assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_001602095.1_ASM160209v1	NZ_CP014991	Helicobacter himalayensis strain YS1, complete genome	1	776086-776169	1	CRISPRCasFinder	no		DEDDh,cas3	Orphan	CGTGGCACATATGGGCGAAGCTT	23	0	0	NA	NA	NA	1	1	Orphan	DEDDh,cas3	NA,NA|175aa|down_4|NZ_CP014991.1_782219_782744_+,NA|370aa|down_5|NZ_CP014991.1_782908_784018_+	NA|235aa|up_9|NZ_CP014991.1_757660_758365_+	PRK05424, rplA, 50S ribosomal protein L1; Validated	NA|162aa|up_8|NZ_CP014991.1_758477_758963_+	PRK00099, rplJ, 50S ribosomal protein L10; Reviewed	NA|126aa|up_7|NZ_CP014991.1_759089_759467_+	PRK00157, rplL, 50S ribosomal protein L7/L12; Reviewed	NA|2888aa|up_6|NZ_CP014991.1_759627_768291_+	PRK09603, PRK09603, DNA-directed RNA polymerase subunit beta/beta'	NA|130aa|up_5|NZ_CP014991.1_768399_768789_+	PRK05163, rpsL, 30S ribosomal protein S12; Validated	NA|156aa|up_4|NZ_CP014991.1_768802_769270_+	PRK05302, PRK05302, 30S ribosomal protein S7; Validated	NA|693aa|up_3|NZ_CP014991.1_769365_771444_+	PRK00007, PRK00007, elongation factor G; Reviewed	NA|340aa|up_2|NZ_CP014991.1_772506_773526_+	pfam18025, FucT_N, Alpha-(1,3)-fucosyltransferase FucT N-terminal domain	NA|155aa|up_1|NZ_CP014991.1_773601_774066_+	cd06433, GT_2_WfgS_like, WfgS and WfeV are involved in O-antigen biosynthesis	NA|359aa|up_0|NZ_CP014991.1_774046_775123_+	COG0438, RfaG, Glycosyltransferase [Cell envelope biogenesis, outer membrane]	NA|488aa|down_0|NZ_CP014991.1_776503_777967_+	cd03801, GT4_PimA-like, phosphatidyl-myo-inositol mannosyltransferase	NA|113aa|down_1|NZ_CP014991.1_778053_778392_+	cd03801, GT4_PimA-like, phosphatidyl-myo-inositol mannosyltransferase	NA|952aa|down_2|NZ_CP014991.1_778382_781238_-	PRK00349, uvrA, excinuclease ABC subunit UvrA	NA|246aa|down_3|NZ_CP014991.1_781413_782151_-	TIGR01444, 2-O-methyltransferase_NoeI, methyltransferase, FkbM family	NA|175aa|down_4|NZ_CP014991.1_782219_782744_+	NA	NA|370aa|down_5|NZ_CP014991.1_782908_784018_+	NA	NA|146aa|down_6|NZ_CP014991.1_784325_784763_-	cd01043, DPS, DPS protein, ferritin-like diiron-binding domain	NA|175aa|down_7|NZ_CP014991.1_784973_785498_+	pfam02169, LPP20, LPP20 lipoprotein	NA|330aa|down_8|NZ_CP014991.1_785484_786474_+	COG0731, COG0731, Fe-S oxidoreductases [Energy production and conversion]	NA|686aa|down_9|NZ_CP014991.1_786512_788570_-	PRK07956, ligA, NAD-dependent DNA ligase LigA; Validated
GCF_001602095.1_ASM160209v1	NZ_CP014991	Helicobacter himalayensis strain YS1, complete genome	2	1340177-1340264	2	CRISPRCasFinder	no		DEDDh,cas3	Orphan	CAACATTAAACAATCAAGGCACTATAA	27	1	1	1340204-1340236	NZ_CP014991.1_1370327-1370295	NA	1	1	Orphan	DEDDh,cas3	NA|52aa|up_3|NZ_CP014991.1_1336712_1336868_-,NA|48aa|down_2|NZ_CP014991.1_1345865_1346009_+,NA|343aa|down_5|NZ_CP014991.1_1348600_1349629_+	NA|528aa|up_9|NZ_CP014991.1_1328762_1330346_-	pfam01384, PHO4, Phosphate transporter family	NA|302aa|up_8|NZ_CP014991.1_1330628_1331534_-	COG2204, AtoC, Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]	NA|405aa|up_7|NZ_CP014991.1_1331574_1332789_-	PRK09382, ispDF, bifunctional 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase/2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase protein; Provisional	NA|446aa|up_6|NZ_CP014991.1_1332982_1334320_+	pfam01964, ThiC_Rad_SAM, Radical SAM ThiC family	NA|186aa|up_5|NZ_CP014991.1_1334667_1335225_-	pfam13649, Methyltransf_25, Methyltransferase domain	NA|387aa|up_4|NZ_CP014991.1_1335431_1336592_-	PRK05250, PRK05250, S-adenosylmethionine synthetase; Validated	NA|52aa|up_3|NZ_CP014991.1_1336712_1336868_-	NA	NA|159aa|up_2|NZ_CP014991.1_1337279_1337756_-	sd00045, ANK, ankyrin repeats	NA|150aa|up_1|NZ_CP014991.1_1337825_1338275_-	PRK00137, rplI, 50S ribosomal protein L9; Reviewed	NA|203aa|up_0|NZ_CP014991.1_1338335_1338944_+	pfam01863, DUF45, Protein of unknown function DUF45	NA|1204aa|down_0|NZ_CP014991.1_1340546_1344158_+	COG1511, COG1511, Predicted membrane protein [Function unknown]	NA|474aa|down_1|NZ_CP014991.1_1344148_1345570_+	COG2863, COG2863, Cytochrome c553 [Energy production and conversion]	NA|48aa|down_2|NZ_CP014991.1_1345865_1346009_+	NA	NA|364aa|down_3|NZ_CP014991.1_1346572_1347664_-	PRK05382, PRK05382, chorismate synthase; Validated	NA|264aa|down_4|NZ_CP014991.1_1347660_1348452_-	PRK00102, rnc, ribonuclease III; Reviewed	NA|343aa|down_5|NZ_CP014991.1_1348600_1349629_+	NA	NA|326aa|down_6|NZ_CP014991.1_1349618_1350596_+	PRK15068, PRK15068, tRNA 5-methoxyuridine(34)/uridine 5-oxyacetic acid(34) synthase CmoB	NA|147aa|down_7|NZ_CP014991.1_1350605_1351046_+	COG2050, PaaI, HGG motif-containing thioesterase, possibly involved in aromatic compounds catabolism [Secondary metabolites biosynthesis,    transport, and catabolism]	NA|694aa|down_8|NZ_CP014991.1_1351054_1353136_-	PRK11824, PRK11824, polynucleotide phosphorylase/polyadenylase; Provisional	NA|229aa|down_9|NZ_CP014991.1_1353132_1353819_-	COG1926, COG1926, Predicted phosphoribosyltransferases [General function prediction only]
GCF_001602095.1_ASM160209v1	NZ_CP014991	Helicobacter himalayensis strain YS1, complete genome	3	1340438-1340520	3	CRISPRCasFinder	no		DEDDh,cas3	Orphan	CAACATTAAACAATCAAGGCACTATAA	27	0	0	NA	NA	NA	1	1	Orphan	DEDDh,cas3	NA|52aa|up_3|NZ_CP014991.1_1336712_1336868_-,NA|48aa|down_2|NZ_CP014991.1_1345865_1346009_+,NA|343aa|down_5|NZ_CP014991.1_1348600_1349629_+	NA|528aa|up_9|NZ_CP014991.1_1328762_1330346_-	pfam01384, PHO4, Phosphate transporter family	NA|302aa|up_8|NZ_CP014991.1_1330628_1331534_-	COG2204, AtoC, Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]	NA|405aa|up_7|NZ_CP014991.1_1331574_1332789_-	PRK09382, ispDF, bifunctional 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase/2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase protein; Provisional	NA|446aa|up_6|NZ_CP014991.1_1332982_1334320_+	pfam01964, ThiC_Rad_SAM, Radical SAM ThiC family	NA|186aa|up_5|NZ_CP014991.1_1334667_1335225_-	pfam13649, Methyltransf_25, Methyltransferase domain	NA|387aa|up_4|NZ_CP014991.1_1335431_1336592_-	PRK05250, PRK05250, S-adenosylmethionine synthetase; Validated	NA|52aa|up_3|NZ_CP014991.1_1336712_1336868_-	NA	NA|159aa|up_2|NZ_CP014991.1_1337279_1337756_-	sd00045, ANK, ankyrin repeats	NA|150aa|up_1|NZ_CP014991.1_1337825_1338275_-	PRK00137, rplI, 50S ribosomal protein L9; Reviewed	NA|203aa|up_0|NZ_CP014991.1_1338335_1338944_+	pfam01863, DUF45, Protein of unknown function DUF45	NA|1204aa|down_0|NZ_CP014991.1_1340546_1344158_+	COG1511, COG1511, Predicted membrane protein [Function unknown]	NA|474aa|down_1|NZ_CP014991.1_1344148_1345570_+	COG2863, COG2863, Cytochrome c553 [Energy production and conversion]	NA|48aa|down_2|NZ_CP014991.1_1345865_1346009_+	NA	NA|364aa|down_3|NZ_CP014991.1_1346572_1347664_-	PRK05382, PRK05382, chorismate synthase; Validated	NA|264aa|down_4|NZ_CP014991.1_1347660_1348452_-	PRK00102, rnc, ribonuclease III; Reviewed	NA|343aa|down_5|NZ_CP014991.1_1348600_1349629_+	NA	NA|326aa|down_6|NZ_CP014991.1_1349618_1350596_+	PRK15068, PRK15068, tRNA 5-methoxyuridine(34)/uridine 5-oxyacetic acid(34) synthase CmoB	NA|147aa|down_7|NZ_CP014991.1_1350605_1351046_+	COG2050, PaaI, HGG motif-containing thioesterase, possibly involved in aromatic compounds catabolism [Secondary metabolites biosynthesis,    transport, and catabolism]	NA|694aa|down_8|NZ_CP014991.1_1351054_1353136_-	PRK11824, PRK11824, polynucleotide phosphorylase/polyadenylase; Provisional	NA|229aa|down_9|NZ_CP014991.1_1353132_1353819_-	COG1926, COG1926, Predicted phosphoribosyltransferases [General function prediction only]
GCF_001602095.1_ASM160209v1	NZ_CP014991	Helicobacter himalayensis strain YS1, complete genome	4	1372758-1372845	4	CRISPRCasFinder	no		DEDDh,cas3	Orphan	CAACATTAAACAATCAAGGCACTATAA	27	1	1	1372785-1372817	NZ_CP014991.1_1370327-1370295	NA	1	1	Orphan	DEDDh,cas3	NA|48aa|up_4|NZ_CP014991.1_1363610_1363754_-,NA|355aa|up_1|NZ_CP014991.1_1368627_1369692_-,NA|451aa|up_0|NZ_CP014991.1_1370016_1371369_-,NA|314aa|down_4|NZ_CP014991.1_1383034_1383976_-	NA|356aa|up_9|NZ_CP014991.1_1359419_1360487_-	pfam04551, GcpE, GcpE protein	NA|179aa|up_8|NZ_CP014991.1_1360610_1361147_+	pfam04849, HAP1_N, HAP1 N-terminal conserved region	NA|380aa|up_7|NZ_CP014991.1_1361147_1362287_+	PRK14089, PRK14089, lipid-A-disaccharide synthase	NA|68aa|up_6|NZ_CP014991.1_1362339_1362543_+	TIGR02081, conserved_hypothetical_protein, methionine biosynthesis protein MetW	NA|188aa|up_5|NZ_CP014991.1_1362521_1363085_+	pfam13489, Methyltransf_23, Methyltransferase domain	NA|48aa|up_4|NZ_CP014991.1_1363610_1363754_-	NA	NA|474aa|up_3|NZ_CP014991.1_1364049_1365471_-	COG2863, COG2863, Cytochrome c553 [Energy production and conversion]	NA|1068aa|up_2|NZ_CP014991.1_1365461_1368665_-	COG1511, COG1511, Predicted membrane protein [Function unknown]	NA|355aa|up_1|NZ_CP014991.1_1368627_1369692_-	NA	NA|451aa|up_0|NZ_CP014991.1_1370016_1371369_-	NA	NA|474aa|down_0|NZ_CP014991.1_1377636_1379058_+	COG2863, COG2863, Cytochrome c553 [Energy production and conversion]	NA|241aa|down_1|NZ_CP014991.1_1379441_1380164_-	COG0546, Gph, Predicted phosphatases [General function prediction only]	NA|334aa|down_2|NZ_CP014991.1_1380253_1381255_-	COG2855, COG2855, Predicted membrane protein [Function unknown]	NA|540aa|down_3|NZ_CP014991.1_1381410_1383030_+	cd06420, GT2_Chondriotin_Pol_N, N-terminal domain of Chondroitin polymerase functions as a GalNAc transferase	NA|314aa|down_4|NZ_CP014991.1_1383034_1383976_-	NA	NA|395aa|down_5|NZ_CP014991.1_1383972_1385157_-	PRK13342, PRK13342, recombination factor protein RarA; Reviewed	NA|114aa|down_6|NZ_CP014991.1_1385159_1385501_-	cd04766, HTH_HspR, Helix-Turn-Helix DNA binding domain of the HspR transcription regulator	NA|296aa|down_7|NZ_CP014991.1_1385780_1386668_-	PRK14299, PRK14299, chaperone protein DnaJ; Provisional	NA|502aa|down_8|NZ_CP014991.1_1386809_1388315_+	PRK09604, PRK09604, tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD	NA|406aa|down_9|NZ_CP014991.1_1388489_1389707_+	PRK11099, PRK11099, putative inner membrane protein; Provisional
GCF_001602095.1_ASM160209v1	NZ_CP014991	Helicobacter himalayensis strain YS1, complete genome	5	1373019-1373105	5	CRISPRCasFinder	no		DEDDh,cas3	Orphan	CAACATTAAACAATCAAGGCACTATAA	27	1	1	1373046-1373078	NZ_CP014991.1_1370065-1370033	NA	1	1	Orphan	DEDDh,cas3	NA|48aa|up_4|NZ_CP014991.1_1363610_1363754_-,NA|355aa|up_1|NZ_CP014991.1_1368627_1369692_-,NA|451aa|up_0|NZ_CP014991.1_1370016_1371369_-,NA|314aa|down_4|NZ_CP014991.1_1383034_1383976_-	NA|356aa|up_9|NZ_CP014991.1_1359419_1360487_-	pfam04551, GcpE, GcpE protein	NA|179aa|up_8|NZ_CP014991.1_1360610_1361147_+	pfam04849, HAP1_N, HAP1 N-terminal conserved region	NA|380aa|up_7|NZ_CP014991.1_1361147_1362287_+	PRK14089, PRK14089, lipid-A-disaccharide synthase	NA|68aa|up_6|NZ_CP014991.1_1362339_1362543_+	TIGR02081, conserved_hypothetical_protein, methionine biosynthesis protein MetW	NA|188aa|up_5|NZ_CP014991.1_1362521_1363085_+	pfam13489, Methyltransf_23, Methyltransferase domain	NA|48aa|up_4|NZ_CP014991.1_1363610_1363754_-	NA	NA|474aa|up_3|NZ_CP014991.1_1364049_1365471_-	COG2863, COG2863, Cytochrome c553 [Energy production and conversion]	NA|1068aa|up_2|NZ_CP014991.1_1365461_1368665_-	COG1511, COG1511, Predicted membrane protein [Function unknown]	NA|355aa|up_1|NZ_CP014991.1_1368627_1369692_-	NA	NA|451aa|up_0|NZ_CP014991.1_1370016_1371369_-	NA	NA|474aa|down_0|NZ_CP014991.1_1377636_1379058_+	COG2863, COG2863, Cytochrome c553 [Energy production and conversion]	NA|241aa|down_1|NZ_CP014991.1_1379441_1380164_-	COG0546, Gph, Predicted phosphatases [General function prediction only]	NA|334aa|down_2|NZ_CP014991.1_1380253_1381255_-	COG2855, COG2855, Predicted membrane protein [Function unknown]	NA|540aa|down_3|NZ_CP014991.1_1381410_1383030_+	cd06420, GT2_Chondriotin_Pol_N, N-terminal domain of Chondroitin polymerase functions as a GalNAc transferase	NA|314aa|down_4|NZ_CP014991.1_1383034_1383976_-	NA	NA|395aa|down_5|NZ_CP014991.1_1383972_1385157_-	PRK13342, PRK13342, recombination factor protein RarA; Reviewed	NA|114aa|down_6|NZ_CP014991.1_1385159_1385501_-	cd04766, HTH_HspR, Helix-Turn-Helix DNA binding domain of the HspR transcription regulator	NA|296aa|down_7|NZ_CP014991.1_1385780_1386668_-	PRK14299, PRK14299, chaperone protein DnaJ; Provisional	NA|502aa|down_8|NZ_CP014991.1_1386809_1388315_+	PRK09604, PRK09604, tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD	NA|406aa|down_9|NZ_CP014991.1_1388489_1389707_+	PRK11099, PRK11099, putative inner membrane protein; Provisional
GCF_001602095.1_ASM160209v1	NZ_CP014991	Helicobacter himalayensis strain YS1, complete genome	6	1744318-1744439	6	CRISPRCasFinder	no		DEDDh,cas3	Orphan	GGTGCAATGCGGGCGCGTCTCTGCGTTGCGGGTGCGGGCGCGGGTG	46	0	0	NA	NA	NA	1	1	Orphan	DEDDh,cas3	NA|299aa|up_9|NZ_CP014991.1_1732953_1733850_-,NA|65aa|up_8|NZ_CP014991.1_1734024_1734219_-,NA|570aa|up_7|NZ_CP014991.1_1734264_1735974_-,NA|62aa|up_3|NZ_CP014991.1_1739285_1739471_+,NA|167aa|up_0|NZ_CP014991.1_1743483_1743984_-,NA|201aa|down_2|NZ_CP014991.1_1746461_1747064_-,NA|120aa|down_3|NZ_CP014991.1_1747074_1747434_-,NA|137aa|down_5|NZ_CP014991.1_1748099_1748510_-,NA|194aa|down_6|NZ_CP014991.1_1748523_1749105_-,NA|319aa|down_7|NZ_CP014991.1_1754638_1755595_-,NA|281aa|down_8|NZ_CP014991.1_1755582_1756425_-,NA|278aa|down_9|NZ_CP014991.1_1756424_1757258_-	NA|299aa|up_9|NZ_CP014991.1_1732953_1733850_-	NA	NA|65aa|up_8|NZ_CP014991.1_1734024_1734219_-	NA	NA|570aa|up_7|NZ_CP014991.1_1734264_1735974_-	NA	NA|400aa|up_6|NZ_CP014991.1_1736193_1737393_-	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms]	NA|237aa|up_5|NZ_CP014991.1_1737382_1738093_-	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|227aa|up_4|NZ_CP014991.1_1738355_1739036_+	pfam05708, Peptidase_C92, Permuted papain-like amidase enzyme, YaeF/YiiX, C92 family	NA|62aa|up_3|NZ_CP014991.1_1739285_1739471_+	NA	NA|103aa|up_2|NZ_CP014991.1_1739535_1739844_-	pfam12674, Zn_ribbon_2, Putative zinc ribbon domain	NA|704aa|up_1|NZ_CP014991.1_1739897_1742009_-	COG3586, COG3586, Uncharacterized conserved protein [Function unknown]	NA|167aa|up_0|NZ_CP014991.1_1743483_1743984_-	NA	NA|72aa|down_0|NZ_CP014991.1_1745003_1745219_+	COG4800, COG4800, Predicted transcriptional regulator with an HTH domain [Transcription]	NA|392aa|down_1|NZ_CP014991.1_1745262_1746438_-	pfam13252, DUF4043, Protein of unknown function (DUF4043)	NA|201aa|down_2|NZ_CP014991.1_1746461_1747064_-	NA	NA|120aa|down_3|NZ_CP014991.1_1747074_1747434_-	NA	NA|196aa|down_4|NZ_CP014991.1_1747511_1748099_-	pfam13518, HTH_28, Helix-turn-helix domain	NA|137aa|down_5|NZ_CP014991.1_1748099_1748510_-	NA	NA|194aa|down_6|NZ_CP014991.1_1748523_1749105_-	NA	NA|319aa|down_7|NZ_CP014991.1_1754638_1755595_-	NA	NA|281aa|down_8|NZ_CP014991.1_1755582_1756425_-	NA	NA|278aa|down_9|NZ_CP014991.1_1756424_1757258_-	NA
