The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP010838	Bordetella pertussis strain H374 chromosome, complete genome	4107437	27282	70036	4107437	tRNA,transposase	Synechococcus_phage(50.0%)	41	NA	NA
WP_010930363.1|27282_28233_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023995007.1|28314_28650_-	CoA transferase	NA	NA	NA	NA	NA
WP_010929578.1|28674_29109_-	OB-fold domain-containing protein	NA	NA	NA	NA	NA
WP_019247164.1|29141_30359_-	thiolase family protein	NA	NA	NA	NA	NA
WP_010929580.1|30364_30862_-	MaoC family dehydratase	NA	NA	NA	NA	NA
WP_019247165.1|31069_32005_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929582.1|32214_33006_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010929583.1|33048_34470_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_010929584.1|34625_35576_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814398.1|35572_36763_-	MFS transporter	NA	NA	NA	NA	NA
WP_010929585.1|37012_37924_+|tRNA	glycine--tRNA ligase subunit alpha	tRNA	NA	NA	NA	NA
WP_010929586.1|37925_40064_+|tRNA	glycine--tRNA ligase subunit beta	tRNA	NA	NA	NA	NA
WP_003814404.1|40060_40600_+	D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase	NA	NA	NA	NA	NA
WP_003814405.1|40603_41332_+	1-acyl-sn-glycerol-3-phosphate acyltransferase	NA	NA	NA	NA	NA
WP_010929587.1|41318_42212_+	M48 family metallopeptidase	NA	NA	NA	NA	NA
WP_019247766.1|42282_42678_+	lactoylglutathione lyase	NA	NA	NA	NA	NA
WP_003814412.1|42687_43218_+	peptide deformylase	NA	E3SLL2	Synechococcus_phage	35.4	3.7e-12
WP_010929588.1|43663_44614_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929589.1|45200_45749_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815265.1|45720_45957_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003815255.1|46084_46978_+	AEC family transporter	NA	NA	NA	NA	NA
WP_010929590.1|48147_49395_+	homoserine O-acetyltransferase	NA	NA	NA	NA	NA
WP_003817748.1|49391_50006_+	methionine biosynthesis protein MetW	NA	NA	NA	NA	NA
WP_010929591.1|50141_51092_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_029443813.1|51134_52391_+	muropeptide transporter	NA	NA	NA	NA	NA
WP_010929592.1|53622_54357_-	aspartate/glutamate racemase family protein	NA	NA	NA	NA	NA
WP_019247224.1|54362_54953_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.6	3.2e-20
WP_003817737.1|54977_55667_-	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_023852650.1|55663_56425_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010929594.1|56504_57404_-	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_005012808.1|57497_58448_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929595.1|59248_60475_-	type II toxin-antitoxin system HipA family toxin	NA	NA	NA	NA	NA
WP_047122776.1|60474_60888_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010929597.1|61077_62019_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019248755.1|62442_63417_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929599.1|63473_64055_-	DJ-1/PfpI family protein	NA	NA	NA	NA	NA
WP_010929600.1|64067_64370_-	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA	NA
WP_029443770.1|64488_65547_-	2Fe-2S iron-sulfur cluster binding domain-containing protein	NA	NA	NA	NA	NA
WP_019247832.1|65581_66853_-	TRAP transporter large permease	NA	NA	NA	NA	NA
WP_010929603.1|67482_68664_-	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_005012808.1|69085_70036_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 2
NZ_CP010838	Bordetella pertussis strain H374 chromosome, complete genome	4107437	77634	136108	4107437	tRNA,transposase	Planktothrix_phage(22.22%)	54	NA	NA
WP_005012067.1|77634_78585_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_041166334.1|78659_79604_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929608.1|79600_81475_-	O-antigen biosynthesis protein WlbL	NA	A0A2P1ELS8	Moumouvirus	26.9	2.0e-23
WP_003807102.1|82822_83527_-	O-antigen biosynthesis protein WlbI	NA	NA	NA	NA	NA
WP_010929609.1|83523_84696_-	O-antigen biosynthesis protein WlbH	NA	NA	NA	NA	NA
WP_010929610.1|84891_85485_-	O-antigen biosynthesis protein WlbG	NA	NA	NA	NA	NA
WP_010929611.1|85481_86714_-	O-antigen biosynthesis protein WlbF	NA	NA	NA	NA	NA
WP_010929612.1|86731_87991_-	O-antigen biosynthesis protein WlbE	NA	NA	NA	NA	NA
WP_010929613.1|88014_89103_-	O-antigen biosynthesis protein WlbD	NA	A0A0N9R0B2	Chrysochromulina_ericina_virus	36.3	4.8e-46
WP_010929614.1|89110_90211_-	O-antigen biosynthesis protein WlbC	NA	A0A2K9L0G1	Tupanvirus	29.7	3.3e-31
WP_003807114.1|90214_90790_-	O-antigen biosynthesis protein WlbB	NA	NA	NA	NA	NA
WP_003807115.1|90793_91846_-	O-antigen biosynthesis protein WlbA	NA	NA	NA	NA	NA
WP_010929615.1|91976_92984_+	lipopolysaccharide heptosyltransferase I	NA	NA	NA	NA	NA
WP_010929616.1|92985_94272_+	3-deoxy-D-manno-octulosonic acid transferase	NA	NA	NA	NA	NA
WP_003807124.1|94288_94444_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929617.1|94468_95272_-	type III pantothenate kinase	NA	NA	NA	NA	NA
WP_010929618.1|95268_96135_-	biotin--[acetyl-CoA-carboxylase] ligase	NA	NA	NA	NA	NA
WP_010929619.1|96209_97340_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_003807131.1|97339_98179_+	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	32.4	9.1e-21
WP_010929620.1|99111_99714_+	membrane integrity-associated transporter subunit PqiC	NA	NA	NA	NA	NA
WP_010929621.1|99743_100397_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003807138.1|100529_101786_+	D-alanyl-D-alanine carboxypeptidase	NA	B6DZZ7	Stx2-converting_phage	40.5	6.2e-66
WP_010929622.1|101833_102733_+	D-amino acid aminotransferase	NA	NA	NA	NA	NA
WP_003818417.1|102808_103084_+	YbeD family protein	NA	NA	NA	NA	NA
WP_010929623.1|103091_103754_+	lipoyl(octanoyl) transferase LipB	NA	NA	NA	NA	NA
WP_003807146.1|103815_104817_+	lipoyl synthase	NA	NA	NA	NA	NA
WP_003807148.1|104831_105380_-	dTDP-4-dehydrorhamnose 3,5-epimerase	NA	A0A291LA62	Escherichia_phage	53.4	3.7e-47
WP_010929624.1|105437_106334_-	dTDP-4-dehydrorhamnose reductase	NA	NA	NA	NA	NA
WP_010929625.1|106330_107392_-	dTDP-glucose 4,6-dehydratase	NA	A0A1D7XFE8	Escherichia_phage	44.8	1.6e-78
WP_010929626.1|107427_108378_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929627.1|109277_110471_+	cystathionine beta-lyase	NA	NA	NA	NA	NA
WP_010929628.1|110552_111182_-	thiol:disulfide interchange protein DsbA/DsbL	NA	NA	NA	NA	NA
WP_010927242.1|111243_111927_-	SPOR domain-containing protein	NA	NA	NA	NA	NA
WP_023853376.1|111936_113619_-|tRNA	arginine--tRNA ligase	tRNA	NA	NA	NA	NA
WP_003815933.1|113906_114254_+	DUF1840 domain-containing protein	NA	NA	NA	NA	NA
WP_003815930.1|114344_114662_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931363.1|114944_115961_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003815929.1|116036_116837_-	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
WP_003815927.1|116833_117709_-	sugar ABC transporter permease	NA	NA	NA	NA	NA
WP_010929633.1|117719_119012_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929634.1|119054_120095_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.7	6.0e-22
WP_010929635.1|120200_121022_-	phosphodiesterase	NA	NA	NA	NA	NA
WP_005012067.1|121122_122073_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014905488.1|122171_123077_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	31.7	9.8e-21
WP_003815918.1|123073_123907_-	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_010929637.1|124743_125754_-	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_019247800.1|125750_126140_-	substrate-binding domain-containing protein	NA	NA	NA	NA	NA
WP_010929638.1|127033_128287_+	amidase	NA	NA	NA	NA	NA
WP_010929639.1|128377_130078_-	2-isopropylmalate synthase	NA	NA	NA	NA	NA
WP_010929640.1|130504_131152_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023853393.1|131150_132590_+	RNA polymerase factor sigma-54	NA	NA	NA	NA	NA
WP_003815905.1|132682_132985_+	bacterioferritin-associated ferredoxin	NA	NA	NA	NA	NA
WP_010929512.1|133012_133891_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|135157_136108_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 3
NZ_CP010838	Bordetella pertussis strain H374 chromosome, complete genome	4107437	164893	225404	4107437	tRNA,protease,transposase	Diachasmimorpha_longicaudata_entomopoxvirus(11.11%)	51	NA	NA
WP_005015810.1|164893_165844_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929659.1|167287_168190_-	YgcG family protein	NA	NA	NA	NA	NA
WP_003815889.1|168167_168797_-	LemA family protein	NA	NA	NA	NA	NA
WP_010929660.1|169079_170510_+	DEAD/DEAH box helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	29.8	5.8e-44
WP_010929661.1|170543_171173_+	LysE family transporter	NA	NA	NA	NA	NA
WP_003815895.1|171221_172829_+	peptide chain release factor 3	NA	A0A2K9L6L3	Tupanvirus	37.8	9.3e-14
WP_010929663.1|172853_173537_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815898.1|173618_174095_-	bacterioferritin	NA	NA	NA	NA	NA
WP_010929591.1|174301_175252_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929664.1|176367_176895_+	META domain-containing protein	NA	NA	NA	NA	NA
WP_010929665.1|176986_177802_+	META and DUF4377 domain-containing protein	NA	NA	NA	NA	NA
WP_003808370.1|177862_178597_+	sulfurtransferase	NA	NA	NA	NA	NA
WP_010929666.1|178634_180713_-|tRNA	methionine--tRNA ligase	tRNA	A0A1V0SHR2	Klosneuvirus	23.6	1.5e-27
WP_003808374.1|180962_181235_-	hypothetical protein	NA	NA	NA	NA	NA
WP_033446322.1|181336_182422_+	iron-sulfur cluster carrier protein ApbC	NA	NA	NA	NA	NA
WP_010929668.1|182425_184330_+	BamA/TamA family outer membrane protein	NA	NA	NA	NA	NA
WP_014486044.1|184326_188001_+	translocation/assembly module TamB domain-containing protein	NA	NA	NA	NA	NA
WP_010929670.1|188061_188625_+	dCTP deaminase	NA	S5VM63	Pseudomonas_phage	75.3	2.6e-72
WP_003808385.1|188632_189055_-	VOC family protein	NA	NA	NA	NA	NA
WP_010929671.1|189082_189502_-	VOC family protein	NA	NA	NA	NA	NA
WP_076879599.1|189530_190004_-	GNAT family N-acetyltransferase	NA	Q9AZG4	Lactococcus_phage	31.1	2.2e-11
WP_003808391.1|190103_190601_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003808393.1|190755_193026_+	arginine/lysine/ornithine decarboxylase	NA	NA	NA	NA	NA
WP_010929672.1|193074_194307_+	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010929591.1|194405_195356_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929673.1|195458_196094_+	superoxide dismutase	NA	Q56AR7	Bacillus_thuringiensis_phage	73.8	2.8e-83
WP_019248671.1|196090_196984_+	ZIP family metal transporter	NA	NA	NA	NA	NA
WP_010929675.1|197378_198479_+	glycine cleavage system aminomethyltransferase GcvT	NA	NA	NA	NA	NA
WP_010929676.1|198560_198935_+	glycine cleavage system protein GcvH	NA	NA	NA	NA	NA
WP_010929677.1|198994_201859_+	aminomethyl-transferring glycine dehydrogenase	NA	E3SN07	Prochlorococcus_phage	51.4	1.2e-261
WP_010929678.1|202003_202744_-	FadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929679.1|202813_204025_+	CoA transferase	NA	NA	NA	NA	NA
WP_010929680.1|204053_205022_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_005013747.1|205635_206586_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929699.1|206742_207066_+	phosphate starvation-inducible protein	NA	NA	NA	NA	NA
WP_023853200.1|207170_208211_-	cyclase family protein	NA	NA	NA	NA	NA
WP_010929697.1|208216_208996_-	3-oxoadipate enol-lactonase	NA	NA	NA	NA	NA
WP_003807672.1|209041_209338_-	YciI family protein	NA	NA	NA	NA	NA
WP_003807674.1|209363_209639_-	muconolactone Delta-isomerase	NA	NA	NA	NA	NA
WP_003819086.1|209695_210340_-	CoA transferase subunit B	NA	NA	NA	NA	NA
WP_010929696.1|210339_211026_-	3-oxoacid CoA-transferase subunit A	NA	NA	NA	NA	NA
WP_010929695.1|211155_212007_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929694.1|212057_212783_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010929693.1|212814_214164_-	short-chain fatty acid transporter	NA	NA	NA	NA	NA
WP_010929692.1|214275_215208_-	3-hydroxyacyl-CoA dehydrogenase family protein	NA	NA	NA	NA	NA
WP_033446404.1|215665_218461_-|protease	serine protease autotransporter SphB1	protease	NA	NA	NA	NA
WP_010929690.1|219054_221997_-	phosphoenolpyruvate carboxylase	NA	NA	NA	NA	NA
WP_010929689.1|222068_222788_+	7-cyano-7-deazaguanine synthase QueC	NA	A0A0A0RPC6	Escherichia_phage	43.9	8.0e-50
WP_010929688.1|222826_223375_-	N-acetyltransferase	NA	A0A2H4J136	uncultured_Caudovirales_phage	41.7	1.2e-21
WP_010929687.1|223529_224429_+	virginiamycin B lyase	NA	NA	NA	NA	NA
WP_005012808.1|224453_225404_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 4
NZ_CP010838	Bordetella pertussis strain H374 chromosome, complete genome	4107437	233336	286924	4107437	tRNA,protease,transposase	Bacillus_phage(25.0%)	48	NA	NA
WP_005012067.1|233336_234287_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010927663.1|234373_235324_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930742.1|235320_236271_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929700.1|236369_237167_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_003814363.1|238116_238527_+	carboxymuconolactone decarboxylase family protein	NA	NA	NA	NA	NA
WP_003814358.1|239548_240292_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814356.1|240335_241379_-	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003814355.1|241549_243652_+	TRAP transporter large permease subunit	NA	NA	NA	NA	NA
WP_003814351.1|245062_246019_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929701.1|246037_246529_-	2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase	NA	NA	NA	NA	NA
WP_010929702.1|246525_247881_-	polynucleotide adenylyltransferase PcnB	NA	A0A1B1IVF3	uncultured_Mediterranean_phage	36.8	3.4e-25
WP_010929703.1|247881_248580_-	HAD-IB family hydrolase	NA	NA	NA	NA	NA
WP_010929704.1|248576_249278_-	DnaA regulatory inactivator Hda	NA	NA	NA	NA	NA
WP_003814339.1|249530_250580_+	phosphoribosylformylglycinamidine cyclo-ligase	NA	Q58MH8	Prochlorococcus_phage	43.6	5.6e-68
WP_003814337.1|250685_251627_-|tRNA	tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA	tRNA	NA	NA	NA	NA
WP_010929705.1|251623_253513_-	DNA mismatch repair endonuclease MutL	NA	A0A1B2LRQ5	Wolbachia_phage	32.8	3.3e-79
WP_003814332.1|253599_254238_+	VTT domain-containing protein	NA	NA	NA	NA	NA
WP_019247543.1|254380_255766_-	N-acetylmuramoyl-L-alanine amidase	NA	A0A2H4JCM7	uncultured_Caudovirales_phage	30.3	4.5e-17
WP_010929706.1|255696_256233_-|tRNA	bifunctional alanine racemase/tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE	tRNA	NA	NA	NA	NA
WP_010929707.1|256384_257776_+	class II fumarate hydratase	NA	NA	NA	NA	NA
WP_010929708.1|257792_258773_-	AEC family transporter	NA	NA	NA	NA	NA
WP_003814324.1|258908_259892_+	tripartite tricarboxylate transporter substrate binding protein BugE	NA	NA	NA	NA	NA
WP_010929709.1|259956_260856_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814321.1|260962_262717_+	gamma-glutamyltransferase	NA	NA	NA	NA	NA
WP_010929710.1|262724_263849_-	CoA transferase	NA	NA	NA	NA	NA
WP_010929711.1|263862_264843_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_005012067.1|265573_266524_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929712.1|267083_267629_+	GbsR/MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929713.1|267712_269332_+	cytochrome d ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
WP_004567834.1|269347_270502_+	cytochrome d ubiquinol oxidase subunit II	NA	NA	NA	NA	NA
WP_003817696.1|270515_270641_+	cytochrome bd-I oxidase subunit CydX	NA	NA	NA	NA	NA
WP_010929714.1|270637_272389_+	thiol reductant ABC exporter subunit CydD	NA	W8CYL7	Bacillus_phage	23.8	3.4e-09
WP_010929715.1|272385_274065_+	thiol reductant ABC exporter subunit CydC	NA	W8CYL7	Bacillus_phage	27.6	3.6e-16
WP_010929716.1|274127_274676_+	adenine phosphoribosyltransferase	NA	A0A1V0SKE5	Klosneuvirus	43.1	1.3e-28
WP_010929717.1|275818_276097_+	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|277140_278091_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_173651708.1|278108_278255_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929718.1|278368_278530_+	DUF4224 domain-containing protein	NA	NA	NA	NA	NA
WP_010929719.1|278537_278678_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815821.1|279196_279646_-|protease	ClpXP protease specificity-enhancing factor	protease	NA	NA	NA	NA
WP_003815819.1|279655_280267_-	glutathione S-transferase N-terminal domain-containing protein	NA	NA	NA	NA	NA
WP_019247426.1|280425_281280_-	cytochrome c1	NA	NA	NA	NA	NA
WP_003815816.1|281299_282682_-	cytochrome bc complex cytochrome b subunit	NA	NA	NA	NA	NA
WP_003815815.1|282746_283388_-	ubiquinol-cytochrome c reductase iron-sulfur subunit	NA	NA	NA	NA	NA
WP_010929721.1|283527_283986_+	large conductance mechanosensitive channel protein MscL	NA	NA	NA	NA	NA
WP_010927226.1|284010_284787_-	Nif3-like dinuclear metal center hexameric protein	NA	NA	NA	NA	NA
WP_014906092.1|284840_285977_+	trypsin-like peptidase domain-containing protein	NA	W5SAB9	Pithovirus	31.2	1.2e-07
WP_005015810.1|285973_286924_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 5
NZ_CP010838	Bordetella pertussis strain H374 chromosome, complete genome	4107437	354918	414386	4107437	tRNA,transposase	Streptococcus_phage(50.0%)	56	NA	NA
WP_010929969.1|354918_355869_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929759.1|355980_356703_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003815420.1|356801_357545_-	sulfite exporter TauE/SafE family protein	NA	NA	NA	NA	NA
WP_010929760.1|357775_359284_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815418.1|359403_360135_+	iron-containing redox enzyme family protein	NA	NA	NA	NA	NA
WP_010929761.1|360179_361640_+	aldehyde dehydrogenase family protein	NA	NA	NA	NA	NA
WP_010929762.1|361664_362144_+	heme-binding protein	NA	NA	NA	NA	NA
WP_003817846.1|362162_363173_+	2Fe-2S iron-sulfur cluster binding domain-containing protein	NA	NA	NA	NA	NA
WP_010929763.1|363387_364128_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_023997839.1|364334_365345_+	beta-propeller fold lactonase family protein	NA	NA	NA	NA	NA
WP_010929765.1|365304_366255_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929766.1|367303_367942_+	trimeric intracellular cation channel family protein	NA	NA	NA	NA	NA
WP_010929767.1|367978_369322_-	NADP-specific glutamate dehydrogenase	NA	NA	NA	NA	NA
WP_010929768.1|369744_370533_-	exodeoxyribonuclease III	NA	M1PSC0	Streptococcus_phage	25.7	1.2e-19
WP_010929769.1|370670_371345_+	orotate phosphoribosyltransferase	NA	NA	NA	NA	NA
WP_010929770.1|371458_372913_-|tRNA	Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatB	tRNA	NA	NA	NA	NA
WP_010929771.1|372915_374454_-|tRNA	Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatA	tRNA	NA	NA	NA	NA
WP_010929772.1|374456_374765_-|tRNA	Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatC	tRNA	NA	NA	NA	NA
WP_003815204.1|374995_376039_+	rod shape-determining protein	NA	NA	NA	NA	NA
WP_010929773.1|376127_377012_+	rod shape-determining protein MreC	NA	NA	NA	NA	NA
WP_003815202.1|376998_377562_+	rod shape-determining protein MreD	NA	NA	NA	NA	NA
WP_003815201.1|377575_379528_+	penicillin-binding protein 2	NA	NA	NA	NA	NA
WP_062826516.1|379524_380661_+	rod shape-determining protein RodA	NA	NA	NA	NA	NA
WP_010929775.1|380686_381742_-	Ldh family oxidoreductase	NA	NA	NA	NA	NA
WP_010929776.1|381752_383246_-	DASS family sodium-coupled anion symporter	NA	NA	NA	NA	NA
WP_010927138.1|383458_384034_-	nucleoid occlusion factor SlmA	NA	NA	NA	NA	NA
WP_010929777.1|384083_384830_-	pyrimidine 5'-nucleotidase	NA	NA	NA	NA	NA
WP_010929778.1|384829_385732_-	acetylglutamate kinase	NA	NA	NA	NA	NA
WP_010929779.1|385993_386782_+	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003815191.1|386922_387414_-	TlpA family protein disulfide reductase	NA	NA	NA	NA	NA
WP_003815190.1|387410_388154_-	BON domain-containing protein	NA	NA	NA	NA	NA
WP_033446211.1|388150_388744_-	phosphoheptose isomerase	NA	A0A067XQR2	Caulobacter_phage	34.8	5.6e-17
WP_100208326.1|388752_389229_-	YraN family protein	NA	NA	NA	NA	NA
WP_010929780.1|389353_390292_+	16S rRNA (cytidine(1402)-2'-O)-methyltransferase	NA	NA	NA	NA	NA
WP_010929781.1|390288_390861_+	methylated-DNA--[protein]-cysteine S-methyltransferase	NA	M1PFU9	Streptococcus_phage	42.5	3.2e-25
WP_005012067.1|390857_391808_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010927231.1|391944_392862_+	reductase	NA	NA	NA	NA	NA
WP_003815842.1|392858_393107_+	glutaredoxin family protein	NA	NA	NA	NA	NA
WP_003815840.1|393103_394309_+	CoA transferase	NA	NA	NA	NA	NA
WP_014486045.1|394381_395377_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_014486046.1|395399_396620_-	CoA transferase	NA	NA	NA	NA	NA
WP_014486047.1|396616_397261_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019248476.1|398991_399801_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_014486048.1|400105_401059_+	thioredoxin-disulfide reductase	NA	A0A2I2L5E1	Orpheovirus	42.5	5.6e-59
WP_014486049.1|401157_402141_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014486050.1|402067_402769_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_014486051.1|402817_403588_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_019247259.1|403584_404763_-	CoA transferase	NA	NA	NA	NA	NA
WP_014486052.1|404930_406637_-	thiamine pyrophosphate-requiring protein	NA	NA	NA	NA	NA
WP_014486053.1|406633_407530_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_014486054.1|407570_409160_-	rhodanese homology domain-containing protein	NA	NA	NA	NA	NA
WP_003807867.1|409209_410202_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003807865.1|410270_410870_-	hypothetical protein	NA	NA	NA	NA	NA
WP_014486055.1|411330_412311_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929577.1|412386_413337_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|413435_414386_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 6
NZ_CP010838	Bordetella pertussis strain H374 chromosome, complete genome	4107437	422197	477171	4107437	transposase	Bradyrhizobium_phage(20.0%)	44	NA	NA
WP_022997984.1|422197_423175_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929785.1|423370_424576_+	sodium/glutamate symporter	NA	NA	NA	NA	NA
WP_010929786.1|424572_426084_+	TAXI family TRAP transporter solute-binding subunit	NA	NA	NA	NA	NA
WP_003814726.1|426099_427413_-	short-chain fatty acid transporter	NA	NA	NA	NA	NA
WP_003814728.1|427603_427783_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003814730.1|428192_428927_-	DNA polymerase III subunit epsilon	NA	A0A1X9SH08	Bradyrhizobium_phage	43.8	1.4e-41
WP_010929577.1|431371_432322_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247421.1|432453_432852_-	GTP-binding protein	NA	E4ZFJ7	Streptococcus_phage	44.3	9.0e-19
WP_003814701.1|433262_433733_-	universal stress protein	NA	NA	NA	NA	NA
WP_003820700.1|433821_434166_-	TIGR01244 family phosphatase	NA	NA	NA	NA	NA
WP_010929788.1|434265_435666_-	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
WP_010929789.1|437454_437973_-	MgtC/SapB family protein	NA	G3MA03	Bacillus_virus	38.9	2.1e-12
WP_003814694.1|438083_438839_+	TerC family protein	NA	A0A0R6PEZ3	Moraxella_phage	40.8	2.9e-42
WP_003814691.1|439034_440267_+	CoA transferase	NA	NA	NA	NA	NA
WP_010929791.1|440259_441045_+	crotonase/enoyl-CoA hydratase family protein	NA	NA	NA	NA	NA
WP_003814685.1|441111_442083_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003814681.1|442093_443071_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247419.1|443196_444369_+	acyl-CoA dehydrogenase family protein	NA	NA	NA	NA	NA
WP_010929793.1|444395_445424_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_003814674.1|445489_446683_+	acetyl-CoA C-acyltransferase	NA	NA	NA	NA	NA
WP_005012067.1|448464_449415_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929577.1|449513_450464_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929794.1|450562_451468_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929795.1|451643_451847_-	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	58.2	5.8e-14
WP_010929796.1|452357_452798_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929797.1|452827_453487_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019248869.1|453572_455189_-	L-glutamate gamma-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
WP_010929799.1|455209_456673_-	short-chain fatty acid transporter	NA	NA	NA	NA	NA
WP_010929800.1|456703_460090_-	molybdopterin-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010929801.1|460231_460636_-	RidA family protein	NA	NA	NA	NA	NA
WP_010929802.1|460779_461766_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247316.1|461752_462034_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929803.1|462779_464012_-	CoA transferase	NA	NA	NA	NA	NA
WP_010929804.1|464011_464506_-	MaoC family dehydratase	NA	NA	NA	NA	NA
WP_010929805.1|464637_465600_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929806.1|465577_466831_-	CoA transferase	NA	NA	NA	NA	NA
WP_005013747.1|466952_467903_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003821340.1|467899_468562_-	protein-methionine-sulfoxide reductase heme-binding subunit MsrQ	NA	NA	NA	NA	NA
WP_010929831.1|468569_469529_-	protein-methionine-sulfoxide reductase catalytic subunit MsrP	NA	NA	NA	NA	NA
WP_010929830.1|469685_470357_-	HAD family hydrolase	NA	NA	NA	NA	NA
WP_023853155.1|470359_471325_-	RluA family pseudouridine synthase	NA	NA	NA	NA	NA
WP_062826517.1|471832_474961_+	Rne/Rng family ribonuclease	NA	NA	NA	NA	NA
WP_010929827.1|475036_476104_-	linear amide C-N hydrolase	NA	NA	NA	NA	NA
WP_005012067.1|476220_477171_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 7
NZ_CP010838	Bordetella pertussis strain H374 chromosome, complete genome	4107437	591469	652660	4107437	protease,transposase	uncultured_Mediterranean_phage(40.0%)	56	NA	NA
WP_005013747.1|591469_592420_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023998122.1|592916_593786_+	phosphonate ABC transporter, permease protein PhnE	NA	NA	NA	NA	NA
WP_010931496.1|593782_594604_+	phosphonate ABC transporter, permease protein PhnE	NA	NA	NA	NA	NA
WP_019247235.1|594803_595295_+	CYTH domain-containing protein	NA	NA	NA	NA	NA
WP_019247236.1|595313_596387_+	CHAD domain-containing protein	NA	NA	NA	NA	NA
WP_023853086.1|596433_597537_-	signal recognition particle-docking protein FtsY	NA	NA	NA	NA	NA
WP_003808577.1|597612_598233_+	16S rRNA (guanine(966)-N(2))-methyltransferase RsmD	NA	NA	NA	NA	NA
WP_003808574.1|598253_598763_+	pantetheine-phosphate adenylyltransferase	NA	A0A1B1IVQ3	uncultured_Mediterranean_phage	42.1	1.2e-28
WP_003808570.1|598817_599069_+	YfhL family 4Fe-4S dicluster ferredoxin	NA	A0A1B1IWY9	uncultured_Mediterranean_phage	53.4	1.6e-18
WP_010931494.1|599132_600266_+	benzoate/H(+) symporter BenE family transporter	NA	NA	NA	NA	NA
WP_003808567.1|600273_600660_-	MOSC N-terminal beta barrel domain-containing protein	NA	NA	NA	NA	NA
WP_010931493.1|600656_603176_-	AsmA family protein	NA	NA	NA	NA	NA
WP_003808563.1|603604_603943_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003808562.1|603939_604446_+	SRPBCC family protein	NA	NA	NA	NA	NA
WP_010931492.1|604507_605308_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931491.1|605418_606360_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931490.1|606453_607989_-	M81 family metallopeptidase	NA	NA	NA	NA	NA
WP_010931489.1|609668_611519_-	dipeptide ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	29.2	1.6e-17
WP_003808549.1|611522_612356_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931488.1|612355_613297_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931487.1|613548_614520_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931486.1|614661_616950_+	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
WP_003808542.1|617256_618165_+	TauD/TfdA family dioxygenase	NA	NA	NA	NA	NA
WP_010931485.1|618219_619185_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931484.1|619259_620921_+	thiamine pyrophosphate-binding protein	NA	NA	NA	NA	NA
WP_010931483.1|620992_621703_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_154698388.1|621669_621834_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|621851_622802_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814152.1|623500_623884_+	membrane protein	NA	NA	NA	NA	NA
WP_010927005.1|623941_624544_+	DUF2946 family protein	NA	NA	NA	NA	NA
WP_003820995.1|624561_624963_-	DoxX family protein	NA	NA	NA	NA	NA
WP_003814158.1|625096_625990_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931481.1|625986_626568_+	NUDIX hydrolase	NA	NA	NA	NA	NA
WP_003814165.1|627362_628097_+	arginyltransferase	NA	NA	NA	NA	NA
WP_010931480.1|628137_629187_+	quinone-dependent dihydroorotate dehydrogenase	NA	NA	NA	NA	NA
WP_003814172.1|629334_629913_-	TIGR01841 family phasin	NA	NA	NA	NA	NA
WP_010931479.1|630299_631277_+	tripartite tricarboxylate transporter substrate binding protein BugD	NA	NA	NA	NA	NA
WP_010931478.1|631370_635765_-	dermonecrotic toxin	NA	NA	NA	NA	NA
WP_003814178.1|635965_636814_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931477.1|636972_637785_-	competence/damage-inducible protein A	NA	NA	NA	NA	NA
WP_005015810.1|637840_638791_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931453.1|638889_639690_-	EI24 domain-containing protein	NA	NA	NA	NA	NA
WP_003814185.1|639751_640135_+	thioredoxin family protein	NA	NA	NA	NA	NA
WP_010931454.1|640146_641580_-	DEAD/DEAH box helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	34.4	1.5e-52
WP_003814188.1|641786_642116_-	AzlD domain-containing protein	NA	NA	NA	NA	NA
WP_010931455.1|642118_642868_-	AzlC family ABC transporter permease	NA	NA	NA	NA	NA
WP_010931456.1|643050_643971_+	branched-chain amino acid transaminase	NA	NA	NA	NA	NA
WP_003814195.1|644017_644230_+	zinc-finger domain-containing protein	NA	NA	NA	NA	NA
WP_010931457.1|644252_644675_+	nuclear transport factor 2 family protein	NA	NA	NA	NA	NA
WP_010931458.1|644691_645792_+	alpha/beta fold hydrolase	NA	NA	NA	NA	NA
WP_010931459.1|645888_647406_-|protease	M48 family metalloprotease	protease	NA	NA	NA	NA
WP_003814203.1|647481_648321_+	UTP--glucose-1-phosphate uridylyltransferase GalU	NA	A0A127AW70	Bacillus_phage	48.9	1.1e-66
WP_003814205.1|648342_649224_-	cytochrome c oxidase assembly protein	NA	NA	NA	NA	NA
WP_003814206.1|649305_650400_-	porin	NA	NA	NA	NA	NA
WP_076879617.1|650693_651644_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_041166340.1|651718_652660_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 8
NZ_CP010838	Bordetella pertussis strain H374 chromosome, complete genome	4107437	657984	704175	4107437	tail,tRNA,terminase,transposase	uncultured_Caudovirales_phage(18.18%)	51	NA	NA
WP_023995141.1|657984_659010_+|tRNA	tRNA dihydrouridine synthase DusB	tRNA	NA	NA	NA	NA
WP_003814221.1|659050_659290_+	DNA-binding protein	NA	NA	NA	NA	NA
WP_010931464.1|659359_660949_+	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase	NA	Q58MG4	Prochlorococcus_phage	47.2	8.7e-65
WP_010931465.1|660948_661497_+	crossover junction endodeoxyribonuclease RuvC	NA	NA	NA	NA	NA
WP_003814226.1|661577_662150_+	Holliday junction branch migration protein RuvA	NA	NA	NA	NA	NA
WP_010927008.1|662168_663080_-	complex I NDUFA9 subunit family protein	NA	NA	NA	NA	NA
WP_003814230.1|663153_664122_-	threo-3-hydroxy-L-aspartate ammonia-lyase	NA	NA	NA	NA	NA
WP_010931466.1|664244_665318_+	Holliday junction branch migration DNA helicase RuvB	NA	A0A127AWE7	Bacillus_phage	25.7	2.3e-08
WP_010931467.1|665322_667143_-	DNA helicase RecQ	NA	L7RCS0	Acanthamoeba_polyphaga_moumouvirus	35.3	3.1e-74
WP_005015810.1|667219_668170_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_033446132.1|668258_668594_+	ASCH domain-containing protein	NA	NA	NA	NA	NA
WP_003819076.1|668727_669378_+	carbonic anhydrase	NA	NA	NA	NA	NA
WP_010931468.1|669399_670818_-	amidase	NA	NA	NA	NA	NA
WP_019248554.1|670887_671643_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019247734.1|671611_672370_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010931471.1|672380_673262_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010931472.1|673278_673986_+	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	25.4	8.2e-07
WP_010931473.1|673988_674747_+	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	24.4	4.4e-14
WP_010931474.1|674956_676699_+	nitrite/sulfite reductase	NA	NA	NA	NA	NA
WP_010925795.1|676691_677216_+	DUF934 domain-containing protein	NA	NA	NA	NA	NA
WP_010931475.1|677255_678050_-	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019248926.1|678217_679291_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929591.1|679389_680340_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247378.1|680591_680798_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931451.1|680869_681481_-	S24 family peptidase	NA	NA	NA	NA	NA
WP_023853179.1|682035_682287_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_161633094.1|682279_682969_+	hypothetical protein	NA	NA	NA	NA	NA
WP_023853183.1|682986_683208_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|683225_684176_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247942.1|684815_685301_+|transposase	transposase	transposase	C7U0W1	Enterobacteria_phage	61.5	7.3e-39
WP_010931447.1|685287_686565_+|terminase	terminase large subunit	terminase	A0A1B1P9C9	Acinetobacter_phage	64.7	2.4e-150
WP_010931446.1|686567_687986_+	DUF4055 domain-containing protein	NA	R9TF43	Synechococcus_phage	42.1	2.2e-99
WP_010931445.1|688014_689070_+	hypothetical protein	NA	A0A0H5BBX3	Pseudomonas_phage	50.6	2.6e-97
WP_010931444.1|689075_689318_+	hypothetical protein	NA	A0A0H5AUE5	Pseudomonas_phage	53.2	5.6e-16
WP_010931443.1|689440_690043_+	hypothetical protein	NA	R9TF81	Synechococcus_phage	43.6	7.9e-27
WP_005012808.1|690471_691422_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931442.1|692096_692348_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247789.1|692410_692893_+	hypothetical protein	NA	A0A2H4JE38	uncultured_Caudovirales_phage	37.1	1.8e-13
WP_010931440.1|692894_693095_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931439.1|693094_693490_+	hypothetical protein	NA	A0A2D2W284	Stenotrophomonas_phage	35.0	7.8e-07
WP_010931438.1|693486_693885_+	hypothetical protein	NA	I6PCW1	Cronobacter_phage	38.0	4.2e-16
WP_010931437.1|693881_694304_+	DUF4128 domain-containing protein	NA	NA	NA	NA	NA
WP_010931436.1|694311_694812_+	HNH endonuclease	NA	A0A1I9SEX5	Klebsiella_phage	45.1	4.4e-31
WP_010931435.1|695066_695585_+|tail	phage tail protein	tail	A0A1S5R1H0	Pseudomonas_phage	38.3	5.4e-24
WP_003813412.1|695594_695924_+|tail	phage tail assembly chaperone	tail	A0A2H4J121	uncultured_Caudovirales_phage	44.0	2.9e-15
WP_010931434.1|695941_696232_+	DUF1799 domain-containing protein	NA	A0A2H4JBP7	uncultured_Caudovirales_phage	45.2	3.7e-14
WP_010931433.1|696257_698870_+|tail	phage tail tape measure protein	tail	A0A2H4J107	uncultured_Caudovirales_phage	38.6	4.9e-105
WP_010931432.1|698879_699239_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931431.1|699306_699840_+	DUF1833 family protein	NA	A5A3Q9	Burkholderia_phage	46.9	1.1e-40
WP_010931430.1|699836_700226_+	C40 family peptidase	NA	A0A0G3EYJ9	Achromobacter_phage	50.0	3.0e-35
WP_010931429.1|700218_704175_+	DUF1983 domain-containing protein	NA	A0A0B5A1N2	Achromobacter_phage	40.8	3.9e-215
>prophage 9
NZ_CP010838	Bordetella pertussis strain H374 chromosome, complete genome	4107437	710341	764271	4107437	tRNA,transposase	Planktothrix_phage(50.0%)	46	NA	NA
WP_003814636.1|710341_712072_+|tRNA	proline--tRNA ligase	tRNA	A0A2K9L3R9	Tupanvirus	29.4	4.6e-11
WP_010931419.1|712124_712553_+	tol-pal system-associated acyl-CoA thioesterase	NA	NA	NA	NA	NA
WP_003814641.1|712555_713236_+	protein TolQ	NA	NA	NA	NA	NA
WP_003814643.1|713235_713694_+	protein TolR	NA	NA	NA	NA	NA
WP_010931418.1|713730_714705_+	cell envelope integrity protein TolA	NA	NA	NA	NA	NA
WP_010931417.1|714721_716038_+	Tol-Pal system protein TolB	NA	NA	NA	NA	NA
WP_003814650.1|716069_716567_+	peptidoglycan-associated lipoprotein Pal	NA	NA	NA	NA	NA
WP_003814652.1|716653_717343_+	tol-pal system protein YbgF	NA	NA	NA	NA	NA
WP_010931416.1|717342_718392_+	iron ABC transporter permease	NA	NA	NA	NA	NA
WP_003814657.1|718388_719183_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.6	2.4e-15
WP_019247923.1|719351_719702_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247922.1|719677_720235_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_005012808.1|721364_722315_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929184.1|724452_725682_+	spore maturation protein	NA	NA	NA	NA	NA
WP_003814419.1|725684_727127_-	pyruvate kinase	NA	NA	NA	NA	NA
WP_010931414.1|727231_728377_+	glycerate kinase	NA	W6LM47	Streptococcus_phage	42.2	1.7e-41
WP_010931413.1|728408_729206_-	16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA	NA	NA	NA	NA	NA
WP_010931412.1|729230_730790_-	chaperone SurA	NA	NA	NA	NA	NA
WP_010931411.1|730786_733159_-	LPS-assembly protein LptD	NA	NA	NA	NA	NA
WP_010931410.1|733268_734372_+	phosphotransferase	NA	NA	NA	NA	NA
WP_010931409.1|734371_735064_+	nucleotidyltransferase family protein	NA	NA	NA	NA	NA
WP_003814436.1|735207_735909_+	membrane protein	NA	NA	NA	NA	NA
WP_003814437.1|735893_736271_-	4a-hydroxytetrahydrobiopterin dehydratase	NA	NA	NA	NA	NA
WP_005012067.1|737002_737953_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814441.1|738112_738985_-	oxaloacetate decarboxylase	NA	NA	NA	NA	NA
WP_003814443.1|739325_739544_+	DUF1059 domain-containing protein	NA	NA	NA	NA	NA
WP_019247242.1|739583_740963_-	aminotransferase class III-fold pyridoxal phosphate-dependent enzyme	NA	NA	NA	NA	NA
WP_010929976.1|741004_742402_-	amidase family protein	NA	NA	NA	NA	NA
WP_010927038.1|742441_744094_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.8	6.0e-16
WP_010929977.1|744097_744982_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010929978.1|744981_745923_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010929979.1|746001_747621_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929980.1|747787_748603_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814459.1|748670_749240_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005013747.1|749240_750191_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814461.1|750845_751943_+	carboxynorspermidine decarboxylase	NA	NA	NA	NA	NA
WP_003814462.1|751976_753242_+	saccharopine dehydrogenase family protein	NA	NA	NA	NA	NA
WP_010929591.1|753399_754350_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929982.1|754593_755184_+	polyisoprenoid-binding protein	NA	NA	NA	NA	NA
WP_010929983.1|755199_757644_-	TonB-dependent siderophore receptor	NA	NA	NA	NA	NA
WP_003814467.1|757763_758735_-	FecR family protein	NA	NA	NA	NA	NA
WP_023852739.1|758866_759391_+	sigma-70 family RNA polymerase sigma factor	NA	NA	NA	NA	NA
WP_005012067.1|759350_760301_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929984.1|760522_762718_-	DUF1156 domain-containing protein	NA	NA	NA	NA	NA
WP_010929985.1|762790_763219_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_005012808.1|763320_764271_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 10
NZ_CP010838	Bordetella pertussis strain H374 chromosome, complete genome	4107437	855149	904413	4107437	holin,transposase	Vibrio_phage(33.33%)	40	NA	NA
WP_005012067.1|855149_856100_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247352.1|856117_856672_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003813949.1|856673_857108_+	PaaI family thioesterase	NA	NA	NA	NA	NA
WP_003813951.1|857104_857539_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003813952.1|857522_858326_-	phosphatase PAP2 family protein	NA	NA	NA	NA	NA
WP_003813954.1|858342_859158_-	metallophosphoesterase	NA	NA	NA	NA	NA
WP_019248500.1|859154_859970_-	diacylglycerol kinase	NA	NA	NA	NA	NA
WP_010930033.1|860116_860818_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003813960.1|860845_862804_-|holin	choline BCCT transporter BetT	holin	A0A2I7QNT1	Vibrio_phage	30.3	8.0e-28
WP_005013747.1|862886_863837_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930032.1|864057_864726_+	transcriptional regulator	NA	NA	NA	NA	NA
WP_010930031.1|864849_865956_+	efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
WP_010930030.1|865968_869082_+	MexW/MexI family multidrug efflux RND transporter permease subunit	NA	S5VTK5	Leptospira_phage	21.5	4.5e-57
WP_010930029.1|869078_870572_+	efflux transporter outer membrane subunit	NA	NA	NA	NA	NA
WP_010926969.1|870586_871258_+	transcriptional regulator	NA	NA	NA	NA	NA
WP_003813974.1|871301_871796_-	azurin	NA	NA	NA	NA	NA
WP_010930027.1|871936_872584_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_023853163.1|872687_874736_+	hydantoinase/oxoprolinase family protein	NA	NA	NA	NA	NA
WP_010930025.1|874732_876745_+	hydantoinase B/oxoprolinase family protein	NA	NA	NA	NA	NA
WP_010930024.1|876770_878105_+	FAD-binding oxidoreductase	NA	NA	NA	NA	NA
WP_003813981.1|878213_879206_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003813982.1|879272_881357_-	rhodanese-like domain-containing protein	NA	NA	NA	NA	NA
WP_010930023.1|881381_882353_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930022.1|882481_883513_-	succinylglutamate desuccinylase/aspartoacylase family protein	NA	NA	NA	NA	NA
WP_010930021.1|883516_884668_-	cystathionine beta-lyase	NA	NA	NA	NA	NA
WP_076879542.1|884838_885762_+	transcriptional regulator LrhA	NA	NA	NA	NA	NA
WP_003813987.1|885839_886664_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_023994644.1|886860_887877_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003813988.1|888073_889057_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930019.1|890655_892044_-	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_003813991.1|892074_893064_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003813992.1|893174_894407_-	methylaspartate ammonia-lyase	NA	NA	NA	NA	NA
WP_003813993.1|894688_895489_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930018.1|895511_897743_-|holin	choline BCCT transporter BetT	holin	NA	NA	NA	NA
WP_010930017.1|898530_898977_-	preprotein translocase subunit SecG	NA	NA	NA	NA	NA
WP_003813996.1|898998_899745_-	triose-phosphate isomerase	NA	NA	NA	NA	NA
WP_003813997.1|899888_900866_-	NAD(P)H-quinone oxidoreductase	NA	NA	NA	NA	NA
WP_010930016.1|901499_902111_+	PIN domain-containing protein	NA	K4HZX4	Acidithiobacillus_phage	32.5	3.3e-12
WP_003813999.1|902104_903322_-	threonine ammonia-lyase	NA	NA	NA	NA	NA
WP_005013747.1|903462_904413_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 11
NZ_CP010838	Bordetella pertussis strain H374 chromosome, complete genome	4107437	914025	978965	4107437	transposase	Bacillus_phage(18.18%)	58	NA	NA
WP_005012067.1|914025_914976_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930051.1|914972_916805_-	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	26.4	1.3e-27
WP_010930052.1|917203_917863_+	thiopurine S-methyltransferase	NA	NA	NA	NA	NA
WP_023852837.1|917956_918103_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003809770.1|918211_918379_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930054.1|918390_919071_-	DUF3313 domain-containing protein	NA	NA	NA	NA	NA
WP_010930055.1|919352_920069_+	flagellar brake protein	NA	NA	NA	NA	NA
WP_010930056.1|920083_921385_-	phospholipase A	NA	NA	NA	NA	NA
WP_029444137.1|923529_926418_+	HD domain-containing protein	NA	NA	NA	NA	NA
WP_010930057.1|926641_927994_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_004568140.1|928022_928544_+	acetyl-CoA carboxylase biotin carboxyl carrier protein	NA	NA	NA	NA	NA
WP_003819989.1|928540_929995_+	carboxylase	NA	NA	NA	NA	NA
WP_023852826.1|930029_930278_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247557.1|930383_931259_+	amidohydrolase	NA	NA	NA	NA	NA
WP_010930060.1|931284_932340_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930061.1|932352_933144_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930062.1|933176_934547_+	acetyl-CoA carboxylase biotin carboxylase subunit	NA	NA	NA	NA	NA
WP_010929591.1|935723_936674_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930064.1|936726_936948_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003810832.1|937107_937320_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003810835.1|937439_938558_+	mannose-6-phosphate isomerase	NA	NA	NA	NA	NA
WP_003810839.1|939063_939315_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930066.1|939427_940378_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003810840.1|940374_940758_-	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA	NA
WP_023852913.1|940812_942627_-	ABC transporter ATP-binding protein/permease	NA	W8CYL7	Bacillus_phage	27.9	5.7e-44
WP_010930068.1|942776_943604_+	aldo/keto reductase	NA	A0A2H4PQR8	Staphylococcus_phage	47.4	1.7e-67
WP_010930069.1|943649_944630_+	aldo/keto reductase	NA	NA	NA	NA	NA
WP_003810850.1|944626_944839_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003810851.1|944835_946017_-	PepSY domain-containing protein	NA	NA	NA	NA	NA
WP_019248496.1|946180_946915_+	metallophosphoesterase	NA	A0A2H4J0P0	uncultured_Caudovirales_phage	49.2	1.9e-62
WP_010930071.1|946916_949529_-	PBP1A family penicillin-binding protein	NA	NA	NA	NA	NA
WP_003810859.1|949664_951578_-	S9 family peptidase	NA	NA	NA	NA	NA
WP_010930072.1|952193_952604_-	PaaI family thioesterase	NA	NA	NA	NA	NA
WP_003810865.1|952701_953787_+	DNA polymerase IV	NA	NA	NA	NA	NA
WP_005012067.1|953885_954836_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930088.1|954832_955807_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003821497.1|955931_956843_+	LysR family transcriptional regulator	NA	Q6JIH3	Burkholderia_virus	27.6	4.4e-05
WP_004566317.1|957119_957512_-	type II toxin-antitoxin system HicB family antitoxin	NA	A0A0R6PJ17	Moraxella_phage	45.0	4.8e-25
WP_005012808.1|957641_958592_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930090.1|958621_958804_-	type II toxin-antitoxin system HicA family toxin	NA	A0A1L2JY37	Aeribacillus_phage	56.1	3.7e-12
WP_010930091.1|959576_960758_-	MFS transporter	NA	NA	NA	NA	NA
WP_010930092.1|960973_961651_-	HAD-IA family hydrolase	NA	NA	NA	NA	NA
WP_010930093.1|961647_962373_-	bifunctional 3-demethylubiquinone 3-O-methyltransferase/2-octaprenyl-6-hydroxy phenol methylase	NA	NA	NA	NA	NA
WP_010930094.1|962498_963080_-	OmpA family protein	NA	NA	NA	NA	NA
WP_010930095.1|963450_966132_+	DNA gyrase subunit A	NA	G3M9Z5	Bacillus_virus	33.5	3.2e-104
WP_010930096.1|966131_967265_+	3-phosphoserine/phosphohydroxythreonine transaminase	NA	M1Q1P2	Streptococcus_phage	44.0	6.4e-78
WP_010930097.1|967257_968343_+	prephenate dehydratase	NA	NA	NA	NA	NA
WP_010930098.1|968429_969329_+	prephenate dehydrogenase/arogenate dehydrogenase family protein	NA	NA	NA	NA	NA
WP_010930099.1|969325_970654_+	3-phosphoshikimate 1-carboxyvinyltransferase	NA	NA	NA	NA	NA
WP_010930100.1|970668_971340_+	(d)CMP kinase	NA	NA	NA	NA	NA
WP_010930101.1|971527_973243_+	30S ribosomal protein S1	NA	NA	NA	NA	NA
WP_010930102.1|973244_973604_+	integration host factor subunit beta	NA	NA	NA	NA	NA
WP_010930103.1|973795_974110_+	DUF1049 domain-containing protein	NA	NA	NA	NA	NA
WP_010930104.1|974152_975373_+	lipopolysaccharide assembly protein LapB	NA	NA	NA	NA	NA
WP_010930105.1|975369_976311_+	D-glycero-beta-D-manno-heptose-7-phosphate kinase	NA	A0A2H4N7X4	Lake_Baikal_phage	28.1	1.5e-16
WP_003821513.1|976307_977297_+	ADP-glyceromanno-heptose 6-epimerase	NA	E3SJ87	Synechococcus_phage	34.4	2.2e-26
WP_033446303.1|977331_977916_+	helix-hairpin-helix domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|978014_978965_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 12
NZ_CP010838	Bordetella pertussis strain H374 chromosome, complete genome	4107437	998365	1061516	4107437	transposase	Enterococcus_phage(16.67%)	54	NA	NA
WP_005012067.1|998365_999316_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930118.1|999420_1000470_+	NADP(H)-dependent aldo-keto reductase	NA	NA	NA	NA	NA
WP_010929632.1|1000607_1001624_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010926548.1|1003132_1003705_-	chorismate lyase	NA	NA	NA	NA	NA
WP_010930119.1|1003764_1004496_+	rRNA pseudouridine synthase	NA	NA	NA	NA	NA
WP_029443805.1|1004547_1005465_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930121.1|1006272_1009452_+	efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_014486063.1|1009448_1010831_+	efflux transporter outer membrane subunit	NA	NA	NA	NA	NA
WP_010930123.1|1010900_1011152_-	GlsB/YeaQ/YmgE family stress response membrane protein	NA	NA	NA	NA	NA
WP_010930124.1|1011297_1011912_-	SCO family protein	NA	NA	NA	NA	NA
WP_019248379.1|1012098_1014213_-	M3 family metallopeptidase	NA	NA	NA	NA	NA
WP_003811948.1|1014288_1015140_-	bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD	NA	A0A249XZQ2	Enterococcus_phage	39.8	2.1e-33
WP_010930126.1|1015136_1015763_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_003817147.1|1015759_1017514_-	PAS domain S-box protein	NA	NA	NA	NA	NA
WP_010930127.1|1017806_1020512_+	pyruvate dehydrogenase (acetyl-transferring), homodimeric type	NA	NA	NA	NA	NA
WP_010930128.1|1020524_1022186_+	dihydrolipoyllysine-residue acetyltransferase	NA	NA	NA	NA	NA
WP_010930129.1|1022198_1023989_+	dihydrolipoyl dehydrogenase	NA	A0A2K5B2C5	Erysipelothrix_phage	25.2	2.4e-39
WP_003817151.1|1024210_1025386_-	FliC/FljB family flagellin	NA	NA	NA	NA	NA
WP_010929584.1|1025428_1026379_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930130.1|1026477_1027218_-	16S rRNA (uracil(1498)-N(3))-methyltransferase	NA	NA	NA	NA	NA
WP_010930131.1|1027412_1029449_+	transketolase	NA	NA	NA	NA	NA
WP_010930132.1|1029466_1030477_+	type I glyceraldehyde-3-phosphate dehydrogenase	NA	NA	NA	NA	NA
WP_010930133.1|1030594_1031788_+	phosphoglycerate kinase	NA	NA	NA	NA	NA
WP_010930134.1|1031817_1032591_-	enoyl-ACP reductase FabI	NA	NA	NA	NA	NA
WP_010930135.1|1032587_1033778_-	acetate kinase	NA	NA	NA	NA	NA
WP_003809454.1|1033803_1034742_-	phosphate acetyltransferase	NA	NA	NA	NA	NA
WP_010930136.1|1034738_1037087_-	DUF3141 domain-containing protein	NA	NA	NA	NA	NA
WP_010930137.1|1037241_1037883_-	glutathione transferase	NA	NA	NA	NA	NA
WP_023853531.1|1037986_1039120_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994624.1|1039212_1039365_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930138.1|1039396_1039945_-	DinB family protein	NA	NA	NA	NA	NA
WP_003819814.1|1039963_1040449_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_010930139.1|1040626_1041565_+	DnaJ domain-containing protein	NA	A0A0P0YMJ9	Yellowstone_lake_phycodnavirus	24.1	5.6e-11
WP_003809467.1|1041567_1041885_+	MerR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247197.1|1041930_1042875_+	AzlC family ABC transporter permease	NA	NA	NA	NA	NA
WP_010930141.1|1044555_1045206_+	molybdopterin adenylyltransferase	NA	NA	NA	NA	NA
WP_003809479.1|1045259_1045595_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930142.1|1045591_1046452_+	M23 family metallopeptidase	NA	A0A292GJG6	Xanthomonas_phage	36.1	2.6e-15
WP_003819817.1|1046468_1046750_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003809486.1|1046823_1047087_-	translation initiation factor IF-1	NA	NA	NA	NA	NA
WP_005012067.1|1047330_1048281_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811933.1|1048579_1049317_-	RNA polymerase sigma factor FliA	NA	NA	NA	NA	NA
WP_010930143.1|1049752_1050076_+	flagellar transcriptional regulator FlhD	NA	NA	NA	NA	NA
WP_003811929.1|1050110_1050671_+	flagellar transcriptional regulator FlhC	NA	NA	NA	NA	NA
WP_003811927.1|1050791_1051667_+	flagellar motor stator protein MotA	NA	NA	NA	NA	NA
WP_003817154.1|1051679_1052627_+	flagellar motor protein MotB	NA	NA	NA	NA	NA
WP_019247393.1|1052728_1053022_+	response regulator	NA	NA	NA	NA	NA
WP_010930144.1|1053048_1055106_+	chemotaxis protein CheA	NA	NA	NA	NA	NA
WP_003811919.1|1055120_1055621_+	chemotaxis protein CheW	NA	NA	NA	NA	NA
WP_010930145.1|1055694_1057401_+	Tar ligand binding domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	41.7	1.4e-12
WP_010930146.1|1058264_1059317_+	chemotaxis response regulator protein-glutamate methylesterase	NA	NA	NA	NA	NA
WP_003811911.1|1059369_1059759_+	chemotaxis response regulator CheY	NA	Q56AR1	Bacillus_thuringiensis_phage	33.3	5.7e-10
WP_003817162.1|1059767_1060400_+	protein phosphatase CheZ	NA	NA	NA	NA	NA
WP_010931363.1|1060499_1061516_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
>prophage 13
NZ_CP010838	Bordetella pertussis strain H374 chromosome, complete genome	4107437	1067500	1127563	4107437	tRNA,holin,protease,transposase	uncultured_Mediterranean_phage(37.5%)	51	NA	NA
WP_015041211.1|1067500_1068928_-|tRNA	tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB	tRNA	NA	NA	NA	NA
WP_010931363.1|1069865_1070882_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003809411.1|1071214_1072150_-	protein translocase subunit SecF	NA	A0A1B1IVP7	uncultured_Mediterranean_phage	35.5	3.0e-41
WP_010930154.1|1072199_1074080_-	protein translocase subunit SecD	NA	NA	NA	NA	NA
WP_003809416.1|1074146_1074491_-	preprotein translocase subunit YajC	NA	A0A1B1IVR5	uncultured_Mediterranean_phage	40.4	1.0e-10
WP_010930155.1|1074635_1075772_-|tRNA	tRNA guanosine(34) transglycosylase Tgt	tRNA	A0A1B1IVQ4	uncultured_Mediterranean_phage	44.4	1.9e-85
WP_023853534.1|1075768_1076842_-|tRNA	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	tRNA	NA	NA	NA	NA
WP_003809423.1|1076999_1078436_+	D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase	NA	NA	NA	NA	NA
WP_010930157.1|1078526_1079168_+	uracil phosphoribosyltransferase	NA	NA	NA	NA	NA
WP_023853536.1|1079503_1080520_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_019248433.1|1080852_1083600_+	pertactin autotransporter	NA	NA	NA	NA	NA
WP_010930160.1|1083666_1085088_-	uroporphyrinogen-III C-methyltransferase	NA	NA	NA	NA	NA
WP_003809431.1|1085351_1086068_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003809432.1|1086152_1086470_+	DUF883 domain-containing protein	NA	NA	NA	NA	NA
WP_003819794.1|1086510_1086924_+|holin	phage holin family protein	holin	NA	NA	NA	NA
WP_010930161.1|1086925_1087285_+	hypothetical protein	NA	NA	NA	NA	NA
WP_023853525.1|1087327_1088872_-	4-hydroxy-3-polyprenylbenzoate decarboxylase	NA	NA	NA	NA	NA
WP_010930163.1|1088955_1089786_+	lytic transglycosylase domain-containing protein	NA	NA	NA	NA	NA
WP_010930164.1|1089820_1090975_-	pyridoxal phosphate-dependent aminotransferase	NA	NA	NA	NA	NA
WP_010930165.1|1091017_1091890_+	hypothetical protein	NA	NA	NA	NA	NA
WP_014486065.1|1092006_1094295_+	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
WP_003809441.1|1095501_1095966_+	barstar family protein	NA	NA	NA	NA	NA
WP_005013747.1|1095992_1096943_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|1097041_1097992_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_154698393.1|1098009_1098147_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930167.1|1098359_1099136_-	phosphate ABC transporter ATP-binding protein PstB	NA	G9BWD6	Planktothrix_phage	28.7	4.3e-17
WP_003809638.1|1099180_1100038_-	phosphate ABC transporter permease PstA	NA	NA	NA	NA	NA
WP_010930169.1|1100059_1101076_-	phosphate ABC transporter permease subunit PstC	NA	NA	NA	NA	NA
WP_014486066.1|1101210_1102251_-	phosphate ABC transporter substrate-binding protein PstS	NA	M4QHS4	Cyanophage	40.2	2.1e-51
WP_010930171.1|1102445_1104527_-	polyphosphate kinase 1	NA	NA	NA	NA	NA
WP_010930172.1|1104762_1106256_+	exopolyphosphatase	NA	NA	NA	NA	NA
WP_003809629.1|1106486_1107281_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_003819875.1|1107501_1108860_-	phosphoglucosamine mutase	NA	NA	NA	NA	NA
WP_010930173.1|1108856_1109699_-	dihydropteroate synthase	NA	A0A0B5J4J5	Pandoravirus	32.5	3.2e-26
WP_010930174.1|1109717_1111604_-|protease	ATP-dependent zinc metalloprotease FtsH	protease	M4QMW8	Micromonas_pusilla_virus	41.5	1.4e-109
WP_162096758.1|1111545_1111797_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930175.1|1111841_1112474_-	RlmE family RNA methyltransferase	NA	NA	NA	NA	NA
WP_003809618.1|1112492_1113095_+	YhbY family RNA-binding protein	NA	NA	NA	NA	NA
WP_005012067.1|1113246_1114197_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_161633091.1|1114777_1115485_+	DUF192 domain-containing protein	NA	NA	NA	NA	NA
WP_003812707.1|1115843_1116830_-	homoserine kinase	NA	NA	NA	NA	NA
WP_010930178.1|1116969_1117983_+|tRNA	tRNA dihydrouridine(20/20a) synthase DusA	tRNA	NA	NA	NA	NA
WP_005012067.1|1117979_1118930_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_155120815.1|1118947_1119088_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003812703.1|1119042_1119501_-	CBS domain-containing protein	NA	NA	NA	NA	NA
WP_003812701.1|1119537_1120851_-	YihY family inner membrane protein	NA	NA	NA	NA	NA
WP_010930180.1|1120868_1121240_+	DUF2069 domain-containing protein	NA	NA	NA	NA	NA
WP_019248549.1|1121236_1122700_+	YdiU family protein	NA	A0A075BSJ0	Microcystis_phage	32.5	1.7e-43
WP_010930182.1|1122840_1123569_+	response regulator transcription factor	NA	NA	NA	NA	NA
WP_010930183.1|1123550_1126400_-	EAL domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|1126612_1127563_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 14
NZ_CP010838	Bordetella pertussis strain H374 chromosome, complete genome	4107437	1319000	1387487	4107437	transposase	Planktothrix_phage(33.33%)	58	NA	NA
WP_005012808.1|1319000_1319951_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930283.1|1320719_1321358_-	glutathione S-transferase	NA	NA	NA	NA	NA
WP_019247793.1|1322247_1322694_+	aspartate/glutamate racemase family protein	NA	NA	NA	NA	NA
WP_010930284.1|1322775_1323477_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.4	1.3e-17
WP_003811277.1|1323477_1324245_-	high-affinity branched-chain amino acid ABC transporter ATP-binding protein LivG	NA	A0A2H4PQG7	Staphylococcus_phage	26.4	1.2e-14
WP_010930285.1|1324241_1325480_-	high-affinity branched-chain amino acid ABC transporter permease LivM	NA	NA	NA	NA	NA
WP_003811272.1|1325479_1326406_-	high-affinity branched-chain amino acid ABC transporter permease LivH	NA	NA	NA	NA	NA
WP_010930286.1|1326508_1327624_-	branched-chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_005015810.1|1327639_1328590_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930287.1|1328943_1329525_-	queuosine precursor transporter	NA	A0A2I7SAW6	Vibrio_phage	37.3	9.4e-17
WP_003811267.1|1329521_1330355_-	pyrroline-5-carboxylate reductase	NA	NA	NA	NA	NA
WP_010930288.1|1330565_1331879_+	sn-glycerol-3-phosphate ABC transporter substrate-binding protein UgpB	NA	NA	NA	NA	NA
WP_003811262.1|1332055_1332937_+	sn-glycerol-3-phosphate ABC transporter permease UgpA	NA	NA	NA	NA	NA
WP_003811259.1|1332956_1333808_+	sn-glycerol-3-phosphate ABC transporter permease UgpE	NA	NA	NA	NA	NA
WP_010930289.1|1333860_1334949_+	sn-glycerol-3-phosphate import ATP-binding protein UgpC	NA	G9BWD6	Planktothrix_phage	31.2	2.2e-19
WP_010930290.1|1335059_1336187_-	branched-chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003811244.1|1336421_1337033_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_010929584.1|1337131_1338082_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811293.1|1338303_1338681_-	DUF423 domain-containing protein	NA	NA	NA	NA	NA
WP_003811295.1|1338828_1339326_+	DUF2384 domain-containing protein	NA	NA	NA	NA	NA
WP_010930291.1|1339322_1339850_+	RES family NAD+ phosphorylase	NA	NA	NA	NA	NA
WP_003811298.1|1339983_1340799_+	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930292.1|1340811_1341993_-	alpha-hydroxy-acid oxidizing protein	NA	NA	NA	NA	NA
WP_003811301.1|1342040_1342934_-	phosphatidylserine decarboxylase	NA	NA	NA	NA	NA
WP_010930293.1|1343060_1343531_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930294.1|1343656_1344484_-	DUF3298 domain-containing protein	NA	NA	NA	NA	NA
WP_003811306.1|1344512_1345289_-	lipoate--protein ligase family protein	NA	NA	NA	NA	NA
WP_023852802.1|1345285_1345561_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930295.1|1345575_1346040_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_010930296.1|1346051_1346753_-	glutathione S-transferase N-terminal domain-containing protein	NA	NA	NA	NA	NA
WP_003811310.1|1346862_1347363_-	glutathione peroxidase	NA	Q6VZR0	Canarypox_virus	38.4	4.7e-25
WP_010930297.1|1347445_1348624_-	DUF1501 domain-containing protein	NA	NA	NA	NA	NA
WP_003811313.1|1350251_1350587_+	tetratricopeptide repeat protein	NA	NA	NA	NA	NA
WP_010930298.1|1350774_1352223_+	CoA transferase	NA	NA	NA	NA	NA
WP_023852799.1|1352280_1352625_+	arsenate reductase (glutaredoxin)	NA	A0A2H4J8T1	uncultured_Caudovirales_phage	58.4	3.0e-31
WP_003811316.1|1352731_1353271_-	peroxiredoxin	NA	NA	NA	NA	NA
WP_005012067.1|1353363_1354314_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_162268679.1|1354331_1354571_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247530.1|1355052_1355484_-	YXWGXW repeat-containing protein	NA	NA	NA	NA	NA
WP_010930300.1|1355665_1356070_-	DoxX family protein	NA	NA	NA	NA	NA
WP_010930301.1|1357306_1357630_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247533.1|1357632_1358520_-	aldo/keto reductase	NA	NA	NA	NA	NA
WP_003811322.1|1358552_1358978_-	universal stress protein	NA	NA	NA	NA	NA
WP_019247534.1|1359049_1359403_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003811324.1|1359642_1360149_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930302.1|1360187_1361519_-	transcriptional regulator PtsJ	NA	NA	NA	NA	NA
WP_003811326.1|1361578_1362394_+	YggS family pyridoxal phosphate-dependent enzyme	NA	NA	NA	NA	NA
WP_010930303.1|1362390_1363245_+	pyridoxine/pyridoxal/pyridoxamine kinase	NA	NA	NA	NA	NA
WP_010930304.1|1366307_1368851_-	malto-oligosyltrehalose synthase	NA	NA	NA	NA	NA
WP_010930305.1|1370217_1371972_-	malto-oligosyltrehalose trehalohydrolase	NA	NA	NA	NA	NA
WP_010930306.1|1371968_1374089_-	glycogen debranching protein GlgX	NA	NA	NA	NA	NA
WP_010930307.1|1374093_1376289_-	1,4-alpha-glucan branching protein GlgB	NA	NA	NA	NA	NA
WP_010930308.1|1376285_1379627_-	maltose alpha-D-glucosyltransferase	NA	NA	NA	NA	NA
WP_010930208.1|1382429_1383380_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811361.1|1383445_1383625_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247449.1|1383741_1384497_-	alpha/beta fold hydrolase	NA	NA	NA	NA	NA
WP_010930310.1|1384483_1385629_-	DUF3182 family protein	NA	NA	NA	NA	NA
WP_010930208.1|1386536_1387487_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 15
NZ_CP010838	Bordetella pertussis strain H374 chromosome, complete genome	4107437	1447978	1503466	4107437	protease,transposase	Mollivirus(16.67%)	56	NA	NA
WP_005012067.1|1447978_1448929_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811846.1|1450130_1450577_-	flagellar export protein FliJ	NA	NA	NA	NA	NA
WP_019247562.1|1450569_1452045_-	flagellar protein export ATPase FliI	NA	NA	NA	NA	NA
WP_010930338.1|1452041_1452797_-	flagellar assembly protein FliH	NA	NA	NA	NA	NA
WP_003817203.1|1452789_1453800_-	flagellar motor switch protein FliG	NA	NA	NA	NA	NA
WP_010930339.1|1453789_1455466_-	flagellar M-ring protein FliF	NA	NA	NA	NA	NA
WP_010930340.1|1455778_1456111_+	flagellar hook-basal body complex protein FliE	NA	NA	NA	NA	NA
WP_010930341.1|1456124_1456520_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930342.1|1456529_1456856_-	EscU/YscU/HrcU family type III secretion system export apparatus switch protein	NA	NA	NA	NA	NA
WP_019247563.1|1456852_1457179_-	flagellar hook-length control protein FliK	NA	NA	NA	NA	NA
WP_023994685.1|1457105_1458128_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930343.1|1458124_1458475_-	flagellar protein FliT	NA	NA	NA	NA	NA
WP_010930344.1|1458522_1458951_-	flagellar export chaperone FliS	NA	NA	NA	NA	NA
WP_010930345.1|1458958_1460332_-	flagellar filament capping protein FliD	NA	NA	NA	NA	NA
WP_003817216.1|1460472_1460850_-	flagellar protein FlaG	NA	NA	NA	NA	NA
WP_010930346.1|1461112_1462420_+	bifunctional tetrahydrofolate synthase/dihydrofolate synthase	NA	NA	NA	NA	NA
WP_023852965.1|1462480_1463311_+	SPOR domain-containing protein	NA	NA	NA	NA	NA
WP_003811815.1|1463307_1463796_+	CvpA family protein	NA	NA	NA	NA	NA
WP_003811814.1|1463837_1465358_+	amidophosphoribosyltransferase	NA	A0A0M3SGR2	Mollivirus	43.7	4.8e-97
WP_003811812.1|1465401_1465878_-	disulfide bond formation protein B	NA	NA	NA	NA	NA
WP_010930348.1|1466681_1469279_-	[protein-PII] uridylyltransferase	NA	NA	NA	NA	NA
WP_003811806.1|1469308_1470130_-	type I methionyl aminopeptidase	NA	NA	NA	NA	NA
WP_003811803.1|1470856_1471606_+	30S ribosomal protein S2	NA	NA	NA	NA	NA
WP_010926570.1|1471789_1472668_+	elongation factor Ts	NA	NA	NA	NA	NA
WP_010930349.1|1472765_1473482_+	UMP kinase	NA	NA	NA	NA	NA
WP_003811796.1|1473496_1474057_+	ribosome recycling factor	NA	NA	NA	NA	NA
WP_010930350.1|1474223_1474988_+	di-trans,poly-cis-decaprenylcistransferase	NA	R9W0U9	Flavobacterium_phage	36.1	1.7e-18
WP_010930351.1|1475007_1475865_+	phosphatidate cytidylyltransferase	NA	NA	NA	NA	NA
WP_003811788.1|1475861_1477061_+	1-deoxy-D-xylulose-5-phosphate reductoisomerase	NA	NA	NA	NA	NA
WP_010930352.1|1477100_1478435_+|protease	RIP metalloprotease RseP	protease	NA	NA	NA	NA
WP_010930353.1|1478487_1480824_+	outer membrane protein assembly factor BamA	NA	NA	NA	NA	NA
WP_003811782.1|1480949_1481513_+	OmpH family outer membrane protein	NA	NA	NA	NA	NA
WP_010930354.1|1481521_1482613_+	UDP-3-O-(3-hydroxymyristoyl)glucosamine N-acyltransferase	NA	NA	NA	NA	NA
WP_003811776.1|1482684_1483140_+	3-hydroxyacyl-ACP dehydratase FabZ	NA	NA	NA	NA	NA
WP_010930355.1|1483140_1483935_+	acyl-ACP--UDP-N-acetylglucosamine O-acyltransferase	NA	NA	NA	NA	NA
WP_010930356.1|1483931_1485113_+	lipid-A-disaccharide synthase	NA	NA	NA	NA	NA
WP_003811770.1|1485099_1485705_+	ribonuclease HII	NA	G9E3X7	Emiliania_huxleyi_virus	40.2	8.8e-26
WP_003811768.1|1485701_1486475_+	RNA methyltransferase	NA	NA	NA	NA	NA
WP_010930357.1|1486486_1487314_-	kinase/pyrophosphorylase	NA	NA	NA	NA	NA
WP_010930358.1|1487475_1489839_+	phosphoenolpyruvate synthase	NA	A0A1V0SGR7	Hokovirus	35.9	2.2e-165
WP_010930359.1|1489906_1490626_-	glutamine amidotransferase	NA	NA	NA	NA	NA
WP_003811761.1|1490749_1491175_+	NfeD family protein	NA	NA	NA	NA	NA
WP_005012067.1|1491209_1492160_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811759.1|1492277_1493204_+	paraslipin	NA	NA	NA	NA	NA
WP_010930360.1|1493269_1494427_+	GGDEF domain-containing protein	NA	A0A127AWB9	Bacillus_phage	36.2	2.3e-14
WP_003811754.1|1494407_1494875_-	SsrA-binding protein SmpB	NA	W5RAM5	Staphylococcus_phage	45.1	6.2e-27
WP_010930800.1|1495022_1495973_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811752.1|1495989_1496424_+	type II toxin-antitoxin system RatA family toxin	NA	NA	NA	NA	NA
WP_003811750.1|1496413_1496764_+	RnfH family protein	NA	NA	NA	NA	NA
WP_003811748.1|1496960_1498115_+	acyl-CoA dehydrogenase family protein	NA	NA	NA	NA	NA
WP_003811746.1|1498111_1499284_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003811743.1|1499331_1500225_+	3-hydroxyisobutyrate dehydrogenase	NA	NA	NA	NA	NA
WP_003811741.1|1500270_1500708_+	PaaI family thioesterase	NA	NA	NA	NA	NA
WP_010930362.1|1500767_1501457_+	VIT family protein	NA	NA	NA	NA	NA
WP_010930363.1|1501466_1502417_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_076879624.1|1502515_1503466_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 16
NZ_CP010838	Bordetella pertussis strain H374 chromosome, complete genome	4107437	1598158	1666244	4107437	tRNA,transposase	Streptococcus_virus(11.11%)	59	NA	NA
WP_010930416.1|1598158_1598647_+|tRNA	Cys-tRNA(Pro) deacylase	tRNA	NA	NA	NA	NA
WP_019248504.1|1598764_1599343_+	DJ-1/PfpI family protein	NA	NA	NA	NA	NA
WP_010930418.1|1599448_1599817_+	ribbon-helix-helix domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|1599915_1600866_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994932.1|1600872_1601985_-	D-alanyl-D-alanine endopeptidase	NA	NA	NA	NA	NA
WP_010930419.1|1602671_1603874_+	MFS transporter	NA	NA	NA	NA	NA
WP_004568212.1|1603909_1604056_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930420.1|1604077_1606738_+	PD-(D/E)XK nuclease family protein	NA	NA	NA	NA	NA
WP_010930421.1|1606750_1610155_+	UvrD-helicase domain-containing protein	NA	NA	NA	NA	NA
WP_023995689.1|1610822_1613048_+	DNA polymerase III subunit gamma/tau	NA	A0A1U9WR94	Streptococcus_virus	38.5	1.2e-43
WP_010930423.1|1613094_1613421_+	YbaB/EbfC family nucleoid-associated protein	NA	NA	NA	NA	NA
WP_010930424.1|1613471_1614080_+	recombination protein RecR	NA	NA	NA	NA	NA
WP_005013747.1|1614178_1615129_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930425.1|1615198_1615963_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930426.1|1615959_1616559_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930427.1|1616662_1617514_-	neutral zinc metallopeptidase	NA	A0A1I9SA48	Rhodococcus_phage	35.3	7.0e-37
WP_010928449.1|1617573_1618200_+	threonylcarbamoyl-AMP synthase	NA	NA	NA	NA	NA
WP_005012067.1|1618196_1619147_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019249265.1|1619245_1620358_-	DUF1513 domain-containing protein	NA	NA	NA	NA	NA
WP_019248041.1|1620347_1621349_-	imelysin family protein	NA	NA	NA	NA	NA
WP_019247498.1|1621454_1622966_-	c-type cytochrome	NA	NA	NA	NA	NA
WP_023853587.1|1622962_1624267_-	imelysin	NA	NA	NA	NA	NA
WP_010930431.1|1624378_1624939_-	membrane protein	NA	NA	NA	NA	NA
WP_010930432.1|1625206_1625761_+	NAD(P)H-dependent oxidoreductase	NA	A0A2P0ZL82	Lactobacillus_phage	32.0	1.7e-15
WP_010930433.1|1626216_1626432_-	dodecin domain-containing protein	NA	NA	NA	NA	NA
WP_033446228.1|1626686_1629284_+	DNA mismatch repair protein MutS	NA	A0A1V0SDQ0	Indivirus	22.6	1.5e-21
WP_010930435.1|1629280_1630468_+	cupin domain-containing protein	NA	NA	NA	NA	NA
WP_010930436.1|1631126_1631741_+	serotype 3 fimbrial subunit	NA	NA	NA	NA	NA
WP_010930437.1|1631829_1632957_-	outer membrane protein assembly factor BamC	NA	NA	NA	NA	NA
WP_033446216.1|1632968_1633874_-	4-hydroxy-tetrahydrodipicolinate synthase	NA	NA	NA	NA	NA
WP_005012067.1|1634766_1635717_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930439.1|1635898_1636651_+	glutamine ABC transporter substrate-binding protein GlnH	NA	NA	NA	NA	NA
WP_003811112.1|1636719_1637379_+	glutamine ABC transporter permease GlnP	NA	NA	NA	NA	NA
WP_003811113.1|1637375_1638104_+	glutamine ABC transporter ATP-binding protein GlnQ	NA	G9BWD6	Planktothrix_phage	39.3	3.3e-35
WP_010930440.1|1638116_1640396_-	bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase	NA	A0A1B1IUF0	uncultured_Mediterranean_phage	32.1	5.9e-06
WP_010930441.1|1640420_1640624_-	DNA-directed RNA polymerase subunit omega	NA	NA	NA	NA	NA
WP_010930442.1|1640665_1641298_-	guanylate kinase	NA	A0A218KC48	Bacillus_phage	33.9	2.4e-13
WP_010930443.1|1641433_1642351_-	c-type cytochrome	NA	NA	NA	NA	NA
WP_010930444.1|1642347_1643061_-	c-type cytochrome	NA	NA	NA	NA	NA
WP_003811135.1|1643298_1644069_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_003811137.1|1644073_1644673_-	C40 family peptidase	NA	A0A0A8WF62	Clostridium_phage	41.6	1.4e-20
WP_003811138.1|1644917_1646408_+	AMP nucleosidase	NA	NA	NA	NA	NA
WP_010926696.1|1646466_1646751_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010930445.1|1646888_1647044_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003811148.1|1647316_1648243_-	YicC family protein	NA	NA	NA	NA	NA
WP_003811149.1|1648379_1649120_+	ribonuclease PH	NA	NA	NA	NA	NA
WP_010930446.1|1649286_1650663_-	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_003811152.1|1650844_1651750_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930448.1|1653401_1655204_-	EAL domain-containing protein	NA	NA	NA	NA	NA
WP_010930449.1|1655330_1655972_+	RdgB/HAM1 family non-canonical purine NTP pyrophosphatase	NA	NA	NA	NA	NA
WP_005012808.1|1656070_1657021_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930450.1|1657042_1658263_+	oxygen-independent coproporphyrinogen III oxidase-like protein	NA	NA	NA	NA	NA
WP_003811164.1|1658448_1659861_+	type I glutamate--ammonia ligase	NA	NA	NA	NA	NA
WP_003811167.1|1659924_1660992_+	PAS domain-containing protein	NA	Q8QKV7	Ectocarpus_siliculosus_virus	23.5	1.1e-05
WP_010930451.1|1660991_1662479_+	nitrogen regulation protein NR(I)	NA	NA	NA	NA	NA
WP_010930452.1|1662488_1663433_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811176.1|1663592_1664291_+	pirin family protein	NA	NA	NA	NA	NA
WP_010930453.1|1664368_1665274_+	pirin family protein	NA	NA	NA	NA	NA
WP_005012067.1|1665293_1666244_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 17
NZ_CP010838	Bordetella pertussis strain H374 chromosome, complete genome	4107437	1675731	1729322	4107437	transposase	Lactobacillus_phage(14.29%)	42	NA	NA
WP_005012808.1|1675731_1676682_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930458.1|1677889_1678276_+	reactive intermediate/imine deaminase	NA	NA	NA	NA	NA
WP_033446218.1|1678291_1680382_+	ATP-dependent DNA helicase RecG	NA	NA	NA	NA	NA
WP_003811203.1|1680433_1681387_+	LysR family transcriptional regulator	NA	A0A2P0ZL89	Lactobacillus_phage	26.5	7.2e-14
WP_062826527.1|1681401_1682289_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930461.1|1682426_1683953_+	CoA-acylating methylmalonate-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
WP_003811209.1|1684051_1684552_+	DNA starvation/stationary phase protection protein	NA	W5S6G8	Pithovirus	35.5	6.4e-14
WP_019247170.1|1684875_1686831_-	capsular polysaccharide biosynthesis protein	NA	NA	NA	NA	NA
WP_010930464.1|1686998_1689083_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930465.1|1689109_1689895_-	glycosyltransferase family 2 protein	NA	A0A1V0SAH6	Catovirus	32.0	1.1e-12
WP_019247171.1|1690258_1690426_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930466.1|1690750_1691521_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_014486073.1|1691520_1692261_+	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
WP_010930468.1|1692302_1693472_+	capsule polysaccharide transporter	NA	NA	NA	NA	NA
WP_010930469.1|1693503_1695588_+	glycosyltransferase	NA	NA	NA	NA	NA
WP_003811224.1|1695584_1696475_+	capsular polysaccharide biosynthesis protein	NA	NA	NA	NA	NA
WP_010930470.1|1696471_1697569_+	capsular polysaccharide export protein	NA	NA	NA	NA	NA
WP_010930471.1|1697591_1698881_+	Vi polysaccharide biosynthesis UDP-N-acetylglucosamine C-6 dehydrogenase TviB	NA	NA	NA	NA	NA
WP_010930472.1|1698892_1699918_+	Vi polysaccharide biosynthesis UDP-N-acetylglucosaminuronic acid C-4 epimerase TviC	NA	A0A2K9L4U8	Tupanvirus	44.2	4.7e-72
WP_010930473.1|1699914_1701972_+	capsular polysaccharide biosynthesis protein	NA	NA	NA	NA	NA
WP_023852812.1|1701985_1703161_+	capsular biosynthesis protein	NA	NA	NA	NA	NA
WP_005013747.1|1703242_1704193_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930486.1|1704251_1705025_+	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_014486074.1|1705017_1706574_+	LTA synthase family protein	NA	NA	NA	NA	NA
WP_005013747.1|1706570_1707521_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|1708293_1709244_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003810741.1|1709896_1710499_-	TetR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003810743.1|1710738_1711440_-	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
WP_003816696.1|1711433_1712216_-	ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	25.8	2.0e-09
WP_005012808.1|1712400_1713351_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930483.1|1713449_1714187_-	TerC family protein	NA	A0A0S4KZH7	Pseudomonas_phage	46.6	4.1e-41
WP_010926609.1|1714376_1715135_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930482.1|1715181_1716171_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930481.1|1716348_1717317_-	transporter	NA	NA	NA	NA	NA
WP_010930480.1|1718856_1719825_+	AAA family ATPase	NA	NA	NA	NA	NA
WP_010930479.1|1719833_1720775_+	DUF58 domain-containing protein	NA	NA	NA	NA	NA
WP_010930478.1|1721248_1722259_+	VWA domain-containing protein	NA	NA	NA	NA	NA
WP_010930477.1|1722249_1723764_+	VWA domain-containing protein	NA	NA	NA	NA	NA
WP_010930476.1|1723760_1725107_+	BatD family protein	NA	NA	NA	NA	NA
WP_010930475.1|1725109_1726144_+	haloacid dehalogenase-like hydrolase	NA	NA	NA	NA	NA
WP_023852967.1|1726193_1727819_+	arylsulfatase	NA	A0A2P0VMN7	Tetraselmis_virus	52.2	2.0e-149
WP_005012067.1|1728371_1729322_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 18
NZ_CP010838	Bordetella pertussis strain H374 chromosome, complete genome	4107437	1750113	1811461	4107437	tRNA,transposase	uncultured_Caudovirales_phage(12.5%)	52	NA	NA
WP_005013747.1|1750113_1751064_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_170954298.1|1751357_1752095_-	arsenical resistance protein ArsH	NA	A0A2H4J5V6	uncultured_Caudovirales_phage	68.2	1.3e-87
WP_010930504.1|1752518_1753706_-	MFS transporter	NA	NA	NA	NA	NA
WP_019249653.1|1753709_1754090_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010930506.1|1755809_1756781_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930507.1|1756794_1757508_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930508.1|1757512_1758430_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811452.1|1758536_1758833_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929588.1|1758931_1759882_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930509.1|1761040_1763974_+	monovalent cation/H+ antiporter subunit A	NA	NA	NA	NA	NA
WP_003810969.1|1763973_1764318_+	Na+/H+ antiporter subunit C	NA	NA	NA	NA	NA
WP_004568496.1|1764314_1765943_+	monovalent cation/H+ antiporter subunit D	NA	NA	NA	NA	NA
WP_010930510.1|1765939_1766419_+	Na+/H+ antiporter subunit E	NA	NA	NA	NA	NA
WP_003810975.1|1766415_1766700_+	K+/H+ antiporter subunit F	NA	NA	NA	NA	NA
WP_010930511.1|1766696_1767023_+	cation:proton antiporter	NA	NA	NA	NA	NA
WP_005013747.1|1767178_1768129_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247780.1|1768172_1768715_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930513.1|1768812_1769661_+	haloacid dehalogenase-like hydrolase	NA	NA	NA	NA	NA
WP_004568494.1|1769653_1770160_+|tRNA	tRNA adenosine(34) deaminase TadA	tRNA	S4VYT2	Pandoravirus	38.4	3.4e-07
WP_010930515.1|1770156_1771158_+	muramoyltetrapeptide carboxypeptidase	NA	NA	NA	NA	NA
WP_010930516.1|1771170_1771965_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010930517.1|1772013_1773915_-	TRAP transporter large permease subunit	NA	NA	NA	NA	NA
WP_003810992.1|1773911_1774535_-	TRAP transporter small permease subunit	NA	NA	NA	NA	NA
WP_003816541.1|1774661_1775786_-	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930518.1|1776166_1777771_+	ABC-F family ATPase	NA	A0A1V0SKJ1	Klosneuvirus	28.9	1.2e-53
WP_010930519.1|1777926_1778703_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	34.2	1.2e-30
WP_010930520.1|1778787_1779786_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930521.1|1779782_1780556_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_014905945.1|1781540_1782491_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003810867.1|1782514_1782979_-	GatB/YqeY domain-containing protein	NA	A0A0K2FLI9	Brevibacillus_phage	32.4	3.9e-05
WP_010930799.1|1783125_1784334_+	NO-inducible flavohemoprotein	NA	NA	NA	NA	NA
WP_010930798.1|1784377_1784815_+	Rrf2 family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930797.1|1784933_1786223_+	D-amino acid dehydrogenase	NA	NA	NA	NA	NA
WP_005012067.1|1788963_1789914_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930595.1|1790012_1791029_-	folate-binding protein YgfZ	NA	NA	NA	NA	NA
WP_010930596.1|1791207_1792242_+	endolytic transglycosylase MltG	NA	NA	NA	NA	NA
WP_003811733.1|1792238_1792865_+	dTMP kinase	NA	A0A1L2BX49	Bacteriophage	35.1	1.6e-22
WP_010930597.1|1792861_1793914_+	DNA polymerase III subunit delta'	NA	NA	NA	NA	NA
WP_010930598.1|1793963_1794734_+	TatD family hydrolase	NA	NA	NA	NA	NA
WP_010930599.1|1794784_1795621_+	ankyrin repeat domain-containing protein	NA	NA	NA	NA	NA
WP_010930600.1|1795816_1796557_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930601.1|1796631_1797375_+	glutamine ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_020699606.1|1798051_1798810_+	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	37.9	6.7e-31
WP_003811716.1|1799947_1801237_+	Glu/Leu/Phe/Val dehydrogenase	NA	NA	NA	NA	NA
WP_010930602.1|1802847_1804095_-	Zn-dependent hydrolase	NA	NA	NA	NA	NA
WP_010930603.1|1804104_1805814_-	thiamine pyrophosphate-binding protein	NA	A0A0P0YLY7	Yellowstone_lake_phycodnavirus	27.3	5.9e-35
WP_003811709.1|1805810_1806749_-	citrate lyase subunit beta	NA	NA	NA	NA	NA
WP_003811706.1|1806745_1808029_-	TRAP transporter large permease	NA	NA	NA	NA	NA
WP_010930604.1|1808032_1808515_-	TRAP transporter small permease	NA	NA	NA	NA	NA
WP_010930605.1|1808515_1809502_-	DctP family TRAP transporter solute-binding subunit	NA	NA	NA	NA	NA
WP_003811701.1|1809674_1810394_-	FadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005013747.1|1810510_1811461_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 19
NZ_CP010838	Bordetella pertussis strain H374 chromosome, complete genome	4107437	1992646	2062298	4107437	tRNA,transposase	Staphylococcus_phage(16.67%)	55	NA	NA
WP_003818515.1|1992646_1995304_-|tRNA	leucine--tRNA ligase	tRNA	A0A2H4PQS0	Staphylococcus_phage	39.0	3.3e-173
WP_010930709.1|1995381_1996584_-	MFS transporter	NA	NA	NA	NA	NA
WP_003810260.1|1996580_1997093_-	MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247822.1|1997215_1997653_-	HU family DNA-binding protein	NA	NA	NA	NA	NA
WP_010931070.1|1997929_1998880_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_062826579.1|1998978_1999929_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930710.1|2000182_2001988_+	STAS domain-containing protein	NA	A0A2H4J153	uncultured_Caudovirales_phage	27.5	2.2e-19
WP_010930711.1|2002101_2002269_-	50S ribosomal protein L33	NA	NA	NA	NA	NA
WP_003810297.1|2002332_2002569_-	50S ribosomal protein L28	NA	NA	NA	NA	NA
WP_010930712.1|2002937_2004137_-	multidrug effflux MFS transporter	NA	NA	NA	NA	NA
WP_010929591.1|2005652_2006603_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003818523.1|2007054_2008056_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003810306.1|2008228_2009086_+	proline/glycine betaine ABC transporter permease	NA	NA	NA	NA	NA
WP_003810308.1|2009082_2010345_+	glycine betaine/L-proline ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	36.6	6.8e-28
WP_003818524.1|2010445_2010820_+	tautomerase family protein	NA	NA	NA	NA	NA
WP_010930713.1|2010892_2012080_+	acetyl-CoA C-acyltransferase family protein	NA	NA	NA	NA	NA
WP_010930714.1|2012164_2012935_+	spermidine synthase	NA	NA	NA	NA	NA
WP_010930715.1|2013048_2013813_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930716.1|2013763_2015065_+	malonyl-CoA decarboxylase family protein	NA	NA	NA	NA	NA
WP_010930717.1|2015061_2015868_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003818532.1|2017612_2018584_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003818533.1|2018740_2019253_+	superoxide dismutase family protein	NA	Q9MC02	Salmonella_phage	52.3	1.8e-43
WP_010930718.1|2019411_2020386_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930719.1|2021386_2022181_+	ABC transporter ATP-binding protein	NA	A0A1V0SE00	Indivirus	25.7	5.1e-05
WP_003818535.1|2022206_2023013_-	TOBE domain-containing protein	NA	NA	NA	NA	NA
WP_003810329.1|2023123_2023714_+	DUF4136 domain-containing protein	NA	NA	NA	NA	NA
WP_010930720.1|2023724_2024903_+	patatin-like phospholipase family protein	NA	NA	NA	NA	NA
WP_010930721.1|2025005_2025380_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_019248531.1|2025632_2026964_+	efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
WP_019247651.1|2027030_2030261_+	multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_003810344.1|2031751_2032498_+	pyridoxine 5'-phosphate synthase	NA	NA	NA	NA	NA
WP_010930724.1|2032582_2033044_+	holo-ACP synthase	NA	NA	NA	NA	NA
WP_010930725.1|2033081_2034140_+	beta-N-acetylhexosaminidase	NA	NA	NA	NA	NA
WP_010930726.1|2034102_2035932_+	excinuclease ABC subunit UvrC	NA	NA	NA	NA	NA
WP_003810356.1|2035971_2036544_+	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	NA	NA	NA	NA	NA
WP_010930727.1|2037968_2038790_-	NADPH-dependent 7-cyano-7-deazaguanine reductase QueF	NA	A0A2I7SAX1	Vibrio_phage	37.6	4.1e-42
WP_010930728.1|2039108_2040431_+	isocitrate lyase	NA	NA	NA	NA	NA
WP_010930729.1|2040790_2041426_+	membrane protein	NA	NA	NA	NA	NA
WP_010930730.1|2041385_2042336_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930731.1|2043206_2044079_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010930732.1|2044156_2045296_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930733.1|2045654_2046911_+	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA	NA
WP_003816691.1|2046916_2047444_+	aromatic-ring-hydroxylating dioxygenase subunit beta	NA	NA	NA	NA	NA
WP_003816690.1|2047448_2048267_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003816687.1|2048266_2048989_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930735.1|2049010_2049325_+	2Fe-2S iron-sulfur cluster binding domain-containing protein	NA	NA	NA	NA	NA
WP_010930736.1|2049342_2050491_+	CoA transferase	NA	NA	NA	NA	NA
WP_010930737.1|2050521_2051397_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003816680.1|2051393_2052713_-	AMP-binding protein	NA	NA	NA	NA	NA
WP_014486081.1|2052785_2053982_-	acetyl-CoA acetyltransferase	NA	NA	NA	NA	NA
WP_010930739.1|2053992_2055480_-	hydroxymethylglutaryl-CoA synthase family protein	NA	NA	NA	NA	NA
WP_010930740.1|2058074_2058974_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_023852887.1|2059111_2060077_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_005015810.1|2060175_2061126_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|2061347_2062298_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 20
NZ_CP010838	Bordetella pertussis strain H374 chromosome, complete genome	4107437	2073794	2122151	4107437	transposase	Erysipelothrix_phage(16.67%)	45	NA	NA
WP_005013747.1|2073794_2074745_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812172.1|2074843_2075140_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247707.1|2075314_2076667_+	glutathione-disulfide reductase	NA	A0A2K5B2C5	Erysipelothrix_phage	27.6	2.9e-45
WP_010930153.1|2076809_2077826_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010930748.1|2079805_2080819_-	pyridoxamine 5'-phosphate oxidase family protein	NA	NA	NA	NA	NA
WP_010930749.1|2080905_2081811_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003812179.1|2081967_2082312_+	exported protein	NA	NA	NA	NA	NA
WP_010930750.1|2082469_2082928_+	(2Fe-2S)-binding protein	NA	NA	NA	NA	NA
WP_010930751.1|2082941_2085158_+	xanthine dehydrogenase family protein molybdopterin-binding subunit	NA	NA	NA	NA	NA
WP_003812183.1|2085154_2086216_+	XdhC family protein	NA	NA	NA	NA	NA
WP_010930752.1|2086244_2087219_+	AraC family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930753.1|2087170_2087989_-	hypothetical protein	NA	A0A1B1INV8	uncultured_Mediterranean_phage	28.8	2.3e-16
WP_003812191.1|2088001_2088610_-	LON peptidase substrate-binding domain-containing protein	NA	NA	NA	NA	NA
WP_010930754.1|2088784_2089180_+	VOC family protein	NA	NA	NA	NA	NA
WP_010930755.1|2089198_2090638_+	MFS transporter	NA	A0A0M3UL24	Mycobacterium_phage	37.4	7.4e-55
WP_003812199.1|2090666_2091014_+	GFA family protein	NA	NA	NA	NA	NA
WP_010929577.1|2091032_2091983_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|2092635_2093586_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023997035.1|2093669_2095487_+	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	27.4	2.3e-37
WP_019247659.1|2095560_2096208_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930758.1|2096220_2097150_-	ZIP family metal transporter	NA	NA	NA	NA	NA
WP_014905663.1|2097319_2097784_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003816977.1|2098031_2098712_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003816975.1|2098760_2100452_+	STAS domain-containing protein	NA	A0A2H4J153	uncultured_Caudovirales_phage	27.3	5.0e-42
WP_010930760.1|2100467_2101019_-	SRPBCC family protein	NA	NA	NA	NA	NA
WP_003816971.1|2101015_2101387_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010930761.1|2101499_2102336_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_029443822.1|2102346_2102871_-	DUF302 domain-containing protein	NA	NA	NA	NA	NA
WP_003812228.1|2102968_2103148_+	DUF3008 family protein	NA	NA	NA	NA	NA
WP_010930763.1|2103277_2104252_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003816964.1|2104382_2104739_+	DUF1428 domain-containing protein	NA	NA	NA	NA	NA
WP_010930764.1|2104728_2105604_-	PhzF family phenazine biosynthesis protein	NA	NA	NA	NA	NA
WP_010930765.1|2105702_2106587_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930766.1|2106608_2107904_-	DUF445 domain-containing protein	NA	NA	NA	NA	NA
WP_003816959.1|2108852_2109503_+	NAD(P)H-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010930767.1|2109590_2111111_-	aldehyde dehydrogenase	NA	NA	NA	NA	NA
WP_010930768.1|2111368_2113234_+	sigma-54-dependent Fis family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|2114279_2115230_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_162268681.1|2115247_2115388_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930769.1|2116202_2116562_-	CidA/LrgA family protein	NA	NA	NA	NA	NA
WP_010930770.1|2116549_2117986_-	dethiobiotin synthase	NA	NA	NA	NA	NA
WP_010930771.1|2117982_2118636_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_010930772.1|2118632_2119826_-	8-amino-7-oxononanoate synthase	NA	NA	NA	NA	NA
WP_010930773.1|2119929_2121204_+	adenosylmethionine--8-amino-7-oxononanoate transaminase	NA	A0A1V0SKB7	Klosneuvirus	28.9	9.6e-14
WP_005012067.1|2121200_2122151_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 21
NZ_CP010838	Bordetella pertussis strain H374 chromosome, complete genome	4107437	2133355	2174046	4107437	tRNA,protease,transposase	Klosneuvirus(25.0%)	37	NA	NA
WP_005013747.1|2133355_2134306_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931070.1|2134404_2135355_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_047122784.1|2135314_2135728_-	transcriptional regulator	NA	A0A222YXG1	Escherichia_phage	59.0	3.8e-36
WP_003816708.1|2136012_2136312_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930783.1|2136721_2139004_-	RNA polymerase sigma factor RpoD	NA	A0A2I7SAT0	Vibrio_phage	30.1	3.2e-36
WP_124740709.1|2139469_2139664_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930784.1|2139689_2141720_-	DNA primase	NA	A0A0K1LMQ9	Caulobacter_phage	41.9	1.0e-65
WP_006218592.1|2141739_2141952_-	30S ribosomal protein S21	NA	NA	NA	NA	NA
WP_003810720.1|2142229_2142769_-	phosphoribosyltransferase	NA	NA	NA	NA	NA
WP_023852902.1|2142882_2144178_-	adenylosuccinate synthase	NA	A0A160ER07	Powai_lake_megavirus	33.5	3.0e-63
WP_010930786.1|2144254_2145412_-	ATP phosphoribosyltransferase regulatory subunit	NA	NA	NA	NA	NA
WP_010930787.1|2145595_2146495_-|protease	protease modulator HflC	protease	NA	NA	NA	NA
WP_010930788.1|2146513_2147818_-|protease	FtsH protease activity modulator HflK	protease	NA	NA	NA	NA
WP_010930789.1|2147783_2148890_-	GTPase HflX	NA	NA	NA	NA	NA
WP_003810707.1|2148977_2149214_-	RNA chaperone Hfq	NA	NA	NA	NA	NA
WP_010930790.1|2149352_2150423_-	histidinol-phosphate transaminase	NA	A0A1X6WGT4	Pacmanvirus	25.7	2.5e-15
WP_003810703.1|2150426_2151782_-	ribosome biogenesis GTPase Der	NA	NA	NA	NA	NA
WP_003810701.1|2151808_2152969_-	outer membrane protein assembly factor BamB	NA	NA	NA	NA	NA
WP_010930791.1|2152971_2153610_-	tetratricopeptide repeat protein	NA	NA	NA	NA	NA
WP_023995843.1|2153611_2154898_-|tRNA	histidine--tRNA ligase	tRNA	NA	NA	NA	NA
WP_010930793.1|2154956_2156252_-	flavodoxin-dependent (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase	NA	NA	NA	NA	NA
WP_003810693.1|2156258_2156765_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_004568542.1|2156761_2157910_-	23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN	NA	NA	NA	NA	NA
WP_003810689.1|2157937_2158363_-	nucleoside-diphosphate kinase	NA	D2E8E1	Anguillid_herpesvirus	43.2	2.1e-21
WP_010930794.1|2158685_2161568_+|tRNA	valine--tRNA ligase	tRNA	A0A1V0SK04	Klosneuvirus	37.1	3.7e-138
WP_023852900.1|2161660_2162416_-	MipA/OmpV family protein	NA	NA	NA	NA	NA
WP_010930796.1|2163181_2164531_+	two-component sensor histidine kinase	NA	NA	NA	NA	NA
WP_076879566.1|2164629_2165580_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930048.1|2165678_2166629_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930594.1|2166702_2167176_+	RidA family protein	NA	NA	NA	NA	NA
WP_010930593.1|2167201_2168410_+	aminotransferase class V-fold PLP-dependent enzyme	NA	NA	NA	NA	NA
WP_003816734.1|2168406_2169180_-|tRNA	tRNA (guanosine(37)-N1)-methyltransferase TrmD	tRNA	NA	NA	NA	NA
WP_014905757.1|2169179_2169803_-	ribosome maturation factor RimM	NA	NA	NA	NA	NA
WP_010926757.1|2169968_2170229_-	30S ribosomal protein S16	NA	NA	NA	NA	NA
WP_010930591.1|2170532_2171114_+	hypothetical protein	NA	NA	NA	NA	NA
WP_004568544.1|2171180_2171435_-	sulfurtransferase TusA family protein	NA	NA	NA	NA	NA
WP_010930590.1|2171421_2174046_-|tRNA	alanine--tRNA ligase	tRNA	A0A1V0SK38	Klosneuvirus	39.4	1.7e-81
>prophage 22
NZ_CP010838	Bordetella pertussis strain H374 chromosome, complete genome	4107437	2201829	2267378	4107437	tRNA,protease,transposase	Lake_Baikal_phage(20.0%)	58	NA	NA
WP_010929577.1|2201829_2202780_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930573.1|2202980_2203790_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_005013747.1|2203914_2204865_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930572.1|2204861_2205755_-	methylglyoxal synthase	NA	NA	NA	NA	NA
WP_003812452.1|2205879_2206074_-	Fe-S cluster assembly protein IscX	NA	NA	NA	NA	NA
WP_003812453.1|2206073_2206415_-	ISC system 2Fe-2S type ferredoxin	NA	NA	NA	NA	NA
WP_010930571.1|2206424_2208287_-	Fe-S protein assembly chaperone HscA	NA	A0A0N9QXN8	Chrysochromulina_ericina_virus	42.4	3.0e-101
WP_003812456.1|2208416_2208929_-	Fe-S protein assembly co-chaperone HscB	NA	NA	NA	NA	NA
WP_003812458.1|2208931_2209255_-	iron-sulfur cluster assembly protein IscA	NA	A0A2H4N7N5	Lake_Baikal_phage	52.8	6.8e-25
WP_003812460.1|2209256_2209667_-	Fe-S cluster assembly scaffold IscU	NA	A0A218MKD1	uncultured_virus	79.0	7.5e-53
WP_010930570.1|2209704_2210916_-	IscS subfamily cysteine desulfurase	NA	NA	NA	NA	NA
WP_003812463.1|2210933_2211446_-	Fe-S cluster assembly transcriptional regulator IscR	NA	NA	NA	NA	NA
WP_010930569.1|2211661_2212153_-	low molecular weight phosphotyrosine protein phosphatase	NA	NA	NA	NA	NA
WP_010930568.1|2212405_2214442_-	excinuclease ABC subunit UvrB	NA	NA	NA	NA	NA
WP_019247244.1|2214519_2215722_+	aspartate/tyrosine/aromatic aminotransferase	NA	NA	NA	NA	NA
WP_010930566.1|2215850_2216501_+	transcriptional repressor LexA	NA	A0A2H4JG58	uncultured_Caudovirales_phage	50.7	3.3e-10
WP_010929591.1|2218058_2219009_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247934.1|2219579_2219792_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247935.1|2219809_2220541_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003812478.1|2220575_2221217_-	CoA transferase subunit B	NA	NA	NA	NA	NA
WP_010930565.1|2221209_2221878_-	3-oxoacid CoA-transferase subunit A	NA	NA	NA	NA	NA
WP_010930564.1|2224090_2224867_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930563.1|2224888_2226046_-	thiolase	NA	NA	NA	NA	NA
WP_003812491.1|2226042_2226474_-	OB-fold domain-containing protein	NA	NA	NA	NA	NA
WP_015063637.1|2226470_2227274_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010930561.1|2227287_2227689_-	MaoC family dehydratase	NA	NA	NA	NA	NA
WP_010930560.1|2227755_2228727_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930559.1|2228792_2230016_-	CoA transferase	NA	NA	NA	NA	NA
WP_019247936.1|2230243_2231194_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930557.1|2231317_2233771_-	endopeptidase La	NA	A0A0R6PGP8	Moraxella_phage	52.0	1.5e-220
WP_010930556.1|2233959_2235264_-|protease	ATP-dependent Clp protease ATP-binding subunit ClpX	protease	G3M9Z9	Bacillus_virus	53.8	3.2e-129
WP_003812508.1|2235368_2236022_-	ATP-dependent Clp endopeptidase proteolytic subunit ClpP	NA	A0A223W000	Agrobacterium_phage	57.5	6.8e-56
WP_010930555.1|2236024_2237335_-	trigger factor	NA	NA	NA	NA	NA
WP_010930554.1|2237531_2238092_+	TIGR00645 family protein	NA	K4K6D8	Caulobacter_phage	33.7	1.0e-23
WP_010930553.1|2238203_2238404_-	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	64.4	7.4e-14
WP_003812519.1|2238749_2239316_-	DUF924 family protein	NA	NA	NA	NA	NA
WP_010930551.1|2239399_2239603_-	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	62.1	1.6e-16
WP_003812524.1|2239909_2240230_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003812526.1|2240271_2240553_-	membrane protein	NA	NA	NA	NA	NA
WP_010930550.1|2240627_2241884_-	autotransporter Phg	NA	NA	NA	NA	NA
WP_010930549.1|2242266_2242596_+	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
WP_003812536.1|2244166_2244988_+	2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase	NA	NA	NA	NA	NA
WP_010930548.1|2244987_2246127_+	succinyl-diaminopimelate desuccinylase	NA	NA	NA	NA	NA
WP_019247938.1|2246133_2247030_+	50S ribosomal protein L3 N(5)-glutamine methyltransferase	NA	NA	NA	NA	NA
WP_010930546.1|2247026_2248952_+	ATP-binding cassette domain-containing protein	NA	A0A2K9L0W2	Tupanvirus	31.8	1.1e-66
WP_010926400.1|2249311_2251924_+	TonB-dependent receptor	NA	NA	NA	NA	NA
WP_003812546.1|2251976_2254277_-	UvrD-helicase domain-containing protein	NA	A7KV33	Bacillus_phage	35.9	9.9e-110
WP_003812548.1|2254273_2255482_-	fatty acid desaturase	NA	NA	NA	NA	NA
WP_010930545.1|2255743_2256118_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|2256114_2257065_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_076879626.1|2257163_2259158_-	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	33.3	4.4e-21
WP_010930543.1|2259217_2260183_+	bifunctional riboflavin kinase/FAD synthetase	NA	NA	NA	NA	NA
WP_010930542.1|2260172_2263034_+|tRNA	isoleucine--tRNA ligase	tRNA	A0A1V0SJ93	Klosneuvirus	25.5	1.0e-71
WP_010930541.1|2263036_2263543_+	lipoprotein signal peptidase	NA	NA	NA	NA	NA
WP_010930540.1|2263647_2264856_+	bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC	NA	Q9HH70	Methanothermobacter_phage	30.0	3.8e-36
WP_033446178.1|2264857_2265796_-	membrane protein	NA	NA	NA	NA	NA
WP_010930538.1|2265957_2266431_+	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012808.1|2266427_2267378_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 23
NZ_CP010838	Bordetella pertussis strain H374 chromosome, complete genome	4107437	2687016	2727685	4107437	tRNA,transposase	Salmonella_phage(33.33%)	42	NA	NA
WP_010929591.1|2687016_2687967_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_004567479.1|2688077_2688260_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931004.1|2688359_2688956_-	lipoprotein	NA	NA	NA	NA	NA
WP_010931005.1|2689139_2690231_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003812822.1|2690730_2691141_-	MerR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931006.1|2691199_2691541_-	integration host factor subunit alpha	NA	A0A0H3UZA0	Geobacillus_virus	42.2	2.8e-13
WP_010931007.1|2691546_2693964_-|tRNA	phenylalanine--tRNA ligase subunit beta	tRNA	NA	NA	NA	NA
WP_010926359.1|2693976_2694999_-|tRNA	phenylalanine--tRNA ligase subunit alpha	tRNA	A0A2H4UW22	Bodo_saltans_virus	38.6	1.0e-26
WP_003812832.1|2695073_2695433_-	50S ribosomal protein L20	NA	NA	NA	NA	NA
WP_003812834.1|2695448_2695646_-	50S ribosomal protein L35	NA	NA	NA	NA	NA
WP_010929584.1|2695981_2696932_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003816756.1|2697126_2697576_+	dUTP diphosphatase	NA	S4TNT3	Salmonella_phage	67.2	3.7e-45
WP_005012808.1|2697572_2698523_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931008.1|2698633_2700082_+	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
WP_010931009.1|2700196_2700478_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|2700581_2701532_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003820420.1|2701776_2702490_-	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_019247724.1|2702612_2702840_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_003816758.1|2703134_2703773_-	DedA family protein	NA	NA	NA	NA	NA
WP_010931011.1|2703881_2704916_+	metal-dependent hydrolase	NA	NA	NA	NA	NA
WP_010929591.1|2704912_2705863_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931012.1|2706278_2706803_-	DNA-binding protein	NA	J9Q7G7	Salmonella_phage	32.9	6.5e-09
WP_004567322.1|2706806_2707076_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931013.1|2707274_2708336_-	LacI family DNA-binding transcriptional regulator	NA	NA	NA	NA	NA
WP_010931014.1|2708419_2710054_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	31.1	2.9e-15
WP_010931015.1|2710055_2710859_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931016.1|2710887_2711847_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931017.1|2711850_2713365_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019248147.1|2713401_2714406_-	M20/M25/M40 family metallo-hydrolase	NA	NA	NA	NA	NA
WP_010931018.1|2714837_2715308_-	DUF1801 domain-containing protein	NA	NA	NA	NA	NA
WP_010931019.1|2715343_2715955_-	LysE family translocator	NA	NA	NA	NA	NA
WP_010931020.1|2715985_2716609_-	FMN-binding negative transcriptional regulator	NA	NA	NA	NA	NA
WP_010931021.1|2716689_2718222_+	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
WP_010931022.1|2718256_2719498_-	MFS transporter	NA	NA	NA	NA	NA
WP_010931023.1|2719541_2720573_-	alcohol dehydrogenase catalytic domain-containing protein	NA	A0A2K9L339	Tupanvirus	27.8	1.8e-26
WP_010931024.1|2720569_2721739_-	FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010931025.1|2721732_2722413_-	cupin domain-containing protein	NA	NA	NA	NA	NA
WP_010931026.1|2722574_2723417_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931027.1|2723579_2724551_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010931028.1|2724722_2725601_+	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
WP_010931029.1|2725623_2726694_-	FUSC family protein	NA	NA	NA	NA	NA
WP_005013747.1|2726734_2727685_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 24
NZ_CP010838	Bordetella pertussis strain H374 chromosome, complete genome	4107437	2783150	2856020	4107437	tRNA,transposase	Moraxella_phage(16.67%)	58	NA	NA
WP_003810909.1|2783150_2783567_-|tRNA	aminoacyl-tRNA hydrolase	tRNA	NA	NA	NA	NA
WP_010931061.1|2783677_2784310_+	7-carboxy-7-deazaguanine synthase	NA	NA	NA	NA	NA
WP_010931062.1|2784338_2784782_+	6-carboxytetrahydropterin synthase QueD	NA	NA	NA	NA	NA
WP_003810897.1|2784803_2785895_-	TRAP transporter substrate-binding protein DctP	NA	NA	NA	NA	NA
WP_010931063.1|2785949_2786750_-	aldolase	NA	NA	NA	NA	NA
WP_010931064.1|2786885_2787506_+	cupin domain-containing protein	NA	NA	NA	NA	NA
WP_010931065.1|2787645_2788119_+	MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|2789258_2790209_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931066.1|2790205_2797867_-	hemagglutinin repeat-containing protein	NA	A0A0R6PJK4	Moraxella_phage	30.9	7.3e-24
WP_010931067.1|2798107_2802154_-	phosphoribosylformylglycinamidine synthase	NA	A9YX36	Burkholderia_phage	67.4	6.3e-160
WP_003816847.1|2802466_2803048_+	TRAP transporter small permease	NA	NA	NA	NA	NA
WP_010931068.1|2803044_2804343_+	TRAP transporter large permease	NA	NA	NA	NA	NA
WP_010931069.1|2804422_2805451_+	DctP family TRAP transporter solute-binding subunit	NA	NA	NA	NA	NA
WP_010931070.1|2805711_2806662_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010927663.1|2806658_2807609_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931071.1|2807925_2808531_+	fimbrial major subunit FimX	NA	NA	NA	NA	NA
WP_010931072.1|2808584_2809898_-	phenylacetate--CoA ligase	NA	NA	NA	NA	NA
WP_003813284.1|2809972_2810443_-	hydroxyphenylacetyl-CoA thioesterase PaaI	NA	NA	NA	NA	NA
WP_010931073.1|2810442_2811231_-	2-(1,2-epoxy-1,2-dihydrophenyl)acetyl-CoA isomerase	NA	NA	NA	NA	NA
WP_062826521.1|2811241_2812894_-	phenylacetic acid degradation protein PaaN	NA	NA	NA	NA	NA
WP_010929591.1|2812981_2813932_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931075.1|2815093_2815600_-	phenylacetate-CoA oxygenase subunit PaaJ	NA	NA	NA	NA	NA
WP_003813293.1|2815596_2816361_-	phenylacetate-CoA oxygenase subunit PaaC	NA	NA	NA	NA	NA
WP_010931076.1|2816376_2816661_-	1,2-phenylacetyl-CoA epoxidase subunit B	NA	NA	NA	NA	NA
WP_003813298.1|2816725_2817715_-	1,2-phenylacetyl-CoA epoxidase subunit A	NA	NA	NA	NA	NA
WP_010931077.1|2817886_2818816_+	phenylacetic acid degradation operon negative regulatory protein PaaX	NA	NA	NA	NA	NA
WP_003813302.1|2818787_2819474_-	NAD(P)H-hydrate epimerase	NA	NA	NA	NA	NA
WP_003813303.1|2819507_2820053_-	oligoribonuclease	NA	Q8B5Y0	Diachasmimorpha_longicaudata_entomopoxvirus	37.7	2.1e-26
WP_003813306.1|2820097_2821363_+	M48 family metallopeptidase	NA	NA	NA	NA	NA
WP_003813309.1|2821359_2822262_+	ribosome small subunit-dependent GTPase A	NA	NA	NA	NA	NA
WP_019247679.1|2823443_2824388_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931079.1|2824482_2826000_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931080.1|2826041_2827670_-	gamma-glutamyltransferase	NA	NA	NA	NA	NA
WP_003811986.1|2827777_2828659_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931081.1|2831771_2832146_+	endonuclease	NA	F4YXR7	Roseobacter_phage	54.4	2.1e-25
WP_003812004.1|2832170_2832509_-	P-II family nitrogen regulator	NA	NA	NA	NA	NA
WP_010931082.1|2832552_2834187_-	NAD+ synthase	NA	A0A2L0UZF5	Agrobacterium_phage	36.6	8.3e-87
WP_010931083.1|2834225_2835572_-	mechanosensitive ion channel family protein	NA	NA	NA	NA	NA
WP_003812010.1|2835679_2837101_+	argininosuccinate lyase	NA	NA	NA	NA	NA
WP_010931084.1|2837170_2837755_-	nitroreductase	NA	NA	NA	NA	NA
WP_005012067.1|2837857_2838808_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931085.1|2838942_2840049_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010931086.1|2840059_2841157_+	GTP 3',8-cyclase MoaA	NA	NA	NA	NA	NA
WP_010931087.1|2841301_2842507_-	molybdopterin molybdotransferase MoeA	NA	NA	NA	NA	NA
WP_010931088.1|2842513_2843035_-	molybdenum cofactor biosynthesis protein B	NA	NA	NA	NA	NA
WP_010931089.1|2843031_2843523_-	molybdenum cofactor biosynthesis protein MoaE	NA	NA	NA	NA	NA
WP_003819740.1|2843519_2843771_-	MoaD/ThiS family protein	NA	NA	NA	NA	NA
WP_003819741.1|2843751_2844237_-	cyclic pyranopterin monophosphate synthase MoaC	NA	NA	NA	NA	NA
WP_010931090.1|2844372_2847834_+	DUF748 domain-containing protein	NA	NA	NA	NA	NA
WP_010931091.1|2847851_2848736_+	dienelactone hydrolase family protein	NA	NA	NA	NA	NA
WP_010931092.1|2848745_2849177_-	lipoprotein	NA	NA	NA	NA	NA
WP_003809348.1|2849423_2849927_+	peroxiredoxin	NA	M1I839	Pelagibacter_phage	44.1	1.8e-24
WP_010931094.1|2850004_2851405_+	MFS transporter	NA	NA	NA	NA	NA
WP_010931095.1|2851479_2852355_-	membrane protein	NA	NA	NA	NA	NA
WP_023853546.1|2852351_2853359_-	biotin synthase BioB	NA	NA	NA	NA	NA
WP_010931097.1|2853826_2854132_+	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
WP_003819753.1|2854222_2854813_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930525.1|2855003_2856020_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
>prophage 25
NZ_CP010838	Bordetella pertussis strain H374 chromosome, complete genome	4107437	2859163	2925974	4107437	protease,transposase	uncultured_Mediterranean_phage(28.57%)	50	NA	NA
WP_023995489.1|2859163_2860114_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|2860212_2861163_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931099.1|2861159_2861954_-	N-formylglutamate deformylase	NA	NA	NA	NA	NA
WP_010931100.1|2861985_2862690_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010931101.1|2862764_2863565_-	SURF1 family protein	NA	NA	NA	NA	NA
WP_003809276.1|2863561_2863969_-	cytochrome o ubiquinol oxidase subunit IV	NA	NA	NA	NA	NA
WP_003819722.1|2863965_2864607_-	cytochrome o ubiquinol oxidase subunit III	NA	NA	NA	NA	NA
WP_010931102.1|2864599_2866600_-	cytochrome o ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
WP_010931103.1|2867860_2869192_+	MFS transporter	NA	NA	NA	NA	NA
WP_005012067.1|2869188_2870139_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931105.1|2871845_2872112_-	accessory factor UbiK family protein	NA	NA	NA	NA	NA
WP_003812839.1|2872819_2873158_+	P-II family nitrogen regulator	NA	NA	NA	NA	NA
WP_010931107.1|2877711_2878314_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931108.1|2878410_2879700_+	MFS transporter	NA	NA	NA	NA	NA
WP_003812846.1|2879757_2880489_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	31.0	1.4e-12
WP_010931109.1|2880485_2881289_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	23.5	7.9e-14
WP_003812851.1|2881285_2882374_-	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
WP_003820410.1|2882370_2883300_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003812857.1|2883448_2884594_-	branched-chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930800.1|2884615_2885566_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_154698391.1|2885583_2885742_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931110.1|2885896_2889718_-	trifunctional transcriptional regulator/proline dehydrogenase/L-glutamate gamma-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
WP_010931111.1|2889874_2890543_-	membrane integrity-associated transporter subunit PqiC	NA	NA	NA	NA	NA
WP_014905522.1|2890547_2892221_-	MCE family protein	NA	NA	NA	NA	NA
WP_003820402.1|2892239_2893559_-	PqiA/YebS family transporter subunit	NA	NA	NA	NA	NA
WP_062826523.1|2893563_2895879_-|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	protease	A0A223W0B1	Agrobacterium_phage	41.9	9.1e-164
WP_010931115.1|2895934_2898103_-	penicillin-binding protein 1C	NA	NA	NA	NA	NA
WP_010931116.1|2898099_2903289_-	alpha-2-macroglobulin family protein	NA	NA	NA	NA	NA
WP_003820400.1|2903378_2903693_-|protease	ATP-dependent Clp protease adapter ClpS	protease	A0A1B1IT64	uncultured_Mediterranean_phage	43.8	1.2e-10
WP_003812875.1|2903920_2904166_+	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	76.6	1.3e-20
WP_003820399.1|2904260_2904779_+	DUF192 domain-containing protein	NA	A0A1B1IUW8	uncultured_Mediterranean_phage	42.2	5.1e-14
WP_010931117.1|2904878_2906084_-	3-oxoadipyl-CoA thiolase	NA	NA	NA	NA	NA
WP_019247560.1|2906199_2907597_-	chloride channel protein	NA	NA	NA	NA	NA
WP_010931119.1|2907713_2908292_-	superoxide dismutase [Fe]	NA	NA	NA	NA	NA
WP_010931120.1|2908364_2909756_-	exodeoxyribonuclease VII large subunit	NA	A0A1V0SD82	Indivirus	32.0	1.4e-29
WP_005012067.1|2909923_2910874_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812889.1|2911154_2911775_+	MotA/TolQ/ExbB proton channel family protein	NA	NA	NA	NA	NA
WP_010931122.1|2911771_2912185_+	biopolymer transporter ExbD	NA	NA	NA	NA	NA
WP_010931123.1|2912181_2913225_+	tetraacyldisaccharide 4'-kinase	NA	NA	NA	NA	NA
WP_003812895.1|2913280_2913469_+	Trm112 family protein	NA	NA	NA	NA	NA
WP_010931124.1|2913478_2914243_+	3-deoxy-manno-octulosonate cytidylyltransferase	NA	NA	NA	NA	NA
WP_010931125.1|2914333_2914990_+	adenylate kinase	NA	NA	NA	NA	NA
WP_010931126.1|2915081_2915840_+	3-hydroxyacyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_010931127.1|2915865_2917467_+	murein biosynthesis integral membrane protein MurJ	NA	NA	NA	NA	NA
WP_010931128.1|2917667_2918672_+	FecR domain-containing protein	NA	NA	NA	NA	NA
WP_003812908.1|2918772_2919036_+	30S ribosomal protein S20	NA	NA	NA	NA	NA
WP_010931129.1|2919153_2919930_-	2-dehydro-3-deoxyglucarate aldolase	NA	NA	NA	NA	NA
WP_005012067.1|2920520_2921471_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931130.1|2923854_2924967_-	Ldh family oxidoreductase	NA	NA	NA	NA	NA
WP_005012808.1|2925023_2925974_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 26
NZ_CP010838	Bordetella pertussis strain H374 chromosome, complete genome	4107437	2956360	2995549	4107437	transposase	Planktothrix_phage(50.0%)	37	NA	NA
WP_005012067.1|2956360_2957311_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_162268686.1|2957328_2957478_+	hypothetical protein	NA	NA	NA	NA	NA
WP_023852715.1|2957431_2958328_-	inositol monophosphatase	NA	NA	NA	NA	NA
WP_003814547.1|2960605_2962831_+	glycoside hydrolase family 31 protein	NA	NA	NA	NA	NA
WP_003814544.1|2962995_2964084_+	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	36.4	8.7e-32
WP_019247918.1|2964040_2964694_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931144.1|2964741_2965539_+	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930176.1|2966070_2967021_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247277.1|2967095_2968250_+	iron-containing alcohol dehydrogenase	NA	NA	NA	NA	NA
WP_005012067.1|2968306_2969257_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814535.1|2969355_2969661_-	antibiotic biosynthesis monooxygenase	NA	NA	NA	NA	NA
WP_003820797.1|2969689_2970124_-	DUF126 domain-containing protein	NA	NA	NA	NA	NA
WP_010931147.1|2970125_2971370_-	DUF521 domain-containing protein	NA	NA	NA	NA	NA
WP_003820799.1|2971366_2972077_-	FadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_033446288.1|2972091_2973003_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931149.1|2973365_2973770_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247890.1|2973766_2974225_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_019247891.1|2974231_2975140_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_010931150.1|2975136_2976003_+	sugar ABC transporter permease	NA	NA	NA	NA	NA
WP_003814524.1|2975989_2976817_+	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
WP_003820806.1|2976827_2977955_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	32.3	1.2e-23
WP_023852748.1|2979032_2980271_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931152.1|2980312_2981575_+	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_010931153.1|2981581_2982334_+	DNA-binding protein	NA	NA	NA	NA	NA
WP_019248355.1|2982385_2982571_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003820813.1|2982846_2983311_+	redox-sensitive transcriptional activator SoxR	NA	NA	NA	NA	NA
WP_003820814.1|2983342_2984002_+	DNA-3-methyladenine glycosylase I	NA	NA	NA	NA	NA
WP_010931154.1|2984146_2986255_+	AsmA family protein	NA	NA	NA	NA	NA
WP_023852714.1|2986251_2987202_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931155.1|2987305_2987926_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931156.1|2988017_2988770_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_019248356.1|2989904_2991029_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247402.1|2991074_2991443_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|2991684_2992635_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247492.1|2993670_2994213_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023998107.1|2994410_2994581_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|2994598_2995549_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 28
NZ_CP010838	Bordetella pertussis strain H374 chromosome, complete genome	4107437	3379997	3433738	4107437	transposase	Staphylococcus_phage(33.33%)	48	NA	NA
WP_023995489.1|3379997_3380948_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931336.1|3381352_3381997_-	urease accessory protein UreG	NA	NA	NA	NA	NA
WP_019247677.1|3382021_3382606_-	urease accessory protein UreF	NA	NA	NA	NA	NA
WP_014905506.1|3382706_3383324_-	urease accessory protein UreE	NA	NA	NA	NA	NA
WP_010931337.1|3383326_3385042_-	urease subunit alpha	NA	NA	NA	NA	NA
WP_010931338.1|3385038_3385347_-	urease subunit beta	NA	NA	NA	NA	NA
WP_003814828.1|3385363_3385981_-	HupE/UreJ family protein	NA	NA	NA	NA	NA
WP_010931340.1|3386025_3386328_-	urease subunit gamma	NA	NA	NA	NA	NA
WP_003814832.1|3386428_3387283_-	urease accessory protein UreD	NA	NA	NA	NA	NA
WP_124740609.1|3387470_3387695_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929281.1|3387864_3388137_+	MerR family DNA-binding transcriptional regulator	NA	NA	NA	NA	NA
WP_010929282.1|3388554_3388962_-	GFA family protein	NA	NA	NA	NA	NA
WP_010931341.1|3389331_3390126_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010927102.1|3390226_3391462_+	methylaspartate ammonia-lyase	NA	NA	NA	NA	NA
WP_003814852.1|3391530_3392547_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931342.1|3392558_3393935_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_003814856.1|3393931_3395128_+	MFS transporter	NA	NA	NA	NA	NA
WP_003814858.1|3395124_3396663_-	SpoVR family protein	NA	NA	NA	NA	NA
WP_010931343.1|3396659_3397919_-	YeaH/YhbH family protein	NA	NA	NA	NA	NA
WP_005012067.1|3399859_3400810_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931344.1|3401576_3402671_-	CoA transferase	NA	NA	NA	NA	NA
WP_019247312.1|3402663_3403998_-	AMP-binding protein	NA	NA	NA	NA	NA
WP_003808193.1|3403951_3404635_-	TetR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003808195.1|3404660_3405824_-	acyl-CoA dehydrogenase family protein	NA	NA	NA	NA	NA
WP_004566224.1|3405820_3406822_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010931346.1|3406821_3407694_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010931347.1|3407690_3408440_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	27.8	1.9e-09
WP_010931348.1|3408436_3409228_-	ATP-binding cassette domain-containing protein	NA	A0A1M7XV31	Cedratvirus	29.4	1.7e-08
WP_010931349.1|3409224_3410364_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_047122778.1|3410639_3411425_+	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_014486103.1|3411458_3412241_+	crotonase/enoyl-CoA hydratase family protein	NA	NA	NA	NA	NA
WP_010931351.1|3412244_3412634_+	OB-fold domain-containing protein	NA	NA	NA	NA	NA
WP_010931352.1|3413773_3414637_+	MaoC family dehydratase N-terminal domain-containing protein	NA	NA	NA	NA	NA
WP_010931353.1|3414672_3415761_+	NAD(P)H-binding protein	NA	NA	NA	NA	NA
WP_010931070.1|3415757_3416708_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247959.1|3417061_3420040_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003818344.1|3420966_3421845_+	fatty acid desaturase	NA	NA	NA	NA	NA
WP_005013747.1|3423793_3424744_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931354.1|3424740_3425208_-	ribonuclease HI	NA	J9Q745	Salmonella_phage	50.7	5.6e-36
WP_010931355.1|3425250_3426021_-	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_010927090.1|3426041_3426842_+	hydroxyacylglutathione hydrolase	NA	NA	NA	NA	NA
WP_010931356.1|3426852_3428262_+	transglycosylase SLT domain-containing protein	NA	NA	NA	NA	NA
WP_003814739.1|3428356_3429142_+	enoyl-ACP reductase FabI	NA	NA	NA	NA	NA
WP_010931561.1|3429381_3430398_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003814742.1|3430505_3430898_-	OsmC family protein	NA	NA	NA	NA	NA
WP_010931357.1|3431035_3431716_+	tellurite resistance TerB family protein	NA	NA	NA	NA	NA
WP_023994844.1|3431720_3432692_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930179.1|3432787_3433738_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 29
NZ_CP010838	Bordetella pertussis strain H374 chromosome, complete genome	4107437	3439893	3499193	4107437	tRNA,transposase	Acinetobacter_phage(27.27%)	48	NA	NA
WP_003820957.1|3439893_3441657_+|tRNA	glutamine--tRNA ligase/YqeY domain fusion protein	tRNA	A0A222YZ70	Escherichia_phage	50.0	5.0e-162
WP_010931362.1|3441768_3442647_+	septum site-determining protein MinC	NA	NA	NA	NA	NA
WP_003814250.1|3442759_3443575_+	septum site-determining protein MinD	NA	NA	NA	NA	NA
WP_003814252.1|3443578_3443830_+	cell division topological specificity factor MinE	NA	NA	NA	NA	NA
WP_010929632.1|3443914_3444931_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003814254.1|3445261_3445483_-	glycine zipper 2TM domain-containing protein	NA	NA	NA	NA	NA
WP_019247693.1|3447843_3448761_-	DMT family transporter	NA	NA	NA	NA	NA
WP_019247692.1|3449258_3450467_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931365.1|3450546_3452118_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003814275.1|3452235_3453171_-	glycosyltransferase family 2 protein	NA	NA	NA	NA	NA
WP_003814277.1|3453359_3454304_+	LysR family transcriptional regulator	NA	A0A2P0ZL89	Lactobacillus_phage	23.2	8.4e-07
WP_003814283.1|3454871_3460589_+	excinuclease ABC subunit UvrA	NA	A0A1B1IVR3	uncultured_Mediterranean_phage	39.5	1.0e-195
WP_010931367.1|3460594_3461722_+	aminodeoxychorismate synthase component I	NA	S4VT78	Pandoravirus	37.8	3.8e-38
WP_003814287.1|3461777_3462404_+	aminotransferase class IV	NA	NA	NA	NA	NA
WP_010931363.1|3462675_3463692_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010927020.1|3463787_3464498_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010931368.1|3464494_3465484_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931369.1|3465579_3467211_+	AMP-binding protein	NA	NA	NA	NA	NA
WP_010931370.1|3467213_3467951_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247745.1|3468106_3468979_-|tRNA	tRNA threonylcarbamoyladenosine dehydratase	tRNA	NA	NA	NA	NA
WP_003814298.1|3469247_3470468_+	MFS transporter	NA	NA	NA	NA	NA
WP_003814300.1|3470464_3471124_+	gamma-glutamylcyclotransferase	NA	NA	NA	NA	NA
WP_003814302.1|3471195_3471828_+	pyridoxamine 5'-phosphate oxidase	NA	NA	NA	NA	NA
WP_010931372.1|3471857_3472376_+	flavin reductase family protein	NA	NA	NA	NA	NA
WP_010931373.1|3472386_3473496_+	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_003814312.1|3473542_3474397_+	formyltetrahydrofolate deformylase	NA	NA	NA	NA	NA
WP_010931374.1|3474398_3475301_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|3476523_3477474_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023997720.1|3479230_3480220_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247413.1|3480216_3480375_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931375.1|3480395_3481184_-	indole-3-glycerol phosphate synthase TrpC	NA	A0A0P0IR83	Acinetobacter_phage	53.0	5.1e-66
WP_003817833.1|3481180_3482212_-	anthranilate phosphoribosyltransferase	NA	A0A0N7IRD9	Acinetobacter_phage	42.7	7.4e-73
WP_003815390.1|3482230_3482794_-	aminodeoxychorismate/anthranilate synthase component II	NA	A0A0P0IKJ1	Acinetobacter_phage	62.1	1.1e-65
WP_010931376.1|3482849_3484370_-	anthranilate synthase component I	NA	S4VT78	Pandoravirus	32.1	9.0e-43
WP_010931377.1|3484633_3485338_-	phosphoglycolate phosphatase	NA	NA	NA	NA	NA
WP_003815384.1|3485345_3486083_-	ribulose-phosphate 3-epimerase	NA	NA	NA	NA	NA
WP_003815381.1|3486188_3486563_+	Co2+/Mg2+ efflux protein ApaG	NA	NA	NA	NA	NA
WP_003815379.1|3486605_3487895_+	murein transglycosylase A	NA	NA	NA	NA	NA
WP_010931378.1|3487891_3489061_+	UbiH/UbiF family hydroxylase	NA	NA	NA	NA	NA
WP_010931379.1|3489057_3489897_+	thiol:disulfide interchange protein DsbC	NA	NA	NA	NA	NA
WP_010931380.1|3489956_3490892_+	D-2-hydroxyacid dehydrogenase family protein	NA	A0A1J0F959	Only_Syngen_Nebraska_virus	27.7	6.4e-15
WP_005012067.1|3490904_3491855_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931381.1|3491953_3492916_-|tRNA	tRNA 2-thiocytidine(32) synthetase TtcA	tRNA	A0A0U2S5Z2	Escherichia_phage	64.5	4.6e-93
WP_003817821.1|3492947_3493307_-	dihydroneopterin aldolase	NA	NA	NA	NA	NA
WP_010931382.1|3493431_3494334_+	NAD(P)/FAD-dependent oxidoreductase	NA	G3MA85	Bacillus_virus	24.0	1.9e-08
WP_010931383.1|3494335_3496108_-	M61 family metallopeptidase	NA	NA	NA	NA	NA
WP_003815367.1|3496142_3496919_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_005012808.1|3498242_3499193_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 30
NZ_CP010838	Bordetella pertussis strain H374 chromosome, complete genome	4107437	3514131	3572204	4107437	tRNA,transposase	Planktothrix_phage(12.5%)	47	NA	NA
WP_005012808.1|3514131_3515082_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931392.1|3515210_3516344_-	M20 family metallopeptidase	NA	NA	NA	NA	NA
WP_010931393.1|3516387_3517293_-	hydrolase	NA	NA	NA	NA	NA
WP_023852622.1|3517295_3518996_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	32.7	1.0e-15
WP_010931394.1|3518992_3519913_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_003817805.1|3519920_3520898_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931395.1|3520956_3521991_-	succinylglutamate desuccinylase/aspartoacylase family protein	NA	NA	NA	NA	NA
WP_003815317.1|3523965_3524202_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931396.1|3524328_3525192_-	NAD(P)H-hydrate dehydratase	NA	NA	NA	NA	NA
WP_003815315.1|3525280_3526102_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003815313.1|3526181_3526919_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010931397.1|3526915_3527908_-	nitronate monooxygenase	NA	NA	NA	NA	NA
WP_003817794.1|3528021_3528684_+	TetR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931399.1|3528728_3529877_+	acyl-CoA dehydrogenase family protein	NA	NA	NA	NA	NA
WP_010931400.1|3532200_3533151_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014486105.1|3533491_3534442_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|3534540_3535491_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_029443756.1|3535787_3536285_+	cupredoxin family protein	NA	NA	NA	NA	NA
WP_010931403.1|3536327_3538103_+	copper resistance system multicopper oxidase	NA	NA	NA	NA	NA
WP_010931404.1|3538110_3538977_+	copper resistance protein B	NA	NA	NA	NA	NA
WP_019249391.1|3538983_3539718_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010931406.1|3540887_3541682_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003815296.1|3541971_3542562_+	cysteine dioxygenase	NA	NA	NA	NA	NA
WP_010931407.1|3542595_3543924_-	amidase	NA	NA	NA	NA	NA
WP_010931408.1|3543998_3545144_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_014905478.1|3545255_3546254_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_033446233.1|3546216_3546651_+	carbon monoxide dehydrogenase	NA	NA	NA	NA	NA
WP_010929974.1|3548167_3549052_+	DMT family transporter	NA	NA	NA	NA	NA
WP_010929973.1|3549048_3550254_-	cardiolipin synthase ClsB	NA	NA	NA	NA	NA
WP_010929972.1|3550250_3551111_-	endonuclease/exonuclease/phosphatase family protein	NA	NA	NA	NA	NA
WP_003807038.1|3551223_3553014_-|tRNA	aspartate--tRNA ligase	tRNA	A0A1V0SAC0	Catovirus	25.5	6.5e-08
WP_003807035.1|3553054_3553720_-	DUF502 domain-containing protein	NA	A0A2I7S9X1	Vibrio_phage	28.4	6.7e-11
WP_010929971.1|3553720_3554029_-	FmdB family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929970.1|3554194_3555481_-	putative Na+/H+ antiporter	NA	NA	NA	NA	NA
WP_010929969.1|3556914_3557865_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929968.1|3559816_3561031_-	formate-dependent phosphoribosylglycinamide formyltransferase	NA	NA	NA	NA	NA
WP_003815171.1|3561136_3562126_+	KpsF/GutQ family sugar-phosphate isomerase	NA	A0A2P0VNK5	Tetraselmis_virus	37.7	4.3e-38
WP_003815172.1|3562122_3562731_+	HAD-IIIA family hydrolase	NA	E3T535	Cafeteria_roenbergensis_virus	26.1	5.2e-10
WP_010929967.1|3562743_3563373_+	LPS export ABC transporter periplasmic protein LptC	NA	NA	NA	NA	NA
WP_003815175.1|3563369_3563990_+	lipopolysaccharide transport periplasmic protein LptA	NA	NA	NA	NA	NA
WP_003815177.1|3564021_3564813_+	LPS export ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	27.4	9.5e-20
WP_010929966.1|3565664_3566120_+	PTS sugar transporter subunit IIA	NA	NA	NA	NA	NA
WP_010929965.1|3566138_3567065_+	HPr kinase/phosphorylase	NA	NA	NA	NA	NA
WP_010929964.1|3567118_3568405_-	cytochrome c	NA	NA	NA	NA	NA
WP_003815183.1|3569335_3570208_+	RNase adapter RapZ	NA	A0A1P8D5W0	Corynebacterium_phage	34.5	2.4e-08
WP_010929963.1|3570204_3571155_+	septal ring lytic transglycosylase RlpA family protein	NA	F5B3X9	Synechococcus_phage	47.2	6.9e-17
WP_005012067.1|3571253_3572204_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 32
NZ_CP010838	Bordetella pertussis strain H374 chromosome, complete genome	4107437	4029608	4083040	4107437	transposase	Planktothrix_phage(40.0%)	46	NA	NA
WP_010931661.1|4029608_4030559_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931662.1|4030728_4031955_+	bifunctional glutamate N-acetyltransferase/amino-acid acetyltransferase ArgJ	NA	NA	NA	NA	NA
WP_010931663.1|4032154_4033021_+	ATP-binding protein	NA	NA	NA	NA	NA
WP_003815027.1|4033013_4033976_+	Nudix family hydrolase	NA	A0A221LFJ1	Barns_Ness_breadcrumb_sponge_sobemo-like_virus	53.4	1.9e-06
WP_010927663.1|4034076_4035027_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|4035125_4036076_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929577.1|4036174_4037125_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994937.1|4037121_4038615_-	efflux transporter outer membrane subunit	NA	NA	NA	NA	NA
WP_003815032.1|4038611_4041719_-	multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_010931665.1|4041715_4044784_-	MdtB/MuxB family multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_010931666.1|4044780_4046031_-	MdtA/MuxA family multidrug efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
WP_003815038.1|4046211_4046973_-	cell division protein ZapD	NA	NA	NA	NA	NA
WP_019247320.1|4047005_4047656_-	dephospho-CoA kinase	NA	NA	NA	NA	NA
WP_003820519.1|4047658_4048498_-	prepilin peptidase	NA	NA	NA	NA	NA
WP_003815047.1|4048738_4049482_+	copper resistance protein NlpE N-terminal domain-containing protein	NA	NA	NA	NA	NA
WP_003815049.1|4049564_4049912_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003815051.1|4050009_4050852_-	pantoate--beta-alanine ligase	NA	NA	NA	NA	NA
WP_003815053.1|4050896_4051784_-	segregation/condensation protein A	NA	NA	NA	NA	NA
WP_003815055.1|4051810_4051999_-	DUF3460 family protein	NA	NA	NA	NA	NA
WP_010931669.1|4052096_4053554_+	DHA2 family efflux MFS transporter permease subunit	NA	NA	NA	NA	NA
WP_010931670.1|4053540_4055067_+	glycerol kinase GlpK	NA	NA	NA	NA	NA
WP_003815061.1|4055085_4055553_-	CopD family protein	NA	NA	NA	NA	NA
WP_010931671.1|4055552_4056575_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_169507388.1|4056695_4057415_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	39.9	4.7e-34
WP_003815066.1|4057490_4058591_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003815068.1|4058592_4059783_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003815070.1|4059902_4060919_-	amino acid ABC transporter substrate-binding protein	NA	A0A1B1IT51	uncultured_Mediterranean_phage	42.1	1.0e-71
WP_003815073.1|4061237_4061909_+	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	38.2	9.5e-29
WP_010927126.1|4061905_4062814_+	FtsX-like permease family protein	NA	NA	NA	NA	NA
WP_010931672.1|4063025_4063673_+	chemoreceptor glutamine deamidase CheD	NA	NA	NA	NA	NA
WP_010931673.1|4067524_4068601_+	A/G-specific adenine glycosylase	NA	NA	NA	NA	NA
WP_003815084.1|4068611_4069421_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003815086.1|4069510_4070284_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_023853189.1|4070284_4070449_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930363.1|4070466_4071417_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_077274100.1|4071305_4072328_+	CoA transferase	NA	NA	NA	NA	NA
WP_010931674.1|4072317_4073472_+	CoA transferase	NA	NA	NA	NA	NA
WP_010931675.1|4073511_4074924_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_019247370.1|4075048_4075915_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931677.1|4075916_4076741_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_023853488.1|4076737_4077499_+	nitroreductase	NA	M1I6Q5	Acanthocystis_turfacea_Chlorella_virus	31.0	2.0e-19
WP_003808010.1|4077579_4078266_-	TetR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931679.1|4078439_4079447_+	hydroxymethylglutaryl-CoA lyase	NA	NA	NA	NA	NA
WP_003819309.1|4079443_4080223_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010931680.1|4080280_4081543_+	CoA transferase	NA	NA	NA	NA	NA
WP_010929591.1|4082089_4083040_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
