assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_001596775.2_ASM159677v2	NZ_CP014790	Listeria monocytogenes strain 2015TE24968 chromosome, complete genome	1	204732-204883	1	CRISPRCasFinder	no	cas3	csa3,DinG,cas3,WYL,DEDDh,csn2,cas2,cas1,cas9	Unclear	CCGCCACCACCTACGGATGAAGAGTTAAGACTTGCTTTGCCAGAGAC	47	0	0	NA	NA	NA	1	1	Unclear	csa3,DinG,cas3,WYL,DEDDh,csn2,cas2,cas1,cas9,cas5	NA,NA	NA|231aa|up_9|NZ_CP014790.1_191978_192671_+	cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and cell division protein	NA|403aa|up_8|NZ_CP014790.1_192667_193876_+	PRK10535, PRK10535, macrolide ABC transporter ATP-binding protein/permease MacB	NA|103aa|up_7|NZ_CP014790.1_194560_194869_+	PRK13259, PRK13259, septation regulator SpoVG	NA|103aa|up_6|NZ_CP014790.1_194988_195297_+	PRK13259, PRK13259, septation regulator SpoVG	NA|458aa|up_5|NZ_CP014790.1_195683_197057_+	PRK14354, glmU, bifunctional UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase GlmU	NA|319aa|up_4|NZ_CP014790.1_197107_198064_+	PRK01259, PRK01259, ribose-phosphate diphosphokinase	NA|238aa|up_3|NZ_CP014790.1_198106_198820_-	COG0664, Crp, cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases [Signal transduction mechanisms]	NA|318aa|up_2|NZ_CP014790.1_199090_200044_-	cd00137, PI-PLCc, Catalytic domain of prokaryotic and eukaryotic phosphoinositide-specific phospholipase C	NA|530aa|up_1|NZ_CP014790.1_200285_201875_+	pfam01289, Thiol_cytolysin, Thiol-activated cytolysin	NA|511aa|up_0|NZ_CP014790.1_202205_203738_+	COG3227, LasB, Zinc metalloprotease (elastase) [Amino acid transport and metabolism]	NA|290aa|down_0|NZ_CP014790.1_205892_206762_+	smart00770, Zn_dep_PLPC, Zinc dependent phospholipase C (alpha toxin)	NA|108aa|down_1|NZ_CP014790.1_206833_207157_+	pfam17606, DUF5502, Family of unknown function (DUF5502)	NA|154aa|down_2|NZ_CP014790.1_207291_207753_+	COG4808, COG4808, Uncharacterized protein conserved in bacteria [Function unknown]	NA|111aa|down_3|NZ_CP014790.1_207803_208136_-	PRK01119, PRK01119, putative heavy metal-binding protein	NA|225aa|down_4|NZ_CP014790.1_208202_208877_-	pfam08713, DNA_alkylation, DNA alkylation repair enzyme	NA|314aa|down_5|NZ_CP014790.1_208953_209895_-	PRK00066, ldh, L-lactate dehydrogenase; Reviewed	NA|208aa|down_6|NZ_CP014790.1_210188_210812_+	PRK05618, PRK05618, 50S ribosomal protein L25/general stress protein Ctc; Reviewed	NA|195aa|down_7|NZ_CP014790.1_210901_211486_+	pfam13508, Acetyltransf_7, Acetyltransferase (GNAT) domain	NA|187aa|down_8|NZ_CP014790.1_211592_212153_+	PRK05426, PRK05426, peptidyl-tRNA hydrolase; Provisional	cas3|1180aa|down_9|NZ_CP014790.1_212267_215807_+	COG1197, Mfd, Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]
GCF_001596775.2_ASM159677v2	NZ_CP014790	Listeria monocytogenes strain 2015TE24968 chromosome, complete genome	2	523752-524295	1,2,1	PILER-CR,CRISPRCasFinder,CRT	no		csa3,DinG,cas3,WYL,DEDDh,csn2,cas2,cas1,cas9	Orphan	GTTTTAGTTACTTATTGTGAAATGTAAAT,GTTTTAGTTACTTATTGTGAAATGTAAAT,GTTTTAGTTACTTATTGTGAAATGTAAAT	29,29,29	0	0	NA	NA	I-A:I-A:I-A	8,8,8	8	Orphan	csa3,DinG,cas3,WYL,DEDDh,csn2,cas2,cas1,cas9,cas5	NA|133aa|up_5|NZ_CP014790.1_518740_519139_+,NA|193aa|down_0|NZ_CP014790.1_524686_525265_+	NA|217aa|up_9|NZ_CP014790.1_514803_515454_+	COG0176, MipB, Transaldolase [Carbohydrate transport and metabolism]	NA|687aa|up_8|NZ_CP014790.1_515562_517623_+	COG3711, BglG, Transcriptional antiterminator [Transcription]	NA|201aa|up_7|NZ_CP014790.1_517626_518229_+	COG0794, GutQ, Predicted sugar phosphate isomerase involved in capsule formation [Cell envelope biogenesis, outer membrane]	NA|156aa|up_6|NZ_CP014790.1_518256_518724_+	cd00211, PTS_IIA_fru, PTS_IIA, PTS system, fructose/mannitol specific IIA subunit	NA|133aa|up_5|NZ_CP014790.1_518740_519139_+	NA	NA|217aa|up_4|NZ_CP014790.1_519149_519800_+	COG0036, Rpe, Pentose-5-phosphate-3-epimerase [Carbohydrate transport and metabolism]	NA|349aa|up_3|NZ_CP014790.1_519796_520843_+	cd08236, sugar_DH, NAD(P)-dependent sugar dehydrogenases	NA|98aa|up_2|NZ_CP014790.1_520858_521152_+	cd05566, PTS_IIB_galactitol, PTS_IIB_galactitol: subunit IIB of enzyme II (EII) of the galactitol-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS)	NA|424aa|up_1|NZ_CP014790.1_521166_522438_+	COG3775, GatC, Phosphotransferase system, galactitol-specific IIC component [Carbohydrate transport and metabolism]	NA|312aa|up_0|NZ_CP014790.1_522577_523513_+	PRK01259, PRK01259, ribose-phosphate diphosphokinase	NA|193aa|down_0|NZ_CP014790.1_524686_525265_+	NA	NA|227aa|down_1|NZ_CP014790.1_525372_526053_+	cd01741, GATase1_1, Subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain	NA|120aa|down_2|NZ_CP014790.1_526077_526437_-	TIGR02058, lin0512_fam, conserved hypothetical protein	NA|153aa|down_3|NZ_CP014790.1_526443_526902_-	pfam12802, MarR_2, MarR family	NA|612aa|down_4|NZ_CP014790.1_527283_529119_+	NF033186, internalin_K, class 1 internalin InlK	NA|144aa|down_5|NZ_CP014790.1_529219_529651_+	pfam00582, Usp, Universal stress protein family	NA|477aa|down_6|NZ_CP014790.1_529697_531128_-	COG2843, PgsA, Putative enzyme of poly-gamma-glutamate biosynthesis (capsule formation) [Cell envelope biogenesis, outer membrane]	NA|272aa|down_7|NZ_CP014790.1_531248_532064_-	COG0406, phoE, Broad specificity phosphatase PhoE and related phosphatases [General function prediction only]	NA|123aa|down_8|NZ_CP014790.1_532344_532713_-	COG3759, COG3759, Predicted membrane protein [Function unknown]	NA|472aa|down_9|NZ_CP014790.1_532859_534275_+	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily
GCF_001596775.2_ASM159677v2	NZ_CP014790	Listeria monocytogenes strain 2015TE24968 chromosome, complete genome	3	2629589-2631606	3,2,2	CRISPRCasFinder,CRT,PILER-CR	no	csn2,cas2,cas1,cas9	csa3,DinG,cas3,WYL,DEDDh,csn2,cas2,cas1,cas9	Type II-B,Type II-C,Type II-A	GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC,GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC,GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	36,36,36	0	0	NA	NA	II-A,II-B:II-A,II-B:II-A,II-B	30,30,8	30	TypeII-B,TypeII-C,TypeII-A	csa3,DinG,cas3,WYL,DEDDh,csn2,cas2,cas1,cas9,cas5	NA|120aa|up_0|NZ_CP014790.1_2628681_2629041_-,NA|160aa|down_4|NZ_CP014790.1_2638105_2638585_-	NA|159aa|up_9|NZ_CP014790.1_2611286_2611763_-	COG2427, COG2427, Uncharacterized conserved protein [Function unknown]	NA|996aa|up_8|NZ_CP014790.1_2611762_2614750_-	COG3383, COG3383, Uncharacterized anaerobic dehydrogenase [General function prediction only]	NA|281aa|up_7|NZ_CP014790.1_2615248_2616091_+	COG1912, COG1912, Uncharacterized conserved protein [Function unknown]	NA|494aa|up_6|NZ_CP014790.1_2616138_2617620_-	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily	NA|296aa|up_5|NZ_CP014790.1_2617720_2618608_-	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|343aa|up_4|NZ_CP014790.1_2624399_2625428_-	pfam10609, ParA, NUBPL iron-transfer P-loop NTPase	NA|509aa|up_3|NZ_CP014790.1_2625696_2627223_+	COG1705, FlgJ, Muramidase (flagellum-specific) [Cell motility and secretion / Intracellular trafficking and secretion]	NA|284aa|up_2|NZ_CP014790.1_2627264_2628116_-	cd19133, AKR_AKR5F1, the AKR5F family of aldo-keto reductase (AKR)	NA|141aa|up_1|NZ_CP014790.1_2628137_2628560_-	cd01109, HTH_YyaN, Helix-Turn-Helix DNA binding domain of the MerR-like transcription regulators YyaN and YraB	NA|120aa|up_0|NZ_CP014790.1_2628681_2629041_-	NA	csn2|221aa|down_0|NZ_CP014790.1_2631734_2632397_-	cd09758, Csn2, CRISPR/Cas system-associated protein Csn2	cas2|114aa|down_1|NZ_CP014790.1_2632386_2632728_-	COG3512, COG3512, CRISPR-associated protein, Cas2 homolog [Defense mechanisms]	cas1|289aa|down_2|NZ_CP014790.1_2632724_2633591_-	cd09720, Cas1_II, CRISPR/Cas system-associated protein Cas1	cas9|1335aa|down_3|NZ_CP014790.1_2633591_2637596_-	COG3513, COG3513, Predicted CRISPR-associated nuclease, contains McrA/HNH-nuclease and RuvC-like nuclease domain [Defense mechanisms]	NA|160aa|down_4|NZ_CP014790.1_2638105_2638585_-	NA	NA|131aa|down_5|NZ_CP014790.1_2638809_2639202_-	PRK00132, rpsI, 30S ribosomal protein S9; Reviewed	NA|146aa|down_6|NZ_CP014790.1_2639223_2639661_-	PRK09216, rplM, 50S ribosomal protein L13; Reviewed	NA|249aa|down_7|NZ_CP014790.1_2639855_2640602_-	PRK00021, truA, tRNA pseudouridine(38-40) synthase TruA	NA|266aa|down_8|NZ_CP014790.1_2640607_2641405_-	COG0619, CbiQ, ABC-type cobalt transport system, permease component CbiQ and related transporters [Inorganic ion transport and metabolism]	NA|289aa|down_9|NZ_CP014790.1_2641407_2642274_-	PRK13634, cbiO, cobalt transporter ATP-binding subunit; Provisional
GCF_001596775.2_ASM159677v2	NZ_CP014790	Listeria monocytogenes strain 2015TE24968 chromosome, complete genome	4	2734254-2734364	4	CRISPRCasFinder	no		csa3,DinG,cas3,WYL,DEDDh,csn2,cas2,cas1,cas9	Orphan	AGCGATGATTTAATCCTTCCCAGAACTTTCAAAA	34	0	0	NA	NA	NA	1	1	Orphan	csa3,DinG,cas3,WYL,DEDDh,csn2,cas2,cas1,cas9,cas5	NA,NA|74aa|down_2|NZ_CP014790.1_2735133_2735355_-,NA|52aa|down_4|NZ_CP014790.1_2737296_2737452_+,NA|214aa|down_5|NZ_CP014790.1_2737484_2738126_-	NA|330aa|up_9|NZ_CP014790.1_2726179_2727169_+	PRK14481, PRK14481, dihydroxyacetone kinase subunit DhaK; Provisional	NA|199aa|up_8|NZ_CP014790.1_2727190_2727787_+	TIGR02365, dha_L_ycgS, dihydroxyacetone kinase, phosphoprotein-dependent, L subunit	NA|125aa|up_7|NZ_CP014790.1_2727790_2728165_+	PRK14484, PRK14484, phosphotransferase mannnose-specific family component IIA; Provisional	NA|284aa|up_6|NZ_CP014790.1_2728270_2729122_+	COG1737, RpiR, Transcriptional regulators [Transcription]	NA|280aa|up_5|NZ_CP014790.1_2729240_2730080_+	cd07516, HAD_Pase, phosphatase, similar to Escherichia coli Cof and Thermotoga maritima TM0651; belongs to the haloacid dehalogenase-like superfamily	NA|281aa|up_4|NZ_CP014790.1_2730200_2731043_+	COG0656, ARA1, Aldo/keto reductases, related to diketogulonate reductase [General function prediction only]	NA|82aa|up_3|NZ_CP014790.1_2731088_2731334_-	pfam10704, DUF2508, Protein of unknown function (DUF2508)	NA|199aa|up_2|NZ_CP014790.1_2731348_2731945_-	PRK00076, recR, recombination protein RecR; Reviewed	NA|106aa|up_1|NZ_CP014790.1_2732053_2732371_-	PRK00153, PRK00153, YbaB/EbfC family nucleoid-associated protein	NA|580aa|up_0|NZ_CP014790.1_2732400_2734140_-	PRK05563, PRK05563, DNA polymerase III subunits gamma and tau; Validated	NA|155aa|down_0|NZ_CP014790.1_2734466_2734931_-	pfam11687, DUF3284, Domain of unknown function (DUF3284)	NA|61aa|down_1|NZ_CP014790.1_2734948_2735131_-	pfam11384, DUF3188, Protein of unknown function (DUF3188)	NA|74aa|down_2|NZ_CP014790.1_2735133_2735355_-	NA	NA|455aa|down_3|NZ_CP014790.1_2735489_2736854_-	COG1455, CelB, Phosphotransferase system cellobiose-specific component IIC [Carbohydrate transport and metabolism]	NA|52aa|down_4|NZ_CP014790.1_2737296_2737452_+	NA	NA|214aa|down_5|NZ_CP014790.1_2737484_2738126_-	NA	NA|505aa|down_6|NZ_CP014790.1_2738823_2740338_-	cd07770, FGGY_GntK, Gluconate kinases; a subfamily of the FGGY family of carbohydrate kinases	NA|313aa|down_7|NZ_CP014790.1_2740452_2741391_-	COG3786, COG3786, Uncharacterized protein conserved in bacteria [Function unknown]	NA|316aa|down_8|NZ_CP014790.1_2741433_2742381_-	TIGR01167, Zinc_metalloprotease_ZmpB, LPXTG-motif cell wall anchor domain	NA|580aa|down_9|NZ_CP014790.1_2742521_2744261_-	COG4987, CydC, ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
