The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP010844	Bordetella pertussis strain H559 chromosome, complete genome	4106490	27282	70036	4106490	tRNA,transposase	Synechococcus_phage(50.0%)	41	NA	NA
WP_010930363.1|27282_28233_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023995007.1|28314_28650_-	CoA transferase	NA	NA	NA	NA	NA
WP_010929578.1|28674_29109_-	OB-fold domain-containing protein	NA	NA	NA	NA	NA
WP_019247164.1|29141_30359_-	thiolase family protein	NA	NA	NA	NA	NA
WP_010929580.1|30364_30862_-	MaoC family dehydratase	NA	NA	NA	NA	NA
WP_019247165.1|31069_32005_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929582.1|32214_33006_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010929583.1|33048_34470_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_010929584.1|34625_35576_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814398.1|35572_36763_-	MFS transporter	NA	NA	NA	NA	NA
WP_010929585.1|37012_37924_+|tRNA	glycine--tRNA ligase subunit alpha	tRNA	NA	NA	NA	NA
WP_010929586.1|37925_40064_+|tRNA	glycine--tRNA ligase subunit beta	tRNA	NA	NA	NA	NA
WP_003814404.1|40060_40600_+	D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase	NA	NA	NA	NA	NA
WP_003814405.1|40603_41332_+	1-acyl-sn-glycerol-3-phosphate acyltransferase	NA	NA	NA	NA	NA
WP_010929587.1|41318_42212_+	M48 family metallopeptidase	NA	NA	NA	NA	NA
WP_019247766.1|42282_42678_+	lactoylglutathione lyase	NA	NA	NA	NA	NA
WP_003814412.1|42687_43218_+	peptide deformylase	NA	E3SLL2	Synechococcus_phage	35.4	3.7e-12
WP_010929588.1|43663_44614_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929589.1|45200_45749_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815265.1|45720_45957_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003815255.1|46084_46978_+	AEC family transporter	NA	NA	NA	NA	NA
WP_010929590.1|48147_49395_+	homoserine O-acetyltransferase	NA	NA	NA	NA	NA
WP_003817748.1|49391_50006_+	methionine biosynthesis protein MetW	NA	NA	NA	NA	NA
WP_010929591.1|50141_51092_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_029443813.1|51134_52391_+	muropeptide transporter	NA	NA	NA	NA	NA
WP_010929592.1|53622_54357_-	aspartate/glutamate racemase family protein	NA	NA	NA	NA	NA
WP_019247224.1|54362_54953_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.6	3.2e-20
WP_003817737.1|54977_55667_-	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_023852650.1|55663_56425_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010929594.1|56504_57404_-	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_005012808.1|57497_58448_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929595.1|59248_60475_-	type II toxin-antitoxin system HipA family toxin	NA	NA	NA	NA	NA
WP_047122776.1|60474_60888_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010929597.1|61077_62019_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019248755.1|62442_63417_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929599.1|63473_64055_-	DJ-1/PfpI family protein	NA	NA	NA	NA	NA
WP_010929600.1|64067_64370_-	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA	NA
WP_029443770.1|64488_65547_-	2Fe-2S iron-sulfur cluster binding domain-containing protein	NA	NA	NA	NA	NA
WP_019247832.1|65581_66853_-	TRAP transporter large permease	NA	NA	NA	NA	NA
WP_010929603.1|67482_68664_-	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929584.1|69085_70036_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 2
NZ_CP010844	Bordetella pertussis strain H559 chromosome, complete genome	4106490	232666	307009	4106490	transposase	uncultured_Mediterranean_phage(15.38%)	55	NA	NA
WP_010929591.1|232666_233617_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931563.1|233613_234804_-	voltage-gated potassium channel protein	NA	NA	NA	NA	NA
WP_010931562.1|234925_235690_-	phytanoyl-CoA dioxygenase family protein	NA	NA	NA	NA	NA
WP_003807735.1|235776_236880_-	AI-2E family transporter	NA	NA	NA	NA	NA
WP_010931561.1|237071_238088_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003815102.1|238369_238858_+	D-glycero-beta-D-manno-heptose 1-phosphate adenylyltransferase	NA	A0A1B1IUK5	uncultured_Mediterranean_phage	34.1	1.6e-17
WP_003817656.1|240201_240882_-	protein-L-isoaspartate O-methyltransferase	NA	A0A1B1IU40	uncultured_Mediterranean_phage	34.8	3.5e-15
WP_010931560.1|240943_241795_-	bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase	NA	NA	NA	NA	NA
WP_010931559.1|241791_242589_-	thiazole synthase	NA	NA	NA	NA	NA
WP_010931558.1|242692_243586_-	cobalamin-binding protein	NA	NA	NA	NA	NA
WP_010931557.1|243597_245487_-	TonB-dependent receptor	NA	A0A0P0I887	Acinetobacter_phage	30.8	7.6e-07
WP_010931556.1|245823_249597_+	methionine synthase	NA	A0A140XBC7	Dickeya_phage	50.8	8.6e-10
WP_010929591.1|249593_250544_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_162268689.1|250561_250738_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929826.1|250852_251545_-	3,4-dihydroxy-2-butanone-4-phosphate synthase	NA	A0A2H4PQS2	Staphylococcus_phage	41.6	6.3e-36
WP_003818232.1|251918_252419_-	SET domain-containing protein-lysine N-methyltransferase	NA	NA	NA	NA	NA
WP_023853391.1|252525_253446_+	bestrophin	NA	NA	NA	NA	NA
WP_010929823.1|253462_253939_-	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929822.1|254032_255883_+	biosynthetic-type acetolactate synthase large subunit	NA	E4WLQ6	Ostreococcus_tauri_virus	30.4	2.2e-59
WP_010929821.1|255938_256697_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010929820.1|256724_258158_-	aldehyde dehydrogenase family protein	NA	NA	NA	NA	NA
WP_003818225.1|258231_259011_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010929819.1|259023_259857_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_020699616.1|259865_260636_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	33.9	8.1e-24
WP_010929818.1|260635_261700_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929817.1|261851_264479_-	DNA topoisomerase III	NA	A0A0G2YA05	Acanthamoeba_polyphaga_mimivirus	25.4	6.1e-23
WP_010929816.1|264542_267164_+	GDYXXLXY domain-containing protein	NA	NA	NA	NA	NA
WP_003815964.1|268091_268550_-	DUF494 domain-containing protein	NA	NA	NA	NA	NA
WP_010929815.1|268828_271072_-	TonB-dependent hemoglobin/transferrin/lactoferrin family receptor	NA	NA	NA	NA	NA
WP_010929814.1|271268_273293_-	TRAP transporter permease	NA	NA	NA	NA	NA
WP_010929813.1|273416_274379_-	TAXI family TRAP transporter solute-binding subunit	NA	NA	NA	NA	NA
WP_010929812.1|274590_275730_+	DSD1 family PLP-dependent enzyme	NA	NA	NA	NA	NA
WP_010929811.1|275752_276718_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_004565905.1|276913_278104_+	acetylornithine transaminase	NA	A0A1V0SKB7	Klosneuvirus	26.7	4.4e-21
WP_003815955.1|278117_278363_+	DUF1653 domain-containing protein	NA	NA	NA	NA	NA
WP_010929810.1|278391_280413_-	acetyl/propionyl/methylcrotonyl-CoA carboxylase subunit alpha	NA	NA	NA	NA	NA
WP_003815953.1|280459_282067_-	methylcrotonoyl-CoA carboxylase	NA	A0A1B2ITV7	Pike_perch_iridovirus	57.3	5.4e-22
WP_010929808.1|282167_283337_-	acetyl-CoA C-acyltransferase	NA	NA	NA	NA	NA
WP_005012067.1|286218_287169_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929807.1|287192_288251_-	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
WP_003818201.1|288325_288700_+	MerR family DNA-binding transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|289254_290205_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929833.1|291760_292606_-	AraC family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929834.1|292693_293857_-	alpha-hydroxy-acid oxidizing protein	NA	NA	NA	NA	NA
WP_010929835.1|294275_295247_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929836.1|295285_296713_-	amidase	NA	NA	NA	NA	NA
WP_023853625.1|296832_297624_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010929838.1|297742_300196_-	DNA topoisomerase (ATP-hydrolyzing) subunit B	NA	G3M9Z3	Bacillus_virus	34.8	2.3e-112
WP_010929839.1|300290_301400_-	DNA polymerase III subunit beta	NA	B4UTW9	Rhizobium_phage	32.6	1.2e-41
WP_010929554.1|301402_302812_-	chromosomal replication initiator protein DnaA	NA	NA	NA	NA	NA
WP_003816025.1|303217_303352_+	50S ribosomal protein L34	NA	NA	NA	NA	NA
WP_003816026.1|303447_303819_+	ribonuclease P protein component	NA	NA	NA	NA	NA
WP_003816027.1|303815_304088_+	membrane protein insertion efficiency factor YidD	NA	A0A2H4PQM5	Staphylococcus_phage	52.2	7.0e-15
WP_010927254.1|304136_305828_+	membrane protein insertase YidC	NA	NA	NA	NA	NA
WP_005012067.1|306058_307009_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 4
NZ_CP010844	Bordetella pertussis strain H559 chromosome, complete genome	4106490	489372	607267	4106490	tRNA,transposase	Acinetobacter_phage(22.22%)	102	NA	NA
WP_005012067.1|489372_490323_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929956.1|490421_491372_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929957.1|492094_493369_+|tRNA	glutamyl-tRNA reductase	tRNA	NA	NA	NA	NA
WP_003807618.1|493455_494538_+	peptide chain release factor 1	NA	A0A0S4KWG0	Pseudomonas_phage	40.7	3.3e-07
WP_010929958.1|494548_495361_+	peptide chain release factor N(5)-glutamine methyltransferase	NA	NA	NA	NA	NA
WP_010929959.1|495397_495724_+	Grx4 family monothiol glutaredoxin	NA	NA	NA	NA	NA
WP_003807624.1|495728_496289_+	UbiX family flavin prenyltransferase	NA	NA	NA	NA	NA
WP_003819054.1|496529_497522_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929960.1|497540_498536_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_023853194.1|498551_499928_+	FAD binding domain-containing protein	NA	A0A0P0IVM8	Acinetobacter_phage	37.3	2.4e-18
WP_010929962.1|499920_502302_+	xanthine dehydrogenase family protein molybdopterin-binding subunit	NA	NA	NA	NA	NA
WP_019247263.1|502318_502708_+	SRPBCC family protein	NA	NA	NA	NA	NA
WP_020699695.1|502834_503065_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|503169_504120_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929963.1|504218_505169_-	septal ring lytic transglycosylase RlpA family protein	NA	F5B3X9	Synechococcus_phage	47.2	6.9e-17
WP_003815183.1|505165_506038_-	RNase adapter RapZ	NA	A0A1P8D5W0	Corynebacterium_phage	34.5	2.4e-08
WP_010929964.1|506968_508255_+	cytochrome c	NA	NA	NA	NA	NA
WP_010929965.1|508308_509235_-	HPr kinase/phosphorylase	NA	NA	NA	NA	NA
WP_010929966.1|509253_509709_-	PTS sugar transporter subunit IIA	NA	NA	NA	NA	NA
WP_003815177.1|510560_511352_-	LPS export ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	27.4	9.5e-20
WP_003815175.1|511383_512004_-	lipopolysaccharide transport periplasmic protein LptA	NA	NA	NA	NA	NA
WP_010929967.1|512000_512630_-	LPS export ABC transporter periplasmic protein LptC	NA	NA	NA	NA	NA
WP_003815172.1|512642_513251_-	HAD-IIIA family hydrolase	NA	E3T535	Cafeteria_roenbergensis_virus	26.1	5.2e-10
WP_003815171.1|513247_514237_-	KpsF/GutQ family sugar-phosphate isomerase	NA	A0A2P0VNK5	Tetraselmis_virus	37.7	4.3e-38
WP_010929968.1|514342_515557_+	formate-dependent phosphoribosylglycinamide formyltransferase	NA	NA	NA	NA	NA
WP_010929969.1|517508_518459_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929970.1|519892_521179_+	putative Na+/H+ antiporter	NA	NA	NA	NA	NA
WP_010929971.1|521344_521653_+	FmdB family transcriptional regulator	NA	NA	NA	NA	NA
WP_003807035.1|521653_522319_+	DUF502 domain-containing protein	NA	A0A2I7S9X1	Vibrio_phage	28.4	6.7e-11
WP_003807038.1|522359_524150_+|tRNA	aspartate--tRNA ligase	tRNA	A0A1V0SAC0	Catovirus	25.5	6.5e-08
WP_010929972.1|524262_525123_+	endonuclease/exonuclease/phosphatase family protein	NA	NA	NA	NA	NA
WP_010929973.1|525119_526325_+	cardiolipin synthase ClsB	NA	NA	NA	NA	NA
WP_010929974.1|526321_527206_-	DMT family transporter	NA	NA	NA	NA	NA
WP_033446233.1|528722_529157_-	carbon monoxide dehydrogenase	NA	NA	NA	NA	NA
WP_014905478.1|529119_530118_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931408.1|530229_531375_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931407.1|531449_532778_+	amidase	NA	NA	NA	NA	NA
WP_003815296.1|532811_533402_-	cysteine dioxygenase	NA	NA	NA	NA	NA
WP_010931406.1|533691_534486_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019249391.1|535655_536390_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010931404.1|536396_537263_-	copper resistance protein B	NA	NA	NA	NA	NA
WP_010931403.1|537270_539046_-	copper resistance system multicopper oxidase	NA	NA	NA	NA	NA
WP_029443756.1|539088_539586_-	cupredoxin family protein	NA	NA	NA	NA	NA
WP_005013747.1|539882_540833_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014486105.1|540931_541882_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931400.1|542222_543173_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931399.1|545496_546645_-	acyl-CoA dehydrogenase family protein	NA	NA	NA	NA	NA
WP_003817794.1|546689_547352_-	TetR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931397.1|547465_548458_+	nitronate monooxygenase	NA	NA	NA	NA	NA
WP_003815313.1|548454_549192_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003815315.1|549271_550093_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010931396.1|550181_551045_+	NAD(P)H-hydrate dehydratase	NA	NA	NA	NA	NA
WP_003815317.1|551171_551408_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931395.1|553382_554417_+	succinylglutamate desuccinylase/aspartoacylase family protein	NA	NA	NA	NA	NA
WP_003817805.1|554475_555453_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931394.1|555460_556381_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_023852622.1|556377_558078_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	32.7	1.0e-15
WP_010931393.1|558080_558986_+	hydrolase	NA	NA	NA	NA	NA
WP_010931392.1|559029_560163_+	M20 family metallopeptidase	NA	NA	NA	NA	NA
WP_005012808.1|560291_561242_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931391.1|561340_563410_-	UvrD-helicase domain-containing protein	NA	A7KV33	Bacillus_phage	37.3	2.6e-101
WP_019247688.1|563452_565555_-	primosomal protein N'	NA	NA	NA	NA	NA
WP_010931389.1|565861_566938_-	uroporphyrinogen decarboxylase	NA	NA	NA	NA	NA
WP_010931388.1|567013_567898_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003815341.1|568080_568503_-	F0F1 ATP synthase subunit epsilon	NA	NA	NA	NA	NA
WP_010931387.1|568512_569913_-	F0F1 ATP synthase subunit beta	NA	NA	NA	NA	NA
WP_003817813.1|569955_570861_-	F0F1 ATP synthase subunit gamma	NA	NA	NA	NA	NA
WP_010931386.1|570959_572501_-	F0F1 ATP synthase subunit alpha	NA	NA	NA	NA	NA
WP_003815348.1|572535_573075_-	F0F1 ATP synthase subunit delta	NA	NA	NA	NA	NA
WP_010931385.1|573087_573558_-	F0F1 ATP synthase subunit B	NA	NA	NA	NA	NA
WP_003815363.1|573695_573938_-	F0F1 ATP synthase subunit C	NA	NA	NA	NA	NA
WP_003815364.1|574054_574936_-	F0F1 ATP synthase subunit A	NA	NA	NA	NA	NA
WP_003815365.1|575008_575329_-	ATP synthase subunit I	NA	NA	NA	NA	NA
WP_023852617.1|576180_577131_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003815367.1|578454_579231_-	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_010931383.1|579265_581038_+	M61 family metallopeptidase	NA	NA	NA	NA	NA
WP_010931382.1|581039_581942_-	NAD(P)/FAD-dependent oxidoreductase	NA	G3MA85	Bacillus_virus	24.0	1.9e-08
WP_003817821.1|582066_582426_+	dihydroneopterin aldolase	NA	NA	NA	NA	NA
WP_010931381.1|582457_583420_+|tRNA	tRNA 2-thiocytidine(32) synthetase TtcA	tRNA	A0A0U2S5Z2	Escherichia_phage	64.5	4.6e-93
WP_005012067.1|583518_584469_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931380.1|584481_585417_-	D-2-hydroxyacid dehydrogenase family protein	NA	A0A1J0F959	Only_Syngen_Nebraska_virus	27.7	6.4e-15
WP_010931379.1|585476_586316_-	thiol:disulfide interchange protein DsbC	NA	NA	NA	NA	NA
WP_010931378.1|586312_587482_-	UbiH/UbiF family hydroxylase	NA	NA	NA	NA	NA
WP_003815379.1|587478_588768_-	murein transglycosylase A	NA	NA	NA	NA	NA
WP_003815381.1|588810_589185_-	Co2+/Mg2+ efflux protein ApaG	NA	NA	NA	NA	NA
WP_003815384.1|589290_590028_+	ribulose-phosphate 3-epimerase	NA	NA	NA	NA	NA
WP_010931377.1|590035_590740_+	phosphoglycolate phosphatase	NA	NA	NA	NA	NA
WP_010931376.1|591003_592524_+	anthranilate synthase component I	NA	S4VT78	Pandoravirus	32.1	9.0e-43
WP_003815390.1|592579_593143_+	aminodeoxychorismate/anthranilate synthase component II	NA	A0A0P0IKJ1	Acinetobacter_phage	62.1	1.1e-65
WP_003817833.1|593161_594193_+	anthranilate phosphoribosyltransferase	NA	A0A0N7IRD9	Acinetobacter_phage	42.7	7.4e-73
WP_010931375.1|594189_594978_+	indole-3-glycerol phosphate synthase TrpC	NA	A0A0P0IR83	Acinetobacter_phage	53.0	5.1e-66
WP_019247413.1|594998_595157_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023997720.1|595153_596143_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|597899_598850_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931374.1|600072_600975_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814312.1|600976_601831_-	formyltetrahydrofolate deformylase	NA	NA	NA	NA	NA
WP_010931373.1|601877_602987_-	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010931372.1|602997_603516_-	flavin reductase family protein	NA	NA	NA	NA	NA
WP_003814302.1|603545_604178_-	pyridoxamine 5'-phosphate oxidase	NA	NA	NA	NA	NA
WP_003814300.1|604249_604909_-	gamma-glutamylcyclotransferase	NA	NA	NA	NA	NA
WP_003814298.1|604905_606126_-	MFS transporter	NA	NA	NA	NA	NA
WP_019247745.1|606394_607267_+|tRNA	tRNA threonylcarbamoyladenosine dehydratase	tRNA	NA	NA	NA	NA
>prophage 5
NZ_CP010844	Bordetella pertussis strain H559 chromosome, complete genome	4106490	611681	675514	4106490	tRNA,transposase	Pandoravirus(12.5%)	47	NA	NA
WP_010931363.1|611681_612698_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003814287.1|612969_613596_-	aminotransferase class IV	NA	NA	NA	NA	NA
WP_010931367.1|613651_614779_-	aminodeoxychorismate synthase component I	NA	S4VT78	Pandoravirus	37.8	3.8e-38
WP_003814283.1|614784_620502_-	excinuclease ABC subunit UvrA	NA	A0A1B1IVR3	uncultured_Mediterranean_phage	39.5	1.0e-195
WP_003814277.1|621069_622014_-	LysR family transcriptional regulator	NA	A0A2P0ZL89	Lactobacillus_phage	23.2	8.4e-07
WP_003814275.1|622202_623138_+	glycosyltransferase family 2 protein	NA	NA	NA	NA	NA
WP_010931365.1|623255_624827_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019247692.1|624906_626115_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_019247693.1|626612_627530_+	DMT family transporter	NA	NA	NA	NA	NA
WP_003814254.1|629890_630112_+	glycine zipper 2TM domain-containing protein	NA	NA	NA	NA	NA
WP_010929632.1|630442_631459_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003814252.1|631543_631795_-	cell division topological specificity factor MinE	NA	NA	NA	NA	NA
WP_003814250.1|631798_632614_-	septum site-determining protein MinD	NA	NA	NA	NA	NA
WP_010931362.1|632726_633605_-	septum site-determining protein MinC	NA	NA	NA	NA	NA
WP_003820957.1|633716_635480_-|tRNA	glutamine--tRNA ligase/YqeY domain fusion protein	tRNA	A0A222YZ70	Escherichia_phage	50.0	5.0e-162
WP_010931361.1|635595_636936_+	cytochrome ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
WP_010927010.1|638005_639430_-	HAMP domain-containing protein	NA	NA	NA	NA	NA
WP_003814239.1|639429_640131_-	response regulator	NA	W8CYM9	Bacillus_phage	36.6	5.6e-32
WP_010930179.1|641635_642586_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994844.1|642681_643653_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931357.1|643657_644338_-	tellurite resistance TerB family protein	NA	NA	NA	NA	NA
WP_003814742.1|644475_644868_+	OsmC family protein	NA	NA	NA	NA	NA
WP_010931561.1|644975_645992_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003814739.1|646231_647017_-	enoyl-ACP reductase FabI	NA	NA	NA	NA	NA
WP_010931356.1|647111_648521_-	transglycosylase SLT domain-containing protein	NA	NA	NA	NA	NA
WP_010927090.1|648531_649332_-	hydroxyacylglutathione hydrolase	NA	NA	NA	NA	NA
WP_010931355.1|649352_650123_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_010931354.1|650165_650633_+	ribonuclease HI	NA	J9Q745	Salmonella_phage	50.7	5.6e-36
WP_005013747.1|650629_651580_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003818344.1|653528_654407_-	fatty acid desaturase	NA	NA	NA	NA	NA
WP_019247959.1|655333_658312_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931070.1|658665_659616_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931353.1|659612_660701_-	NAD(P)H-binding protein	NA	NA	NA	NA	NA
WP_010931352.1|660736_661600_-	MaoC family dehydratase N-terminal domain-containing protein	NA	NA	NA	NA	NA
WP_010931351.1|662739_663129_-	OB-fold domain-containing protein	NA	NA	NA	NA	NA
WP_014486103.1|663132_663915_-	crotonase/enoyl-CoA hydratase family protein	NA	NA	NA	NA	NA
WP_047122778.1|663948_664734_-	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010931349.1|665009_666149_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931348.1|666145_666937_+	ATP-binding cassette domain-containing protein	NA	A0A1M7XV31	Cedratvirus	29.4	1.7e-08
WP_010931347.1|666933_667683_+	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	27.8	1.9e-09
WP_010931346.1|667679_668552_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_004566224.1|668551_669553_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003808195.1|669549_670713_+	acyl-CoA dehydrogenase family protein	NA	NA	NA	NA	NA
WP_003808193.1|670738_671422_+	TetR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247312.1|671375_672710_+	AMP-binding protein	NA	NA	NA	NA	NA
WP_010931344.1|672702_673797_+	CoA transferase	NA	NA	NA	NA	NA
WP_005012067.1|674563_675514_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 6
NZ_CP010844	Bordetella pertussis strain H559 chromosome, complete genome	4106490	694425	771734	4106490	tRNA,transposase,protease,integrase	Bacillus_phage(20.0%)	58	741562:741580	761450:761468
WP_023995489.1|694425_695376_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931335.1|695474_696950_-	M81 family metallopeptidase	NA	NA	NA	NA	NA
WP_010931334.1|698537_699425_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931333.1|699427_700369_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931332.1|700414_701980_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931331.1|703757_705083_-	aspartate aminotransferase family protein	NA	NA	NA	NA	NA
WP_010931330.1|705265_706723_+	PLP-dependent aminotransferase family protein	NA	A0A1X9I5H2	Streptococcus_phage	21.1	7.6e-15
WP_003816386.1|706686_707184_-	dihydrofolate reductase	NA	A0A140HLG8	Bacillus_phage	38.9	3.0e-24
WP_010931328.1|707214_708186_-	thymidylate synthase	NA	J7KKN7	Erwinia_phage	33.3	4.8e-50
WP_003808444.1|708238_708676_-	OsmC family protein	NA	NA	NA	NA	NA
WP_010931327.1|708799_709468_+	2-polyprenyl-3-methyl-6-methoxy-1,4-benzoquinone monooxygenase	NA	NA	NA	NA	NA
WP_003808448.1|710196_711300_+	glycosyltransferase family 4 protein	NA	NA	NA	NA	NA
WP_171024626.1|711402_712680_+	Vi polysaccharide biosynthesis UDP-N-acetylglucosamine C-6 dehydrogenase TviB	NA	NA	NA	NA	NA
WP_010930472.1|712691_713717_+	Vi polysaccharide biosynthesis UDP-N-acetylglucosaminuronic acid C-4 epimerase TviC	NA	A0A2K9L4U8	Tupanvirus	44.2	4.7e-72
WP_010931325.1|713718_715089_+	polysaccharide biosynthesis C-terminal domain-containing protein	NA	NA	NA	NA	NA
WP_010931324.1|715089_716226_+	glycosyltransferase family 4 protein	NA	NA	NA	NA	NA
WP_010931323.1|716272_718198_+	asparagine synthase (glutamine-hydrolyzing)	NA	A0A2K9R7N5	Dishui_lake_phycodnavirus	29.0	1.0e-27
WP_010931322.1|718194_719316_+	glycosyltransferase family 4 protein	NA	NA	NA	NA	NA
WP_010931321.1|719312_720467_+	glycosyltransferase	NA	NA	NA	NA	NA
WP_010931320.1|720463_721594_+	glycosyltransferase family 4 protein	NA	NA	NA	NA	NA
WP_003808462.1|721601_723167_-	glucose-6-phosphate isomerase	NA	NA	NA	NA	NA
WP_010931319.1|723173_724556_-	phosphomannomutase/phosphoglucomutase	NA	A0A127AWJ1	Bacillus_phage	31.6	6.2e-51
WP_003808465.1|724834_725446_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931317.1|725537_726953_+	FAD-binding oxidoreductase	NA	NA	NA	NA	NA
WP_003818936.1|726970_727681_+	response regulator transcription factor	NA	NA	NA	NA	NA
WP_010931316.1|727677_729000_+	HAMP domain-containing histidine kinase	NA	NA	NA	NA	NA
WP_010931315.1|729079_731041_+	sulfatase-like hydrolase/transferase	NA	NA	NA	NA	NA
WP_003818932.1|731166_732480_-	fumarylacetoacetase	NA	NA	NA	NA	NA
WP_003818930.1|732588_733887_-	homogentisate 1,2-dioxygenase	NA	NA	NA	NA	NA
WP_010931314.1|734069_734978_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003808487.1|734987_735197_-	DUF2783 domain-containing protein	NA	NA	NA	NA	NA
WP_003808489.1|735208_736888_-	FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010931313.1|736989_737943_-	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
WP_010925978.1|738033_738861_-	bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase	NA	NA	NA	NA	NA
WP_010931312.1|738859_740746_+	tetratricopeptide repeat protein	NA	NA	NA	NA	NA
WP_003818921.1|740742_741342_+	lipoprotein localization protein LolB	NA	NA	NA	NA	NA
WP_010931311.1|741390_742290_+	4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase	NA	NA	NA	NA	NA
741562:741580	attL	CTGCCTGGCGTGGCCGAGT	NA	NA	NA	NA
WP_010931310.1|742498_743449_+	ribose-phosphate pyrophosphokinase	NA	A0A2K9L8D8	Tupanvirus	35.5	7.3e-43
WP_029443719.1|743571_744186_+	50S ribosomal protein L25/general stress protein Ctc	NA	NA	NA	NA	NA
WP_010931308.1|744314_744911_+|tRNA	aminoacyl-tRNA hydrolase	tRNA	NA	NA	NA	NA
WP_010931307.1|744907_745690_+|protease	CPBP family intramembrane metalloprotease	protease	NA	NA	NA	NA
WP_010931306.1|745762_746854_+	redox-regulated ATPase YchF	NA	NA	NA	NA	NA
WP_010931305.1|747133_748261_+|integrase	site-specific integrase	integrase	A0A1B0VMI6	Pseudomonas_phage	33.6	1.4e-48
WP_010931304.1|748602_749649_+	Fic family protein	NA	NA	NA	NA	NA
WP_010931303.1|749796_752916_+	DEAD/DEAH box helicase family protein	NA	NA	NA	NA	NA
WP_023994585.1|752917_755869_+	DNA methylase	NA	G8I4P9	Mycobacterium_phage	25.1	2.9e-21
WP_010931301.1|755884_757096_+	AAA family ATPase	NA	NA	NA	NA	NA
WP_010931070.1|757279_758230_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_077274087.1|758246_758741_+	DUF4276 family protein	NA	NA	NA	NA	NA
WP_019247740.1|758744_759002_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019248455.1|759545_760457_+	UvrD-helicase domain-containing protein	NA	NA	NA	NA	NA
WP_029443992.1|760538_760823_+	ATP-dependent helicase	NA	A0A1V0SIN4	Klosneuvirus	34.1	6.8e-05
WP_005012067.1|761606_762557_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
761450:761468	attR	ACTCGGCCACGCCAGGCAG	NA	NA	NA	NA
WP_019247178.1|762975_765540_-	autotransporter domain-containing protein	NA	NA	NA	NA	NA
WP_019247179.1|765584_767438_-	autotransporter-associated beta strand repeat-containing protein	NA	NA	NA	NA	NA
WP_014905963.1|767770_769342_+	winged helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_162291319.1|770610_770766_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|770783_771734_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 8
NZ_CP010844	Bordetella pertussis strain H559 chromosome, complete genome	4106490	1018718	1120061	4106490	tRNA,transposase	Bacillus_virus(30.0%)	94	NA	NA
WP_003813026.1|1018718_1019834_+|tRNA	tRNA 2-thiouridine(34) synthase MnmA	tRNA	NA	NA	NA	NA
WP_003813022.1|1019934_1020753_+	sulfite exporter TauE/SafE family protein	NA	NA	NA	NA	NA
WP_010931185.1|1020850_1021462_-	glutathione S-transferase	NA	NA	NA	NA	NA
WP_010931184.1|1021621_1022998_+	adenylosuccinate lyase	NA	A0A2H4UUU6	Bodo_saltans_virus	47.5	2.2e-109
WP_003813017.1|1023060_1023519_+	cytochrome c	NA	NA	NA	NA	NA
WP_003813013.1|1023603_1024299_-	cytochrome b/b6 domain-containing protein	NA	NA	NA	NA	NA
WP_003813010.1|1024360_1024642_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931182.1|1025204_1025957_+	DUF3053 domain-containing protein	NA	NA	NA	NA	NA
WP_003813006.1|1026001_1027078_+	AI-2E family transporter	NA	NA	NA	NA	NA
WP_005012067.1|1027074_1028025_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014486100.1|1028127_1028790_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019249309.1|1028884_1029055_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247599.1|1029407_1030409_+	amidase	NA	NA	NA	NA	NA
WP_003818702.1|1030411_1031608_+	CoA transferase	NA	NA	NA	NA	NA
WP_014486098.1|1031628_1032432_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_019247598.1|1032512_1032809_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247597.1|1032839_1033403_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_014486097.1|1033443_1034301_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_003818698.1|1034308_1035058_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	33.5	6.2e-29
WP_014486096.1|1035079_1035952_+	polysaccharide deacetylase family protein	NA	NA	NA	NA	NA
WP_014486095.1|1035980_1036760_+	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_014486094.1|1036793_1037591_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003808978.1|1040245_1040638_+	hypothetical protein	NA	NA	NA	NA	NA
WP_014486091.1|1040631_1041492_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003818691.1|1041495_1042458_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_014486089.1|1043234_1043924_+	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	28.8	4.8e-12
WP_010930208.1|1044784_1045735_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931181.1|1046084_1046954_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010926062.1|1047024_1047720_+	ankyrin repeat domain-containing protein	NA	NA	NA	NA	NA
WP_010931179.1|1047709_1048219_+	nucleoside deaminase	NA	NA	NA	NA	NA
WP_010931178.1|1048215_1049436_+	MFS transporter	NA	NA	NA	NA	NA
WP_010931177.1|1049383_1050286_-	transcriptional regulator GcvA	NA	NA	NA	NA	NA
WP_023997744.1|1051172_1052459_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931176.1|1052497_1053871_+	amidase	NA	NA	NA	NA	NA
WP_010931175.1|1053909_1054611_-	riboflavin synthase	NA	NA	NA	NA	NA
WP_010931174.1|1054909_1055899_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003809010.1|1055999_1056461_+	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931173.1|1056476_1057025_-	cysteine dioxygenase family protein	NA	NA	NA	NA	NA
WP_010931172.1|1057166_1058642_-	acyl--CoA ligase	NA	Q75ZG1	Hepacivirus	25.6	3.0e-35
WP_010931171.1|1058747_1059839_+	DUF2817 domain-containing protein	NA	NA	NA	NA	NA
WP_010931170.1|1059842_1060625_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931169.1|1060634_1061423_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	40.0	1.1e-33
WP_010931168.1|1062548_1062983_-	PaaI family thioesterase	NA	NA	NA	NA	NA
WP_010931167.1|1062979_1063990_-	zinc-binding dehydrogenase	NA	NA	NA	NA	NA
WP_003809025.1|1064033_1064960_-	VOC family protein	NA	NA	NA	NA	NA
WP_003809026.1|1065246_1065615_+	DUF861 domain-containing protein	NA	NA	NA	NA	NA
WP_154698394.1|1065667_1065814_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023853143.1|1065831_1066782_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931164.1|1069300_1069993_+	HD domain-containing protein	NA	A0A1D6Y7U0	Golden_Marseillevirus	29.9	4.7e-07
WP_010931163.1|1070065_1071265_+	aspartate/tyrosine/aromatic aminotransferase	NA	NA	NA	NA	NA
WP_003819549.1|1071282_1072188_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931162.1|1072303_1073233_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_010931161.1|1073258_1074605_+	MFS transporter	NA	NA	NA	NA	NA
WP_010931160.1|1074632_1075382_+	SDR family oxidoreductase	NA	A0A0M4JSW6	Mollivirus	26.4	1.2e-11
WP_010931159.1|1075395_1076178_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_005012067.1|1076370_1077321_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931158.1|1077382_1078492_-	porin	NA	NA	NA	NA	NA
WP_003815281.1|1079004_1079841_-	3-methyl-2-oxobutanoate hydroxymethyltransferase	NA	A0A0P0BXC9	Ostreococcus_lucimarinus_virus	33.3	1.6e-33
WP_023997028.1|1079910_1080876_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|1080872_1081823_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023998107.1|1081840_1082011_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247492.1|1082208_1082751_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|1083786_1084737_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247402.1|1084978_1085347_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019248356.1|1085392_1086517_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931156.1|1087651_1088404_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010931155.1|1088495_1089116_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_023852714.1|1089219_1090170_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931154.1|1090166_1092275_-	AsmA family protein	NA	NA	NA	NA	NA
WP_003820814.1|1092419_1093079_-	DNA-3-methyladenine glycosylase I	NA	NA	NA	NA	NA
WP_003820813.1|1093110_1093575_-	redox-sensitive transcriptional activator SoxR	NA	NA	NA	NA	NA
WP_019248355.1|1093850_1094036_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931153.1|1094087_1094840_-	DNA-binding protein	NA	NA	NA	NA	NA
WP_010931152.1|1094846_1096109_-	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_023852748.1|1096150_1097389_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003820806.1|1098466_1099594_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	32.3	1.2e-23
WP_003814524.1|1099604_1100432_-	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
WP_010931150.1|1100418_1101285_-	sugar ABC transporter permease	NA	NA	NA	NA	NA
WP_010931149.1|1102651_1103056_-	hypothetical protein	NA	NA	NA	NA	NA
WP_033446288.1|1103418_1104330_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003820799.1|1104344_1105055_+	FadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931147.1|1105051_1106296_+	DUF521 domain-containing protein	NA	NA	NA	NA	NA
WP_003820797.1|1106297_1106732_+	DUF126 domain-containing protein	NA	NA	NA	NA	NA
WP_003814535.1|1106760_1107066_+	antibiotic biosynthesis monooxygenase	NA	NA	NA	NA	NA
WP_005012067.1|1107164_1108115_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247277.1|1108171_1109326_-	iron-containing alcohol dehydrogenase	NA	NA	NA	NA	NA
WP_010930176.1|1109400_1110351_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931144.1|1110882_1111680_-	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019247918.1|1111727_1112381_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_003814544.1|1112337_1113426_-	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	36.4	8.7e-32
WP_003814547.1|1113590_1115816_-	glycoside hydrolase family 31 protein	NA	NA	NA	NA	NA
WP_023852715.1|1118093_1118990_+	inositol monophosphatase	NA	NA	NA	NA	NA
WP_162268686.1|1118943_1119093_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|1119110_1120061_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 9
NZ_CP010844	Bordetella pertussis strain H559 chromosome, complete genome	4106490	1150446	1221417	4106490	transposase,protease	uncultured_Mediterranean_phage(25.0%)	53	NA	NA
WP_005012808.1|1150446_1151397_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931130.1|1151453_1152566_+	Ldh family oxidoreductase	NA	NA	NA	NA	NA
WP_005012067.1|1154949_1155900_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931129.1|1156490_1157267_+	2-dehydro-3-deoxyglucarate aldolase	NA	NA	NA	NA	NA
WP_003812908.1|1157384_1157648_-	30S ribosomal protein S20	NA	NA	NA	NA	NA
WP_010931128.1|1157748_1158753_-	FecR domain-containing protein	NA	NA	NA	NA	NA
WP_010931127.1|1158953_1160555_-	murein biosynthesis integral membrane protein MurJ	NA	NA	NA	NA	NA
WP_010931126.1|1160580_1161339_-	3-hydroxyacyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_010931125.1|1161430_1162087_-	adenylate kinase	NA	NA	NA	NA	NA
WP_010931124.1|1162177_1162942_-	3-deoxy-manno-octulosonate cytidylyltransferase	NA	NA	NA	NA	NA
WP_003812895.1|1162951_1163140_-	Trm112 family protein	NA	NA	NA	NA	NA
WP_010931123.1|1163195_1164239_-	tetraacyldisaccharide 4'-kinase	NA	NA	NA	NA	NA
WP_010931122.1|1164235_1164649_-	biopolymer transporter ExbD	NA	NA	NA	NA	NA
WP_003812889.1|1164645_1165266_-	MotA/TolQ/ExbB proton channel family protein	NA	NA	NA	NA	NA
WP_005012067.1|1165546_1166497_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931120.1|1166664_1168056_+	exodeoxyribonuclease VII large subunit	NA	A0A1V0SD82	Indivirus	32.0	1.4e-29
WP_010931119.1|1168128_1168707_+	superoxide dismutase [Fe]	NA	NA	NA	NA	NA
WP_019247560.1|1168823_1170221_+	chloride channel protein	NA	NA	NA	NA	NA
WP_010931117.1|1170336_1171542_+	3-oxoadipyl-CoA thiolase	NA	NA	NA	NA	NA
WP_003820399.1|1171641_1172160_-	DUF192 domain-containing protein	NA	A0A1B1IUW8	uncultured_Mediterranean_phage	42.2	5.1e-14
WP_003812875.1|1172254_1172500_-	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	76.6	1.3e-20
WP_003820400.1|1172727_1173042_+|protease	ATP-dependent Clp protease adapter ClpS	protease	A0A1B1IT64	uncultured_Mediterranean_phage	43.8	1.2e-10
WP_010931116.1|1173131_1178321_+	alpha-2-macroglobulin family protein	NA	NA	NA	NA	NA
WP_010931115.1|1178317_1180486_+	penicillin-binding protein 1C	NA	NA	NA	NA	NA
WP_010931114.1|1180541_1182857_+|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	protease	A0A223W0B1	Agrobacterium_phage	41.9	4.1e-164
WP_003820402.1|1182861_1184181_+	PqiA/YebS family transporter subunit	NA	NA	NA	NA	NA
WP_014905522.1|1184199_1185873_+	MCE family protein	NA	NA	NA	NA	NA
WP_010931111.1|1185877_1186546_+	membrane integrity-associated transporter subunit PqiC	NA	NA	NA	NA	NA
WP_010931110.1|1186702_1190524_+	trifunctional transcriptional regulator/proline dehydrogenase/L-glutamate gamma-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
WP_154698391.1|1190678_1190837_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930800.1|1190854_1191805_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812857.1|1191826_1192972_+	branched-chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003820410.1|1193120_1194050_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003812851.1|1194046_1195135_+	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
WP_010931109.1|1195131_1195935_+	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	23.5	7.9e-14
WP_003812846.1|1195931_1196663_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	31.0	1.4e-12
WP_010931108.1|1196720_1198010_-	MFS transporter	NA	NA	NA	NA	NA
WP_010931107.1|1198106_1198709_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003812839.1|1203262_1203601_-	P-II family nitrogen regulator	NA	NA	NA	NA	NA
WP_010931105.1|1204308_1204575_+	accessory factor UbiK family protein	NA	NA	NA	NA	NA
WP_005012067.1|1206281_1207232_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931103.1|1207228_1208560_-	MFS transporter	NA	NA	NA	NA	NA
WP_010931102.1|1209820_1211821_+	cytochrome o ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
WP_003819722.1|1211813_1212455_+	cytochrome o ubiquinol oxidase subunit III	NA	NA	NA	NA	NA
WP_003809276.1|1212451_1212859_+	cytochrome o ubiquinol oxidase subunit IV	NA	NA	NA	NA	NA
WP_010931101.1|1212855_1213656_+	SURF1 family protein	NA	NA	NA	NA	NA
WP_010931100.1|1213730_1214435_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010931099.1|1214466_1215261_+	N-formylglutamate deformylase	NA	NA	NA	NA	NA
WP_005013747.1|1215257_1216208_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023995489.1|1216306_1217257_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812014.1|1217355_1217790_-	Cd(II)/Pb(II)-responsive transcriptional regulator	NA	NA	NA	NA	NA
WP_010931098.1|1217872_1220209_+	heavy metal translocating P-type ATPase	NA	E4ZFI9	Streptococcus_phage	42.8	3.2e-124
WP_010930525.1|1220400_1221417_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
>prophage 10
NZ_CP010844	Bordetella pertussis strain H559 chromosome, complete genome	4106490	1268811	1349686	4106490	tRNA,transposase	Bacillus_virus(25.0%)	59	NA	NA
WP_010927663.1|1268811_1269762_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931070.1|1269758_1270709_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931069.1|1270969_1271998_-	DctP family TRAP transporter solute-binding subunit	NA	NA	NA	NA	NA
WP_010931068.1|1272077_1273376_-	TRAP transporter large permease	NA	NA	NA	NA	NA
WP_003816847.1|1273372_1273954_-	TRAP transporter small permease	NA	NA	NA	NA	NA
WP_010931067.1|1274266_1278313_+	phosphoribosylformylglycinamidine synthase	NA	A9YX36	Burkholderia_phage	67.4	6.3e-160
WP_010931066.1|1278553_1286215_+	hemagglutinin repeat-containing protein	NA	A0A0R6PJK4	Moraxella_phage	30.9	7.3e-24
WP_005012067.1|1286211_1287162_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931065.1|1288301_1288775_-	MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931064.1|1288914_1289535_-	cupin domain-containing protein	NA	NA	NA	NA	NA
WP_010931063.1|1289670_1290471_+	aldolase	NA	NA	NA	NA	NA
WP_003810897.1|1290525_1291617_+	TRAP transporter substrate-binding protein DctP	NA	NA	NA	NA	NA
WP_010931062.1|1291638_1292082_-	6-carboxytetrahydropterin synthase QueD	NA	NA	NA	NA	NA
WP_010931061.1|1292110_1292743_-	7-carboxy-7-deazaguanine synthase	NA	NA	NA	NA	NA
WP_003810909.1|1292853_1293270_+|tRNA	aminoacyl-tRNA hydrolase	tRNA	NA	NA	NA	NA
WP_010931060.1|1293262_1293955_+	DUF2238 domain-containing protein	NA	NA	NA	NA	NA
WP_010931059.1|1294061_1294436_+	MAPEG family protein	NA	NA	NA	NA	NA
WP_010931058.1|1294512_1295322_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931057.1|1295417_1296362_+	dihydrodipicolinate synthase family protein	NA	NA	NA	NA	NA
WP_003816577.1|1296400_1297372_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003810921.1|1297462_1297900_-	carboxypeptidase regulatory-like domain-containing protein	NA	NA	NA	NA	NA
WP_029443733.1|1297958_1298840_-	NRDE family protein	NA	NA	NA	NA	NA
WP_010931054.1|1299843_1300704_+	amidohydrolase	NA	NA	NA	NA	NA
WP_010931053.1|1300736_1302119_+	FAD-dependent oxidoreductase	NA	A0A2P0ZL82	Lactobacillus_phage	28.4	7.9e-30
WP_010931052.1|1302115_1303135_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019247407.1|1303507_1304002_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010931051.1|1304009_1304750_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931050.1|1304830_1306435_-	glycerol-3-phosphate dehydrogenase/oxidase	NA	NA	NA	NA	NA
WP_010931049.1|1306474_1307263_-	DeoR family transcriptional regulator	NA	A0A077SK06	Escherichia_phage	30.4	2.0e-22
WP_010931048.1|1308465_1309554_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	28.1	9.7e-15
WP_010931047.1|1310434_1311247_+	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
WP_004568502.1|1311259_1311568_+	DUF2160 domain-containing protein	NA	NA	NA	NA	NA
WP_010931046.1|1311685_1313416_+	carbohydrate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019249399.1|1313417_1314563_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931044.1|1314692_1315361_-	DUF502 domain-containing protein	NA	NA	NA	NA	NA
WP_003810957.1|1315482_1315950_-	winged helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_019247521.1|1316085_1317468_+	D-amino acid dehydrogenase	NA	NA	NA	NA	NA
WP_014486086.1|1317464_1318589_+	DNA repair exonuclease	NA	NA	NA	NA	NA
WP_010931042.1|1318585_1321222_+	AAA family ATPase	NA	NA	NA	NA	NA
WP_010931070.1|1321637_1322588_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931041.1|1326334_1326946_-	DUF2239 family protein	NA	NA	NA	NA	NA
WP_003812368.1|1327168_1328629_+	IMP dehydrogenase	NA	A0A1V0SHK8	Klosneuvirus	41.3	1.6e-97
WP_010931040.1|1328725_1330318_+	glutamine-hydrolyzing GMP synthase	NA	A0A1V0SH76	Hokovirus	33.3	1.0e-17
WP_019247974.1|1330671_1330929_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003816876.1|1330930_1332271_+	type II toxin-antitoxin system HipA family toxin	NA	NA	NA	NA	NA
WP_010931038.1|1332366_1333056_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247976.1|1333068_1334499_+	MFS transporter	NA	NA	NA	NA	NA
WP_014905903.1|1336223_1337045_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931036.1|1337055_1338627_+	amidohydrolase	NA	NA	NA	NA	NA
WP_010931035.1|1338655_1339633_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931034.1|1339659_1340463_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	38.2	2.7e-30
WP_010931033.1|1340459_1341254_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_003816890.1|1341261_1342497_+	DUF521 domain-containing protein	NA	NA	NA	NA	NA
WP_010931032.1|1342489_1342924_+	DUF126 domain-containing protein	NA	NA	NA	NA	NA
WP_005013747.1|1343673_1344624_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931031.1|1345245_1346973_-	sulfate permease	NA	NA	NA	NA	NA
WP_010931030.1|1347084_1348443_+	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
WP_023853289.1|1348499_1348718_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|1348735_1349686_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 11
NZ_CP010844	Bordetella pertussis strain H559 chromosome, complete genome	4106490	1469077	1521228	4106490	tRNA,transposase	Salmonella_phage(25.0%)	46	NA	NA
WP_005013747.1|1469077_1470028_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023999730.1|1470045_1470198_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003814065.1|1470194_1470548_+	cytochrome c	NA	NA	NA	NA	NA
WP_003814063.1|1470560_1470923_+	cytochrome c	NA	NA	NA	NA	NA
WP_003814061.1|1470964_1471390_-	DUF1841 family protein	NA	NA	NA	NA	NA
WP_003814059.1|1471592_1472849_+	NADP-dependent isocitrate dehydrogenase	NA	Q77Z09	Phage_21	64.8	1.2e-11
WP_003814057.1|1473047_1474028_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005015028.1|1474177_1475419_+	O-antigen ligase family protein	NA	NA	NA	NA	NA
WP_005013747.1|1475517_1476468_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814052.1|1476476_1477172_-	two-component system response regulator KdpE	NA	NA	NA	NA	NA
WP_003814050.1|1479991_1480591_-	potassium-transporting ATPase subunit KdpC	NA	NA	NA	NA	NA
WP_010930950.1|1480601_1482767_-	potassium-transporting ATPase subunit KdpB	NA	M1HBF8	Paramecium_bursaria_Chlorella_virus	27.1	1.2e-24
WP_010930949.1|1482790_1484575_-	potassium-transporting ATPase subunit KdpA	NA	NA	NA	NA	NA
WP_017685545.1|1484574_1484664_-	K(+)-transporting ATPase subunit F	NA	NA	NA	NA	NA
WP_003814042.1|1485358_1485631_+	DUF4212 domain-containing protein	NA	NA	NA	NA	NA
WP_003814040.1|1485630_1487697_+	cation acetate symporter	NA	NA	NA	NA	NA
WP_010929577.1|1487693_1488644_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|1488742_1489693_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005015014.1|1489808_1490141_-	multidrug transporter	NA	NA	NA	NA	NA
WP_010929073.1|1490137_1490824_-	Smr/MutS family protein	NA	NA	NA	NA	NA
WP_010930948.1|1490810_1491770_-	thioredoxin-disulfide reductase	NA	A0A2I2L5E1	Orpheovirus	40.2	3.1e-57
WP_003814032.1|1491811_1494172_+	DNA translocase FtsK	NA	S5VNE3	Mycobacterium_phage	48.0	7.6e-81
WP_010930946.1|1494171_1494804_+	outer membrane lipoprotein chaperone LolA	NA	NA	NA	NA	NA
WP_010930945.1|1494905_1496246_+	replication-associated recombination protein A	NA	G3MBE0	Bacillus_virus	38.9	1.6e-75
WP_010930944.1|1496292_1497648_+|tRNA	serine--tRNA ligase	tRNA	A0A1B1IVT2	uncultured_Mediterranean_phage	47.5	1.6e-83
WP_170954289.1|1497773_1498418_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003814024.1|1498362_1498680_-	virulence factor	NA	NA	NA	NA	NA
WP_003814023.1|1498952_1499468_-	hypothetical protein	NA	T1SAR8	Salmonella_phage	44.6	5.1e-06
WP_003814022.1|1499561_1499723_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003814021.1|1499738_1500494_-	GGDEF domain-containing protein	NA	NA	NA	NA	NA
WP_019247690.1|1500832_1501039_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003814020.1|1501046_1501706_-	NAAT family transporter	NA	NA	NA	NA	NA
WP_010930941.1|1502000_1504205_-	TonB-dependent alcaligin siderophore receptor FauA	NA	NA	NA	NA	NA
WP_010930940.1|1504315_1505539_-	alcaligin siderophore export MFS transporter Bcr	NA	S4TR35	Salmonella_phage	29.4	9.8e-24
WP_003814017.1|1505661_1506636_-	alcaligin siderophore biosynthesis transcriptional regulator AlcR	NA	NA	NA	NA	NA
WP_005013753.1|1506703_1507897_-	alcaligin siderophore biosynthesis protein AlcE	NA	NA	NA	NA	NA
WP_003814016.1|1507911_1508712_-	alcaligin siderophore biosynthesis protein AlcD	NA	NA	NA	NA	NA
WP_010930939.1|1508708_1510565_-	alcaligin siderophore biosynthesis protein AlcC	NA	NA	NA	NA	NA
WP_003814014.1|1510561_1511167_-	alcaligin siderophore biosynthesis protein AlcB	NA	NA	NA	NA	NA
WP_003814013.1|1511185_1512571_-	alcaligin siderophore biosynthesis protein AlcA	NA	NA	NA	NA	NA
WP_003814012.1|1513296_1514523_+	cation:proton antiporter	NA	NA	NA	NA	NA
WP_003814011.1|1514611_1515394_+	3-hydroxybutyrate dehydrogenase	NA	NA	NA	NA	NA
WP_005012067.1|1515492_1516443_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814010.1|1516469_1517243_+	peroxide stress protein YaaA	NA	NA	NA	NA	NA
WP_003814009.1|1517254_1518496_+	MFS transporter	NA	NA	NA	NA	NA
WP_076879548.1|1520277_1521228_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 12
NZ_CP010844	Bordetella pertussis strain H559 chromosome, complete genome	4106490	1565153	1633239	4106490	tRNA,transposase	Streptococcus_virus(11.11%)	59	NA	NA
WP_010930416.1|1565153_1565642_+|tRNA	Cys-tRNA(Pro) deacylase	tRNA	NA	NA	NA	NA
WP_019248504.1|1565759_1566338_+	DJ-1/PfpI family protein	NA	NA	NA	NA	NA
WP_010930418.1|1566443_1566812_+	ribbon-helix-helix domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|1566910_1567861_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994932.1|1567867_1568980_-	D-alanyl-D-alanine endopeptidase	NA	NA	NA	NA	NA
WP_010930419.1|1569666_1570869_+	MFS transporter	NA	NA	NA	NA	NA
WP_004568212.1|1570904_1571051_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930420.1|1571072_1573733_+	PD-(D/E)XK nuclease family protein	NA	NA	NA	NA	NA
WP_010930421.1|1573745_1577150_+	UvrD-helicase domain-containing protein	NA	NA	NA	NA	NA
WP_023995689.1|1577817_1580043_+	DNA polymerase III subunit gamma/tau	NA	A0A1U9WR94	Streptococcus_virus	38.5	1.2e-43
WP_010930423.1|1580089_1580416_+	YbaB/EbfC family nucleoid-associated protein	NA	NA	NA	NA	NA
WP_010930424.1|1580466_1581075_+	recombination protein RecR	NA	NA	NA	NA	NA
WP_005013747.1|1581173_1582124_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930425.1|1582193_1582958_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930426.1|1582954_1583554_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930427.1|1583657_1584509_-	neutral zinc metallopeptidase	NA	A0A1I9SA48	Rhodococcus_phage	35.3	7.0e-37
WP_010928449.1|1584568_1585195_+	threonylcarbamoyl-AMP synthase	NA	NA	NA	NA	NA
WP_005012067.1|1585191_1586142_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019249265.1|1586240_1587353_-	DUF1513 domain-containing protein	NA	NA	NA	NA	NA
WP_019248041.1|1587342_1588344_-	imelysin family protein	NA	NA	NA	NA	NA
WP_019247498.1|1588449_1589961_-	c-type cytochrome	NA	NA	NA	NA	NA
WP_023853587.1|1589957_1591262_-	imelysin	NA	NA	NA	NA	NA
WP_010930431.1|1591373_1591934_-	membrane protein	NA	NA	NA	NA	NA
WP_010930432.1|1592201_1592756_+	NAD(P)H-dependent oxidoreductase	NA	A0A2P0ZL82	Lactobacillus_phage	32.0	1.7e-15
WP_010930433.1|1593211_1593427_-	dodecin domain-containing protein	NA	NA	NA	NA	NA
WP_033446228.1|1593681_1596279_+	DNA mismatch repair protein MutS	NA	A0A1V0SDQ0	Indivirus	22.6	1.5e-21
WP_010930435.1|1596275_1597463_+	cupin domain-containing protein	NA	NA	NA	NA	NA
WP_010930436.1|1598121_1598736_+	serotype 3 fimbrial subunit	NA	NA	NA	NA	NA
WP_010930437.1|1598824_1599952_-	outer membrane protein assembly factor BamC	NA	NA	NA	NA	NA
WP_033446216.1|1599963_1600869_-	4-hydroxy-tetrahydrodipicolinate synthase	NA	NA	NA	NA	NA
WP_010929591.1|1601761_1602712_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930439.1|1602893_1603646_+	glutamine ABC transporter substrate-binding protein GlnH	NA	NA	NA	NA	NA
WP_003811112.1|1603714_1604374_+	glutamine ABC transporter permease GlnP	NA	NA	NA	NA	NA
WP_003811113.1|1604370_1605099_+	glutamine ABC transporter ATP-binding protein GlnQ	NA	G9BWD6	Planktothrix_phage	39.3	3.3e-35
WP_010930440.1|1605111_1607391_-	bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase	NA	A0A1B1IUF0	uncultured_Mediterranean_phage	32.1	5.9e-06
WP_010930441.1|1607415_1607619_-	DNA-directed RNA polymerase subunit omega	NA	NA	NA	NA	NA
WP_010930442.1|1607660_1608293_-	guanylate kinase	NA	A0A218KC48	Bacillus_phage	33.9	2.4e-13
WP_010930443.1|1608428_1609346_-	c-type cytochrome	NA	NA	NA	NA	NA
WP_010930444.1|1609342_1610056_-	c-type cytochrome	NA	NA	NA	NA	NA
WP_003811135.1|1610293_1611064_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_003811137.1|1611068_1611668_-	C40 family peptidase	NA	A0A0A8WF62	Clostridium_phage	41.6	1.4e-20
WP_003811138.1|1611912_1613403_+	AMP nucleosidase	NA	NA	NA	NA	NA
WP_010926696.1|1613461_1613746_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010930445.1|1613883_1614039_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003811148.1|1614311_1615238_-	YicC family protein	NA	NA	NA	NA	NA
WP_003811149.1|1615374_1616115_+	ribonuclease PH	NA	NA	NA	NA	NA
WP_010930446.1|1616281_1617658_-	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_003811152.1|1617839_1618745_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930448.1|1620396_1622199_-	EAL domain-containing protein	NA	NA	NA	NA	NA
WP_010930449.1|1622325_1622967_+	RdgB/HAM1 family non-canonical purine NTP pyrophosphatase	NA	NA	NA	NA	NA
WP_005012808.1|1623065_1624016_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930450.1|1624037_1625258_+	oxygen-independent coproporphyrinogen III oxidase-like protein	NA	NA	NA	NA	NA
WP_003811164.1|1625443_1626856_+	type I glutamate--ammonia ligase	NA	NA	NA	NA	NA
WP_003811167.1|1626919_1627987_+	PAS domain-containing protein	NA	Q8QKV7	Ectocarpus_siliculosus_virus	23.5	1.1e-05
WP_010930451.1|1627986_1629474_+	nitrogen regulation protein NR(I)	NA	NA	NA	NA	NA
WP_010930452.1|1629483_1630428_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811176.1|1630587_1631286_+	pirin family protein	NA	NA	NA	NA	NA
WP_010930453.1|1631363_1632269_+	pirin family protein	NA	NA	NA	NA	NA
WP_005012067.1|1632288_1633239_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 13
NZ_CP010844	Bordetella pertussis strain H559 chromosome, complete genome	4106490	1669188	1724779	4106490	transposase	Brazilian_cedratvirus(25.0%)	47	NA	NA
WP_005013747.1|1669188_1670139_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930486.1|1670197_1670971_+	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_014486074.1|1670963_1672520_+	LTA synthase family protein	NA	NA	NA	NA	NA
WP_005013747.1|1672516_1673467_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003810741.1|1674793_1675396_-	TetR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003810743.1|1675635_1676337_-	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
WP_003816696.1|1676330_1677113_-	ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	25.8	2.0e-09
WP_005012808.1|1677297_1678248_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930483.1|1678346_1679084_-	TerC family protein	NA	A0A0S4KZH7	Pseudomonas_phage	46.6	4.1e-41
WP_010926609.1|1679273_1680032_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930482.1|1680078_1681068_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930481.1|1681245_1682214_-	transporter	NA	NA	NA	NA	NA
WP_010930480.1|1683753_1684722_+	AAA family ATPase	NA	NA	NA	NA	NA
WP_010930479.1|1684730_1685672_+	DUF58 domain-containing protein	NA	NA	NA	NA	NA
WP_010930478.1|1686145_1687156_+	VWA domain-containing protein	NA	NA	NA	NA	NA
WP_010930477.1|1687146_1688661_+	VWA domain-containing protein	NA	NA	NA	NA	NA
WP_010930476.1|1688657_1690004_+	BatD family protein	NA	NA	NA	NA	NA
WP_010930475.1|1690006_1691041_+	haloacid dehalogenase-like hydrolase	NA	NA	NA	NA	NA
WP_023852967.1|1691090_1692716_+	arylsulfatase	NA	A0A2P0VMN7	Tetraselmis_virus	52.2	2.0e-149
WP_005012067.1|1693268_1694219_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930487.1|1694323_1695271_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247865.1|1695324_1697139_-	sensor histidine kinase	NA	NA	NA	NA	NA
WP_010930489.1|1697131_1697806_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_023995112.1|1697935_1701010_+	autotransporter SphB2	NA	NA	NA	NA	NA
WP_019247905.1|1701023_1701323_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010930492.1|1701637_1702261_-	glutathione S-transferase family protein	NA	NA	NA	NA	NA
WP_010930493.1|1702504_1703374_+	TauD/TfdA family dioxygenase	NA	NA	NA	NA	NA
WP_010930494.1|1703351_1704296_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247909.1|1704381_1705308_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019247910.1|1705420_1706200_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930497.1|1706190_1707387_-	alpha-hydroxy-acid oxidizing protein	NA	NA	NA	NA	NA
WP_010930498.1|1707417_1708368_-	fumarylacetoacetate hydrolase family protein	NA	NA	NA	NA	NA
WP_010930499.1|1708589_1709279_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930500.1|1709343_1710099_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930501.1|1710150_1711143_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930502.1|1711152_1712106_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811538.1|1712221_1713184_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019249376.1|1714585_1715014_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|1715010_1715961_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_170954298.1|1716254_1716992_-	arsenical resistance protein ArsH	NA	A0A2H4J5V6	uncultured_Caudovirales_phage	68.2	1.3e-87
WP_010930504.1|1717415_1718603_-	MFS transporter	NA	NA	NA	NA	NA
WP_019249653.1|1718606_1718987_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010930506.1|1720706_1721678_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930507.1|1721691_1722405_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930508.1|1722409_1723327_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811452.1|1723433_1723730_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929588.1|1723828_1724779_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 14
NZ_CP010844	Bordetella pertussis strain H559 chromosome, complete genome	4106490	1746437	1838408	4106490	tRNA,transposase	Moraxella_phage(25.0%)	60	NA	NA
WP_005012067.1|1746437_1747388_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014905945.1|1747486_1748437_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003810867.1|1748460_1748925_-	GatB/YqeY domain-containing protein	NA	A0A0K2FLI9	Brevibacillus_phage	32.4	3.9e-05
WP_010930799.1|1749071_1750280_+	NO-inducible flavohemoprotein	NA	NA	NA	NA	NA
WP_010930798.1|1750323_1750761_+	Rrf2 family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930797.1|1750879_1752169_+	D-amino acid dehydrogenase	NA	NA	NA	NA	NA
WP_005012067.1|1754909_1755860_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930595.1|1755958_1756975_-	folate-binding protein YgfZ	NA	NA	NA	NA	NA
WP_010930596.1|1757153_1758188_+	endolytic transglycosylase MltG	NA	NA	NA	NA	NA
WP_003811733.1|1758184_1758811_+	dTMP kinase	NA	A0A1L2BX49	Bacteriophage	35.1	1.6e-22
WP_010930597.1|1758807_1759860_+	DNA polymerase III subunit delta'	NA	NA	NA	NA	NA
WP_010930598.1|1759909_1760680_+	TatD family hydrolase	NA	NA	NA	NA	NA
WP_010930599.1|1760730_1761567_+	ankyrin repeat domain-containing protein	NA	NA	NA	NA	NA
WP_010930600.1|1761762_1762503_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930601.1|1762577_1763321_+	glutamine ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_020699606.1|1763997_1764756_+	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	37.9	6.7e-31
WP_003811716.1|1765893_1767183_+	Glu/Leu/Phe/Val dehydrogenase	NA	NA	NA	NA	NA
WP_010930602.1|1768793_1770041_-	Zn-dependent hydrolase	NA	NA	NA	NA	NA
WP_010930603.1|1770050_1771760_-	thiamine pyrophosphate-binding protein	NA	A0A0P0YLY7	Yellowstone_lake_phycodnavirus	27.3	5.9e-35
WP_003811709.1|1771756_1772695_-	citrate lyase subunit beta	NA	NA	NA	NA	NA
WP_003811706.1|1772691_1773975_-	TRAP transporter large permease	NA	NA	NA	NA	NA
WP_010930604.1|1773978_1774461_-	TRAP transporter small permease	NA	NA	NA	NA	NA
WP_010930605.1|1774461_1775448_-	DctP family TRAP transporter solute-binding subunit	NA	NA	NA	NA	NA
WP_003811701.1|1775620_1776340_-	FadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005013747.1|1776456_1777407_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930606.1|1780592_1781942_+	amidase	NA	NA	NA	NA	NA
WP_010930607.1|1781999_1782794_+	putative hydro-lyase	NA	NA	NA	NA	NA
WP_003816497.1|1782927_1783803_+	EAL domain-containing protein	NA	NA	NA	NA	NA
WP_014486076.1|1783846_1787563_-	virulence factors two-component system sensor histidine kinase BvgS	NA	A0A1V0SGX0	Hokovirus	32.0	4.2e-33
WP_010930609.1|1787571_1788201_-	virulence factors two-component system response regulator BvgA	NA	NA	NA	NA	NA
WP_010930610.1|1788627_1799400_+	filamentous hemagglutinin/adhesin	NA	A0A0R6PJK4	Moraxella_phage	32.5	3.6e-29
WP_010930611.1|1800162_1800897_+	molecular chaperone FimB	NA	NA	NA	NA	NA
WP_010930612.1|1800959_1803581_+	fimbrial biogenesis outer membrane usher protein	NA	NA	NA	NA	NA
WP_019247160.1|1803561_1804692_+	type 1 fimbrial protein	NA	NA	NA	NA	NA
WP_010930614.1|1804684_1806439_+	filamentous hemagglutinin transporter protein FhaC	NA	NA	NA	NA	NA
WP_010930615.1|1807756_1808257_-	TRAP transporter small permease	NA	NA	NA	NA	NA
WP_010930616.1|1808263_1809238_-	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930617.1|1810794_1811286_-	TRAP transporter small permease	NA	NA	NA	NA	NA
WP_010930618.1|1811299_1812265_-	TRAP transporter substrate-binding protein DctP	NA	NA	NA	NA	NA
WP_019247163.1|1812285_1812987_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930620.1|1814161_1814674_+	winged helix DNA-binding protein	NA	NA	NA	NA	NA
WP_010930621.1|1814752_1818376_+	hydantoinase B/oxoprolinase family protein	NA	NA	NA	NA	NA
WP_010930622.1|1818389_1819421_-	C45 family peptidase	NA	NA	NA	NA	NA
WP_003809983.1|1820580_1821414_+	mechanosensitive ion channel	NA	NA	NA	NA	NA
WP_010930623.1|1821427_1822186_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010930624.1|1822347_1823340_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930625.1|1823557_1824334_-	RNA methyltransferase	NA	NA	NA	NA	NA
WP_010930626.1|1824441_1825224_+	inositol monophosphatase	NA	NA	NA	NA	NA
WP_003809992.1|1825350_1826937_+	TerC family protein	NA	A0A0R6PEZ3	Moraxella_phage	42.0	1.9e-35
WP_010930627.1|1826961_1827825_+	undecaprenyl-diphosphate phosphatase	NA	NA	NA	NA	NA
WP_019247344.1|1828032_1828809_-	UDP-2,3-diacylglucosamine diphosphatase	NA	NA	NA	NA	NA
WP_003809999.1|1828801_1829311_-	peptidylprolyl isomerase	NA	NA	NA	NA	NA
WP_010930629.1|1829439_1830123_-	tetratricopeptide repeat protein	NA	NA	NA	NA	NA
WP_010930630.1|1830362_1831823_+|tRNA	cysteine--tRNA ligase	tRNA	A0A2K9L6B7	Tupanvirus	27.9	2.5e-34
WP_003820119.1|1831842_1832487_+	DNA-3-methyladenine glycosylase 2 family protein	NA	NA	NA	NA	NA
WP_003810007.1|1832523_1833489_+	acetyl-CoA carboxylase carboxyltransferase subunit alpha	NA	NA	NA	NA	NA
WP_023997643.1|1833587_1834538_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930632.1|1834667_1835633_+|tRNA	tRNA lysidine(34) synthetase TilS	tRNA	NA	NA	NA	NA
WP_010930633.1|1835732_1836998_+	aspartate kinase	NA	NA	NA	NA	NA
WP_010929632.1|1837391_1838408_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
>prophage 15
NZ_CP010844	Bordetella pertussis strain H559 chromosome, complete genome	4106490	1958593	2028244	4106490	tRNA,transposase	Staphylococcus_phage(16.67%)	54	NA	NA
WP_003818515.1|1958593_1961251_-|tRNA	leucine--tRNA ligase	tRNA	A0A2H4PQS0	Staphylococcus_phage	39.0	3.3e-173
WP_010930709.1|1961328_1962531_-	MFS transporter	NA	NA	NA	NA	NA
WP_003810260.1|1962527_1963040_-	MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247822.1|1963162_1963600_-	HU family DNA-binding protein	NA	NA	NA	NA	NA
WP_010931070.1|1963876_1964827_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_077069014.1|1964925_1965876_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930710.1|1966129_1967935_+	STAS domain-containing protein	NA	A0A2H4J153	uncultured_Caudovirales_phage	27.5	2.2e-19
WP_010930711.1|1968048_1968216_-	50S ribosomal protein L33	NA	NA	NA	NA	NA
WP_003810297.1|1968279_1968516_-	50S ribosomal protein L28	NA	NA	NA	NA	NA
WP_010930712.1|1968884_1970084_-	multidrug effflux MFS transporter	NA	NA	NA	NA	NA
WP_010929591.1|1971599_1972550_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003818523.1|1973001_1974003_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003810306.1|1974175_1975033_+	proline/glycine betaine ABC transporter permease	NA	NA	NA	NA	NA
WP_003810308.1|1975029_1976292_+	glycine betaine/L-proline ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	36.6	6.8e-28
WP_003818524.1|1976392_1976767_+	tautomerase family protein	NA	NA	NA	NA	NA
WP_010930713.1|1976839_1978027_+	acetyl-CoA C-acyltransferase family protein	NA	NA	NA	NA	NA
WP_010930714.1|1978111_1978882_+	spermidine synthase	NA	NA	NA	NA	NA
WP_010930715.1|1978995_1979760_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930716.1|1979710_1981012_+	malonyl-CoA decarboxylase family protein	NA	NA	NA	NA	NA
WP_010930717.1|1981008_1981815_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003818532.1|1983559_1984531_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003818533.1|1984687_1985200_+	superoxide dismutase family protein	NA	Q9MC02	Salmonella_phage	52.3	1.8e-43
WP_010930718.1|1985358_1986333_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930719.1|1987333_1988128_+	ABC transporter ATP-binding protein	NA	A0A1V0SE00	Indivirus	25.7	5.1e-05
WP_003818535.1|1988153_1988960_-	TOBE domain-containing protein	NA	NA	NA	NA	NA
WP_003810329.1|1989070_1989661_+	DUF4136 domain-containing protein	NA	NA	NA	NA	NA
WP_010930720.1|1989671_1990850_+	patatin-like phospholipase family protein	NA	NA	NA	NA	NA
WP_010930721.1|1990952_1991327_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_019248531.1|1991579_1992911_+	efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
WP_019247651.1|1992977_1996208_+	multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_003810344.1|1997698_1998445_+	pyridoxine 5'-phosphate synthase	NA	NA	NA	NA	NA
WP_010930724.1|1998529_1998991_+	holo-ACP synthase	NA	NA	NA	NA	NA
WP_010930725.1|1999028_2000087_+	beta-N-acetylhexosaminidase	NA	NA	NA	NA	NA
WP_010930726.1|2000049_2001879_+	excinuclease ABC subunit UvrC	NA	NA	NA	NA	NA
WP_003810356.1|2001918_2002491_+	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	NA	NA	NA	NA	NA
WP_010930727.1|2003915_2004737_-	NADPH-dependent 7-cyano-7-deazaguanine reductase QueF	NA	A0A2I7SAX1	Vibrio_phage	37.6	4.1e-42
WP_010930728.1|2005055_2006378_+	isocitrate lyase	NA	NA	NA	NA	NA
WP_010930729.1|2006737_2007373_+	membrane protein	NA	NA	NA	NA	NA
WP_010930730.1|2007332_2008283_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930731.1|2009153_2010026_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010930732.1|2010103_2011243_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930733.1|2011601_2012858_+	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA	NA
WP_003816691.1|2012863_2013391_+	aromatic-ring-hydroxylating dioxygenase subunit beta	NA	NA	NA	NA	NA
WP_003816690.1|2013395_2014214_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003816687.1|2014213_2014936_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930735.1|2014957_2015272_+	2Fe-2S iron-sulfur cluster binding domain-containing protein	NA	NA	NA	NA	NA
WP_010930736.1|2015289_2016438_+	CoA transferase	NA	NA	NA	NA	NA
WP_003816680.1|2017339_2018659_-	AMP-binding protein	NA	NA	NA	NA	NA
WP_014486081.1|2018731_2019928_-	acetyl-CoA acetyltransferase	NA	NA	NA	NA	NA
WP_010930739.1|2019938_2021426_-	hydroxymethylglutaryl-CoA synthase family protein	NA	NA	NA	NA	NA
WP_010930740.1|2024020_2024920_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_023852887.1|2025057_2026023_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_005015810.1|2026121_2027072_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|2027293_2028244_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 16
NZ_CP010844	Bordetella pertussis strain H559 chromosome, complete genome	4106490	2039740	2089136	4106490	transposase	Erysipelothrix_phage(16.67%)	45	NA	NA
WP_005013747.1|2039740_2040691_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812172.1|2041828_2042125_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247707.1|2042299_2043652_+	glutathione-disulfide reductase	NA	A0A2K5B2C5	Erysipelothrix_phage	27.6	2.9e-45
WP_010930153.1|2043794_2044811_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010930748.1|2046790_2047804_-	pyridoxamine 5'-phosphate oxidase family protein	NA	NA	NA	NA	NA
WP_010930749.1|2047890_2048796_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003812179.1|2048952_2049297_+	exported protein	NA	NA	NA	NA	NA
WP_010930750.1|2049454_2049913_+	(2Fe-2S)-binding protein	NA	NA	NA	NA	NA
WP_010930751.1|2049926_2052143_+	xanthine dehydrogenase family protein molybdopterin-binding subunit	NA	NA	NA	NA	NA
WP_003812183.1|2052139_2053201_+	XdhC family protein	NA	NA	NA	NA	NA
WP_010930752.1|2053229_2054204_+	AraC family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930753.1|2054155_2054974_-	hypothetical protein	NA	A0A1B1INV8	uncultured_Mediterranean_phage	28.8	2.3e-16
WP_003812191.1|2054986_2055595_-	LON peptidase substrate-binding domain-containing protein	NA	NA	NA	NA	NA
WP_010930754.1|2055769_2056165_+	VOC family protein	NA	NA	NA	NA	NA
WP_010930755.1|2056183_2057623_+	MFS transporter	NA	A0A0M3UL24	Mycobacterium_phage	37.4	7.4e-55
WP_003812199.1|2057651_2057999_+	GFA family protein	NA	NA	NA	NA	NA
WP_010929577.1|2058017_2058968_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|2059620_2060571_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023997035.1|2060654_2062472_+	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	27.4	2.3e-37
WP_019247659.1|2062545_2063193_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930758.1|2063205_2064135_-	ZIP family metal transporter	NA	NA	NA	NA	NA
WP_014905663.1|2064304_2064769_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003816977.1|2065016_2065697_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003816975.1|2065745_2067437_+	STAS domain-containing protein	NA	A0A2H4J153	uncultured_Caudovirales_phage	27.3	5.0e-42
WP_010930760.1|2067452_2068004_-	SRPBCC family protein	NA	NA	NA	NA	NA
WP_003816971.1|2068000_2068372_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010930761.1|2068484_2069321_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_029443822.1|2069331_2069856_-	DUF302 domain-containing protein	NA	NA	NA	NA	NA
WP_003812228.1|2069953_2070133_+	DUF3008 family protein	NA	NA	NA	NA	NA
WP_010930763.1|2070262_2071237_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003816964.1|2071367_2071724_+	DUF1428 domain-containing protein	NA	NA	NA	NA	NA
WP_010930764.1|2071713_2072589_-	PhzF family phenazine biosynthesis protein	NA	NA	NA	NA	NA
WP_010930765.1|2072687_2073572_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930766.1|2073593_2074889_-	DUF445 domain-containing protein	NA	NA	NA	NA	NA
WP_003816959.1|2075837_2076488_+	NAD(P)H-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010930767.1|2076575_2078096_-	aldehyde dehydrogenase	NA	NA	NA	NA	NA
WP_010930768.1|2078353_2080219_+	sigma-54-dependent Fis family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|2081264_2082215_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_162268681.1|2082232_2082373_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930769.1|2083187_2083547_-	CidA/LrgA family protein	NA	NA	NA	NA	NA
WP_010930770.1|2083534_2084971_-	dethiobiotin synthase	NA	NA	NA	NA	NA
WP_010930771.1|2084967_2085621_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_010930772.1|2085617_2086811_-	8-amino-7-oxononanoate synthase	NA	NA	NA	NA	NA
WP_010930773.1|2086914_2088189_+	adenosylmethionine--8-amino-7-oxononanoate transaminase	NA	A0A1V0SKB7	Klosneuvirus	28.9	9.6e-14
WP_005012067.1|2088185_2089136_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 17
NZ_CP010844	Bordetella pertussis strain H559 chromosome, complete genome	4106490	2100340	2141031	4106490	tRNA,transposase,protease	Klosneuvirus(25.0%)	37	NA	NA
WP_005013747.1|2100340_2101291_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|2101389_2102340_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_047122784.1|2102299_2102713_-	transcriptional regulator	NA	A0A222YXG1	Escherichia_phage	59.0	3.8e-36
WP_003816708.1|2102997_2103297_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930783.1|2103706_2105989_-	RNA polymerase sigma factor RpoD	NA	A0A2I7SAT0	Vibrio_phage	30.1	3.2e-36
WP_124740709.1|2106454_2106649_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930784.1|2106674_2108705_-	DNA primase	NA	A0A0K1LMQ9	Caulobacter_phage	41.9	1.0e-65
WP_006218592.1|2108724_2108937_-	30S ribosomal protein S21	NA	NA	NA	NA	NA
WP_003810720.1|2109214_2109754_-	phosphoribosyltransferase	NA	NA	NA	NA	NA
WP_023852902.1|2109867_2111163_-	adenylosuccinate synthase	NA	A0A160ER07	Powai_lake_megavirus	33.5	3.0e-63
WP_010930786.1|2111239_2112397_-	ATP phosphoribosyltransferase regulatory subunit	NA	NA	NA	NA	NA
WP_010930787.1|2112580_2113480_-|protease	protease modulator HflC	protease	NA	NA	NA	NA
WP_010930788.1|2113498_2114803_-|protease	FtsH protease activity modulator HflK	protease	NA	NA	NA	NA
WP_010930789.1|2114768_2115875_-	GTPase HflX	NA	NA	NA	NA	NA
WP_003810707.1|2115962_2116199_-	RNA chaperone Hfq	NA	NA	NA	NA	NA
WP_010930790.1|2116337_2117408_-	histidinol-phosphate transaminase	NA	A0A1X6WGT4	Pacmanvirus	25.7	2.5e-15
WP_003810703.1|2117411_2118767_-	ribosome biogenesis GTPase Der	NA	NA	NA	NA	NA
WP_003810701.1|2118793_2119954_-	outer membrane protein assembly factor BamB	NA	NA	NA	NA	NA
WP_010930791.1|2119956_2120595_-	tetratricopeptide repeat protein	NA	NA	NA	NA	NA
WP_023995843.1|2120596_2121883_-|tRNA	histidine--tRNA ligase	tRNA	NA	NA	NA	NA
WP_010930793.1|2121941_2123237_-	flavodoxin-dependent (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase	NA	NA	NA	NA	NA
WP_003810693.1|2123243_2123750_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_004568542.1|2123746_2124895_-	23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN	NA	NA	NA	NA	NA
WP_003810689.1|2124922_2125348_-	nucleoside-diphosphate kinase	NA	D2E8E1	Anguillid_herpesvirus	43.2	2.1e-21
WP_010930794.1|2125670_2128553_+|tRNA	valine--tRNA ligase	tRNA	A0A1V0SK04	Klosneuvirus	37.1	3.7e-138
WP_023852900.1|2128645_2129401_-	MipA/OmpV family protein	NA	NA	NA	NA	NA
WP_010930796.1|2130166_2131516_+	two-component sensor histidine kinase	NA	NA	NA	NA	NA
WP_076879566.1|2131614_2132565_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930048.1|2132663_2133614_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930594.1|2133687_2134161_+	RidA family protein	NA	NA	NA	NA	NA
WP_010930593.1|2134186_2135395_+	aminotransferase class V-fold PLP-dependent enzyme	NA	NA	NA	NA	NA
WP_003816734.1|2135391_2136165_-|tRNA	tRNA (guanosine(37)-N1)-methyltransferase TrmD	tRNA	NA	NA	NA	NA
WP_014905757.1|2136164_2136788_-	ribosome maturation factor RimM	NA	NA	NA	NA	NA
WP_010926757.1|2136953_2137214_-	30S ribosomal protein S16	NA	NA	NA	NA	NA
WP_010930591.1|2137517_2138099_+	hypothetical protein	NA	NA	NA	NA	NA
WP_004568544.1|2138165_2138420_-	sulfurtransferase TusA family protein	NA	NA	NA	NA	NA
WP_010930590.1|2138406_2141031_-|tRNA	alanine--tRNA ligase	tRNA	A0A1V0SK38	Klosneuvirus	39.4	1.7e-81
>prophage 18
NZ_CP010844	Bordetella pertussis strain H559 chromosome, complete genome	4106490	2168814	2234363	4106490	tRNA,transposase,protease	Lake_Baikal_phage(20.0%)	58	NA	NA
WP_010929577.1|2168814_2169765_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930573.1|2169965_2170775_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_005013747.1|2170899_2171850_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930572.1|2171846_2172740_-	methylglyoxal synthase	NA	NA	NA	NA	NA
WP_003812452.1|2172864_2173059_-	Fe-S cluster assembly protein IscX	NA	NA	NA	NA	NA
WP_003812453.1|2173058_2173400_-	ISC system 2Fe-2S type ferredoxin	NA	NA	NA	NA	NA
WP_010930571.1|2173409_2175272_-	Fe-S protein assembly chaperone HscA	NA	A0A0N9QXN8	Chrysochromulina_ericina_virus	42.4	3.0e-101
WP_003812456.1|2175401_2175914_-	Fe-S protein assembly co-chaperone HscB	NA	NA	NA	NA	NA
WP_003812458.1|2175916_2176240_-	iron-sulfur cluster assembly protein IscA	NA	A0A2H4N7N5	Lake_Baikal_phage	52.8	6.8e-25
WP_003812460.1|2176241_2176652_-	Fe-S cluster assembly scaffold IscU	NA	A0A218MKD1	uncultured_virus	79.0	7.5e-53
WP_010930570.1|2176689_2177901_-	IscS subfamily cysteine desulfurase	NA	NA	NA	NA	NA
WP_003812463.1|2177918_2178431_-	Fe-S cluster assembly transcriptional regulator IscR	NA	NA	NA	NA	NA
WP_010930569.1|2178646_2179138_-	low molecular weight phosphotyrosine protein phosphatase	NA	NA	NA	NA	NA
WP_010930568.1|2179390_2181427_-	excinuclease ABC subunit UvrB	NA	NA	NA	NA	NA
WP_019247244.1|2181504_2182707_+	aspartate/tyrosine/aromatic aminotransferase	NA	NA	NA	NA	NA
WP_010930566.1|2182835_2183486_+	transcriptional repressor LexA	NA	A0A2H4JG58	uncultured_Caudovirales_phage	50.7	3.3e-10
WP_005012067.1|2185043_2185994_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247934.1|2186564_2186777_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247935.1|2186794_2187526_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003812478.1|2187560_2188202_-	CoA transferase subunit B	NA	NA	NA	NA	NA
WP_010930565.1|2188194_2188863_-	3-oxoacid CoA-transferase subunit A	NA	NA	NA	NA	NA
WP_010930564.1|2191075_2191852_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930563.1|2191873_2193031_-	thiolase	NA	NA	NA	NA	NA
WP_003812491.1|2193027_2193459_-	OB-fold domain-containing protein	NA	NA	NA	NA	NA
WP_015063637.1|2193455_2194259_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010930561.1|2194272_2194674_-	MaoC family dehydratase	NA	NA	NA	NA	NA
WP_010930560.1|2194740_2195712_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930559.1|2195777_2197001_-	CoA transferase	NA	NA	NA	NA	NA
WP_019247936.1|2197228_2198179_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930557.1|2198302_2200756_-	endopeptidase La	NA	A0A0R6PGP8	Moraxella_phage	52.0	1.5e-220
WP_010930556.1|2200944_2202249_-|protease	ATP-dependent Clp protease ATP-binding subunit ClpX	protease	G3M9Z9	Bacillus_virus	53.8	3.2e-129
WP_003812508.1|2202353_2203007_-	ATP-dependent Clp endopeptidase proteolytic subunit ClpP	NA	A0A223W000	Agrobacterium_phage	57.5	6.8e-56
WP_010930555.1|2203009_2204320_-	trigger factor	NA	NA	NA	NA	NA
WP_010930554.1|2204516_2205077_+	TIGR00645 family protein	NA	K4K6D8	Caulobacter_phage	33.7	1.0e-23
WP_010930553.1|2205188_2205389_-	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	64.4	7.4e-14
WP_003812519.1|2205734_2206301_-	DUF924 family protein	NA	NA	NA	NA	NA
WP_010930551.1|2206384_2206588_-	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	62.1	1.6e-16
WP_003812524.1|2206894_2207215_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003812526.1|2207256_2207538_-	membrane protein	NA	NA	NA	NA	NA
WP_010930550.1|2207612_2208869_-	autotransporter Phg	NA	NA	NA	NA	NA
WP_010930549.1|2209251_2209581_+	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
WP_003812536.1|2211151_2211973_+	2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase	NA	NA	NA	NA	NA
WP_010930548.1|2211972_2213112_+	succinyl-diaminopimelate desuccinylase	NA	NA	NA	NA	NA
WP_019247938.1|2213118_2214015_+	50S ribosomal protein L3 N(5)-glutamine methyltransferase	NA	NA	NA	NA	NA
WP_010930546.1|2214011_2215937_+	ATP-binding cassette domain-containing protein	NA	A0A2K9L0W2	Tupanvirus	31.8	1.1e-66
WP_010926400.1|2216296_2218909_+	TonB-dependent receptor	NA	NA	NA	NA	NA
WP_003812546.1|2218961_2221262_-	UvrD-helicase domain-containing protein	NA	A7KV33	Bacillus_phage	35.9	9.9e-110
WP_003812548.1|2221258_2222467_-	fatty acid desaturase	NA	NA	NA	NA	NA
WP_010930545.1|2222728_2223103_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|2223099_2224050_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_076879626.1|2224148_2226143_-	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	33.3	4.4e-21
WP_010930543.1|2226202_2227168_+	bifunctional riboflavin kinase/FAD synthetase	NA	NA	NA	NA	NA
WP_010930542.1|2227157_2230019_+|tRNA	isoleucine--tRNA ligase	tRNA	A0A1V0SJ93	Klosneuvirus	25.5	1.0e-71
WP_010930541.1|2230021_2230528_+	lipoprotein signal peptidase	NA	NA	NA	NA	NA
WP_010930540.1|2230632_2231841_+	bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC	NA	Q9HH70	Methanothermobacter_phage	30.0	3.8e-36
WP_033446178.1|2231842_2232781_-	membrane protein	NA	NA	NA	NA	NA
WP_010930538.1|2232942_2233416_+	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012808.1|2233412_2234363_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 19
NZ_CP010844	Bordetella pertussis strain H559 chromosome, complete genome	4106490	2320540	2384117	4106490	transposase,protease	uncultured_Caudovirales_phage(11.11%)	49	NA	NA
WP_010931070.1|2320540_2321491_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003809615.1|2321792_2322269_-	transcription elongation factor GreA	NA	NA	NA	NA	NA
WP_019247142.1|2322892_2324530_+	Tar ligand binding domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	30.2	8.8e-12
WP_003809610.1|2324560_2325874_-	pyrimidine permease	NA	Q9KX94	Enterobacteria_phage	67.1	2.1e-149
WP_004568205.1|2326007_2326325_+	hypothetical protein	NA	NA	NA	NA	NA
WP_023852827.1|2326425_2327748_+	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_010929591.1|2327744_2328695_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|2328793_2329744_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930836.1|2330273_2331296_-	putative 2-aminoethylphosphonate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003820286.1|2331324_2332155_-	phosphonoacetaldehyde hydrolase	NA	NA	NA	NA	NA
WP_029443740.1|2332171_2333869_-	putative 2-aminoethylphosphonate ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_010930838.1|2333933_2335010_-	putative 2-aminoethylphosphonate ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	35.8	1.2e-28
WP_010930839.1|2335169_2336033_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930840.1|2336063_2336633_+	HD domain-containing protein	NA	NA	NA	NA	NA
WP_010930841.1|2336649_2337501_-	sulfurtransferase	NA	NA	NA	NA	NA
WP_003813142.1|2338558_2339440_+|protease	protease HtpX	protease	NA	NA	NA	NA
WP_010930842.1|2339514_2340504_-	quinone oxidoreductase	NA	NA	NA	NA	NA
WP_010930843.1|2340566_2341517_-	DMT family transporter	NA	NA	NA	NA	NA
WP_003813147.1|2341579_2342437_+	DMT family transporter	NA	NA	NA	NA	NA
WP_003813149.1|2342496_2342985_+	MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930844.1|2344557_2345748_+	efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
WP_010930845.1|2345744_2347331_+	DHA2 family efflux MFS transporter permease subunit	NA	NA	NA	NA	NA
WP_010930846.1|2347349_2348417_-	tartrate dehydrogenase	NA	NA	NA	NA	NA
WP_010930847.1|2348521_2350066_-	PLP-dependent aminotransferase family protein	NA	A0A1X9I5H2	Streptococcus_phage	25.4	3.1e-14
WP_010930848.1|2350485_2352060_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930849.1|2352167_2353184_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_003813165.1|2353180_2354020_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010930850.1|2354024_2355662_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.6	3.6e-21
WP_005013747.1|2355658_2356609_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_162268683.1|2356626_2356770_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930851.1|2356751_2358026_+	4-aminobutyrate--2-oxoglutarate transaminase	NA	A0A1V0SKB7	Klosneuvirus	27.9	1.6e-24
WP_010930852.1|2358055_2358346_+	cupin domain-containing protein	NA	NA	NA	NA	NA
WP_047122810.1|2358418_2359432_+	histone deacetylase family protein	NA	A0A2K9L4C2	Tupanvirus	35.2	1.7e-42
WP_010930854.1|2359451_2360714_+	Zn-dependent hydrolase	NA	NA	NA	NA	NA
WP_010930855.1|2360716_2361640_+	DMT family transporter	NA	NA	NA	NA	NA
WP_010930856.1|2361636_2363130_+	aldehyde dehydrogenase	NA	NA	NA	NA	NA
WP_010930857.1|2363140_2364073_-	glyoxylate/hydroxypyruvate reductase A	NA	NA	NA	NA	NA
WP_076879554.1|2364254_2365580_+	aspartate aminotransferase family protein	NA	A0A1C9EHH3	Mycobacterium_phage	22.5	1.8e-07
WP_023853659.1|2365614_2366958_-	sodium:alanine symporter family protein	NA	NA	NA	NA	NA
WP_023853666.1|2367030_2368551_-	DUF853 domain-containing protein	NA	A0A248XCZ8	Klebsiella_phage	44.9	1.7e-78
WP_010930861.1|2368705_2369437_+	YebC/PmpR family DNA-binding transcriptional regulator	NA	NA	NA	NA	NA
WP_010930862.1|2369504_2370845_+	phosphoribosylamine--glycine ligase	NA	NA	NA	NA	NA
WP_010930863.1|2370860_2371772_+	oxygen-dependent coproporphyrinogen oxidase	NA	NA	NA	NA	NA
WP_010930864.1|2371762_2372356_+	nicotinate (nicotinamide) nucleotide adenylyltransferase	NA	NA	NA	NA	NA
WP_003813196.1|2372417_2372804_+	ribosome silencing factor	NA	NA	NA	NA	NA
WP_003813199.1|2372815_2373286_+	23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH	NA	NA	NA	NA	NA
WP_010930865.1|2373297_2373921_+	septum formation inhibitor Maf	NA	NA	NA	NA	NA
WP_010930866.1|2373941_2376689_-	autotransporter Vag8	NA	NA	NA	NA	NA
WP_005012808.1|2383166_2384117_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 20
NZ_CP010844	Bordetella pertussis strain H559 chromosome, complete genome	4106490	2529058	2587302	4106490	tRNA,transposase	Planktothrix_phage(28.57%)	54	NA	NA
WP_005012067.1|2529058_2530009_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930388.1|2530488_2531145_-	phosphoribosylanthranilate isomerase	NA	NA	NA	NA	NA
WP_010930387.1|2531159_2532827_-	TRAP transporter large permease subunit	NA	NA	NA	NA	NA
WP_010930386.1|2532829_2533459_-	TRAP transporter small permease subunit	NA	NA	NA	NA	NA
WP_014486072.1|2533670_2534765_-	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930384.1|2534909_2535722_-|tRNA	tRNA pseudouridine(38-40) synthase TruA	tRNA	NA	NA	NA	NA
WP_023853502.1|2535725_2537429_-	FimV N-terminal domain protein	NA	NA	NA	NA	NA
WP_010930382.1|2537479_2538610_-	aspartate-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
WP_010930381.1|2538796_2539873_-	3-isopropylmalate dehydrogenase	NA	NA	NA	NA	NA
WP_010930380.1|2539954_2540605_-	3-isopropylmalate dehydratase small subunit	NA	NA	NA	NA	NA
WP_010930379.1|2540619_2542023_-	3-isopropylmalate dehydratase large subunit	NA	NA	NA	NA	NA
WP_004567445.1|2542306_2543125_-	substrate-binding domain-containing protein	NA	NA	NA	NA	NA
WP_010930378.1|2543121_2543826_-	phosphate ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.0	2.6e-13
WP_010930377.1|2544725_2545841_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_004567447.1|2545874_2546249_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930376.1|2546271_2547429_-	formate dehydrogenase subunit gamma	NA	NA	NA	NA	NA
WP_003812666.1|2547441_2547675_-	lipoprotein	NA	NA	NA	NA	NA
WP_019247523.1|2548309_2551279_-	formate dehydrogenase subunit alpha	NA	NA	NA	NA	NA
WP_023853518.1|2551293_2551503_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019248667.1|2551654_2552284_-	molecular chaperone TorD family protein	NA	NA	NA	NA	NA
WP_010930373.1|2552280_2554371_-	4Fe-4S binding protein	NA	NA	NA	NA	NA
WP_010930372.1|2554394_2555075_-	DUF3306 domain-containing protein	NA	NA	NA	NA	NA
WP_003820494.1|2555071_2555632_-	DUF3305 domain-containing protein	NA	NA	NA	NA	NA
WP_004567450.1|2555638_2556736_-	iron-sulfur cluster carrier protein ApbC	NA	NA	NA	NA	NA
WP_010930371.1|2556888_2557482_+	molybdenum cofactor guanylyltransferase MobA	NA	NA	NA	NA	NA
WP_010930370.1|2557478_2558771_+	molybdopterin molybdotransferase MoeA	NA	NA	NA	NA	NA
WP_003812685.1|2558784_2559327_+	molybdopterin-guanine dinucleotide biosynthesis protein B	NA	NA	NA	NA	NA
WP_010930369.1|2559336_2560173_-	M48 family metallopeptidase	NA	NA	NA	NA	NA
WP_003820487.1|2560206_2561268_-	chorismate synthase	NA	A0A291AU41	Pandoravirus	42.8	2.9e-80
WP_019247210.1|2561309_2562362_-	EAL domain-containing protein	NA	NA	NA	NA	NA
WP_019247209.1|2562377_2562680_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012808.1|2562821_2563772_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_162268680.1|2563789_2563954_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930368.1|2563950_2565645_+	iron ABC transporter permease	NA	NA	NA	NA	NA
WP_003809599.1|2565641_2566727_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	37.7	6.4e-27
WP_010930367.1|2566774_2567674_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003809593.1|2567684_2568329_+	histidine phosphatase family protein	NA	NA	NA	NA	NA
WP_010930366.1|2569350_2572593_-	carbamoyl-phosphate synthase large subunit	NA	NA	NA	NA	NA
WP_023852833.1|2572603_2573758_-	glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit	NA	R4TGJ8	Halovirus	35.4	3.3e-53
WP_010930364.1|2573984_2574947_+	transaldolase	NA	H6WFR1	Cyanophage	29.2	7.5e-11
WP_005013747.1|2575045_2575996_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930363.1|2576094_2577045_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930362.1|2577054_2577744_-	VIT family protein	NA	NA	NA	NA	NA
WP_003811741.1|2577803_2578241_-	PaaI family thioesterase	NA	NA	NA	NA	NA
WP_003811743.1|2578286_2579180_-	3-hydroxyisobutyrate dehydrogenase	NA	NA	NA	NA	NA
WP_003811746.1|2579227_2580400_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003811748.1|2580396_2581551_-	acyl-CoA dehydrogenase family protein	NA	NA	NA	NA	NA
WP_003811750.1|2581747_2582098_-	RnfH family protein	NA	NA	NA	NA	NA
WP_003811752.1|2582087_2582522_-	type II toxin-antitoxin system RatA family toxin	NA	NA	NA	NA	NA
WP_010930800.1|2582538_2583489_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811754.1|2583636_2584104_+	SsrA-binding protein SmpB	NA	W5RAM5	Staphylococcus_phage	45.1	6.2e-27
WP_010930360.1|2584084_2585242_-	GGDEF domain-containing protein	NA	A0A127AWB9	Bacillus_phage	36.2	2.3e-14
WP_003811759.1|2585307_2586234_-	paraslipin	NA	NA	NA	NA	NA
WP_005012067.1|2586351_2587302_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 21
NZ_CP010844	Bordetella pertussis strain H559 chromosome, complete genome	4106490	2629581	2696081	4106490	transposase	uncultured_Caudovirales_phage(40.0%)	56	NA	NA
WP_005012067.1|2629581_2630532_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811850.1|2630901_2631474_+	flagellar basal body-associated protein FliL	NA	NA	NA	NA	NA
WP_003811852.1|2631476_2632487_+	flagellar motor switch protein FliM	NA	NA	NA	NA	NA
WP_010930335.1|2632479_2632980_+	flagellar motor switch protein FliN	NA	NA	NA	NA	NA
WP_003811855.1|2632990_2633332_+	flagellar biosynthetic protein FliO	NA	NA	NA	NA	NA
WP_015041547.1|2633343_2634135_+	flagellar type III secretion system pore protein FliP	NA	NA	NA	NA	NA
WP_003811859.1|2634151_2634421_+	flagellar biosynthesis protein FliQ	NA	NA	NA	NA	NA
WP_010930333.1|2634443_2635232_+	flagellar biosynthetic protein FliR	NA	NA	NA	NA	NA
WP_010929632.1|2635278_2636295_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_014486070.1|2636511_2637954_-	PAS domain-containing protein	NA	A0A1B0V854	Salmonella_phage	41.8	1.0e-35
WP_010930332.1|2638132_2639752_-	Tar ligand binding domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	45.3	1.5e-08
WP_010930331.1|2639872_2641693_-	Tar ligand binding domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	52.6	6.4e-11
WP_010930330.1|2641771_2643304_-	flagellar hook-associated protein FlgL	NA	NA	NA	NA	NA
WP_010930329.1|2643337_2644984_-	flagellar hook-associated protein FlgK	NA	NA	NA	NA	NA
WP_010930328.1|2645053_2646076_-	flagellar assembly peptidoglycan hydrolase FlgJ	NA	A0A088F6W1	Sulfitobacter_phage	31.4	1.9e-12
WP_010930327.1|2646093_2647227_-	flagellar basal body P-ring protein FlgI	NA	NA	NA	NA	NA
WP_010930326.1|2647229_2647919_-	flagellar basal body L-ring protein FlgH	NA	NA	NA	NA	NA
WP_010930325.1|2647918_2648704_-	flagellar basal-body rod protein FlgG	NA	NA	NA	NA	NA
WP_003817181.1|2648747_2649512_-	flagellar basal body rod protein FlgF	NA	NA	NA	NA	NA
WP_003817180.1|2649550_2650972_-	flagellar hook-basal body complex protein	NA	NA	NA	NA	NA
WP_010930324.1|2651037_2651742_-	flagellar basal body rod modification protein FlgD	NA	NA	NA	NA	NA
WP_003817176.1|2651789_2652209_-	flagellar basal body rod protein FlgC	NA	NA	NA	NA	NA
WP_010930323.1|2652221_2652629_-	flagellar basal body rod protein FlgB	NA	NA	NA	NA	NA
WP_010930322.1|2652812_2653523_+	flagellar basal body P-ring formation protein FlgA	NA	NA	NA	NA	NA
WP_003817172.1|2653649_2653940_+	flagellar biosynthesis anti-sigma factor FlgM	NA	NA	NA	NA	NA
WP_003817170.1|2653957_2654440_+	flagellar protein FlgN	NA	NA	NA	NA	NA
WP_010930321.1|2658945_2660100_-	flagellar type III secretion system protein FlhB	NA	NA	NA	NA	NA
WP_010931363.1|2660405_2661422_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010930319.1|2661668_2662457_+	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003812020.1|2662523_2663204_+	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003812022.1|2663200_2663971_+	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	39.1	9.8e-30
WP_010930208.1|2664069_2665020_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811401.1|2665075_2665993_-	2-dehydropantoate 2-reductase	NA	NA	NA	NA	NA
WP_003811400.1|2666003_2667182_-	mandelate racemase/muconate lactonizing enzyme family protein	NA	NA	NA	NA	NA
WP_010930318.1|2667201_2668197_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003811396.1|2669785_2670394_+	3-isopropylmalate dehydratase small subunit	NA	NA	NA	NA	NA
WP_003811393.1|2670381_2671422_+	LacI family DNA-binding transcriptional regulator	NA	NA	NA	NA	NA
WP_003811391.1|2671439_2672402_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003811389.1|2672398_2673592_-	CoA transferase	NA	NA	NA	NA	NA
WP_010930317.1|2673588_2674386_-	citryl-CoA lyase	NA	NA	NA	NA	NA
WP_014486069.1|2674411_2675398_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930316.1|2675416_2677456_-	acetate--CoA ligase family protein	NA	NA	NA	NA	NA
WP_010930315.1|2677657_2678338_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930314.1|2678351_2679263_-	CoA ester lyase	NA	NA	NA	NA	NA
WP_003811381.1|2679259_2679838_-	NAD(P)H-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010930313.1|2679976_2680882_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930312.1|2680889_2684309_+	TM0106 family RecB-like putative nuclease	NA	NA	NA	NA	NA
WP_010930311.1|2684296_2686897_-	BP1344/BB2830 family autotransporter	NA	NA	NA	NA	NA
WP_003811375.1|2687852_2688485_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003811372.1|2688878_2689637_+	endonuclease/exonuclease/phosphatase family protein	NA	NA	NA	NA	NA
WP_003811370.1|2689633_2690836_+	cardiolipin synthase ClsB	NA	NA	NA	NA	NA
WP_010930208.1|2691023_2691974_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930310.1|2692881_2694027_+	DUF3182 family protein	NA	NA	NA	NA	NA
WP_019247449.1|2694013_2694769_+	alpha/beta fold hydrolase	NA	NA	NA	NA	NA
WP_003811361.1|2694885_2695065_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930208.1|2695130_2696081_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 22
NZ_CP010844	Bordetella pertussis strain H559 chromosome, complete genome	4106490	2894418	2967743	4106490	tRNA,transposase,protease	Catovirus(22.22%)	53	NA	NA
WP_010930211.1|2894418_2895774_-|tRNA	tryptophan--tRNA ligase	tRNA	NA	NA	NA	NA
WP_003813618.1|2897252_2897975_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930207.1|2898029_2899013_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_005012067.1|2899142_2900093_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003813621.1|2900089_2900992_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930206.1|2901079_2901838_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_023853245.1|2901850_2902942_-	cell division protein ZapE	NA	NA	NA	NA	NA
WP_003813626.1|2903039_2904467_-	dihydrolipoyl dehydrogenase	NA	A0A2K5B2C5	Erysipelothrix_phage	28.1	2.1e-41
WP_010930204.1|2904696_2905911_-	2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase	NA	NA	NA	NA	NA
WP_003813631.1|2905956_2908827_-	2-oxoglutarate dehydrogenase E1 component	NA	NA	NA	NA	NA
WP_010930202.1|2911237_2911726_-	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930201.1|2911851_2914548_+	alpha-ketoglutarate dehydrogenase	NA	NA	NA	NA	NA
WP_010930200.1|2914702_2916985_+	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
WP_019248935.1|2917158_2917782_+	serotype 2 fimbrial subunit	NA	NA	NA	NA	NA
WP_010930198.1|2917880_2918831_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812405.1|2918877_2919432_-	transcription elongation factor GreB	NA	NA	NA	NA	NA
WP_003816844.1|2919499_2920345_-	PHP domain-containing protein	NA	NA	NA	NA	NA
WP_019248398.1|2920414_2921383_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_023995083.1|2921382_2922246_-	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
WP_010930196.1|2925078_2929005_-	inverse autotransporter beta-barrel domain-containing protein	NA	NA	NA	NA	NA
WP_010930194.1|2929740_2932971_-	autotransporter SphB3	NA	NA	NA	NA	NA
WP_010928340.1|2933252_2934080_-	TatD family hydrolase	NA	NA	NA	NA	NA
WP_003812422.1|2934113_2934809_-	lipoprotein-releasing ABC transporter ATP-binding protein LolD	NA	G9BWD6	Planktothrix_phage	38.6	7.0e-35
WP_019247537.1|2934801_2936082_-	lipoprotein-releasing ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_010930192.1|2936091_2937069_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930191.1|2937050_2938751_+	single-stranded-DNA-specific exonuclease RecJ	NA	A7KV88	Bacillus_phage	28.3	1.3e-50
WP_010926448.1|2938853_2939957_+	peptide chain release factor 2	NA	NA	NA	NA	NA
WP_010926447.1|2939987_2940743_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930190.1|2940749_2942270_+|tRNA	lysine--tRNA ligase	tRNA	A0A1V0SAC0	Catovirus	36.0	1.2e-82
WP_010930189.1|2942312_2942615_+	membrane protein	NA	NA	NA	NA	NA
WP_003812436.1|2942611_2943244_-	TetR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930188.1|2943322_2945188_-	long-chain fatty acid--CoA ligase	NA	A0A1V0SBX8	Catovirus	23.3	9.3e-50
WP_020699602.1|2945184_2945979_-	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	23.3	1.2e-11
WP_010930186.1|2946007_2947123_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930185.1|2948027_2948906_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010930184.1|2948905_2949730_-	ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	22.7	1.0e-08
WP_010929591.1|2949897_2950848_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930183.1|2951060_2953910_+	EAL domain-containing protein	NA	NA	NA	NA	NA
WP_010930182.1|2953891_2954620_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_019248549.1|2954760_2956224_-	YdiU family protein	NA	A0A075BSJ0	Microcystis_phage	32.5	1.7e-43
WP_010930180.1|2956220_2956592_-	DUF2069 domain-containing protein	NA	NA	NA	NA	NA
WP_003812701.1|2956609_2957923_+	YihY family inner membrane protein	NA	NA	NA	NA	NA
WP_003812703.1|2957959_2958418_+	CBS domain-containing protein	NA	NA	NA	NA	NA
WP_155120815.1|2958372_2958513_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|2958530_2959481_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930178.1|2959477_2960491_-|tRNA	tRNA dihydrouridine(20/20a) synthase DusA	tRNA	NA	NA	NA	NA
WP_003812707.1|2960630_2961617_+	homoserine kinase	NA	NA	NA	NA	NA
WP_161633091.1|2961975_2962683_-	DUF192 domain-containing protein	NA	NA	NA	NA	NA
WP_010929591.1|2963263_2964214_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003809618.1|2964365_2964968_-	YhbY family RNA-binding protein	NA	NA	NA	NA	NA
WP_010930175.1|2964986_2965619_+	RlmE family RNA methyltransferase	NA	NA	NA	NA	NA
WP_162096758.1|2965663_2965915_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930174.1|2965856_2967743_+|protease	ATP-dependent zinc metalloprotease FtsH	protease	M4QMW8	Micromonas_pusilla_virus	41.5	1.4e-109
>prophage 23
NZ_CP010844	Bordetella pertussis strain H559 chromosome, complete genome	4106490	2979468	3029187	4106490	tRNA,transposase,holin	uncultured_Mediterranean_phage(60.0%)	42	NA	NA
WP_005013747.1|2979468_2980419_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003809441.1|2980445_2980910_-	barstar family protein	NA	NA	NA	NA	NA
WP_014486065.1|2982116_2984405_-	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
WP_010930165.1|2984521_2985394_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930164.1|2985436_2986591_+	pyridoxal phosphate-dependent aminotransferase	NA	NA	NA	NA	NA
WP_010930163.1|2986625_2987456_-	lytic transglycosylase domain-containing protein	NA	NA	NA	NA	NA
WP_023853525.1|2987539_2989084_+	4-hydroxy-3-polyprenylbenzoate decarboxylase	NA	NA	NA	NA	NA
WP_010930161.1|2989126_2989486_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003819794.1|2989487_2989901_-|holin	phage holin family protein	holin	NA	NA	NA	NA
WP_003809432.1|2989941_2990259_-	DUF883 domain-containing protein	NA	NA	NA	NA	NA
WP_003809431.1|2990343_2991060_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005015810.1|2995416_2996367_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_161633096.1|2996346_2996601_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023853536.1|2996939_2997956_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010930157.1|2998291_2998933_-	uracil phosphoribosyltransferase	NA	NA	NA	NA	NA
WP_003809423.1|2999023_3000460_-	D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase	NA	NA	NA	NA	NA
WP_023853534.1|3000617_3001691_+|tRNA	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	tRNA	NA	NA	NA	NA
WP_010930155.1|3001687_3002824_+|tRNA	tRNA guanosine(34) transglycosylase Tgt	tRNA	A0A1B1IVQ4	uncultured_Mediterranean_phage	44.4	1.9e-85
WP_003809416.1|3002968_3003313_+	preprotein translocase subunit YajC	NA	A0A1B1IVR5	uncultured_Mediterranean_phage	40.4	1.0e-10
WP_010930154.1|3003379_3005260_+	protein translocase subunit SecD	NA	NA	NA	NA	NA
WP_003809411.1|3005309_3006245_+	protein translocase subunit SecF	NA	A0A1B1IVP7	uncultured_Mediterranean_phage	35.5	3.0e-41
WP_010931363.1|3006577_3007594_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_015041211.1|3008531_3009959_+|tRNA	tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB	tRNA	NA	NA	NA	NA
WP_010930151.1|3009955_3010978_+	PhoH family protein	NA	A0A0S0MVD6	Pseudomonas_phage	45.4	8.7e-50
WP_003809396.1|3010967_3011441_+	rRNA maturation RNase YbeY	NA	NA	NA	NA	NA
WP_010930149.1|3011581_3012469_+	CBS domain-containing protein	NA	NA	NA	NA	NA
WP_014486064.1|3012465_3014109_+	apolipoprotein N-acyltransferase	NA	NA	NA	NA	NA
WP_010930148.1|3014105_3015155_-	aldo/keto reductase	NA	NA	NA	NA	NA
WP_010931363.1|3015943_3016960_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003817162.1|3017059_3017692_-	protein phosphatase CheZ	NA	NA	NA	NA	NA
WP_003811911.1|3017700_3018090_-	chemotaxis response regulator CheY	NA	Q56AR1	Bacillus_thuringiensis_phage	33.3	5.7e-10
WP_010930146.1|3018142_3019195_-	chemotaxis response regulator protein-glutamate methylesterase	NA	NA	NA	NA	NA
WP_023995045.1|3020058_3020823_-	Tar ligand binding domain-containing protein	NA	NA	NA	NA	NA
WP_003811919.1|3020896_3021397_-	chemotaxis protein CheW	NA	NA	NA	NA	NA
WP_010930144.1|3021411_3023469_-	chemotaxis protein CheA	NA	NA	NA	NA	NA
WP_019247393.1|3023495_3023789_-	response regulator	NA	NA	NA	NA	NA
WP_003817154.1|3023890_3024838_-	flagellar motor protein MotB	NA	NA	NA	NA	NA
WP_003811927.1|3024850_3025726_-	flagellar motor stator protein MotA	NA	NA	NA	NA	NA
WP_003811929.1|3025846_3026407_-	flagellar transcriptional regulator FlhC	NA	NA	NA	NA	NA
WP_010930143.1|3026441_3026765_-	flagellar transcriptional regulator FlhD	NA	NA	NA	NA	NA
WP_003811933.1|3027200_3027938_+	RNA polymerase sigma factor FliA	NA	NA	NA	NA	NA
WP_005012067.1|3028236_3029187_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 24
NZ_CP010844	Bordetella pertussis strain H559 chromosome, complete genome	4106490	3037397	3099551	4106490	transposase	Erysipelothrix_phage(20.0%)	46	NA	NA
WP_023853531.1|3037397_3038531_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930137.1|3038634_3039276_+	glutathione transferase	NA	NA	NA	NA	NA
WP_010930136.1|3039430_3041779_+	DUF3141 domain-containing protein	NA	NA	NA	NA	NA
WP_003809454.1|3041775_3042714_+	phosphate acetyltransferase	NA	NA	NA	NA	NA
WP_010930135.1|3042739_3043930_+	acetate kinase	NA	NA	NA	NA	NA
WP_010930134.1|3043926_3044700_+	enoyl-ACP reductase FabI	NA	NA	NA	NA	NA
WP_010930133.1|3044729_3045923_-	phosphoglycerate kinase	NA	NA	NA	NA	NA
WP_010930132.1|3046040_3047051_-	type I glyceraldehyde-3-phosphate dehydrogenase	NA	NA	NA	NA	NA
WP_010930131.1|3047068_3049105_-	transketolase	NA	NA	NA	NA	NA
WP_010930130.1|3049299_3050040_+	16S rRNA (uracil(1498)-N(3))-methyltransferase	NA	NA	NA	NA	NA
WP_010929969.1|3050138_3051089_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929584.1|3051187_3052138_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003817151.1|3052180_3053356_+	FliC/FljB family flagellin	NA	NA	NA	NA	NA
WP_010930129.1|3053577_3055368_-	dihydrolipoyl dehydrogenase	NA	A0A2K5B2C5	Erysipelothrix_phage	25.2	2.4e-39
WP_193394813.1|3055380_3056649_-	dihydrolipoyllysine-residue acetyltransferase	NA	NA	NA	NA	NA
WP_010930127.1|3057053_3059759_-	pyruvate dehydrogenase (acetyl-transferring), homodimeric type	NA	NA	NA	NA	NA
WP_003817147.1|3060051_3061806_+	PAS domain S-box protein	NA	NA	NA	NA	NA
WP_010930126.1|3061802_3062429_+	response regulator transcription factor	NA	NA	NA	NA	NA
WP_003811948.1|3062425_3063277_+	bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD	NA	A0A249XZQ2	Enterococcus_phage	39.8	2.1e-33
WP_019248379.1|3063352_3065467_+	M3 family metallopeptidase	NA	NA	NA	NA	NA
WP_010930124.1|3065653_3066268_+	SCO family protein	NA	NA	NA	NA	NA
WP_010930123.1|3066413_3066665_+	GlsB/YeaQ/YmgE family stress response membrane protein	NA	NA	NA	NA	NA
WP_014486063.1|3066734_3068117_-	efflux transporter outer membrane subunit	NA	NA	NA	NA	NA
WP_010930121.1|3068113_3071293_-	efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_029443805.1|3072100_3073018_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930119.1|3073069_3073801_-	rRNA pseudouridine synthase	NA	NA	NA	NA	NA
WP_010926548.1|3073860_3074433_+	chorismate lyase	NA	NA	NA	NA	NA
WP_010929632.1|3075941_3076958_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010930118.1|3077095_3078145_-	NADP(H)-dependent aldo-keto reductase	NA	NA	NA	NA	NA
WP_005012067.1|3078249_3079200_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003813314.1|3079295_3080021_-	CoA pyrophosphatase	NA	NA	NA	NA	NA
WP_003813315.1|3080231_3080612_-	50S ribosomal protein L19	NA	NA	NA	NA	NA
WP_014905652.1|3080917_3081790_+	EamA family transporter	NA	NA	NA	NA	NA
WP_023852686.1|3081797_3082178_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023852693.1|3082331_3083606_-	PA0069 family radical SAM protein	NA	NA	NA	NA	NA
WP_010930113.1|3085093_3086002_-	sulfate adenylyltransferase subunit CysD	NA	NA	NA	NA	NA
WP_010930112.1|3086799_3087864_-	sulfate ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	30.3	3.8e-24
WP_170954292.1|3089700_3090702_-	sulfate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003813333.1|3090924_3091566_-	peroxiredoxin	NA	NA	NA	NA	NA
WP_003821527.1|3091648_3093475_-	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_010930111.1|3093718_3094648_-	electron transfer flavoprotein subunit alpha	NA	NA	NA	NA	NA
WP_010930110.1|3094647_3095397_-	electron transfer flavoprotein subunit beta/FixA family protein	NA	NA	NA	NA	NA
WP_003821521.1|3095468_3096383_-	histone deacetylase family protein	NA	A0A2K9KZC4	Tupanvirus	34.7	9.8e-45
WP_010930108.1|3096402_3097548_+	lytic murein transglycosylase B	NA	NA	NA	NA	NA
WP_014486062.1|3097608_3098520_-	cysteine synthase CysM	NA	A0A1X9I5K7	Streptococcus_phage	38.8	8.0e-47
WP_005012067.1|3098600_3099551_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 25
NZ_CP010844	Bordetella pertussis strain H559 chromosome, complete genome	4106490	3118973	3174103	4106490	transposase	Bacillus_phage(28.57%)	48	NA	NA
WP_005012808.1|3118973_3119924_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_004566317.1|3120053_3120446_+	type II toxin-antitoxin system HicB family antitoxin	NA	A0A0R6PJ17	Moraxella_phage	45.0	4.8e-25
WP_003821497.1|3120722_3121634_-	LysR family transcriptional regulator	NA	Q6JIH3	Burkholderia_virus	27.6	4.4e-05
WP_010930088.1|3121758_3122733_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_005012067.1|3122729_3123680_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003810865.1|3123778_3124864_-	DNA polymerase IV	NA	NA	NA	NA	NA
WP_010930072.1|3124961_3125372_+	PaaI family thioesterase	NA	NA	NA	NA	NA
WP_003810859.1|3125987_3127901_+	S9 family peptidase	NA	NA	NA	NA	NA
WP_010930071.1|3128036_3130649_+	PBP1A family penicillin-binding protein	NA	NA	NA	NA	NA
WP_019248496.1|3130650_3131385_-	metallophosphoesterase	NA	A0A2H4J0P0	uncultured_Caudovirales_phage	49.2	1.9e-62
WP_003810851.1|3131548_3132730_+	PepSY domain-containing protein	NA	NA	NA	NA	NA
WP_003810850.1|3132726_3132939_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930069.1|3132935_3133916_-	aldo/keto reductase	NA	NA	NA	NA	NA
WP_010930068.1|3133961_3134789_-	aldo/keto reductase	NA	A0A2H4PQR8	Staphylococcus_phage	47.4	1.7e-67
WP_023852913.1|3134938_3136753_+	ABC transporter ATP-binding protein/permease	NA	W8CYL7	Bacillus_phage	27.9	5.7e-44
WP_003810840.1|3136807_3137191_+	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA	NA
WP_010930066.1|3137187_3138138_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003810839.1|3138250_3138502_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003810835.1|3139007_3140126_-	mannose-6-phosphate isomerase	NA	NA	NA	NA	NA
WP_003810832.1|3140245_3140458_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930064.1|3140617_3140839_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|3140891_3141842_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930062.1|3143018_3144389_-	acetyl-CoA carboxylase biotin carboxylase subunit	NA	NA	NA	NA	NA
WP_010930061.1|3144421_3145213_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930060.1|3145225_3146281_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_019247557.1|3146306_3147182_-	amidohydrolase	NA	NA	NA	NA	NA
WP_023852826.1|3147287_3147536_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003819989.1|3147570_3149025_-	carboxylase	NA	NA	NA	NA	NA
WP_004568140.1|3149021_3149543_-	acetyl-CoA carboxylase biotin carboxyl carrier protein	NA	NA	NA	NA	NA
WP_010930057.1|3149571_3150924_-	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_029444137.1|3151147_3154036_-	HD domain-containing protein	NA	NA	NA	NA	NA
WP_010930056.1|3156180_3157482_+	phospholipase A	NA	NA	NA	NA	NA
WP_010930055.1|3157496_3158213_-	flagellar brake protein	NA	NA	NA	NA	NA
WP_010930054.1|3158494_3159175_+	DUF3313 domain-containing protein	NA	NA	NA	NA	NA
WP_003809770.1|3159186_3159354_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023852837.1|3159462_3159609_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930052.1|3159702_3160362_-	thiopurine S-methyltransferase	NA	NA	NA	NA	NA
WP_010930051.1|3160760_3162593_+	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	26.4	1.3e-27
WP_005012067.1|3162589_3163540_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814007.1|3164703_3166419_+	acetolactate synthase 3 catalytic subunit	NA	A0A0P0CDR3	Ostreococcus_lucimarinus_virus	30.3	3.1e-60
WP_003814006.1|3166429_3166921_+	acetolactate synthase small subunit	NA	NA	NA	NA	NA
WP_010930015.1|3166993_3168010_+	ketol-acid reductoisomerase	NA	NA	NA	NA	NA
WP_003814004.1|3168177_3168957_+	CDP-diacylglycerol--serine O-phosphatidyltransferase	NA	NA	NA	NA	NA
WP_003814003.1|3168975_3169503_-	lipoprotein	NA	NA	NA	NA	NA
WP_003814002.1|3169796_3170066_+	30S ribosomal protein S15	NA	NA	NA	NA	NA
WP_003821234.1|3170156_3172316_+	polyribonucleotide nucleotidyltransferase	NA	NA	NA	NA	NA
WP_003814000.1|3172436_3173156_+	lipoprotein	NA	NA	NA	NA	NA
WP_005013747.1|3173152_3174103_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 26
NZ_CP010844	Bordetella pertussis strain H559 chromosome, complete genome	4106490	3255163	3328325	4106490	transposase	Klosneuvirus(16.67%)	57	NA	NA
WP_041337087.1|3255163_3256114_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003813068.1|3256110_3257130_-	class 1 fructose-bisphosphatase	NA	A0A1V0SKX4	Klosneuvirus	35.7	1.5e-49
WP_010930049.1|3257139_3259848_-	aminopeptidase N	NA	A0A0P0IY26	Acinetobacter_phage	24.0	2.8e-15
WP_010930050.1|3259995_3260652_+	DUF4136 domain-containing protein	NA	NA	NA	NA	NA
WP_005013747.1|3260750_3261701_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023998705.1|3261848_3262742_+	mechanosensitive ion channel family protein	NA	NA	NA	NA	NA
WP_010930013.1|3262941_3264636_+	thiamine pyrophosphate-binding protein	NA	NA	NA	NA	NA
WP_010930012.1|3264670_3265597_+	VOC family protein	NA	NA	NA	NA	NA
WP_010930011.1|3265665_3266763_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003818996.1|3266781_3267645_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	38.9	9.6e-34
WP_010930010.1|3267656_3268439_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_004566042.1|3268435_3269554_+	DUF2817 domain-containing protein	NA	NA	NA	NA	NA
WP_010930009.1|3269550_3271083_+	acyl--CoA ligase	NA	NA	NA	NA	NA
WP_003818991.1|3271123_3272131_+	zinc-binding dehydrogenase	NA	NA	NA	NA	NA
WP_023999677.1|3272275_3272998_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930007.1|3273013_3274036_-	autotransporter outer membrane beta-barrel domain-containing protein	NA	NA	NA	NA	NA
WP_010930006.1|3274352_3275087_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930005.1|3275171_3276917_+	acetolactate synthase	NA	NA	NA	NA	NA
WP_010930004.1|3276913_3277666_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930003.1|3277710_3278667_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003818983.1|3278755_3279322_+	membrane protein	NA	NA	NA	NA	NA
WP_010930002.1|3279329_3280190_-	D-amino acid aminotransferase	NA	NA	NA	NA	NA
WP_020699739.1|3280219_3280948_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	42.4	3.4e-32
WP_003807497.1|3280979_3281663_-	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_010930000.1|3282500_3283415_-	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929999.1|3283479_3284388_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929998.1|3284478_3285903_-	TolC family protein	NA	NA	NA	NA	NA
WP_010929997.1|3285904_3287227_-	cyclolysin T1SS periplasmic adaptor subunit CyaD	NA	NA	NA	NA	NA
WP_010929996.1|3287223_3289362_-	cyclolysin T1SS permease/ATPase CyaB	NA	W8CYL7	Bacillus_phage	29.2	2.7e-45
WP_010929995.1|3289439_3294560_-	bifunctional adenylate cyclase toxin/hemolysin CyaA	NA	NA	NA	NA	NA
WP_153302771.1|3294660_3294969_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929994.1|3295038_3295596_+	cyclolysin-activating lysine-acyltransferase	NA	NA	NA	NA	NA
WP_010929993.1|3295611_3297093_-	NAD-dependent succinate-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
WP_010929992.1|3299263_3300601_-	FAD-binding oxidoreductase	NA	NA	NA	NA	NA
WP_010929991.1|3300635_3302633_-	hydantoinase B/oxoprolinase family protein	NA	NA	NA	NA	NA
WP_010929990.1|3302650_3304699_-	hydantoinase/oxoprolinase family protein	NA	NA	NA	NA	NA
WP_010929989.1|3304829_3305696_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929988.1|3305964_3306930_-	octaprenyl diphosphate synthase	NA	NA	NA	NA	NA
WP_010929987.1|3307044_3308193_-	fumarylacetoacetate hydrolase family protein	NA	NA	NA	NA	NA
WP_003807462.1|3308617_3308929_+	50S ribosomal protein L21	NA	NA	NA	NA	NA
WP_003807460.1|3308962_3309223_+	50S ribosomal protein L27	NA	NA	NA	NA	NA
WP_003807459.1|3309372_3310506_+	GTPase ObgE	NA	NA	NA	NA	NA
WP_003807457.1|3310576_3311713_+	glutamate 5-kinase	NA	A0A1X9I5D0	Streptococcus_phage	44.8	5.8e-63
WP_010925762.1|3311878_3312673_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_003807452.1|3312735_3313179_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_005012808.1|3313294_3314245_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929985.1|3314346_3314775_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010929984.1|3314847_3317043_+	DUF1156 domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|3317264_3318215_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023852739.1|3318174_3318699_-	sigma-70 family RNA polymerase sigma factor	NA	NA	NA	NA	NA
WP_003814467.1|3318830_3319802_+	FecR family protein	NA	NA	NA	NA	NA
WP_010929983.1|3319921_3322366_+	TonB-dependent siderophore receptor	NA	NA	NA	NA	NA
WP_010929982.1|3322381_3322972_-	polyisoprenoid-binding protein	NA	NA	NA	NA	NA
WP_010929591.1|3323215_3324166_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814462.1|3324323_3325589_-	saccharopine dehydrogenase family protein	NA	NA	NA	NA	NA
WP_003814461.1|3325622_3326720_-	carboxynorspermidine decarboxylase	NA	NA	NA	NA	NA
WP_005013747.1|3327374_3328325_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 27
NZ_CP010844	Bordetella pertussis strain H559 chromosome, complete genome	4106490	3339612	3439725	4106490	tRNA,tail,terminase,transposase,protease	uncultured_Caudovirales_phage(14.29%)	108	NA	NA
WP_005012067.1|3339612_3340563_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814437.1|3341294_3341672_+	4a-hydroxytetrahydrobiopterin dehydratase	NA	NA	NA	NA	NA
WP_003814436.1|3341656_3342358_-	membrane protein	NA	NA	NA	NA	NA
WP_010931409.1|3342501_3343194_-	nucleotidyltransferase family protein	NA	NA	NA	NA	NA
WP_010931410.1|3343193_3344297_-	phosphotransferase	NA	NA	NA	NA	NA
WP_010931411.1|3344406_3346779_+	LPS-assembly protein LptD	NA	NA	NA	NA	NA
WP_010931412.1|3346775_3348335_+	chaperone SurA	NA	NA	NA	NA	NA
WP_010931413.1|3348359_3349157_+	16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA	NA	NA	NA	NA	NA
WP_010931414.1|3349188_3350334_-	glycerate kinase	NA	W6LM47	Streptococcus_phage	42.2	1.7e-41
WP_003814419.1|3350438_3351881_+	pyruvate kinase	NA	NA	NA	NA	NA
WP_010929184.1|3351883_3353113_-	spore maturation protein	NA	NA	NA	NA	NA
WP_005012808.1|3355250_3356201_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247922.1|3357330_3357888_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019247923.1|3357863_3358214_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003814657.1|3358382_3359177_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.6	2.4e-15
WP_010931416.1|3359173_3360223_-	iron ABC transporter permease	NA	NA	NA	NA	NA
WP_003814652.1|3360222_3360912_-	tol-pal system protein YbgF	NA	NA	NA	NA	NA
WP_003814650.1|3360998_3361496_-	peptidoglycan-associated lipoprotein Pal	NA	NA	NA	NA	NA
WP_010931417.1|3361527_3362844_-	Tol-Pal system protein TolB	NA	NA	NA	NA	NA
WP_010931418.1|3362860_3363835_-	cell envelope integrity protein TolA	NA	NA	NA	NA	NA
WP_003814643.1|3363871_3364330_-	protein TolR	NA	NA	NA	NA	NA
WP_003814641.1|3364329_3365010_-	protein TolQ	NA	NA	NA	NA	NA
WP_010931419.1|3365012_3365441_-	tol-pal system-associated acyl-CoA thioesterase	NA	NA	NA	NA	NA
WP_003814636.1|3365493_3367224_-|tRNA	proline--tRNA ligase	tRNA	A0A2K9L3R9	Tupanvirus	29.4	4.6e-11
WP_003814635.1|3367289_3367862_+	RNA pyrophosphohydrolase	NA	NA	NA	NA	NA
WP_010931420.1|3367842_3368529_+	response regulator	NA	NA	NA	NA	NA
WP_010931421.1|3368884_3369556_+	SOS response-associated peptidase	NA	Q5QF62	Pseudomonas_virus	39.9	4.7e-36
WP_010931422.1|3369884_3370106_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010926433.1|3370105_3370387_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931423.1|3370383_3370899_-	DUF2514 family protein	NA	NA	NA	NA	NA
WP_010931424.1|3370898_3371450_-	lysozyme	NA	NA	NA	NA	NA
WP_010931425.1|3371428_3371671_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931426.1|3371675_3372488_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010926428.1|3372487_3372751_-	hypothetical protein	NA	NA	NA	NA	NA
WP_124740660.1|3372791_3372989_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931428.1|3372969_3373386_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931429.1|3373390_3377347_-	DUF1983 domain-containing protein	NA	A0A0B5A1N2	Achromobacter_phage	40.8	3.9e-215
WP_010931430.1|3377339_3377729_-	C40 family peptidase	NA	A0A0G3EYJ9	Achromobacter_phage	50.0	3.0e-35
WP_010931431.1|3377725_3378259_-	DUF1833 family protein	NA	A5A3Q9	Burkholderia_phage	46.9	1.1e-40
WP_010931432.1|3378326_3378686_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931433.1|3378695_3381308_-|tail	phage tail tape measure protein	tail	A0A2H4J107	uncultured_Caudovirales_phage	38.6	4.9e-105
WP_010931434.1|3381333_3381624_-	DUF1799 domain-containing protein	NA	A0A2H4JBP7	uncultured_Caudovirales_phage	45.2	3.7e-14
WP_003813412.1|3381641_3381971_-|tail	phage tail assembly chaperone	tail	A0A2H4J121	uncultured_Caudovirales_phage	44.0	2.9e-15
WP_010931435.1|3381980_3382499_-|tail	phage tail protein	tail	A0A1S5R1H0	Pseudomonas_phage	38.3	5.4e-24
WP_010931436.1|3382753_3383254_-	HNH endonuclease	NA	A0A1I9SEX5	Klebsiella_phage	45.1	4.4e-31
WP_010931437.1|3383261_3383684_-	DUF4128 domain-containing protein	NA	NA	NA	NA	NA
WP_010931438.1|3383680_3384079_-	hypothetical protein	NA	I6PCW1	Cronobacter_phage	38.0	4.2e-16
WP_010931439.1|3384075_3384471_-	hypothetical protein	NA	A0A2D2W284	Stenotrophomonas_phage	35.0	7.8e-07
WP_010931440.1|3384470_3384671_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247789.1|3384672_3385155_-	hypothetical protein	NA	A0A2H4JE38	uncultured_Caudovirales_phage	37.1	1.8e-13
WP_010931442.1|3385217_3385469_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012808.1|3386143_3387094_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931443.1|3387522_3388125_-	hypothetical protein	NA	R9TF81	Synechococcus_phage	43.6	7.9e-27
WP_010931444.1|3388247_3388490_-	hypothetical protein	NA	A0A0H5AUE5	Pseudomonas_phage	53.2	5.6e-16
WP_010931445.1|3388495_3389551_-	hypothetical protein	NA	A0A0H5BBX3	Pseudomonas_phage	50.6	2.6e-97
WP_010931446.1|3389579_3390998_-	DUF4055 domain-containing protein	NA	R9TF43	Synechococcus_phage	42.1	2.2e-99
WP_010931447.1|3391000_3392278_-|terminase	terminase large subunit	terminase	A0A1B1P9C9	Acinetobacter_phage	64.7	2.4e-150
WP_019247942.1|3392264_3392750_-|transposase	transposase	transposase	C7U0W1	Enterobacteria_phage	61.5	7.3e-39
WP_005012067.1|3393389_3394340_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023853183.1|3394357_3394579_+	hypothetical protein	NA	NA	NA	NA	NA
WP_161633094.1|3394596_3395286_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023853179.1|3395278_3395530_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010931451.1|3396084_3396696_+	S24 family peptidase	NA	NA	NA	NA	NA
WP_019247378.1|3396767_3396974_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|3397225_3398176_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019248926.1|3398274_3399348_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931475.1|3399515_3400310_+	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010925795.1|3400349_3400874_-	DUF934 domain-containing protein	NA	NA	NA	NA	NA
WP_010931474.1|3400866_3402609_-	nitrite/sulfite reductase	NA	NA	NA	NA	NA
WP_010931473.1|3402818_3403577_-	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	24.4	4.4e-14
WP_010931472.1|3403579_3404287_-	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	25.4	8.2e-07
WP_010931471.1|3404303_3405185_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_019247734.1|3405195_3405954_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_019248554.1|3405922_3406678_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931468.1|3406747_3408166_+	amidase	NA	NA	NA	NA	NA
WP_003819076.1|3408187_3408838_-	carbonic anhydrase	NA	NA	NA	NA	NA
WP_033446132.1|3408971_3409307_-	ASCH domain-containing protein	NA	NA	NA	NA	NA
WP_010930800.1|3409395_3410346_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931467.1|3410422_3412243_+	DNA helicase RecQ	NA	L7RCS0	Acanthamoeba_polyphaga_moumouvirus	35.3	3.1e-74
WP_010931466.1|3412247_3413321_-	Holliday junction branch migration DNA helicase RuvB	NA	A0A127AWE7	Bacillus_phage	25.7	2.3e-08
WP_003814230.1|3413443_3414412_+	threo-3-hydroxy-L-aspartate ammonia-lyase	NA	NA	NA	NA	NA
WP_010927008.1|3414485_3415397_+	complex I NDUFA9 subunit family protein	NA	NA	NA	NA	NA
WP_003814226.1|3415415_3415988_-	Holliday junction branch migration protein RuvA	NA	NA	NA	NA	NA
WP_010931465.1|3416068_3416617_-	crossover junction endodeoxyribonuclease RuvC	NA	NA	NA	NA	NA
WP_010931464.1|3416616_3418206_-	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase	NA	Q58MG4	Prochlorococcus_phage	47.2	8.7e-65
WP_003814221.1|3418275_3418515_-	DNA-binding protein	NA	NA	NA	NA	NA
WP_023995141.1|3418555_3419581_-|tRNA	tRNA dihydrouridine synthase DusB	tRNA	NA	NA	NA	NA
WP_003814217.1|3419646_3420828_-	UbiH/UbiF/VisC/COQ6 family ubiquinone biosynthesis hydroxylase	NA	NA	NA	NA	NA
WP_010931463.1|3420924_3421377_+	membrane protein	NA	NA	NA	NA	NA
WP_010931462.1|3421386_3422727_-	aminopeptidase P N-terminal domain-containing protein	NA	NA	NA	NA	NA
WP_010931461.1|3423043_3424081_+	sodium:calcium antiporter	NA	NA	NA	NA	NA
WP_003814209.1|3424462_3424822_+	hypothetical protein	NA	NA	NA	NA	NA
WP_041166340.1|3424905_3425847_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_076879617.1|3425921_3426872_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814206.1|3427165_3428260_+	porin	NA	NA	NA	NA	NA
WP_003814205.1|3428341_3429223_+	cytochrome c oxidase assembly protein	NA	NA	NA	NA	NA
WP_003814203.1|3429244_3430084_-	UTP--glucose-1-phosphate uridylyltransferase GalU	NA	A0A127AW70	Bacillus_phage	48.9	1.1e-66
WP_010931459.1|3430159_3431677_+|protease	M48 family metalloprotease	protease	NA	NA	NA	NA
WP_010931458.1|3431773_3432874_-	alpha/beta fold hydrolase	NA	NA	NA	NA	NA
WP_010931457.1|3432890_3433313_-	nuclear transport factor 2 family protein	NA	NA	NA	NA	NA
WP_003814195.1|3433335_3433548_-	zinc-finger domain-containing protein	NA	NA	NA	NA	NA
WP_010931456.1|3433594_3434515_-	branched-chain amino acid transaminase	NA	NA	NA	NA	NA
WP_010931455.1|3434697_3435447_+	AzlC family ABC transporter permease	NA	NA	NA	NA	NA
WP_003814188.1|3435449_3435779_+	AzlD domain-containing protein	NA	NA	NA	NA	NA
WP_010931454.1|3435985_3437419_+	DEAD/DEAH box helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	34.4	1.5e-52
WP_003814185.1|3437430_3437814_-	thioredoxin family protein	NA	NA	NA	NA	NA
WP_010931453.1|3437875_3438676_+	EI24 domain-containing protein	NA	NA	NA	NA	NA
WP_005015810.1|3438774_3439725_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 28
NZ_CP010844	Bordetella pertussis strain H559 chromosome, complete genome	4106490	3600394	3655368	4106490	transposase	Lake_Baikal_phage(20.0%)	44	NA	NA
WP_005012067.1|3600394_3601345_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929827.1|3601461_3602529_+	linear amide C-N hydrolase	NA	NA	NA	NA	NA
WP_019247670.1|3602604_3605733_-	Rne/Rng family ribonuclease	NA	NA	NA	NA	NA
WP_023853155.1|3606240_3607206_+	RluA family pseudouridine synthase	NA	NA	NA	NA	NA
WP_010929830.1|3607208_3607880_+	HAD family hydrolase	NA	NA	NA	NA	NA
WP_010929831.1|3608036_3608996_+	protein-methionine-sulfoxide reductase catalytic subunit MsrP	NA	NA	NA	NA	NA
WP_003821340.1|3609003_3609666_+	protein-methionine-sulfoxide reductase heme-binding subunit MsrQ	NA	NA	NA	NA	NA
WP_005013747.1|3609662_3610613_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929806.1|3610734_3611988_+	CoA transferase	NA	NA	NA	NA	NA
WP_010929805.1|3611965_3612928_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929804.1|3613059_3613554_+	MaoC family dehydratase	NA	NA	NA	NA	NA
WP_010929803.1|3613553_3614786_+	CoA transferase	NA	NA	NA	NA	NA
WP_019247316.1|3615531_3615813_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929802.1|3615799_3616786_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929801.1|3616929_3617334_+	RidA family protein	NA	NA	NA	NA	NA
WP_010929800.1|3617475_3620862_+	molybdopterin-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010929799.1|3620892_3622356_+	short-chain fatty acid transporter	NA	NA	NA	NA	NA
WP_019248869.1|3622376_3623993_+	L-glutamate gamma-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
WP_010929797.1|3624078_3624738_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929796.1|3624767_3625208_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929795.1|3625718_3625922_+	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	58.2	5.8e-14
WP_010929794.1|3626097_3627003_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929577.1|3627101_3628052_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|3628150_3629101_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814674.1|3630882_3632076_-	acetyl-CoA C-acyltransferase	NA	NA	NA	NA	NA
WP_010929793.1|3632141_3633170_-	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_019247419.1|3633196_3634369_-	acyl-CoA dehydrogenase family protein	NA	NA	NA	NA	NA
WP_003814681.1|3634494_3635472_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814685.1|3635482_3636454_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929791.1|3636520_3637306_-	crotonase/enoyl-CoA hydratase family protein	NA	NA	NA	NA	NA
WP_003814691.1|3637298_3638531_-	CoA transferase	NA	NA	NA	NA	NA
WP_003814694.1|3638726_3639482_-	TerC family protein	NA	A0A0R6PEZ3	Moraxella_phage	40.8	2.9e-42
WP_010929789.1|3639592_3640111_+	MgtC/SapB family protein	NA	G3MA03	Bacillus_virus	38.9	2.1e-12
WP_010929788.1|3641899_3643300_+	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
WP_003820700.1|3643399_3643744_+	TIGR01244 family phosphatase	NA	NA	NA	NA	NA
WP_003814701.1|3643832_3644303_+	universal stress protein	NA	NA	NA	NA	NA
WP_019247421.1|3644713_3645112_+	GTP-binding protein	NA	E4ZFJ7	Streptococcus_phage	44.3	9.0e-19
WP_010929577.1|3645243_3646194_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814730.1|3648638_3649373_+	DNA polymerase III subunit epsilon	NA	A0A1X9SH08	Bradyrhizobium_phage	43.8	1.4e-41
WP_003814728.1|3649782_3649962_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003814726.1|3650152_3651466_+	short-chain fatty acid transporter	NA	NA	NA	NA	NA
WP_010929786.1|3651481_3652993_-	TAXI family TRAP transporter solute-binding subunit	NA	NA	NA	NA	NA
WP_010929785.1|3652989_3654195_-	sodium/glutamate symporter	NA	NA	NA	NA	NA
WP_022997984.1|3654390_3655368_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 29
NZ_CP010844	Bordetella pertussis strain H559 chromosome, complete genome	4106490	3745181	3799376	4106490	transposase,protease	Paramecium_bursaria_Chlorella_virus(14.29%)	54	NA	NA
WP_005013747.1|3745181_3746132_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814960.1|3746254_3746983_+	monofunctional biosynthetic peptidoglycan transglycosylase	NA	NA	NA	NA	NA
WP_010929739.1|3747079_3748258_+	LPS export ABC transporter permease LptG	NA	NA	NA	NA	NA
WP_010929738.1|3748254_3749088_+	symmetrical bis(5'-nucleosyl)-tetraphosphatase	NA	NA	NA	NA	NA
WP_010929737.1|3749124_3749865_-	1-acyl-sn-glycerol-3-phosphate acyltransferase	NA	NA	NA	NA	NA
WP_010929736.1|3749984_3751160_-	dihydroorotase	NA	NA	NA	NA	NA
WP_003820560.1|3751156_3752110_-	aspartate carbamoyltransferase catalytic subunit	NA	A7RB08	Paramecium_bursaria_Chlorella_virus	35.8	2.5e-30
WP_010929735.1|3752123_3752525_-	Holliday junction resolvase RuvX	NA	NA	NA	NA	NA
WP_010927118.1|3752517_3753123_-	YqgE/AlgH family protein	NA	NA	NA	NA	NA
WP_003814980.1|3753210_3753375_-	rubredoxin	NA	NA	NA	NA	NA
WP_010929734.1|3753491_3754340_+	hydroxymethylpyrimidine/phosphomethylpyrimidine kinase	NA	NA	NA	NA	NA
WP_003814984.1|3754336_3754990_+	thiamine phosphate synthase	NA	NA	NA	NA	NA
WP_010929733.1|3755006_3756290_+	glutamate-1-semialdehyde 2,1-aminomutase	NA	NA	NA	NA	NA
WP_010929732.1|3756529_3758155_+	DUF342 domain-containing protein	NA	NA	NA	NA	NA
WP_003814990.1|3758248_3758650_-	RidA family protein	NA	NA	NA	NA	NA
WP_003814993.1|3758674_3759109_-	acyl-CoA thioesterase	NA	NA	NA	NA	NA
WP_003814996.1|3759110_3760760_-	AMP-binding protein	NA	A0A2H4PQU7	Staphylococcus_phage	31.2	2.6e-56
WP_010929731.1|3760800_3761970_-	acyl-CoA dehydrogenase family protein	NA	NA	NA	NA	NA
WP_010929730.1|3761972_3762836_-	enoyl-CoA hydratase family protein	NA	NA	NA	NA	NA
WP_010929729.1|3766199_3766904_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	32.2	1.1e-16
WP_003815010.1|3766897_3767692_-	ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	23.5	2.6e-09
WP_003815011.1|3767688_3768654_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003815013.1|3768657_3769578_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003815015.1|3769674_3770838_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929728.1|3771060_3771951_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003815019.1|3771954_3772458_+	MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929727.1|3772500_3773499_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930048.1|3773495_3774446_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_111735998.1|3774534_3774822_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|3775013_3775964_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_004566083.1|3776023_3776584_+	5'-3'-deoxyribonucleotidase	NA	A0A1E1EUN3	Acanthamoeba_castellanii_mimivirus	30.8	3.2e-14
WP_004566082.1|3778086_3778968_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929725.1|3779081_3780284_+	MFS transporter	NA	NA	NA	NA	NA
WP_003819105.1|3780412_3782272_-	dihydroxy-acid dehydratase	NA	NA	NA	NA	NA
WP_003819104.1|3782349_3783159_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010929724.1|3783229_3784231_+	2-isopropylmalate synthase	NA	NA	NA	NA	NA
WP_003807710.1|3784262_3785123_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010929723.1|3785322_3786327_+	alpha/beta hydrolase	NA	A0A2L2DMU8	Acanthamoeba_polyphaga_mimivirus	31.5	7.5e-30
WP_003819100.1|3786323_3787910_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003807706.1|3787918_3788845_+	glyoxylate/hydroxypyruvate reductase A	NA	NA	NA	NA	NA
WP_003807705.1|3788867_3789494_+	FMN-binding negative transcriptional regulator	NA	NA	NA	NA	NA
WP_005015810.1|3789592_3790543_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014906092.1|3790539_3791676_-	trypsin-like peptidase domain-containing protein	NA	W5SAB9	Pithovirus	31.2	1.2e-07
WP_010927226.1|3791729_3792506_+	Nif3-like dinuclear metal center hexameric protein	NA	NA	NA	NA	NA
WP_010929721.1|3792530_3792989_-	large conductance mechanosensitive channel protein MscL	NA	NA	NA	NA	NA
WP_003815815.1|3793128_3793770_+	ubiquinol-cytochrome c reductase iron-sulfur subunit	NA	NA	NA	NA	NA
WP_003815816.1|3793834_3795217_+	cytochrome bc complex cytochrome b subunit	NA	NA	NA	NA	NA
WP_019247426.1|3795236_3796091_+	cytochrome c1	NA	NA	NA	NA	NA
WP_003815819.1|3796249_3796861_+	glutathione S-transferase N-terminal domain-containing protein	NA	NA	NA	NA	NA
WP_003815821.1|3796870_3797320_+|protease	ClpXP protease specificity-enhancing factor	protease	NA	NA	NA	NA
WP_010929719.1|3797838_3797979_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929718.1|3797986_3798148_-	DUF4224 domain-containing protein	NA	NA	NA	NA	NA
WP_193394812.1|3798261_3798408_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|3798425_3799376_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 30
NZ_CP010844	Bordetella pertussis strain H559 chromosome, complete genome	4106490	3809992	3870881	4106490	tRNA,transposase,protease	uncultured_Caudovirales_phage(33.33%)	51	NA	NA
WP_010929591.1|3809992_3810943_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929711.1|3811673_3812654_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929710.1|3812667_3813792_+	CoA transferase	NA	NA	NA	NA	NA
WP_003814321.1|3813799_3815554_-	gamma-glutamyltransferase	NA	NA	NA	NA	NA
WP_010929709.1|3815660_3816560_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814324.1|3816624_3817608_-	tripartite tricarboxylate transporter substrate binding protein BugE	NA	NA	NA	NA	NA
WP_010929708.1|3817743_3818724_+	AEC family transporter	NA	NA	NA	NA	NA
WP_010929707.1|3818740_3820132_-	class II fumarate hydratase	NA	NA	NA	NA	NA
WP_010929706.1|3820283_3820820_+|tRNA	bifunctional alanine racemase/tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE	tRNA	NA	NA	NA	NA
WP_019247543.1|3820750_3822136_+	N-acetylmuramoyl-L-alanine amidase	NA	A0A2H4JCM7	uncultured_Caudovirales_phage	30.3	4.5e-17
WP_003814332.1|3822278_3822917_-	VTT domain-containing protein	NA	NA	NA	NA	NA
WP_010929705.1|3823003_3824893_+	DNA mismatch repair endonuclease MutL	NA	A0A1B2LRQ5	Wolbachia_phage	32.8	3.3e-79
WP_003814337.1|3824889_3825831_+|tRNA	tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA	tRNA	NA	NA	NA	NA
WP_003814339.1|3825936_3826986_-	phosphoribosylformylglycinamidine cyclo-ligase	NA	Q58MH8	Prochlorococcus_phage	43.6	5.6e-68
WP_010929704.1|3827238_3827940_+	DnaA regulatory inactivator Hda	NA	NA	NA	NA	NA
WP_010929703.1|3827936_3828635_+	HAD-IB family hydrolase	NA	NA	NA	NA	NA
WP_010929702.1|3828635_3829991_+	polynucleotide adenylyltransferase PcnB	NA	A0A1B1IVF3	uncultured_Mediterranean_phage	36.8	3.4e-25
WP_010929701.1|3829987_3830479_+	2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase	NA	NA	NA	NA	NA
WP_003814351.1|3830497_3831454_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003814355.1|3832864_3834967_-	TRAP transporter large permease subunit	NA	NA	NA	NA	NA
WP_003814356.1|3835137_3836181_+	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003814358.1|3836224_3836968_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814363.1|3837989_3838400_-	carboxymuconolactone decarboxylase family protein	NA	NA	NA	NA	NA
WP_010929700.1|3839349_3840147_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930742.1|3840245_3841196_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010927663.1|3841192_3842143_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|3842229_3843180_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929681.1|3843294_3844296_-	HindIII family type II restriction endonuclease	NA	NA	NA	NA	NA
WP_010929682.1|3844386_3844953_-	preprotein translocase subunit SecD	NA	NA	NA	NA	NA
WP_010929683.1|3845271_3847185_+	phosphomethylpyrimidine synthase ThiC	NA	NA	NA	NA	NA
WP_010929684.1|3847226_3848657_-	aldehyde dehydrogenase family protein	NA	NA	NA	NA	NA
WP_019247308.1|3848769_3850182_-	FAD-binding oxidoreductase	NA	NA	NA	NA	NA
WP_003818947.1|3850198_3850894_-	FadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012808.1|3851112_3852063_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929687.1|3852087_3852987_-	virginiamycin B lyase	NA	NA	NA	NA	NA
WP_010929688.1|3853141_3853690_+	N-acetyltransferase	NA	A0A2H4J136	uncultured_Caudovirales_phage	41.7	1.2e-21
WP_010929689.1|3853728_3854448_-	7-cyano-7-deazaguanine synthase QueC	NA	A0A0A0RPC6	Escherichia_phage	43.9	8.0e-50
WP_010929690.1|3854519_3857462_+	phosphoenolpyruvate carboxylase	NA	NA	NA	NA	NA
WP_033455792.1|3858055_3860851_+|protease	serine protease autotransporter SphB1	protease	NA	NA	NA	NA
WP_010929692.1|3861308_3862241_+	3-hydroxyacyl-CoA dehydrogenase family protein	NA	NA	NA	NA	NA
WP_010929693.1|3862352_3863702_+	short-chain fatty acid transporter	NA	NA	NA	NA	NA
WP_010929694.1|3863733_3864459_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010929695.1|3864509_3865361_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929696.1|3865490_3866177_+	3-oxoacid CoA-transferase subunit A	NA	NA	NA	NA	NA
WP_003819086.1|3866176_3866821_+	CoA transferase subunit B	NA	NA	NA	NA	NA
WP_003807674.1|3866877_3867153_+	muconolactone Delta-isomerase	NA	NA	NA	NA	NA
WP_003807672.1|3867178_3867475_+	YciI family protein	NA	NA	NA	NA	NA
WP_010929697.1|3867520_3868300_+	3-oxoadipate enol-lactonase	NA	NA	NA	NA	NA
WP_023853200.1|3868305_3869346_+	cyclase family protein	NA	NA	NA	NA	NA
WP_010929699.1|3869450_3869774_-	phosphate starvation-inducible protein	NA	NA	NA	NA	NA
WP_010931070.1|3869930_3870881_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 31
NZ_CP010844	Bordetella pertussis strain H559 chromosome, complete genome	4106490	4028661	4082093	4106490	transposase	Planktothrix_phage(40.0%)	46	NA	NA
WP_010931661.1|4028661_4029612_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931662.1|4029781_4031008_+	bifunctional glutamate N-acetyltransferase/amino-acid acetyltransferase ArgJ	NA	NA	NA	NA	NA
WP_010931663.1|4031207_4032074_+	ATP-binding protein	NA	NA	NA	NA	NA
WP_003815027.1|4032066_4033029_+	Nudix family hydrolase	NA	A0A221LFJ1	Barns_Ness_breadcrumb_sponge_sobemo-like_virus	53.4	1.9e-06
WP_010927663.1|4033129_4034080_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|4034178_4035129_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929577.1|4035227_4036178_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994937.1|4036174_4037668_-	efflux transporter outer membrane subunit	NA	NA	NA	NA	NA
WP_003815032.1|4037664_4040772_-	multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_010931665.1|4040768_4043837_-	MdtB/MuxB family multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_010931666.1|4043833_4045084_-	MdtA/MuxA family multidrug efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
WP_003815038.1|4045264_4046026_-	cell division protein ZapD	NA	NA	NA	NA	NA
WP_019247320.1|4046058_4046709_-	dephospho-CoA kinase	NA	NA	NA	NA	NA
WP_003820519.1|4046711_4047551_-	prepilin peptidase	NA	NA	NA	NA	NA
WP_003815047.1|4047791_4048535_+	copper resistance protein NlpE N-terminal domain-containing protein	NA	NA	NA	NA	NA
WP_003815049.1|4048617_4048965_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003815051.1|4049062_4049905_-	pantoate--beta-alanine ligase	NA	NA	NA	NA	NA
WP_003815053.1|4049949_4050837_-	segregation/condensation protein A	NA	NA	NA	NA	NA
WP_003815055.1|4050863_4051052_-	DUF3460 family protein	NA	NA	NA	NA	NA
WP_010931669.1|4051149_4052607_+	DHA2 family efflux MFS transporter permease subunit	NA	NA	NA	NA	NA
WP_010931670.1|4052593_4054120_+	glycerol kinase GlpK	NA	NA	NA	NA	NA
WP_003815061.1|4054138_4054606_-	CopD family protein	NA	NA	NA	NA	NA
WP_010931671.1|4054605_4055628_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_169507388.1|4055748_4056468_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	39.9	4.7e-34
WP_003815066.1|4056543_4057644_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003815068.1|4057645_4058836_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003815070.1|4058955_4059972_-	amino acid ABC transporter substrate-binding protein	NA	A0A1B1IT51	uncultured_Mediterranean_phage	42.1	1.0e-71
WP_003815073.1|4060290_4060962_+	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	38.2	9.5e-29
WP_010927126.1|4060958_4061867_+	FtsX-like permease family protein	NA	NA	NA	NA	NA
WP_010931672.1|4062078_4062726_+	chemoreceptor glutamine deamidase CheD	NA	NA	NA	NA	NA
WP_010931673.1|4066577_4067654_+	A/G-specific adenine glycosylase	NA	NA	NA	NA	NA
WP_003815084.1|4067664_4068474_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003815086.1|4068563_4069337_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_023853189.1|4069337_4069502_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930363.1|4069519_4070470_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_077274100.1|4070358_4071381_+	CoA transferase	NA	NA	NA	NA	NA
WP_010931674.1|4071370_4072525_+	CoA transferase	NA	NA	NA	NA	NA
WP_010931675.1|4072564_4073977_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_019247370.1|4074101_4074968_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931677.1|4074969_4075794_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_023853488.1|4075790_4076552_+	nitroreductase	NA	M1I6Q5	Acanthocystis_turfacea_Chlorella_virus	31.0	2.0e-19
WP_003808010.1|4076632_4077319_-	TetR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931679.1|4077492_4078500_+	hydroxymethylglutaryl-CoA lyase	NA	NA	NA	NA	NA
WP_003819309.1|4078496_4079276_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010931680.1|4079333_4080596_+	CoA transferase	NA	NA	NA	NA	NA
WP_010929591.1|4081142_4082093_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
