_1356366_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931008.1|1356480_1357929_-	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
WP_005012808.1|1358039_1358990_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003816756.1|1358986_1359436_-	dUTP diphosphatase	NA	S4TNT3	Salmonella_phage	67.2	3.7e-45
WP_010929584.1|1359630_1360581_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812834.1|1360916_1361114_+	50S ribosomal protein L35	NA	NA	NA	NA	NA
WP_003812832.1|1361129_1361489_+	50S ribosomal protein L20	NA	NA	NA	NA	NA
WP_010926359.1|1361563_1362586_+|tRNA	phenylalanine--tRNA ligase subunit alpha	tRNA	A0A2H4UW22	Bodo_saltans_virus	38.6	1.0e-26
WP_010931007.1|1362598_1365016_+|tRNA	phenylalanine--tRNA ligase subunit beta	tRNA	NA	NA	NA	NA
WP_010931006.1|1365021_1365363_+	integration host factor subunit alpha	NA	A0A0H3UZA0	Geobacillus_virus	42.2	2.8e-13
WP_003812822.1|1365421_1365832_+	MerR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931005.1|1366331_1367423_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931004.1|1367606_1368203_+	lipoprotein	NA	NA	NA	NA	NA
WP_004567479.1|1368302_1368485_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929591.1|1368595_1369546_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 14
NZ_CP010842	Bordetella pertussis strain H489 chromosome, complete genome	4106364	1414484	1470890	4106364	transposase	Enterococcus_phage(16.67%)	51	NA	NA
WP_010930208.1|1414484_1415435_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930975.1|1415437_1416391_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019247213.1|1416418_1417270_+	bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD	NA	A0A249XZQ2	Enterococcus_phage	37.6	2.1e-33
WP_010929099.1|1417275_1418304_-	Ldh family oxidoreductase	NA	NA	NA	NA	NA
WP_010930973.1|1418300_1419344_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930972.1|1419411_1420437_-	dipeptidase	NA	NA	NA	NA	NA
WP_077598820.1|1420674_1421625_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930971.1|1421767_1423021_+	sarcosine oxidase subunit beta family protein	NA	NA	NA	NA	NA
WP_003821030.1|1423031_1423304_+	sarcosine oxidase subunit delta	NA	NA	NA	NA	NA
WP_010930970.1|1423300_1426240_+	sarcosine oxidase subunit alpha family protein	NA	NA	NA	NA	NA
WP_010930969.1|1426247_1426847_+	sarcosine oxidase subunit gamma	NA	NA	NA	NA	NA
WP_010929093.1|1426847_1427696_+	formyltetrahydrofolate deformylase	NA	NA	NA	NA	NA
WP_019248827.1|1427733_1428720_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930967.1|1428735_1430172_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_010930966.1|1430184_1430976_+	alpha/beta fold hydrolase	NA	NA	NA	NA	NA
WP_010930965.1|1431294_1432350_+	UDP-N-acetylmuramate dehydrogenase	NA	NA	NA	NA	NA
WP_010930964.1|1432386_1433196_-	4-hydroxy-tetrahydrodipicolinate reductase	NA	NA	NA	NA	NA
WP_010930963.1|1433196_1433745_-	outer membrane protein assembly factor BamE	NA	NA	NA	NA	NA
WP_003814098.1|1433895_1434315_+	ferric iron uptake transcriptional regulator	NA	NA	NA	NA	NA
WP_010930962.1|1434389_1436051_-	DNA repair protein RecN	NA	NA	NA	NA	NA
WP_010930961.1|1436066_1436966_-	NAD kinase	NA	NA	NA	NA	NA
WP_003814090.1|1437080_1438085_+	heat-inducible transcriptional repressor HrcA	NA	NA	NA	NA	NA
WP_023853055.1|1438142_1439231_+	ferrochelatase	NA	NA	NA	NA	NA
WP_023853049.1|1439312_1439555_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003814083.1|1439696_1440251_+	nucleotide exchange factor GrpE	NA	NA	NA	NA	NA
WP_010926991.1|1440258_1440639_+	thioredoxin family protein	NA	NA	NA	NA	NA
WP_010930959.1|1440729_1442655_+	molecular chaperone DnaK	NA	A0A0N9QXN8	Chrysochromulina_ericina_virus	50.3	1.1e-146
WP_010929084.1|1442755_1443889_+	molecular chaperone DnaJ	NA	A0A1V0SBY2	Catovirus	60.8	3.9e-19
WP_010930957.1|1444057_1446808_-	insulinase family protein	NA	A0A2K9LA15	Tupanvirus	28.1	1.5e-19
WP_003814072.1|1447140_1447515_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930956.1|1447552_1448095_+	N-acetyltransferase	NA	NA	NA	NA	NA
WP_010930955.1|1448098_1449271_-	VWA domain-containing protein	NA	NA	NA	NA	NA
WP_003814066.1|1449292_1450180_-	MoxR family ATPase	NA	NA	NA	NA	NA
WP_005013747.1|1450272_1451223_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023999730.1|1451240_1451393_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003814065.1|1451389_1451743_+	cytochrome c	NA	NA	NA	NA	NA
WP_003814063.1|1451755_1452118_+	cytochrome c	NA	NA	NA	NA	NA
WP_003814061.1|1452159_1452585_-	DUF1841 family protein	NA	NA	NA	NA	NA
WP_003814059.1|1452787_1454044_+	NADP-dependent isocitrate dehydrogenase	NA	Q77Z09	Phage_21	64.8	1.2e-11
WP_003814057.1|1454242_1455223_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005015028.1|1455372_1456614_+	O-antigen ligase family protein	NA	NA	NA	NA	NA
WP_010931070.1|1456712_1457663_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814052.1|1457671_1458367_-	two-component system response regulator KdpE	NA	NA	NA	NA	NA
WP_003814050.1|1461188_1461788_-	potassium-transporting ATPase subunit KdpC	NA	NA	NA	NA	NA
WP_010930950.1|1461798_1463964_-	potassium-transporting ATPase subunit KdpB	NA	M1HBF8	Paramecium_bursaria_Chlorella_virus	27.1	1.2e-24
WP_010930949.1|1463987_1465772_-	potassium-transporting ATPase subunit KdpA	NA	NA	NA	NA	NA
WP_017685545.1|1465771_1465861_-	K(+)-transporting ATPase subunit F	NA	NA	NA	NA	NA
WP_003814042.1|1466555_1466828_+	DUF4212 domain-containing protein	NA	NA	NA	NA	NA
WP_003814040.1|1466827_1468894_+	cation acetate symporter	NA	NA	NA	NA	NA
WP_010929577.1|1468890_1469841_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|1469939_1470890_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 15
NZ_CP010842	Bordetella pertussis strain H489 chromosome, complete genome	4106364	1546350	1606262	4106364	transposase,tRNA	Streptococcus_virus(12.5%)	52	NA	NA
WP_010930416.1|1546350_1546839_+|tRNA	Cys-tRNA(Pro) deacylase	tRNA	NA	NA	NA	NA
WP_019248504.1|1546956_1547535_+	DJ-1/PfpI family protein	NA	NA	NA	NA	NA
WP_010930418.1|1547640_1548009_+	ribbon-helix-helix domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|1548107_1549058_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994932.1|1549064_1550177_-	D-alanyl-D-alanine endopeptidase	NA	NA	NA	NA	NA
WP_010930419.1|1550863_1552066_+	MFS transporter	NA	NA	NA	NA	NA
WP_004568212.1|1552101_1552248_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930420.1|1552269_1554930_+	PD-(D/E)XK nuclease family protein	NA	NA	NA	NA	NA
WP_010930421.1|1554942_1558347_+	UvrD-helicase domain-containing protein	NA	NA	NA	NA	NA
WP_023995689.1|1559014_1561240_+	DNA polymerase III subunit gamma/tau	NA	A0A1U9WR94	Streptococcus_virus	38.5	1.2e-43
WP_010930423.1|1561286_1561613_+	YbaB/EbfC family nucleoid-associated protein	NA	NA	NA	NA	NA
WP_010930424.1|1561663_1562272_+	recombination protein RecR	NA	NA	NA	NA	NA
WP_005013747.1|1562370_1563321_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930425.1|1563390_1564155_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930426.1|1564151_1564751_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930427.1|1564854_1565706_-	neutral zinc metallopeptidase	NA	A0A1I9SA48	Rhodococcus_phage	35.3	7.0e-37
WP_010928449.1|1565765_1566392_+	threonylcarbamoyl-AMP synthase	NA	NA	NA	NA	NA
WP_005012067.1|1566388_1567339_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|1567437_1568388_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019249265.1|1568486_1569599_-	DUF1513 domain-containing protein	NA	NA	NA	NA	NA
WP_019248041.1|1569588_1570590_-	imelysin family protein	NA	NA	NA	NA	NA
WP_019247498.1|1570695_1572207_-	c-type cytochrome	NA	NA	NA	NA	NA
WP_023853587.1|1572203_1573508_-	imelysin	NA	NA	NA	NA	NA
WP_010930431.1|1573619_1574180_-	membrane protein	NA	NA	NA	NA	NA
WP_010930432.1|1574447_1575002_+	NAD(P)H-dependent oxidoreductase	NA	A0A2P0ZL82	Lactobacillus_phage	32.0	1.7e-15
WP_010930433.1|1575457_1575673_-	dodecin domain-containing protein	NA	NA	NA	NA	NA
WP_033446228.1|1575927_1578525_+	DNA mismatch repair protein MutS	NA	A0A1V0SDQ0	Indivirus	22.6	1.5e-21
WP_010930435.1|1578521_1579709_+	cupin domain-containing protein	NA	NA	NA	NA	NA
WP_019248658.1|1580367_1580982_+	fimbrial protein	NA	NA	NA	NA	NA
WP_010930437.1|1581070_1582198_-	outer membrane protein assembly factor BamC	NA	NA	NA	NA	NA
WP_033446216.1|1582209_1583115_-	4-hydroxy-tetrahydrodipicolinate synthase	NA	NA	NA	NA	NA
WP_005012067.1|1584007_1584958_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930439.1|1585139_1585892_+	glutamine ABC transporter substrate-binding protein GlnH	NA	NA	NA	NA	NA
WP_003811112.1|1585960_1586620_+	glutamine ABC transporter permease GlnP	NA	NA	NA	NA	NA
WP_003811113.1|1586616_1587345_+	glutamine ABC transporter ATP-binding protein GlnQ	NA	G9BWD6	Planktothrix_phage	39.3	3.3e-35
WP_010930440.1|1587357_1589637_-	bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase	NA	A0A1B1IUF0	uncultured_Mediterranean_phage	32.1	5.9e-06
WP_010930441.1|1589661_1589865_-	DNA-directed RNA polymerase subunit omega	NA	NA	NA	NA	NA
WP_010930442.1|1589906_1590539_-	guanylate kinase	NA	A0A218KC48	Bacillus_phage	33.9	2.4e-13
WP_010930443.1|1590674_1591592_-	c-type cytochrome	NA	NA	NA	NA	NA
WP_010930444.1|1591588_1592302_-	c-type cytochrome	NA	NA	NA	NA	NA
WP_003811135.1|1592539_1593310_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_003811137.1|1593314_1593914_-	C40 family peptidase	NA	A0A0A8WF62	Clostridium_phage	41.6	1.4e-20
WP_003811138.1|1594158_1595649_+	AMP nucleosidase	NA	NA	NA	NA	NA
WP_010926696.1|1595707_1595992_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010930445.1|1596129_1596285_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003811148.1|1596557_1597484_-	YicC family protein	NA	NA	NA	NA	NA
WP_003811149.1|1597620_1598361_+	ribonuclease PH	NA	NA	NA	NA	NA
WP_010930446.1|1598527_1599904_-	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_003811152.1|1600085_1600991_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930448.1|1602642_1604445_-	EAL domain-containing protein	NA	NA	NA	NA	NA
WP_010930449.1|1604571_1605213_+	RdgB/HAM1 family non-canonical purine NTP pyrophosphatase	NA	NA	NA	NA	NA
WP_005012808.1|1605311_1606262_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 16
NZ_CP010842	Bordetella pertussis strain H489 chromosome, complete genome	4106364	1651434	1707025	4106364	transposase	Brazilian_cedratvirus(25.0%)	47	NA	NA
WP_005013747.1|1651434_1652385_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930486.1|1652443_1653217_+	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_014486074.1|1653209_1654766_+	LTA synthase family protein	NA	NA	NA	NA	NA
WP_005013747.1|1654762_1655713_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003810741.1|1657039_1657642_-	TetR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003810743.1|1657881_1658583_-	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
WP_003816696.1|1658576_1659359_-	ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	25.8	2.0e-09
WP_005012808.1|1659543_1660494_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930483.1|1660592_1661330_-	TerC family protein	NA	A0A0S4KZH7	Pseudomonas_phage	46.6	4.1e-41
WP_010926609.1|1661519_1662278_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930482.1|1662324_1663314_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930481.1|1663491_1664460_-	transporter	NA	NA	NA	NA	NA
WP_010930480.1|1665999_1666968_+	AAA family ATPase	NA	NA	NA	NA	NA
WP_010930479.1|1666976_1667918_+	DUF58 domain-containing protein	NA	NA	NA	NA	NA
WP_010930478.1|1668391_1669402_+	VWA domain-containing protein	NA	NA	NA	NA	NA
WP_010930477.1|1669392_1670907_+	VWA domain-containing protein	NA	NA	NA	NA	NA
WP_010930476.1|1670903_1672250_+	BatD family protein	NA	NA	NA	NA	NA
WP_010930475.1|1672252_1673287_+	haloacid dehalogenase-like hydrolase	NA	NA	NA	NA	NA
WP_023852967.1|1673336_1674962_+	arylsulfatase	NA	A0A2P0VMN7	Tetraselmis_virus	52.2	2.0e-149
WP_005012067.1|1675514_1676465_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930487.1|1676569_1677517_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247865.1|1677570_1679385_-	sensor histidine kinase	NA	NA	NA	NA	NA
WP_010930489.1|1679377_1680052_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_023995112.1|1680181_1683256_+	autotransporter SphB2	NA	NA	NA	NA	NA
WP_019247905.1|1683269_1683569_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010930492.1|1683883_1684507_-	glutathione S-transferase family protein	NA	NA	NA	NA	NA
WP_010930493.1|1684750_1685620_+	TauD/TfdA family dioxygenase	NA	NA	NA	NA	NA
WP_010930494.1|1685597_1686542_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247909.1|1686627_1687554_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019247910.1|1687666_1688446_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930497.1|1688436_1689633_-	alpha-hydroxy-acid oxidizing protein	NA	NA	NA	NA	NA
WP_010930498.1|1689663_1690614_-	fumarylacetoacetate hydrolase family protein	NA	NA	NA	NA	NA
WP_010930499.1|1690835_1691525_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930500.1|1691589_1692345_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930501.1|1692396_1693389_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930502.1|1693398_1694352_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811538.1|1694467_1695430_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019249376.1|1696831_1697260_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|1697256_1698207_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_170954298.1|1698500_1699238_-	arsenical resistance protein ArsH	NA	A0A2H4J5V6	uncultured_Caudovirales_phage	68.2	1.3e-87
WP_010930504.1|1699661_1700849_-	MFS transporter	NA	NA	NA	NA	NA
WP_019249653.1|1700852_1701233_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010930506.1|1702952_1703924_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930507.1|1703937_1704651_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930508.1|1704655_1705573_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811452.1|1705679_1705976_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929588.1|1706074_1707025_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 17
NZ_CP010842	Bordetella pertussis strain H489 chromosome, complete genome	4106364	2027200	2061812	4106364	transposase,tRNA	Moraxella_phage(18.18%)	32	NA	NA
WP_010930522.1|2027200_2028151_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930804.1|2028249_2030850_-	TRAP transporter fused permease subunit	NA	NA	NA	NA	NA
WP_003818658.1|2030956_2031961_-	TAXI family TRAP transporter solute-binding subunit	NA	NA	NA	NA	NA
WP_010930803.1|2032069_2033410_-	aspartate aminotransferase family protein	NA	A0A1V0SKB7	Klosneuvirus	22.8	8.8e-18
WP_003818661.1|2033450_2034479_-	MurR/RpiR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930802.1|2034674_2035220_+	winged helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010930801.1|2035216_2035777_+	diaminobutyrate acetyltransferase	NA	NA	NA	NA	NA
WP_010930048.1|2035875_2036826_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930523.1|2036863_2037451_+	YigZ family protein	NA	A0A1X9I5T8	Streptococcus_phage	35.8	4.7e-16
WP_003811007.1|2037468_2037852_-	thioredoxin family protein	NA	V9SJ74	Achromobacter_phage	25.8	8.1e-09
WP_003811011.1|2039211_2040504_-	NCS2 family permease	NA	A0A0R6PHV4	Moraxella_phage	36.0	1.7e-66
WP_010930524.1|2040638_2041679_+|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD	tRNA	A0A0R6PI74	Moraxella_phage	51.3	6.1e-91
WP_010929632.1|2041776_2042793_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003811015.1|2043060_2043708_-	glycerol-3-phosphate 1-O-acyltransferase PlsY	NA	NA	NA	NA	NA
WP_010930526.1|2043833_2044592_+	5'/3'-nucleotidase SurE	NA	A0A1B1ITZ2	uncultured_Mediterranean_phage	51.2	1.4e-68
WP_019247478.1|2044576_2045356_+	protein-L-isoaspartate(D-aspartate) O-methyltransferase	NA	A0A1B1IU40	uncultured_Mediterranean_phage	46.9	4.8e-32
WP_003811022.1|2045373_2046258_+	peptidoglycan DD-metalloendopeptidase family protein	NA	A0A292GJG6	Xanthomonas_phage	49.5	4.6e-15
WP_019248494.1|2046254_2047034_+	3'-5' exonuclease	NA	NA	NA	NA	NA
WP_010930528.1|2047138_2047738_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930529.1|2048026_2048779_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003816525.1|2048897_2050298_+	23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD	NA	A0A2K5B251	Erysipelothrix_phage	26.5	7.3e-31
WP_003816523.1|2050321_2050720_-	Cu(I)-responsive transcriptional regulator	NA	NA	NA	NA	NA
WP_003811035.1|2050895_2051096_+	heavy-metal-associated domain-containing protein	NA	NA	NA	NA	NA
WP_010930530.1|2051234_2051963_+	redoxin family protein	NA	A0A1D8KSL1	Synechococcus_phage	56.8	9.6e-43
WP_003816520.1|2052096_2053512_+	dihydrolipoyl dehydrogenase	NA	NA	NA	NA	NA
WP_003816518.1|2053515_2054379_-	23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ	NA	NA	NA	NA	NA
WP_004568486.1|2054391_2055141_-	glycerophosphodiester phosphodiesterase	NA	A0A2H4PGQ5	Escherichia_phage	27.8	1.5e-14
WP_019247881.1|2055323_2057339_+	SurA N-terminal domain-containing protein	NA	NA	NA	NA	NA
WP_019247882.1|2057320_2057989_-	arylesterase	NA	NA	NA	NA	NA
WP_005012067.1|2058763_2059714_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|2059812_2060763_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929591.1|2060861_2061812_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 18
NZ_CP010842	Bordetella pertussis strain H489 chromosome, complete genome	4106364	2075313	2140861	4106364	transposase,tRNA,protease	Lake_Baikal_phage(20.0%)	58	NA	NA
WP_005012808.1|2075313_2076264_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930538.1|2076260_2076734_-	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_033446178.1|2076895_2077834_+	membrane protein	NA	NA	NA	NA	NA
WP_010930540.1|2077835_2079044_-	bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC	NA	Q9HH70	Methanothermobacter_phage	30.0	3.8e-36
WP_010930541.1|2079148_2079655_-	lipoprotein signal peptidase	NA	NA	NA	NA	NA
WP_010930542.1|2079657_2082519_-|tRNA	isoleucine--tRNA ligase	tRNA	A0A1V0SJ93	Klosneuvirus	25.5	1.0e-71
WP_010930543.1|2082508_2083474_-	bifunctional riboflavin kinase/FAD synthetase	NA	NA	NA	NA	NA
WP_076879626.1|2083533_2085528_+	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	33.3	4.4e-21
WP_005012067.1|2085626_2086577_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930545.1|2086573_2086948_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003812548.1|2087209_2088418_+	fatty acid desaturase	NA	NA	NA	NA	NA
WP_003812546.1|2088414_2090715_+	UvrD-helicase domain-containing protein	NA	A7KV33	Bacillus_phage	35.9	9.9e-110
WP_010926400.1|2090767_2093380_-	TonB-dependent receptor	NA	NA	NA	NA	NA
WP_010930546.1|2093739_2095665_-	ATP-binding cassette domain-containing protein	NA	A0A2K9L0W2	Tupanvirus	31.8	1.1e-66
WP_019247938.1|2095661_2096558_-	50S ribosomal protein L3 N(5)-glutamine methyltransferase	NA	NA	NA	NA	NA
WP_010930548.1|2096564_2097704_-	succinyl-diaminopimelate desuccinylase	NA	NA	NA	NA	NA
WP_003812536.1|2097703_2098525_-	2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase	NA	NA	NA	NA	NA
WP_010930549.1|2100094_2100424_-	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
WP_010930550.1|2100806_2102063_+	autotransporter Phg	NA	NA	NA	NA	NA
WP_003812526.1|2102137_2102419_+	membrane protein	NA	NA	NA	NA	NA
WP_003812524.1|2102460_2102781_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930551.1|2103087_2103291_+	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	62.1	1.6e-16
WP_003812519.1|2103374_2103941_+	DUF924 family protein	NA	NA	NA	NA	NA
WP_010930553.1|2104286_2104487_+	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	64.4	7.4e-14
WP_010930554.1|2104598_2105159_-	TIGR00645 family protein	NA	K4K6D8	Caulobacter_phage	33.7	1.0e-23
WP_010930555.1|2105355_2106666_+	trigger factor	NA	NA	NA	NA	NA
WP_003812508.1|2106668_2107322_+	ATP-dependent Clp endopeptidase proteolytic subunit ClpP	NA	A0A223W000	Agrobacterium_phage	57.5	6.8e-56
WP_010930556.1|2107426_2108731_+|protease	ATP-dependent Clp protease ATP-binding subunit ClpX	protease	G3M9Z9	Bacillus_virus	53.8	3.2e-129
WP_010930557.1|2108919_2111373_+	endopeptidase La	NA	A0A0R6PGP8	Moraxella_phage	52.0	1.5e-220
WP_019247936.1|2111496_2112447_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930559.1|2112674_2113898_+	CoA transferase	NA	NA	NA	NA	NA
WP_010930560.1|2113963_2114935_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930561.1|2115001_2115403_+	MaoC family dehydratase	NA	NA	NA	NA	NA
WP_015063637.1|2115416_2116220_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003812491.1|2116216_2116648_+	OB-fold domain-containing protein	NA	NA	NA	NA	NA
WP_010930563.1|2116644_2117802_+	thiolase	NA	NA	NA	NA	NA
WP_010930564.1|2117823_2118600_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930565.1|2120812_2121481_+	3-oxoacid CoA-transferase subunit A	NA	NA	NA	NA	NA
WP_003812478.1|2121473_2122115_+	CoA transferase subunit B	NA	NA	NA	NA	NA
WP_019247935.1|2122149_2122881_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247934.1|2122898_2123111_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|2123681_2124632_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930566.1|2126189_2126840_-	transcriptional repressor LexA	NA	A0A2H4JG58	uncultured_Caudovirales_phage	50.7	3.3e-10
WP_019247244.1|2126968_2128171_-	aspartate/tyrosine/aromatic aminotransferase	NA	NA	NA	NA	NA
WP_010930568.1|2128248_2130285_+	excinuclease ABC subunit UvrB	NA	NA	NA	NA	NA
WP_010930569.1|2130537_2131029_+	low molecular weight phosphotyrosine protein phosphatase	NA	NA	NA	NA	NA
WP_003812463.1|2131244_2131757_+	Fe-S cluster assembly transcriptional regulator IscR	NA	NA	NA	NA	NA
WP_010930570.1|2131774_2132986_+	IscS subfamily cysteine desulfurase	NA	NA	NA	NA	NA
WP_003812460.1|2133023_2133434_+	Fe-S cluster assembly scaffold IscU	NA	A0A218MKD1	uncultured_virus	79.0	7.5e-53
WP_003812458.1|2133435_2133759_+	iron-sulfur cluster assembly protein IscA	NA	A0A2H4N7N5	Lake_Baikal_phage	52.8	6.8e-25
WP_003812456.1|2133761_2134274_+	Fe-S protein assembly co-chaperone HscB	NA	NA	NA	NA	NA
WP_010930571.1|2134403_2136266_+	Fe-S protein assembly chaperone HscA	NA	A0A0N9QXN8	Chrysochromulina_ericina_virus	42.4	3.0e-101
WP_003812453.1|2136275_2136617_+	ISC system 2Fe-2S type ferredoxin	NA	NA	NA	NA	NA
WP_003812452.1|2136616_2136811_+	Fe-S cluster assembly protein IscX	NA	NA	NA	NA	NA
WP_010930572.1|2136935_2137829_+	methylglyoxal synthase	NA	NA	NA	NA	NA
WP_005013747.1|2137825_2138776_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930573.1|2138900_2139710_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010929577.1|2139910_2140861_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 19
NZ_CP010842	Bordetella pertussis strain H489 chromosome, complete genome	4106364	2168644	2220441	4106364	transposase,tRNA,protease	Klosneuvirus(22.22%)	50	NA	NA
WP_010930590.1|2168644_2171269_+|tRNA	alanine--tRNA ligase	tRNA	A0A1V0SK38	Klosneuvirus	39.4	1.7e-81
WP_004568544.1|2171255_2171510_+	sulfurtransferase TusA family protein	NA	NA	NA	NA	NA
WP_010930591.1|2171576_2172158_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010926757.1|2172461_2172722_+	30S ribosomal protein S16	NA	NA	NA	NA	NA
WP_014905757.1|2172887_2173511_+	ribosome maturation factor RimM	NA	NA	NA	NA	NA
WP_003816734.1|2173510_2174284_+|tRNA	tRNA (guanosine(37)-N1)-methyltransferase TrmD	tRNA	NA	NA	NA	NA
WP_010930593.1|2174280_2175489_-	aminotransferase class V-fold PLP-dependent enzyme	NA	NA	NA	NA	NA
WP_010930594.1|2175514_2175988_-	RidA family protein	NA	NA	NA	NA	NA
WP_005012067.1|2176061_2177012_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930796.1|2177110_2178460_-	two-component sensor histidine kinase	NA	NA	NA	NA	NA
WP_023852900.1|2179225_2179981_+	MipA/OmpV family protein	NA	NA	NA	NA	NA
WP_010930794.1|2180073_2182956_-|tRNA	valine--tRNA ligase	tRNA	A0A1V0SK04	Klosneuvirus	37.1	3.7e-138
WP_003810689.1|2183278_2183704_+	nucleoside-diphosphate kinase	NA	D2E8E1	Anguillid_herpesvirus	43.2	2.1e-21
WP_004568542.1|2183731_2184880_+	23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN	NA	NA	NA	NA	NA
WP_003810693.1|2184876_2185383_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010930793.1|2185389_2186685_+	flavodoxin-dependent (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase	NA	NA	NA	NA	NA
WP_023995843.1|2186743_2188030_+|tRNA	histidine--tRNA ligase	tRNA	NA	NA	NA	NA
WP_010930791.1|2188031_2188670_+	tetratricopeptide repeat protein	NA	NA	NA	NA	NA
WP_003810701.1|2188672_2189833_+	outer membrane protein assembly factor BamB	NA	NA	NA	NA	NA
WP_003810703.1|2189859_2191215_+	ribosome biogenesis GTPase Der	NA	NA	NA	NA	NA
WP_010930790.1|2191218_2192289_+	histidinol-phosphate transaminase	NA	A0A1X6WGT4	Pacmanvirus	25.7	2.5e-15
WP_003810707.1|2192427_2192664_+	RNA chaperone Hfq	NA	NA	NA	NA	NA
WP_010930789.1|2192751_2193858_+	GTPase HflX	NA	NA	NA	NA	NA
WP_010930788.1|2193823_2195128_+|protease	FtsH protease activity modulator HflK	protease	NA	NA	NA	NA
WP_010930787.1|2195146_2196046_+|protease	protease modulator HflC	protease	NA	NA	NA	NA
WP_010930786.1|2196229_2197387_+	ATP phosphoribosyltransferase regulatory subunit	NA	NA	NA	NA	NA
WP_023852902.1|2197463_2198759_+	adenylosuccinate synthase	NA	A0A160ER07	Powai_lake_megavirus	33.5	3.0e-63
WP_003810720.1|2198872_2199412_+	phosphoribosyltransferase	NA	NA	NA	NA	NA
WP_006218592.1|2199689_2199902_+	30S ribosomal protein S21	NA	NA	NA	NA	NA
WP_010930784.1|2199921_2201952_+	DNA primase	NA	A0A0K1LMQ9	Caulobacter_phage	41.9	1.0e-65
WP_010930783.1|2202637_2204920_+	RNA polymerase sigma factor RpoD	NA	A0A2I7SAT0	Vibrio_phage	30.1	3.2e-36
WP_003816708.1|2205329_2205629_-	hypothetical protein	NA	NA	NA	NA	NA
WP_047122784.1|2205913_2206327_+	transcriptional regulator	NA	A0A222YXG1	Escherichia_phage	59.0	3.8e-36
WP_005013747.1|2206286_2207237_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|2207335_2208286_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930782.1|2208485_2209571_+	AI-2E family transporter	NA	NA	NA	NA	NA
WP_003810400.1|2209586_2210348_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_170954295.1|2210344_2211304_-	ATP-binding cassette domain-containing protein	NA	A0A2H4PQG7	Staphylococcus_phage	33.6	1.7e-23
WP_010930780.1|2211366_2211867_-	N-acetyltransferase	NA	NA	NA	NA	NA
WP_010930779.1|2211899_2212643_-	sulfite exporter TauE/SafE family protein	NA	NA	NA	NA	NA
WP_010930778.1|2212738_2212978_-	membrane protein	NA	NA	NA	NA	NA
WP_010930777.1|2212991_2213144_-	lipoprotein	NA	NA	NA	NA	NA
WP_010930776.1|2213229_2214720_-	cytochrome c oxidase accessory protein CcoG	NA	NA	NA	NA	NA
WP_010930775.1|2214811_2215750_-	cytochrome-c oxidase, cbb3-type subunit III	NA	NA	NA	NA	NA
WP_003818560.1|2215746_2215923_-	cytochrome oxidase	NA	NA	NA	NA	NA
WP_003810383.1|2215925_2216588_-	cytochrome-c oxidase, cbb3-type subunit II	NA	NA	NA	NA	NA
WP_003810379.1|2218209_2218353_-	cbb3-type cytochrome oxidase assembly protein CcoS	NA	NA	NA	NA	NA
WP_010930774.1|2218349_2219324_-	membrane protein	NA	NA	NA	NA	NA
WP_162268682.1|2219218_2219473_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|2219490_2220441_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 20
NZ_CP010842	Bordetella pertussis strain H489 chromosome, complete genome	4106364	2226411	2282505	4106364	transposase	uncultured_Caudovirales_phage(20.0%)	53	NA	NA
WP_005012067.1|2226411_2227362_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930768.1|2228407_2230273_-	sigma-54-dependent Fis family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930767.1|2230530_2232051_+	aldehyde dehydrogenase	NA	NA	NA	NA	NA
WP_003816959.1|2232138_2232789_-	NAD(P)H-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010930766.1|2233737_2235033_+	DUF445 domain-containing protein	NA	NA	NA	NA	NA
WP_010930765.1|2235054_2235939_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930764.1|2236037_2236913_+	PhzF family phenazine biosynthesis protein	NA	NA	NA	NA	NA
WP_003816964.1|2236902_2237259_-	DUF1428 domain-containing protein	NA	NA	NA	NA	NA
WP_010930763.1|2237389_2238364_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003812228.1|2238493_2238673_-	DUF3008 family protein	NA	NA	NA	NA	NA
WP_029443822.1|2238770_2239295_+	DUF302 domain-containing protein	NA	NA	NA	NA	NA
WP_010930761.1|2239305_2240142_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003816971.1|2240254_2240626_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010930760.1|2240622_2241174_+	SRPBCC family protein	NA	NA	NA	NA	NA
WP_003816975.1|2241189_2242881_-	STAS domain-containing protein	NA	A0A2H4J153	uncultured_Caudovirales_phage	27.3	5.0e-42
WP_003816977.1|2242929_2243610_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_014905663.1|2243857_2244322_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930758.1|2244491_2245421_+	ZIP family metal transporter	NA	NA	NA	NA	NA
WP_019247659.1|2245433_2246081_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023997035.1|2246154_2247972_-	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	27.4	2.3e-37
WP_005012067.1|2248055_2249006_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929577.1|2249658_2250609_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812199.1|2250627_2250975_-	GFA family protein	NA	NA	NA	NA	NA
WP_010930755.1|2251003_2252443_-	MFS transporter	NA	A0A0M3UL24	Mycobacterium_phage	37.4	7.4e-55
WP_010930754.1|2252461_2252857_-	VOC family protein	NA	NA	NA	NA	NA
WP_003812191.1|2253031_2253640_+	LON peptidase substrate-binding domain-containing protein	NA	NA	NA	NA	NA
WP_010930753.1|2253652_2254471_+	hypothetical protein	NA	A0A1B1INV8	uncultured_Mediterranean_phage	28.8	2.3e-16
WP_010930752.1|2254422_2255397_-	AraC family transcriptional regulator	NA	NA	NA	NA	NA
WP_003812183.1|2255425_2256487_-	XdhC family protein	NA	NA	NA	NA	NA
WP_010930751.1|2256483_2258700_-	xanthine dehydrogenase family protein molybdopterin-binding subunit	NA	NA	NA	NA	NA
WP_010930750.1|2258713_2259172_-	(2Fe-2S)-binding protein	NA	NA	NA	NA	NA
WP_003812179.1|2259329_2259674_-	exported protein	NA	NA	NA	NA	NA
WP_010930749.1|2259830_2260736_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930748.1|2260822_2261836_+	pyridoxamine 5'-phosphate oxidase family protein	NA	NA	NA	NA	NA
WP_010930153.1|2263815_2264832_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_019247707.1|2264974_2266327_-	glutathione-disulfide reductase	NA	A0A2K5B2C5	Erysipelothrix_phage	27.6	2.9e-45
WP_003812172.1|2266501_2266798_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|2267935_2268886_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247855.1|2269371_2269548_-	winged helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003812044.1|2270232_2271204_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930746.1|2271207_2272062_+	polysaccharide deacetylase	NA	NA	NA	NA	NA
WP_010930745.1|2272080_2272902_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_019247853.1|2272933_2273728_+	amidase	NA	NA	NA	NA	NA
WP_076879628.1|2273776_2274382_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247851.1|2274339_2275173_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930744.1|2275458_2276964_-	M81 family metallopeptidase	NA	NA	NA	NA	NA
WP_003812032.1|2277005_2277788_-	exodeoxyribonuclease III	NA	NA	NA	NA	NA
WP_003812030.1|2277857_2278304_-	membrane protein	NA	NA	NA	NA	NA
WP_010930743.1|2278300_2279527_-	NnrS family protein	NA	NA	NA	NA	NA
WP_003812026.1|2279519_2279924_-	group III truncated hemoglobin	NA	NA	NA	NA	NA
WP_003812024.1|2280083_2280386_+	SelT/SelW/SelH family protein	NA	NA	NA	NA	NA
WP_005013747.1|2280382_2281333_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005015810.1|2281554_2282505_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 21
NZ_CP010842	Bordetella pertussis strain H489 chromosome, complete genome	4106364	2509211	2567455	4106364	transposase,tRNA	Planktothrix_phage(28.57%)	54	NA	NA
WP_005012067.1|2509211_2510162_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930388.1|2510641_2511298_-	phosphoribosylanthranilate isomerase	NA	NA	NA	NA	NA
WP_010930387.1|2511312_2512980_-	TRAP transporter large permease subunit	NA	NA	NA	NA	NA
WP_010930386.1|2512982_2513612_-	TRAP transporter small permease subunit	NA	NA	NA	NA	NA
WP_014486072.1|2513823_2514918_-	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930384.1|2515062_2515875_-|tRNA	tRNA pseudouridine(38-40) synthase TruA	tRNA	NA	NA	NA	NA
WP_023853502.1|2515878_2517582_-	FimV N-terminal domain protein	NA	NA	NA	NA	NA
WP_010930382.1|2517632_2518763_-	aspartate-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
WP_010930381.1|2518949_2520026_-	3-isopropylmalate dehydrogenase	NA	NA	NA	NA	NA
WP_010930380.1|2520107_2520758_-	3-isopropylmalate dehydratase small subunit	NA	NA	NA	NA	NA
WP_010930379.1|2520772_2522176_-	3-isopropylmalate dehydratase large subunit	NA	NA	NA	NA	NA
WP_004567445.1|2522459_2523278_-	substrate-binding domain-containing protein	NA	NA	NA	NA	NA
WP_010930378.1|2523274_2523979_-	phosphate ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.0	2.6e-13
WP_010930377.1|2524878_2525994_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_004567447.1|2526027_2526402_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930376.1|2526424_2527582_-	formate dehydrogenase subunit gamma	NA	NA	NA	NA	NA
WP_003812666.1|2527594_2527828_-	lipoprotein	NA	NA	NA	NA	NA
WP_019247523.1|2528462_2531432_-	formate dehydrogenase subunit alpha	NA	NA	NA	NA	NA
WP_023853518.1|2531446_2531656_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019248667.1|2531807_2532437_-	molecular chaperone TorD family protein	NA	NA	NA	NA	NA
WP_010930373.1|2532433_2534524_-	4Fe-4S binding protein	NA	NA	NA	NA	NA
WP_010930372.1|2534547_2535228_-	DUF3306 domain-containing protein	NA	NA	NA	NA	NA
WP_003820494.1|2535224_2535785_-	DUF3305 domain-containing protein	NA	NA	NA	NA	NA
WP_004567450.1|2535791_2536889_-	iron-sulfur cluster carrier protein ApbC	NA	NA	NA	NA	NA
WP_010930371.1|2537041_2537635_+	molybdenum cofactor guanylyltransferase MobA	NA	NA	NA	NA	NA
WP_010930370.1|2537631_2538924_+	molybdopterin molybdotransferase MoeA	NA	NA	NA	NA	NA
WP_003812685.1|2538937_2539480_+	molybdopterin-guanine dinucleotide biosynthesis protein B	NA	NA	NA	NA	NA
WP_010930369.1|2539489_2540326_-	M48 family metallopeptidase	NA	NA	NA	NA	NA
WP_003820487.1|2540359_2541421_-	chorismate synthase	NA	A0A291AU41	Pandoravirus	42.8	2.9e-80
WP_019247210.1|2541462_2542515_-	EAL domain-containing protein	NA	NA	NA	NA	NA
WP_019247209.1|2542530_2542833_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012808.1|2542974_2543925_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_162268680.1|2543942_2544107_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930368.1|2544103_2545798_+	iron ABC transporter permease	NA	NA	NA	NA	NA
WP_003809599.1|2545794_2546880_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	37.7	6.4e-27
WP_010930367.1|2546927_2547827_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003809593.1|2547837_2548482_+	histidine phosphatase family protein	NA	NA	NA	NA	NA
WP_010930366.1|2549503_2552746_-	carbamoyl-phosphate synthase large subunit	NA	NA	NA	NA	NA
WP_023852833.1|2552756_2553911_-	glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit	NA	R4TGJ8	Halovirus	35.4	3.3e-53
WP_010930364.1|2554137_2555100_+	transaldolase	NA	H6WFR1	Cyanophage	29.2	7.5e-11
WP_076879624.1|2555198_2556149_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930363.1|2556247_2557198_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930362.1|2557207_2557897_-	VIT family protein	NA	NA	NA	NA	NA
WP_003811741.1|2557956_2558394_-	PaaI family thioesterase	NA	NA	NA	NA	NA
WP_003811743.1|2558439_2559333_-	3-hydroxyisobutyrate dehydrogenase	NA	NA	NA	NA	NA
WP_023997585.1|2559380_2560553_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003811748.1|2560549_2561704_-	acyl-CoA dehydrogenase family protein	NA	NA	NA	NA	NA
WP_003811750.1|2561900_2562251_-	RnfH family protein	NA	NA	NA	NA	NA
WP_003811752.1|2562240_2562675_-	type II toxin-antitoxin system RatA family toxin	NA	NA	NA	NA	NA
WP_010930800.1|2562691_2563642_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811754.1|2563789_2564257_+	SsrA-binding protein SmpB	NA	W5RAM5	Staphylococcus_phage	45.1	6.2e-27
WP_010930360.1|2564237_2565395_-	GGDEF domain-containing protein	NA	A0A127AWB9	Bacillus_phage	36.2	2.3e-14
WP_003811759.1|2565460_2566387_-	paraslipin	NA	NA	NA	NA	NA
WP_005012067.1|2566504_2567455_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 22
NZ_CP010842	Bordetella pertussis strain H489 chromosome, complete genome	4106364	2609735	2676235	4106364	transposase	uncultured_Caudovirales_phage(40.0%)	56	NA	NA
WP_005012067.1|2609735_2610686_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811850.1|2611055_2611628_+	flagellar basal body-associated protein FliL	NA	NA	NA	NA	NA
WP_003811852.1|2611630_2612641_+	flagellar motor switch protein FliM	NA	NA	NA	NA	NA
WP_010930335.1|2612633_2613134_+	flagellar motor switch protein FliN	NA	NA	NA	NA	NA
WP_003811855.1|2613144_2613486_+	flagellar biosynthetic protein FliO	NA	NA	NA	NA	NA
WP_015041547.1|2613497_2614289_+	flagellar type III secretion system pore protein FliP	NA	NA	NA	NA	NA
WP_003811859.1|2614305_2614575_+	flagellar biosynthesis protein FliQ	NA	NA	NA	NA	NA
WP_010930333.1|2614597_2615386_+	flagellar biosynthetic protein FliR	NA	NA	NA	NA	NA
WP_010929632.1|2615432_2616449_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_014486070.1|2616665_2618108_-	PAS domain-containing protein	NA	A0A1B0V854	Salmonella_phage	41.8	1.0e-35
WP_010930332.1|2618286_2619906_-	Tar ligand binding domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	45.3	1.5e-08
WP_010930331.1|2620026_2621847_-	Tar ligand binding domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	52.6	6.4e-11
WP_010930330.1|2621925_2623458_-	flagellar hook-associated protein FlgL	NA	NA	NA	NA	NA
WP_010930329.1|2623491_2625138_-	flagellar hook-associated protein FlgK	NA	NA	NA	NA	NA
WP_010930328.1|2625207_2626230_-	flagellar assembly peptidoglycan hydrolase FlgJ	NA	A0A088F6W1	Sulfitobacter_phage	31.4	1.9e-12
WP_010930327.1|2626247_2627381_-	flagellar basal body P-ring protein FlgI	NA	NA	NA	NA	NA
WP_010930326.1|2627383_2628073_-	flagellar basal body L-ring protein FlgH	NA	NA	NA	NA	NA
WP_010930325.1|2628072_2628858_-	flagellar basal-body rod protein FlgG	NA	NA	NA	NA	NA
WP_003817181.1|2628901_2629666_-	flagellar basal body rod protein FlgF	NA	NA	NA	NA	NA
WP_003817180.1|2629704_2631126_-	flagellar hook-basal body complex protein	NA	NA	NA	NA	NA
WP_010930324.1|2631191_2631896_-	flagellar basal body rod modification protein FlgD	NA	NA	NA	NA	NA
WP_003817176.1|2631943_2632363_-	flagellar basal body rod protein FlgC	NA	NA	NA	NA	NA
WP_010930323.1|2632375_2632783_-	flagellar basal body rod protein FlgB	NA	NA	NA	NA	NA
WP_010930322.1|2632966_2633677_+	flagellar basal body P-ring formation protein FlgA	NA	NA	NA	NA	NA
WP_003817172.1|2633803_2634094_+	flagellar biosynthesis anti-sigma factor FlgM	NA	NA	NA	NA	NA
WP_003817170.1|2634111_2634594_+	flagellar protein FlgN	NA	NA	NA	NA	NA
WP_010930321.1|2639099_2640254_-	flagellar type III secretion system protein FlhB	NA	NA	NA	NA	NA
WP_010931363.1|2640559_2641576_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010930319.1|2641822_2642611_+	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003812020.1|2642677_2643358_+	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003812022.1|2643354_2644125_+	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	39.1	9.8e-30
WP_010930208.1|2644223_2645174_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811401.1|2645229_2646147_-	2-dehydropantoate 2-reductase	NA	NA	NA	NA	NA
WP_003811400.1|2646157_2647336_-	mandelate racemase/muconate lactonizing enzyme family protein	NA	NA	NA	NA	NA
WP_010930318.1|2647355_2648351_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003811396.1|2649939_2650548_+	3-isopropylmalate dehydratase small subunit	NA	NA	NA	NA	NA
WP_003811393.1|2650535_2651576_+	LacI family DNA-binding transcriptional regulator	NA	NA	NA	NA	NA
WP_003811391.1|2651593_2652556_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003811389.1|2652552_2653746_-	CoA transferase	NA	NA	NA	NA	NA
WP_010930317.1|2653742_2654540_-	citryl-CoA lyase	NA	NA	NA	NA	NA
WP_014486069.1|2654565_2655552_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930316.1|2655570_2657610_-	acetate--CoA ligase family protein	NA	NA	NA	NA	NA
WP_010930315.1|2657811_2658492_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930314.1|2658505_2659417_-	CoA ester lyase	NA	NA	NA	NA	NA
WP_003811381.1|2659413_2659992_-	NAD(P)H-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010930313.1|2660130_2661036_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930312.1|2661043_2664463_+	TM0106 family RecB-like putative nuclease	NA	NA	NA	NA	NA
WP_010930311.1|2664450_2667051_-	BP1344/BB2830 family autotransporter	NA	NA	NA	NA	NA
WP_003811375.1|2668006_2668639_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003811372.1|2669032_2669791_+	endonuclease/exonuclease/phosphatase family protein	NA	NA	NA	NA	NA
WP_003811370.1|2669787_2670990_+	cardiolipin synthase ClsB	NA	NA	NA	NA	NA
WP_010930208.1|2671177_2672128_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930310.1|2673035_2674181_+	DUF3182 family protein	NA	NA	NA	NA	NA
WP_019247449.1|2674167_2674923_+	alpha/beta fold hydrolase	NA	NA	NA	NA	NA
WP_003811361.1|2675039_2675219_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930208.1|2675284_2676235_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 23
NZ_CP010842	Bordetella pertussis strain H489 chromosome, complete genome	4106364	2874574	2947900	4106364	transposase,tRNA,protease	Catovirus(22.22%)	53	NA	NA
WP_010930211.1|2874574_2875930_-|tRNA	tryptophan--tRNA ligase	tRNA	NA	NA	NA	NA
WP_003813618.1|2877408_2878131_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930207.1|2878185_2879169_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_005012067.1|2879298_2880249_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003813621.1|2880245_2881148_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930206.1|2881235_2881994_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_023853245.1|2882006_2883098_-	cell division protein ZapE	NA	NA	NA	NA	NA
WP_003813626.1|2883195_2884623_-	dihydrolipoyl dehydrogenase	NA	A0A2K5B2C5	Erysipelothrix_phage	28.1	2.1e-41
WP_010930204.1|2884852_2886067_-	2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase	NA	NA	NA	NA	NA
WP_003813631.1|2886112_2888983_-	2-oxoglutarate dehydrogenase E1 component	NA	NA	NA	NA	NA
WP_010930202.1|2891393_2891882_-	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930201.1|2892007_2894704_+	alpha-ketoglutarate dehydrogenase	NA	NA	NA	NA	NA
WP_010930200.1|2894858_2897141_+	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
WP_019248935.1|2897315_2897939_+	serotype 2 fimbrial subunit	NA	NA	NA	NA	NA
WP_010930198.1|2898037_2898988_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812405.1|2899034_2899589_-	transcription elongation factor GreB	NA	NA	NA	NA	NA
WP_003816844.1|2899656_2900502_-	PHP domain-containing protein	NA	NA	NA	NA	NA
WP_019248398.1|2900571_2901540_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_023995083.1|2901539_2902403_-	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
WP_010930196.1|2905235_2909162_-	inverse autotransporter beta-barrel domain-containing protein	NA	NA	NA	NA	NA
WP_010930194.1|2909897_2913128_-	autotransporter SphB3	NA	NA	NA	NA	NA
WP_010928340.1|2913409_2914237_-	TatD family hydrolase	NA	NA	NA	NA	NA
WP_003812422.1|2914270_2914966_-	lipoprotein-releasing ABC transporter ATP-binding protein LolD	NA	G9BWD6	Planktothrix_phage	38.6	7.0e-35
WP_019247537.1|2914958_2916239_-	lipoprotein-releasing ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_010930192.1|2916248_2917226_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930191.1|2917207_2918908_+	single-stranded-DNA-specific exonuclease RecJ	NA	A7KV88	Bacillus_phage	28.3	1.3e-50
WP_010926448.1|2919010_2920114_+	peptide chain release factor 2	NA	NA	NA	NA	NA
WP_010926447.1|2920144_2920900_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930190.1|2920906_2922427_+|tRNA	lysine--tRNA ligase	tRNA	A0A1V0SAC0	Catovirus	36.0	1.2e-82
WP_010930189.1|2922469_2922772_+	membrane protein	NA	NA	NA	NA	NA
WP_003812436.1|2922768_2923401_-	TetR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930188.1|2923479_2925345_-	long-chain fatty acid--CoA ligase	NA	A0A1V0SBX8	Catovirus	23.3	9.3e-50
WP_020699602.1|2925341_2926136_-	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	23.3	1.2e-11
WP_010930186.1|2926164_2927280_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930185.1|2928184_2929063_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010930184.1|2929062_2929887_-	ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	22.7	1.0e-08
WP_010929591.1|2930054_2931005_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930183.1|2931217_2934067_+	EAL domain-containing protein	NA	NA	NA	NA	NA
WP_010930182.1|2934048_2934777_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_019248549.1|2934917_2936381_-	YdiU family protein	NA	A0A075BSJ0	Microcystis_phage	32.5	1.7e-43
WP_010930180.1|2936377_2936749_-	DUF2069 domain-containing protein	NA	NA	NA	NA	NA
WP_003812701.1|2936766_2938080_+	YihY family inner membrane protein	NA	NA	NA	NA	NA
WP_003812703.1|2938116_2938575_+	CBS domain-containing protein	NA	NA	NA	NA	NA
WP_155120815.1|2938529_2938670_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|2938687_2939638_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930178.1|2939634_2940648_-|tRNA	tRNA dihydrouridine(20/20a) synthase DusA	tRNA	NA	NA	NA	NA
WP_003812707.1|2940787_2941774_+	homoserine kinase	NA	NA	NA	NA	NA
WP_161633091.1|2942132_2942840_-	DUF192 domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|2943420_2944371_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003809618.1|2944522_2945125_-	YhbY family RNA-binding protein	NA	NA	NA	NA	NA
WP_010930175.1|2945143_2945776_+	RlmE family RNA methyltransferase	NA	NA	NA	NA	NA
WP_162096758.1|2945820_2946072_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930174.1|2946013_2947900_+|protease	ATP-dependent zinc metalloprotease FtsH	protease	M4QMW8	Micromonas_pusilla_virus	41.5	1.4e-109
>prophage 24
NZ_CP010842	Bordetella pertussis strain H489 chromosome, complete genome	4106364	2959625	3009238	4106364	transposase,tRNA,holin	uncultured_Mediterranean_phage(50.0%)	42	NA	NA
WP_005013747.1|2959625_2960576_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003809441.1|2960602_2961067_-	barstar family protein	NA	NA	NA	NA	NA
WP_014486065.1|2962273_2964562_-	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
WP_010930165.1|2964678_2965551_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930164.1|2965593_2966748_+	pyridoxal phosphate-dependent aminotransferase	NA	NA	NA	NA	NA
WP_010930163.1|2966782_2967613_-	lytic transglycosylase domain-containing protein	NA	NA	NA	NA	NA
WP_023853525.1|2967696_2969241_+	4-hydroxy-3-polyprenylbenzoate decarboxylase	NA	NA	NA	NA	NA
WP_010930161.1|2969283_2969643_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003819794.1|2969644_2970058_-|holin	phage holin family protein	holin	NA	NA	NA	NA
WP_003809432.1|2970098_2970416_-	DUF883 domain-containing protein	NA	NA	NA	NA	NA
WP_003809431.1|2970500_2971217_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930160.1|2971480_2972902_+	uroporphyrinogen-III C-methyltransferase	NA	NA	NA	NA	NA
WP_019248433.1|2972968_2975716_-	pertactin autotransporter	NA	NA	NA	NA	NA
WP_010929632.1|2976048_2977065_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010930157.1|2977400_2978042_-	uracil phosphoribosyltransferase	NA	NA	NA	NA	NA
WP_003809423.1|2978132_2979569_-	D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase	NA	NA	NA	NA	NA
WP_023853534.1|2979726_2980800_+|tRNA	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	tRNA	NA	NA	NA	NA
WP_010930155.1|2980796_2981933_+|tRNA	tRNA guanosine(34) transglycosylase Tgt	tRNA	A0A1B1IVQ4	uncultured_Mediterranean_phage	44.4	1.9e-85
WP_003809416.1|2982077_2982422_+	preprotein translocase subunit YajC	NA	A0A1B1IVR5	uncultured_Mediterranean_phage	40.4	1.0e-10
WP_010930154.1|2982488_2984369_+	protein translocase subunit SecD	NA	NA	NA	NA	NA
WP_003809411.1|2984418_2985354_+	protein translocase subunit SecF	NA	A0A1B1IVP7	uncultured_Mediterranean_phage	35.5	3.0e-41
WP_010931363.1|2985686_2986703_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_015041211.1|2987640_2989068_+|tRNA	tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB	tRNA	NA	NA	NA	NA
WP_010930151.1|2989064_2990087_+	PhoH family protein	NA	A0A0S0MVD6	Pseudomonas_phage	45.4	8.7e-50
WP_003809396.1|2990076_2990550_+	rRNA maturation RNase YbeY	NA	NA	NA	NA	NA
WP_010930149.1|2990690_2991578_+	CBS domain-containing protein	NA	NA	NA	NA	NA
WP_014486064.1|2991574_2993218_+	apolipoprotein N-acyltransferase	NA	NA	NA	NA	NA
WP_010930148.1|2993214_2994264_-	aldo/keto reductase	NA	NA	NA	NA	NA
WP_010931363.1|2995052_2996069_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003817162.1|2996168_2996801_-	protein phosphatase CheZ	NA	NA	NA	NA	NA
WP_003811911.1|2996809_2997199_-	chemotaxis response regulator CheY	NA	Q56AR1	Bacillus_thuringiensis_phage	33.3	5.7e-10
WP_010930146.1|2997251_2998304_-	chemotaxis response regulator protein-glutamate methylesterase	NA	NA	NA	NA	NA
WP_010930145.1|2999167_3000874_-	Tar ligand binding domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	41.7	1.4e-12
WP_003811919.1|3000947_3001448_-	chemotaxis protein CheW	NA	NA	NA	NA	NA
WP_010930144.1|3001462_3003520_-	chemotaxis protein CheA	NA	NA	NA	NA	NA
WP_019247393.1|3003546_3003840_-	response regulator	NA	NA	NA	NA	NA
WP_003817154.1|3003941_3004889_-	flagellar motor protein MotB	NA	NA	NA	NA	NA
WP_003811927.1|3004901_3005777_-	flagellar motor stator protein MotA	NA	NA	NA	NA	NA
WP_003811929.1|3005897_3006458_-	flagellar transcriptional regulator FlhC	NA	NA	NA	NA	NA
WP_010930143.1|3006492_3006816_-	flagellar transcriptional regulator FlhD	NA	NA	NA	NA	NA
WP_003811933.1|3007251_3007989_+	RNA polymerase sigma factor FliA	NA	NA	NA	NA	NA
WP_005012067.1|3008287_3009238_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 25
NZ_CP010842	Bordetella pertussis strain H489 chromosome, complete genome	4106364	3030189	3102683	4106364	transposase	Bacillus_virus(16.67%)	58	NA	NA
WP_010929584.1|3030189_3031140_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003817151.1|3031182_3032358_+	FliC/FljB family flagellin	NA	NA	NA	NA	NA
WP_010930129.1|3032579_3034370_-	dihydrolipoyl dehydrogenase	NA	A0A2K5B2C5	Erysipelothrix_phage	25.2	2.4e-39
WP_010930128.1|3034382_3036044_-	dihydrolipoyllysine-residue acetyltransferase	NA	NA	NA	NA	NA
WP_010930127.1|3036056_3038762_-	pyruvate dehydrogenase (acetyl-transferring), homodimeric type	NA	NA	NA	NA	NA
WP_003817147.1|3039054_3040809_+	PAS domain S-box protein	NA	NA	NA	NA	NA
WP_010930126.1|3040805_3041432_+	response regulator transcription factor	NA	NA	NA	NA	NA
WP_003811948.1|3041428_3042280_+	bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD	NA	A0A249XZQ2	Enterococcus_phage	39.8	2.1e-33
WP_019248379.1|3042355_3044470_+	M3 family metallopeptidase	NA	NA	NA	NA	NA
WP_010930124.1|3044656_3045271_+	SCO family protein	NA	NA	NA	NA	NA
WP_010930123.1|3045416_3045668_+	GlsB/YeaQ/YmgE family stress response membrane protein	NA	NA	NA	NA	NA
WP_014486063.1|3045737_3047120_-	efflux transporter outer membrane subunit	NA	NA	NA	NA	NA
WP_010930121.1|3047116_3050296_-	efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_029443805.1|3051103_3052021_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930119.1|3052072_3052804_-	rRNA pseudouridine synthase	NA	NA	NA	NA	NA
WP_010926548.1|3052863_3053436_+	chorismate lyase	NA	NA	NA	NA	NA
WP_010929632.1|3054944_3055961_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010930118.1|3056098_3057148_-	NADP(H)-dependent aldo-keto reductase	NA	NA	NA	NA	NA
WP_005012067.1|3057252_3058203_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003813314.1|3058298_3059024_-	CoA pyrophosphatase	NA	NA	NA	NA	NA
WP_003813315.1|3059234_3059615_-	50S ribosomal protein L19	NA	NA	NA	NA	NA
WP_014905652.1|3059920_3060793_+	EamA family transporter	NA	NA	NA	NA	NA
WP_023852686.1|3060800_3061181_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023852693.1|3061334_3062609_-	PA0069 family radical SAM protein	NA	NA	NA	NA	NA
WP_010930113.1|3064096_3065005_-	sulfate adenylyltransferase subunit CysD	NA	NA	NA	NA	NA
WP_010930112.1|3065802_3066867_-	sulfate ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	30.3	3.8e-24
WP_170954292.1|3068703_3069705_-	sulfate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003813333.1|3069927_3070569_-	peroxiredoxin	NA	NA	NA	NA	NA
WP_003821527.1|3070651_3072478_-	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_010930111.1|3072721_3073651_-	electron transfer flavoprotein subunit alpha	NA	NA	NA	NA	NA
WP_010930110.1|3073650_3074400_-	electron transfer flavoprotein subunit beta/FixA family protein	NA	NA	NA	NA	NA
WP_003821521.1|3074471_3075386_-	histone deacetylase family protein	NA	A0A2K9KZC4	Tupanvirus	34.7	9.8e-45
WP_010930108.1|3075405_3076551_+	lytic murein transglycosylase B	NA	NA	NA	NA	NA
WP_014486062.1|3076611_3077523_-	cysteine synthase CysM	NA	A0A1X9I5K7	Streptococcus_phage	38.8	8.0e-47
WP_005012067.1|3077603_3078554_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_033446303.1|3078652_3079237_-	helix-hairpin-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003821513.1|3079271_3080261_-	ADP-glyceromanno-heptose 6-epimerase	NA	E3SJ87	Synechococcus_phage	34.4	2.2e-26
WP_010930105.1|3080257_3081199_-	D-glycero-beta-D-manno-heptose-7-phosphate kinase	NA	A0A2H4N7X4	Lake_Baikal_phage	28.1	1.5e-16
WP_010930104.1|3081195_3082416_-	lipopolysaccharide assembly protein LapB	NA	NA	NA	NA	NA
WP_010930103.1|3082458_3082773_-	DUF1049 domain-containing protein	NA	NA	NA	NA	NA
WP_010930102.1|3082964_3083324_-	integration host factor subunit beta	NA	NA	NA	NA	NA
WP_010930101.1|3083325_3085041_-	30S ribosomal protein S1	NA	NA	NA	NA	NA
WP_010930100.1|3085228_3085900_-	(d)CMP kinase	NA	NA	NA	NA	NA
WP_010930099.1|3085914_3087243_-	3-phosphoshikimate 1-carboxyvinyltransferase	NA	NA	NA	NA	NA
WP_010930098.1|3087239_3088139_-	prephenate dehydrogenase/arogenate dehydrogenase family protein	NA	NA	NA	NA	NA
WP_010930097.1|3088225_3089311_-	prephenate dehydratase	NA	NA	NA	NA	NA
WP_010930096.1|3089303_3090437_-	3-phosphoserine/phosphohydroxythreonine transaminase	NA	M1Q1P2	Streptococcus_phage	44.0	6.4e-78
WP_010930095.1|3090436_3093118_-	DNA gyrase subunit A	NA	G3M9Z5	Bacillus_virus	33.5	3.2e-104
WP_010930094.1|3093488_3094070_+	OmpA family protein	NA	NA	NA	NA	NA
WP_010930093.1|3094195_3094921_+	bifunctional 3-demethylubiquinone 3-O-methyltransferase/2-octaprenyl-6-hydroxy phenol methylase	NA	NA	NA	NA	NA
WP_010930092.1|3094917_3095595_+	HAD-IA family hydrolase	NA	NA	NA	NA	NA
WP_010930091.1|3095810_3096992_+	MFS transporter	NA	NA	NA	NA	NA
WP_010930090.1|3097764_3097947_+	type II toxin-antitoxin system HicA family toxin	NA	A0A1L2JY37	Aeribacillus_phage	56.1	3.7e-12
WP_005012808.1|3097976_3098927_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_004566317.1|3099056_3099449_+	type II toxin-antitoxin system HicB family antitoxin	NA	A0A0R6PJ17	Moraxella_phage	45.0	4.8e-25
WP_003821497.1|3099725_3100637_-	LysR family transcriptional regulator	NA	Q6JIH3	Burkholderia_virus	27.6	4.4e-05
WP_010930088.1|3100761_3101736_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_005012067.1|3101732_3102683_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 26
NZ_CP010842	Bordetella pertussis strain H489 chromosome, complete genome	4106364	3116190	3169708	4106364	transposase,holin	Bacillus_phage(33.33%)	44	NA	NA
WP_010930066.1|3116190_3117141_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003810839.1|3117253_3117505_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003810835.1|3118010_3119129_-	mannose-6-phosphate isomerase	NA	NA	NA	NA	NA
WP_003810832.1|3119248_3119461_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930064.1|3119620_3119842_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929591.1|3119894_3120845_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930062.1|3122021_3123392_-	acetyl-CoA carboxylase biotin carboxylase subunit	NA	NA	NA	NA	NA
WP_010930061.1|3123424_3124216_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930060.1|3124228_3125284_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_019247557.1|3125309_3126185_-	amidohydrolase	NA	NA	NA	NA	NA
WP_023852826.1|3126290_3126539_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003819989.1|3126573_3128028_-	carboxylase	NA	NA	NA	NA	NA
WP_004568140.1|3128024_3128546_-	acetyl-CoA carboxylase biotin carboxyl carrier protein	NA	NA	NA	NA	NA
WP_010930057.1|3128574_3129927_-	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_029444137.1|3130150_3133039_-	HD domain-containing protein	NA	NA	NA	NA	NA
WP_010930056.1|3135183_3136485_+	phospholipase A	NA	NA	NA	NA	NA
WP_010930055.1|3136499_3137216_-	flagellar brake protein	NA	NA	NA	NA	NA
WP_010930054.1|3137497_3138178_+	DUF3313 domain-containing protein	NA	NA	NA	NA	NA
WP_003809770.1|3138189_3138357_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023852837.1|3138465_3138612_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930052.1|3138705_3139365_-	thiopurine S-methyltransferase	NA	NA	NA	NA	NA
WP_010930051.1|3139763_3141596_+	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	26.4	1.3e-27
WP_005012067.1|3141592_3142543_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814007.1|3143706_3145422_+	acetolactate synthase 3 catalytic subunit	NA	A0A0P0CDR3	Ostreococcus_lucimarinus_virus	30.3	3.1e-60
WP_003814006.1|3145432_3145924_+	acetolactate synthase small subunit	NA	NA	NA	NA	NA
WP_010930015.1|3145996_3147013_+	ketol-acid reductoisomerase	NA	NA	NA	NA	NA
WP_003814004.1|3147180_3147960_+	CDP-diacylglycerol--serine O-phosphatidyltransferase	NA	NA	NA	NA	NA
WP_003814003.1|3147978_3148506_-	lipoprotein	NA	NA	NA	NA	NA
WP_003814002.1|3148799_3149069_+	30S ribosomal protein S15	NA	NA	NA	NA	NA
WP_003821234.1|3149159_3151319_+	polyribonucleotide nucleotidyltransferase	NA	NA	NA	NA	NA
WP_003814000.1|3151439_3152159_+	lipoprotein	NA	NA	NA	NA	NA
WP_005013747.1|3152155_3153106_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003813999.1|3153246_3154464_+	threonine ammonia-lyase	NA	NA	NA	NA	NA
WP_010930016.1|3154457_3155069_-	PIN domain-containing protein	NA	K4HZX4	Acidithiobacillus_phage	32.5	3.3e-12
WP_003813997.1|3155702_3156680_+	NAD(P)H-quinone oxidoreductase	NA	NA	NA	NA	NA
WP_003813996.1|3156823_3157570_+	triose-phosphate isomerase	NA	NA	NA	NA	NA
WP_010930017.1|3157591_3158038_+	preprotein translocase subunit SecG	NA	NA	NA	NA	NA
WP_010930018.1|3158825_3161057_+|holin	choline BCCT transporter BetT	holin	NA	NA	NA	NA
WP_003813993.1|3161079_3161880_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003813992.1|3162161_3163394_+	methylaspartate ammonia-lyase	NA	NA	NA	NA	NA
WP_003813991.1|3163504_3164494_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930019.1|3164524_3165913_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_003813988.1|3167511_3168495_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_023994644.1|3168691_3169708_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
>prophage 27
NZ_CP010842	Bordetella pertussis strain H489 chromosome, complete genome	4106364	3234166	3307328	4106364	transposase	Klosneuvirus(16.67%)	57	NA	NA
WP_010930048.1|3234166_3235117_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003813068.1|3235113_3236133_-	class 1 fructose-bisphosphatase	NA	A0A1V0SKX4	Klosneuvirus	35.7	1.5e-49
WP_010930049.1|3236142_3238851_-	aminopeptidase N	NA	A0A0P0IY26	Acinetobacter_phage	24.0	2.8e-15
WP_010930050.1|3238998_3239655_+	DUF4136 domain-containing protein	NA	NA	NA	NA	NA
WP_005013747.1|3239753_3240704_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023998705.1|3240851_3241745_+	mechanosensitive ion channel family protein	NA	NA	NA	NA	NA
WP_010930013.1|3241944_3243639_+	thiamine pyrophosphate-binding protein	NA	NA	NA	NA	NA
WP_010930012.1|3243673_3244600_+	VOC family protein	NA	NA	NA	NA	NA
WP_010930011.1|3244668_3245766_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003818996.1|3245784_3246648_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	38.9	9.6e-34
WP_010930010.1|3246659_3247442_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_004566042.1|3247438_3248557_+	DUF2817 domain-containing protein	NA	NA	NA	NA	NA
WP_010930009.1|3248553_3250086_+	acyl--CoA ligase	NA	NA	NA	NA	NA
WP_003818991.1|3250126_3251134_+	zinc-binding dehydrogenase	NA	NA	NA	NA	NA
WP_023999677.1|3251278_3252001_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930007.1|3252016_3253039_-	autotransporter outer membrane beta-barrel domain-containing protein	NA	NA	NA	NA	NA
WP_010930006.1|3253355_3254090_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930005.1|3254174_3255920_+	acetolactate synthase	NA	NA	NA	NA	NA
WP_010930004.1|3255916_3256669_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930003.1|3256713_3257670_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003818983.1|3257758_3258325_+	membrane protein	NA	NA	NA	NA	NA
WP_023997539.1|3258332_3259193_-	D-amino acid aminotransferase	NA	NA	NA	NA	NA
WP_020699739.1|3259222_3259951_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	42.4	3.4e-32
WP_003807497.1|3259982_3260666_-	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_010930000.1|3261503_3262418_-	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929999.1|3262482_3263391_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929998.1|3263481_3264906_-	TolC family protein	NA	NA	NA	NA	NA
WP_010929997.1|3264907_3266230_-	cyclolysin T1SS periplasmic adaptor subunit CyaD	NA	NA	NA	NA	NA
WP_010929996.1|3266226_3268365_-	cyclolysin T1SS permease/ATPase CyaB	NA	W8CYL7	Bacillus_phage	29.2	2.7e-45
WP_010929995.1|3268442_3273563_-	bifunctional adenylate cyclase toxin/hemolysin CyaA	NA	NA	NA	NA	NA
WP_153302771.1|3273663_3273972_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929994.1|3274041_3274599_+	cyclolysin-activating lysine-acyltransferase	NA	NA	NA	NA	NA
WP_010929993.1|3274614_3276096_-	NAD-dependent succinate-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
WP_010929992.1|3278266_3279604_-	FAD-binding oxidoreductase	NA	NA	NA	NA	NA
WP_010929991.1|3279638_3281636_-	hydantoinase B/oxoprolinase family protein	NA	NA	NA	NA	NA
WP_010929990.1|3281653_3283702_-	hydantoinase/oxoprolinase family protein	NA	NA	NA	NA	NA
WP_010929989.1|3283832_3284699_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929988.1|3284967_3285933_-	octaprenyl diphosphate synthase	NA	NA	NA	NA	NA
WP_010929987.1|3286047_3287196_-	fumarylacetoacetate hydrolase family protein	NA	NA	NA	NA	NA
WP_003807462.1|3287620_3287932_+	50S ribosomal protein L21	NA	NA	NA	NA	NA
WP_003807460.1|3287965_3288226_+	50S ribosomal protein L27	NA	NA	NA	NA	NA
WP_003807459.1|3288375_3289509_+	GTPase ObgE	NA	NA	NA	NA	NA
WP_003807457.1|3289579_3290716_+	glutamate 5-kinase	NA	A0A1X9I5D0	Streptococcus_phage	44.8	5.8e-63
WP_010925762.1|3290881_3291676_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_003807452.1|3291738_3292182_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_005012808.1|3292297_3293248_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929985.1|3293349_3293778_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010929984.1|3293850_3296046_+	DUF1156 domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|3296267_3297218_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023852739.1|3297177_3297702_-	sigma-70 family RNA polymerase sigma factor	NA	NA	NA	NA	NA
WP_003814467.1|3297833_3298805_+	FecR family protein	NA	NA	NA	NA	NA
WP_010929983.1|3298924_3301369_+	TonB-dependent siderophore receptor	NA	NA	NA	NA	NA
WP_010929982.1|3301384_3301975_-	polyisoprenoid-binding protein	NA	NA	NA	NA	NA
WP_005012067.1|3302218_3303169_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814462.1|3303326_3304592_-	saccharopine dehydrogenase family protein	NA	NA	NA	NA	NA
WP_003814461.1|3304625_3305723_-	carboxynorspermidine decarboxylase	NA	NA	NA	NA	NA
WP_005013747.1|3306377_3307328_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 28
NZ_CP010842	Bordetella pertussis strain H489 chromosome, complete genome	4106364	3318615	3418728	4106364	transposase,tRNA,terminase,tail,protease	uncultured_Caudovirales_phage(14.29%)	108	NA	NA
WP_005012067.1|3318615_3319566_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814437.1|3320297_3320675_+	4a-hydroxytetrahydrobiopterin dehydratase	NA	NA	NA	NA	NA
WP_003814436.1|3320659_3321361_-	membrane protein	NA	NA	NA	NA	NA
WP_010931409.1|3321504_3322197_-	nucleotidyltransferase family protein	NA	NA	NA	NA	NA
WP_010931410.1|3322196_3323300_-	phosphotransferase	NA	NA	NA	NA	NA
WP_010931411.1|3323409_3325782_+	LPS-assembly protein LptD	NA	NA	NA	NA	NA
WP_010931412.1|3325778_3327338_+	chaperone SurA	NA	NA	NA	NA	NA
WP_010931413.1|3327362_3328160_+	16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA	NA	NA	NA	NA	NA
WP_010931414.1|3328191_3329337_-	glycerate kinase	NA	W6LM47	Streptococcus_phage	42.2	1.7e-41
WP_003814419.1|3329441_3330884_+	pyruvate kinase	NA	NA	NA	NA	NA
WP_010929184.1|3330886_3332116_-	spore maturation protein	NA	NA	NA	NA	NA
WP_010929584.1|3334253_3335204_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247922.1|3336333_3336891_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019247923.1|3336866_3337217_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003814657.1|3337385_3338180_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.6	2.4e-15
WP_010931416.1|3338176_3339226_-	iron ABC transporter permease	NA	NA	NA	NA	NA
WP_003814652.1|3339225_3339915_-	tol-pal system protein YbgF	NA	NA	NA	NA	NA
WP_003814650.1|3340001_3340499_-	peptidoglycan-associated lipoprotein Pal	NA	NA	NA	NA	NA
WP_010931417.1|3340530_3341847_-	Tol-Pal system protein TolB	NA	NA	NA	NA	NA
WP_010931418.1|3341863_3342838_-	cell envelope integrity protein TolA	NA	NA	NA	NA	NA
WP_003814643.1|3342874_3343333_-	protein TolR	NA	NA	NA	NA	NA
WP_003814641.1|3343332_3344013_-	protein TolQ	NA	NA	NA	NA	NA
WP_010931419.1|3344015_3344444_-	tol-pal system-associated acyl-CoA thioesterase	NA	NA	NA	NA	NA
WP_003814636.1|3344496_3346227_-|tRNA	proline--tRNA ligase	tRNA	A0A2K9L3R9	Tupanvirus	29.4	4.6e-11
WP_003814635.1|3346292_3346865_+	RNA pyrophosphohydrolase	NA	NA	NA	NA	NA
WP_010931420.1|3346845_3347532_+	response regulator	NA	NA	NA	NA	NA
WP_010931421.1|3347887_3348559_+	SOS response-associated peptidase	NA	Q5QF62	Pseudomonas_virus	39.9	4.7e-36
WP_010931422.1|3348887_3349109_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010926433.1|3349108_3349390_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931423.1|3349386_3349902_-	DUF2514 family protein	NA	NA	NA	NA	NA
WP_010931424.1|3349901_3350453_-	lysozyme	NA	NA	NA	NA	NA
WP_010931425.1|3350431_3350674_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931426.1|3350678_3351491_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010926428.1|3351490_3351754_-	hypothetical protein	NA	NA	NA	NA	NA
WP_124740660.1|3351794_3351992_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931428.1|3351972_3352389_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931429.1|3352393_3356350_-	DUF1983 domain-containing protein	NA	A0A0B5A1N2	Achromobacter_phage	40.8	3.9e-215
WP_010931430.1|3356342_3356732_-	C40 family peptidase	NA	A0A0G3EYJ9	Achromobacter_phage	50.0	3.0e-35
WP_010931431.1|3356728_3357262_-	DUF1833 family protein	NA	A5A3Q9	Burkholderia_phage	46.9	1.1e-40
WP_010931432.1|3357329_3357689_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931433.1|3357698_3360311_-|tail	phage tail tape measure protein	tail	A0A2H4J107	uncultured_Caudovirales_phage	38.6	4.9e-105
WP_010931434.1|3360336_3360627_-	DUF1799 domain-containing protein	NA	A0A2H4JBP7	uncultured_Caudovirales_phage	45.2	3.7e-14
WP_003813412.1|3360644_3360974_-|tail	phage tail assembly chaperone	tail	A0A2H4J121	uncultured_Caudovirales_phage	44.0	2.9e-15
WP_010931435.1|3360983_3361502_-|tail	phage tail protein	tail	A0A1S5R1H0	Pseudomonas_phage	38.3	5.4e-24
WP_010931436.1|3361756_3362257_-	HNH endonuclease	NA	A0A1I9SEX5	Klebsiella_phage	45.1	4.4e-31
WP_010931437.1|3362264_3362687_-	DUF4128 domain-containing protein	NA	NA	NA	NA	NA
WP_010931438.1|3362683_3363082_-	hypothetical protein	NA	I6PCW1	Cronobacter_phage	38.0	4.2e-16
WP_010931439.1|3363078_3363474_-	hypothetical protein	NA	A0A2D2W284	Stenotrophomonas_phage	35.0	7.8e-07
WP_010931440.1|3363473_3363674_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247789.1|3363675_3364158_-	hypothetical protein	NA	A0A2H4JE38	uncultured_Caudovirales_phage	37.1	1.8e-13
WP_010931442.1|3364220_3364472_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012808.1|3365146_3366097_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931443.1|3366525_3367128_-	hypothetical protein	NA	R9TF81	Synechococcus_phage	43.6	7.9e-27
WP_010931444.1|3367250_3367493_-	hypothetical protein	NA	A0A0H5AUE5	Pseudomonas_phage	53.2	5.6e-16
WP_010931445.1|3367498_3368554_-	hypothetical protein	NA	A0A0H5BBX3	Pseudomonas_phage	50.6	2.6e-97
WP_010931446.1|3368582_3370001_-	DUF4055 domain-containing protein	NA	R9TF43	Synechococcus_phage	42.1	2.2e-99
WP_010931447.1|3370003_3371281_-|terminase	terminase large subunit	terminase	A0A1B1P9C9	Acinetobacter_phage	64.7	2.4e-150
WP_019247942.1|3371267_3371753_-|transposase	transposase	transposase	C7U0W1	Enterobacteria_phage	61.5	7.3e-39
WP_005012067.1|3372392_3373343_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023853183.1|3373360_3373582_+	hypothetical protein	NA	NA	NA	NA	NA
WP_161633094.1|3373599_3374289_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023853179.1|3374281_3374533_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010931451.1|3375087_3375699_+	S24 family peptidase	NA	NA	NA	NA	NA
WP_019247378.1|3375770_3375977_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|3376228_3377179_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019248926.1|3377277_3378351_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931475.1|3378518_3379313_+	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010925795.1|3379352_3379877_-	DUF934 domain-containing protein	NA	NA	NA	NA	NA
WP_010931474.1|3379869_3381612_-	nitrite/sulfite reductase	NA	NA	NA	NA	NA
WP_010931473.1|3381821_3382580_-	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	24.4	4.4e-14
WP_010931472.1|3382582_3383290_-	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	25.4	8.2e-07
WP_010931471.1|3383306_3384188_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_019247734.1|3384198_3384957_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_019248554.1|3384925_3385681_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931468.1|3385750_3387169_+	amidase	NA	NA	NA	NA	NA
WP_003819076.1|3387190_3387841_-	carbonic anhydrase	NA	NA	NA	NA	NA
WP_033446132.1|3387974_3388310_-	ASCH domain-containing protein	NA	NA	NA	NA	NA
WP_010930800.1|3388398_3389349_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931467.1|3389425_3391246_+	DNA helicase RecQ	NA	L7RCS0	Acanthamoeba_polyphaga_moumouvirus	35.3	3.1e-74
WP_010931466.1|3391250_3392324_-	Holliday junction branch migration DNA helicase RuvB	NA	A0A127AWE7	Bacillus_phage	25.7	2.3e-08
WP_003814230.1|3392446_3393415_+	threo-3-hydroxy-L-aspartate ammonia-lyase	NA	NA	NA	NA	NA
WP_010927008.1|3393488_3394400_+	complex I NDUFA9 subunit family protein	NA	NA	NA	NA	NA
WP_003814226.1|3394418_3394991_-	Holliday junction branch migration protein RuvA	NA	NA	NA	NA	NA
WP_010931465.1|3395071_3395620_-	crossover junction endodeoxyribonuclease RuvC	NA	NA	NA	NA	NA
WP_010931464.1|3395619_3397209_-	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase	NA	Q58MG4	Prochlorococcus_phage	47.2	8.7e-65
WP_003814221.1|3397278_3397518_-	DNA-binding protein	NA	NA	NA	NA	NA
WP_023995141.1|3397558_3398584_-|tRNA	tRNA dihydrouridine synthase DusB	tRNA	NA	NA	NA	NA
WP_003814217.1|3398649_3399831_-	UbiH/UbiF/VisC/COQ6 family ubiquinone biosynthesis hydroxylase	NA	NA	NA	NA	NA
WP_010931463.1|3399927_3400380_+	membrane protein	NA	NA	NA	NA	NA
WP_010931462.1|3400389_3401730_-	aminopeptidase P N-terminal domain-containing protein	NA	NA	NA	NA	NA
WP_010931461.1|3402046_3403084_+	sodium:calcium antiporter	NA	NA	NA	NA	NA
WP_003814209.1|3403465_3403825_+	hypothetical protein	NA	NA	NA	NA	NA
WP_041166340.1|3403908_3404850_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_076879617.1|3404924_3405875_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814206.1|3406168_3407263_+	porin	NA	NA	NA	NA	NA
WP_003814205.1|3407344_3408226_+	cytochrome c oxidase assembly protein	NA	NA	NA	NA	NA
WP_003814203.1|3408247_3409087_-	UTP--glucose-1-phosphate uridylyltransferase GalU	NA	A0A127AW70	Bacillus_phage	48.9	1.1e-66
WP_010931459.1|3409162_3410680_+|protease	M48 family metalloprotease	protease	NA	NA	NA	NA
WP_010931458.1|3410776_3411877_-	alpha/beta fold hydrolase	NA	NA	NA	NA	NA
WP_010931457.1|3411893_3412316_-	nuclear transport factor 2 family protein	NA	NA	NA	NA	NA
WP_003814195.1|3412338_3412551_-	zinc-finger domain-containing protein	NA	NA	NA	NA	NA
WP_010931456.1|3412597_3413518_-	branched-chain amino acid transaminase	NA	NA	NA	NA	NA
WP_010931455.1|3413700_3414450_+	AzlC family ABC transporter permease	NA	NA	NA	NA	NA
WP_003814188.1|3414452_3414782_+	AzlD domain-containing protein	NA	NA	NA	NA	NA
WP_010931454.1|3414988_3416422_+	DEAD/DEAH box helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	34.4	1.5e-52
WP_003814185.1|3416433_3416817_-	thioredoxin family protein	NA	NA	NA	NA	NA
WP_010931453.1|3416878_3417679_+	EI24 domain-containing protein	NA	NA	NA	NA	NA
WP_005015810.1|3417777_3418728_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 29
NZ_CP010842	Bordetella pertussis strain H489 chromosome, complete genome	4106364	3706393	3839319	4106364	transposase,integrase,tRNA	uncultured_Mediterranean_phage(10.34%)	115	3751036:3751053	3795676:3795693
WP_005013747.1|3706393_3707344_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929878.1|3707340_3707976_-	LysE family transporter	NA	NA	NA	NA	NA
WP_003818466.1|3708105_3709005_+	LysR family transcriptional regulator ArgP	NA	NA	NA	NA	NA
WP_003807278.1|3709100_3709592_+	copper chaperone PCu(A)C	NA	NA	NA	NA	NA
WP_010929877.1|3709638_3710604_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929876.1|3711737_3712979_+	PLP-dependent aminotransferase family protein	NA	A0A1X9I5H2	Streptococcus_phage	24.9	1.9e-14
WP_003807287.1|3713092_3714109_+	amino acid ABC transporter substrate-binding protein	NA	A0A1B1IT51	uncultured_Mediterranean_phage	43.8	3.5e-75
WP_010929875.1|3714143_3714620_-	membrane protein	NA	NA	NA	NA	NA
WP_003807291.1|3714762_3715671_-	hydroxymethylglutaryl-CoA lyase	NA	NA	NA	NA	NA
WP_010929874.1|3715784_3716897_-	DNA-protecting protein DprA	NA	S6BFL3	Thermus_phage	35.0	1.9e-21
WP_023853429.1|3716997_3717483_-	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_003818477.1|3717619_3718870_+	kynureninase	NA	NA	NA	NA	NA
WP_003807300.1|3718971_3719484_+	peptide deformylase	NA	E3SLL2	Synechococcus_phage	43.3	8.5e-22
WP_005013747.1|3719582_3720533_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929873.1|3720598_3721537_+|tRNA	methionyl-tRNA formyltransferase	tRNA	E3SNR5	Prochlorococcus_phage	35.7	1.4e-09
WP_010929872.1|3721559_3722186_-	pyridoxamine 5'-phosphate oxidase family protein	NA	NA	NA	NA	NA
WP_003818481.1|3722182_3722839_-	HAD hydrolase-like protein	NA	NA	NA	NA	NA
WP_010929871.1|3722835_3723438_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929870.1|3723444_3724032_-	TIGR00730 family Rossman fold protein	NA	A0A2I2L3F0	Orpheovirus	23.3	1.1e-07
WP_010929869.1|3724212_3724782_+	bacterioferritin	NA	NA	NA	NA	NA
WP_003807313.1|3724852_3726172_-	30S ribosomal protein S12 methylthiotransferase RimO	NA	NA	NA	NA	NA
WP_003807315.1|3726278_3726470_-	4-oxalocrotonate tautomerase	NA	NA	NA	NA	NA
WP_010929868.1|3726721_3728011_+	FAD-binding oxidoreductase	NA	NA	NA	NA	NA
WP_010929867.1|3728165_3729161_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003807322.1|3729245_3729920_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005013747.1|3729916_3730867_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003816336.1|3731028_3732270_+	ornithine--oxo-acid transaminase	NA	A0A1V0SKB7	Klosneuvirus	25.2	4.0e-25
WP_010929866.1|3732266_3733211_+	arginase	NA	A0A0N9R043	Chrysochromulina_ericina_virus	33.3	9.5e-27
WP_005012067.1|3733329_3734280_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023853484.1|3734239_3735169_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003807759.1|3735222_3735558_-	carboxymuconolactone decarboxylase family protein	NA	NA	NA	NA	NA
WP_010929865.1|3735602_3736367_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010929864.1|3736390_3737131_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929863.1|3737138_3738692_-	acyl--CoA ligase	NA	A0A2K9L3I8	Tupanvirus	22.6	1.5e-13
WP_010929862.1|3738726_3739704_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_023853476.1|3739976_3740558_-	ureidoglycolate lyase	NA	NA	NA	NA	NA
WP_094145972.1|3740609_3747512_-	autotransporter BatB	NA	NA	NA	NA	NA
WP_003807750.1|3747958_3748090_-	entericidin A/B family lipoprotein	NA	NA	NA	NA	NA
WP_010929858.1|3748355_3748562_-	DUF3596 domain-containing protein	NA	NA	NA	NA	NA
WP_010929857.1|3749566_3750226_+	HAD-IA family hydrolase	NA	NA	NA	NA	NA
WP_010929856.1|3750253_3751399_+	DSD1 family PLP-dependent enzyme	NA	NA	NA	NA	NA
3751036:3751053	attL	CAGCGTGCTGGCCACCGT	NA	NA	NA	NA
WP_003807743.1|3751539_3751875_+	YegP family protein	NA	NA	NA	NA	NA
WP_010929855.1|3751949_3752810_-	hypothetical protein	NA	A0A2C9D0H9	Yersinia_phage	53.6	1.7e-51
WP_010929854.1|3753073_3753775_-	glutathione S-transferase	NA	NA	NA	NA	NA
WP_019248860.1|3753944_3754340_+	RidA family protein	NA	NA	NA	NA	NA
WP_005012067.1|3754449_3755400_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929852.1|3755410_3756052_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010926414.1|3756218_3756461_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929851.1|3756559_3757510_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929850.1|3757545_3758013_+	hypothetical protein	NA	Q3HQX1	Burkholderia_phage	71.3	2.1e-43
WP_010926411.1|3758246_3758624_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010926410.1|3758620_3758803_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929849.1|3758806_3759793_+	recombinase RecT	NA	H9C0R8	Aeromonas_phage	57.3	2.0e-67
WP_010929848.1|3759789_3760437_+	YqaJ viral recombinase family protein	NA	A0A0U2BXF3	Paracoccus_phage	41.4	2.0e-31
WP_010929847.1|3760494_3761022_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247983.1|3761058_3762243_+	hypothetical protein	NA	A0A291L9X3	Bordetella_phage	37.8	1.5e-24
WP_010929845.1|3762253_3762595_+	hypothetical protein	NA	A0A0H5ARN8	Pseudomonas_phage	45.3	1.0e-10
WP_010926403.1|3762707_3762908_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010929843.1|3762904_3763894_-|integrase	site-specific integrase	integrase	A0A1B1P9F9	Acinetobacter_phage	44.4	4.4e-75
WP_010929841.1|3765380_3767351_-	type III secretion system effector BopC	NA	NA	NA	NA	NA
WP_003814626.1|3767592_3767991_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929840.1|3767999_3768923_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|3769380_3770331_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010927254.1|3770561_3772253_-	membrane protein insertase YidC	NA	NA	NA	NA	NA
WP_003816027.1|3772301_3772574_-	membrane protein insertion efficiency factor YidD	NA	A0A2H4PQM5	Staphylococcus_phage	52.2	7.0e-15
WP_003816026.1|3772570_3772942_-	ribonuclease P protein component	NA	NA	NA	NA	NA
WP_003816025.1|3773037_3773172_-	50S ribosomal protein L34	NA	NA	NA	NA	NA
WP_010929554.1|3773577_3774987_+	chromosomal replication initiator protein DnaA	NA	NA	NA	NA	NA
WP_010929839.1|3774989_3776099_+	DNA polymerase III subunit beta	NA	B4UTW9	Rhizobium_phage	32.6	1.2e-41
WP_010929838.1|3776193_3778647_+	DNA topoisomerase (ATP-hydrolyzing) subunit B	NA	G3M9Z3	Bacillus_virus	34.8	2.3e-112
WP_023853625.1|3778765_3779557_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010929836.1|3779676_3781104_+	amidase	NA	NA	NA	NA	NA
WP_010929835.1|3781142_3782114_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929834.1|3782532_3783696_+	alpha-hydroxy-acid oxidizing protein	NA	NA	NA	NA	NA
WP_010929833.1|3783783_3784629_+	AraC family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|3786185_3787136_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003818201.1|3787690_3788065_-	MerR family DNA-binding transcriptional regulator	NA	NA	NA	NA	NA
WP_010929807.1|3788139_3789198_+	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
WP_005012067.1|3789221_3790172_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929808.1|3793053_3794223_+	acetyl-CoA C-acyltransferase	NA	NA	NA	NA	NA
WP_003815953.1|3794323_3795931_+	methylcrotonoyl-CoA carboxylase	NA	A0A1B2ITV7	Pike_perch_iridovirus	57.3	5.4e-22
3795676:3795693	attR	CAGCGTGCTGGCCACCGT	NA	NA	NA	NA
WP_010929810.1|3795977_3797999_+	acetyl/propionyl/methylcrotonyl-CoA carboxylase subunit alpha	NA	NA	NA	NA	NA
WP_003815955.1|3798027_3798273_-	DUF1653 domain-containing protein	NA	NA	NA	NA	NA
WP_004565905.1|3798286_3799477_-	acetylornithine transaminase	NA	A0A1V0SKB7	Klosneuvirus	26.7	4.4e-21
WP_010929811.1|3799672_3800638_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929812.1|3800660_3801800_-	DSD1 family PLP-dependent enzyme	NA	NA	NA	NA	NA
WP_010929813.1|3802011_3802974_+	TAXI family TRAP transporter solute-binding subunit	NA	NA	NA	NA	NA
WP_010929814.1|3803097_3805122_+	TRAP transporter permease	NA	NA	NA	NA	NA
WP_010929815.1|3805318_3807562_+	TonB-dependent hemoglobin/transferrin/lactoferrin family receptor	NA	NA	NA	NA	NA
WP_003815964.1|3807840_3808299_+	DUF494 domain-containing protein	NA	NA	NA	NA	NA
WP_010929816.1|3809226_3811848_-	GDYXXLXY domain-containing protein	NA	NA	NA	NA	NA
WP_010929817.1|3811911_3814539_+	DNA topoisomerase III	NA	A0A0G2YA05	Acanthamoeba_polyphaga_mimivirus	25.4	6.1e-23
WP_010929818.1|3814690_3815755_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_020699616.1|3815754_3816525_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	33.9	8.1e-24
WP_010929819.1|3816533_3817367_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_003818225.1|3817379_3818159_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010929820.1|3818232_3819666_+	aldehyde dehydrogenase family protein	NA	NA	NA	NA	NA
WP_010929821.1|3819693_3820452_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010929822.1|3820507_3822358_-	biosynthetic-type acetolactate synthase large subunit	NA	E4WLQ6	Ostreococcus_tauri_virus	30.4	2.2e-59
WP_010929823.1|3822451_3822928_+	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_023853391.1|3822944_3823865_-	bestrophin	NA	NA	NA	NA	NA
WP_003818232.1|3823971_3824472_+	SET domain-containing protein-lysine N-methyltransferase	NA	NA	NA	NA	NA
WP_010929826.1|3824845_3825538_+	3,4-dihydroxy-2-butanone-4-phosphate synthase	NA	A0A2H4PQS2	Staphylococcus_phage	41.6	6.3e-36
WP_162268689.1|3825652_3825829_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929591.1|3825846_3826797_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931556.1|3826793_3830567_-	methionine synthase	NA	A0A140XBC7	Dickeya_phage	50.8	8.6e-10
WP_010931557.1|3830903_3832793_+	TonB-dependent receptor	NA	A0A0P0I887	Acinetobacter_phage	30.8	7.6e-07
WP_010931558.1|3832804_3833698_+	cobalamin-binding protein	NA	NA	NA	NA	NA
WP_010931559.1|3833801_3834599_+	thiazole synthase	NA	NA	NA	NA	NA
WP_010931560.1|3834595_3835447_+	bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase	NA	NA	NA	NA	NA
WP_003817656.1|3835508_3836189_+	protein-L-isoaspartate O-methyltransferase	NA	A0A1B1IU40	uncultured_Mediterranean_phage	34.8	3.5e-15
WP_019247189.1|3836216_3836552_+	TolC family protein	NA	NA	NA	NA	NA
WP_019247190.1|3836552_3837512_+	TolC family outer membrane protein	NA	NA	NA	NA	NA
WP_003815102.1|3837532_3838021_-	D-glycero-beta-D-manno-heptose 1-phosphate adenylyltransferase	NA	A0A1B1IUK5	uncultured_Mediterranean_phage	34.1	1.6e-17
WP_010931561.1|3838302_3839319_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
>prophage 30
NZ_CP010842	Bordetella pertussis strain H489 chromosome, complete genome	4106364	4028535	4081967	4106364	transposase	Planktothrix_phage(40.0%)	46	NA	NA
WP_014486111.1|4028535_4029486_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931662.1|4029655_4030882_+	bifunctional glutamate N-acetyltransferase/amino-acid acetyltransferase ArgJ	NA	NA	NA	NA	NA
WP_010931663.1|4031081_4031948_+	ATP-binding protein	NA	NA	NA	NA	NA
WP_003815027.1|4031940_4032903_+	Nudix family hydrolase	NA	A0A221LFJ1	Barns_Ness_breadcrumb_sponge_sobemo-like_virus	53.4	1.9e-06
WP_010927663.1|4033003_4033954_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|4034052_4035003_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929577.1|4035101_4036052_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994937.1|4036048_4037542_-	efflux transporter outer membrane subunit	NA	NA	NA	NA	NA
WP_003815032.1|4037538_4040646_-	multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_010931665.1|4040642_4043711_-	MdtB/MuxB family multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_010931666.1|4043707_4044958_-	MdtA/MuxA family multidrug efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
WP_003815038.1|4045138_4045900_-	cell division protein ZapD	NA	NA	NA	NA	NA
WP_019247320.1|4045932_4046583_-	dephospho-CoA kinase	NA	NA	NA	NA	NA
WP_003820519.1|4046585_4047425_-	prepilin peptidase	NA	NA	NA	NA	NA
WP_003815047.1|4047665_4048409_+	copper resistance protein NlpE N-terminal domain-containing protein	NA	NA	NA	NA	NA
WP_003815049.1|4048491_4048839_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003815051.1|4048936_4049779_-	pantoate--beta-alanine ligase	NA	NA	NA	NA	NA
WP_003815053.1|4049823_4050711_-	segregation/condensation protein A	NA	NA	NA	NA	NA
WP_003815055.1|4050737_4050926_-	DUF3460 family protein	NA	NA	NA	NA	NA
WP_010931669.1|4051023_4052481_+	DHA2 family efflux MFS transporter permease subunit	NA	NA	NA	NA	NA
WP_019249116.1|4052467_4053994_+	glycerol kinase GlpK	NA	NA	NA	NA	NA
WP_003815061.1|4054012_4054480_-	CopD family protein	NA	NA	NA	NA	NA
WP_010931671.1|4054479_4055502_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_169507388.1|4055622_4056342_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	39.9	4.7e-34
WP_003815066.1|4056417_4057518_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003815068.1|4057519_4058710_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003815070.1|4058829_4059846_-	amino acid ABC transporter substrate-binding protein	NA	A0A1B1IT51	uncultured_Mediterranean_phage	42.1	1.0e-71
WP_003815073.1|4060164_4060836_+	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	38.2	9.5e-29
WP_010927126.1|4060832_4061741_+	FtsX-like permease family protein	NA	NA	NA	NA	NA
WP_010931672.1|4061952_4062600_+	chemoreceptor glutamine deamidase CheD	NA	NA	NA	NA	NA
WP_010931673.1|4066451_4067528_+	A/G-specific adenine glycosylase	NA	NA	NA	NA	NA
WP_003815084.1|4067538_4068348_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003815086.1|4068437_4069211_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_023853189.1|4069211_4069376_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930363.1|4069393_4070344_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_077274100.1|4070232_4071255_+	CoA transferase	NA	NA	NA	NA	NA
WP_010931674.1|4071244_4072399_+	CoA transferase	NA	NA	NA	NA	NA
WP_010931675.1|4072438_4073851_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_019247370.1|4073975_4074842_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931677.1|4074843_4075668_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_023853488.1|4075664_4076426_+	nitroreductase	NA	M1I6Q5	Acanthocystis_turfacea_Chlorella_virus	31.0	2.0e-19
WP_003808010.1|4076506_4077193_-	TetR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931679.1|4077366_4078374_+	hydroxymethylglutaryl-CoA lyase	NA	NA	NA	NA	NA
WP_003819309.1|4078370_4079150_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010931680.1|4079207_4080470_+	CoA transferase	NA	NA	NA	NA	NA
WP_010929591.1|4081016_4081967_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
