assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_001594265.1_ASM159426v1	NZ_CP012959	Aggregatibacter actinomycetemcomitans strain 624 chromosome, complete genome	1	153343-153574	1,1,1	CRISPRCasFinder,CRT,PILER-CR	no	cas2,cas1,cas4,cas7,cas8c,cas5,cas3	DEDDh,cas2,cas1,cas4,cas7,cas8c,cas5,cas3,WYL,cas8f,cas5f,cas7f,cas6f,cas3-cas2,PD-DExK,cas3HD,DinG	Type I-U, Type I-U?,Type I-C	ATTTCAACACACAGCCACCCGAAGGTGGCTGC,ATTTCAACACACAGCCACCCGAAGGTGGCTGC,ATTTCAACACACAGCCACCCGAAGGTGGCTGC	32,32,32	0	0	NA	NA	NA:NA:NA	3,3,2	3	TypeI-U,TypeI-U?,TypeI-C	DEDDh,cas2,cas1,cas4,cas7,cas8c,cas5,cas3,WYL,cas8f,cas5f,cas7f,cas6f,cas3-cas2,PD-DExK,cas3HD,DinG	NA,NA	NA|96aa|up_9|NZ_CP012959.1_139268_139556_-	PRK00199, ihfB, integration host factor subunit beta; Reviewed	NA|549aa|up_8|NZ_CP012959.1_139617_141264_-	PRK06299, rpsA, 30S ribosomal protein S1; Reviewed	NA|226aa|up_7|NZ_CP012959.1_141361_142039_-	PRK00023, cmk, (d)CMP kinase	NA|298aa|up_6|NZ_CP012959.1_142031_142925_-	pfam04393, DUF535, Protein of unknown function (DUF535)	NA|789aa|up_5|NZ_CP012959.1_143217_145584_+	pfam07715, Plug, TonB-dependent Receptor Plug Domain	NA|925aa|up_4|NZ_CP012959.1_145661_148436_+	COG0612, PqqL, Predicted Zn-dependent peptidases [General function prediction only]	NA|111aa|up_3|NZ_CP012959.1_148502_148835_-	COG1687, AzlD, Predicted branched-chain amino acid permeases (azaleucine resistance) [Amino acid transport and metabolism]	NA|243aa|up_2|NZ_CP012959.1_148835_149564_-	TIGR00346, Uncharacterized_membrane_protein_HI_1738, 4-azaleucine resistance probable transporter AzlC	NA|311aa|up_1|NZ_CP012959.1_149568_150501_-	cd08441, PBP2_MetR, The C-terminal substrate binding domain of LysR-type transcriptional regulator metR, which regulates the expression of methionine biosynthetic genes, contains type 2 periplasmic binding fold	NA|759aa|up_0|NZ_CP012959.1_150791_153068_+	PRK05222, PRK05222, 5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase; Provisional	cas2|98aa|down_0|NZ_CP012959.1_153765_154059_-	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2	cas1|338aa|down_1|NZ_CP012959.1_154062_155076_-	TIGR03640, cas1_DVULG, CRISPR-associated endonuclease Cas1, subtype I-C/DVULG	cas4|216aa|down_2|NZ_CP012959.1_157030_157678_-	TIGR00372, conserved_hypothetical_protein, CRISPR-associated protein Cas4	cas7|298aa|down_3|NZ_CP012959.1_157853_158747_-	cd09689, Cas7_I-C, CRISPR/Cas system-associated RAMP superfamily protein Cas7	cas8c|678aa|down_4|NZ_CP012959.1_158768_160802_-	cd09757, Cas8c_I-C, CRISPR/Cas system-associated protein Cas8c	cas5|260aa|down_5|NZ_CP012959.1_160798_161578_-	cd09651, Cas5_I-C, CRISPR/Cas system-associated RAMP superfamily protein Cas5	cas3|822aa|down_6|NZ_CP012959.1_161586_164052_-	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms]	NA|978aa|down_7|NZ_CP012959.1_164251_167185_+	PRK11072, PRK11072, bifunctional [glutamate--ammonia ligase]-adenylyl-L-tyrosine phosphorylase/[glutamate--ammonia-ligase] adenylyltransferase	NA|100aa|down_8|NZ_CP012959.1_167220_167520_-	smart00530, HTH_XRE, Helix-turn-helix XRE-family like proteins	NA|117aa|down_9|NZ_CP012959.1_167516_167867_-	COG4683, COG4683, Uncharacterized protein conserved in bacteria [Function unknown]
GCF_001594265.1_ASM159426v1	NZ_CP012959	Aggregatibacter actinomycetemcomitans strain 624 chromosome, complete genome	2	236345-237453	2,2,2	PILER-CR,CRISPRCasFinder,CRT	no		DEDDh,cas2,cas1,cas4,cas7,cas8c,cas5,cas3,WYL,cas8f,cas5f,cas7f,cas6f,cas3-cas2,PD-DExK,cas3HD,DinG	Orphan	CTTCACTGCCGAATAGGCAGCTTAGAAA,CTTCACTGCCGAATAGGCAGCTTAGAAA,CTTCACTGCCGAATAGGCAGCTTAGAAA	28,28,28	1	1	236553-236584	NZ_CP012959.1_2036399-2036368	I-F:I-F:I-F	18,18,18	18	Orphan	DEDDh,cas2,cas1,cas4,cas7,cas8c,cas5,cas3,WYL,cas8f,cas5f,cas7f,cas6f,cas3-cas2,PD-DExK,cas3HD,DinG	NA|168aa|up_8|NZ_CP012959.1_228142_228646_-,NA|54aa|up_2|NZ_CP012959.1_233416_233578_+,NA	NA|218aa|up_9|NZ_CP012959.1_227489_228143_-	PRK06265, PRK06265, cobalt transporter CbiM	NA|168aa|up_8|NZ_CP012959.1_228142_228646_-	NA	NA|232aa|up_7|NZ_CP012959.1_228652_229348_-	COG5266, CbiK, ABC-type Co2+ transport system, periplasmic component [Inorganic ion transport and metabolism]	NA|231aa|up_6|NZ_CP012959.1_229526_230219_-	PRK05584, PRK05584, 5'-methylthioadenosine/adenosylhomocysteine nucleosidase	NA|224aa|up_5|NZ_CP012959.1_230235_230907_-	cd03019, DsbA_DsbA, DsbA family, DsbA subfamily; DsbA is a monomeric thiol disulfide oxidoreductase protein containing a redox active CXXC motif imbedded in a TRX fold	NA|574aa|up_4|NZ_CP012959.1_230915_232637_-	PRK11070, PRK11070, single-stranded-DNA-specific exonuclease RecJ	NA|228aa|up_3|NZ_CP012959.1_232649_233333_-	PRK10877, PRK10877, protein disulfide isomerase II DsbC; Provisional	NA|54aa|up_2|NZ_CP012959.1_233416_233578_+	NA	NA|343aa|up_1|NZ_CP012959.1_233570_234599_+	PRK00578, prfB, peptide chain release factor 2; Validated	NA|503aa|up_0|NZ_CP012959.1_234655_236164_+	PRK00484, lysS, lysyl-tRNA synthetase; Reviewed	NA|34aa|down_0|NZ_CP012959.1_237548_237650_+	COG2963, COG2963, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|448aa|down_1|NZ_CP012959.1_239287_240631_-	cd17312, MFS_OPA_SLC37, Organophosphate:Pi antiporter/Solute Carrier family 37 of the Major Facilitator Superfamily of transporters	NA|268aa|down_2|NZ_CP012959.1_240648_241452_-	COG0483, SuhB, Archaeal fructose-1,6-bisphosphatase and related enzymes of inositol monophosphatase family [Carbohydrate transport and metabolism]	NA|277aa|down_3|NZ_CP012959.1_241715_242546_+	COG3718, IolB, Uncharacterized enzyme involved in inositol metabolism [Carbohydrate transport and metabolism]	NA|385aa|down_4|NZ_CP012959.1_243476_244631_-	COG0790, COG0790, FOG: TPR repeat, SEL1 subfamily [General function prediction only]	NA|356aa|down_5|NZ_CP012959.1_244630_245698_-	cd09143, PLDc_vPLD1_2_like_bac_2, Catalytic domain, repeat 2, of uncharacterized bacterial proteins with similarity to vertebrate phospholipases, PLD1 and PLD2	NA|380aa|down_6|NZ_CP012959.1_245694_246834_-	cd09138, PLDc_vPLD1_2_yPLD_like_1, Catalytic domain, repeat 1, of vertebrate phospholipases, PLD1 and PLD2, yeast PLDs, and similar proteins	NA|741aa|down_7|NZ_CP012959.1_246837_249060_-	TIGR03361, VI_Rhs_Vgr, type VI secretion system Vgr family protein	NA|57aa|down_8|NZ_CP012959.1_249056_249227_-	TIGR03361, VI_Rhs_Vgr, type VI secretion system Vgr family protein	NA|329aa|down_9|NZ_CP012959.1_249757_250744_+	PRK11303, PRK11303, catabolite repressor/activator
GCF_001594265.1_ASM159426v1	NZ_CP012959	Aggregatibacter actinomycetemcomitans strain 624 chromosome, complete genome	3	2009487-2009916	3,3,3	PILER-CR,CRISPRCasFinder,CRT	no	cas3HD,cas5,cas7,cas4	DEDDh,cas2,cas1,cas4,cas7,cas8c,cas5,cas3,WYL,cas8f,cas5f,cas7f,cas6f,cas3-cas2,PD-DExK,cas3HD,DinG	Unclear	GTTTCAACACACAGCCACCCGAAGGTGGCTGC,GCAGCCACCTTCGGGTGGCTGTGTGTTGAAAC,GCAGCCACCTTCGGGTGGCTGTGTGTTGAAAC	32,32,32	0	0	NA	NA	NA:NA:NA	5,6,6	6	Unclear	DEDDh,cas2,cas1,cas4,cas7,cas8c,cas5,cas3,WYL,cas8f,cas5f,cas7f,cas6f,cas3-cas2,PD-DExK,cas3HD,DinG	NA|198aa|up_8|NZ_CP012959.1_1996665_1997259_+,NA|248aa|up_0|NZ_CP012959.1_2008072_2008816_+,NA	NA|959aa|up_9|NZ_CP012959.1_1993759_1996636_+	cd18011, DEXDc_RapA, DEXH-box helicase domain of RapA	NA|198aa|up_8|NZ_CP012959.1_1996665_1997259_+	NA	NA|314aa|up_7|NZ_CP012959.1_1997242_1998184_+	pfam16162, DUF4868, Domain of unknown function (DUF4868)	NA|579aa|up_6|NZ_CP012959.1_1998197_1999934_+	COG2189, COG2189, Adenine specific DNA methylase Mod [DNA replication, recombination, and repair]	NA|345aa|up_5|NZ_CP012959.1_2000060_2001095_+	pfam13310, Virulence_RhuM, Virulence protein RhuM family	NA|906aa|up_4|NZ_CP012959.1_2001091_2003809_+	pfam04851, ResIII, Type III restriction enzyme, res subunit	cas5|225aa|up_3|NZ_CP012959.1_2003923_2004598_+	cd09752, Cas5_I-C, CRISPR/Cas system-associated RAMP superfamily protein Cas5	cas7|289aa|up_2|NZ_CP012959.1_2006384_2007251_+	pfam05107, Cas_Cas7, CRISPR-associated protein Cas7	cas4|217aa|up_1|NZ_CP012959.1_2007395_2008046_+	TIGR00372, conserved_hypothetical_protein, CRISPR-associated protein Cas4	NA|248aa|up_0|NZ_CP012959.1_2008072_2008816_+	NA	NA|127aa|down_0|NZ_CP012959.1_2010251_2010632_+	PRK06427, PRK06427, bifunctional hydroxy-methylpyrimidine kinase/ hydroxy-phosphomethylpyrimidine kinase; Reviewed	NA|335aa|down_1|NZ_CP012959.1_2010653_2011658_+	TIGR01276, Thiamine-binding_periplasmic_protein, thiamine ABC transporter, periplasmic binding protein	NA|543aa|down_2|NZ_CP012959.1_2011666_2013295_+	PRK09433, thiP, thiamine transporter membrane protein; Reviewed	NA|216aa|down_3|NZ_CP012959.1_2013278_2013926_+	COG3840, ThiQ, ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]	NA|335aa|down_4|NZ_CP012959.1_2013971_2014976_+	TIGR00433, biotin_synthase, biotin synthase	NA|160aa|down_5|NZ_CP012959.1_2015691_2016171_+	PRK11169, PRK11169, leucine-responsive transcriptional regulator Lrp	NA|915aa|down_6|NZ_CP012959.1_2016174_2018919_+	PRK10263, PRK10263, DNA translocase FtsK; Provisional	NA|206aa|down_7|NZ_CP012959.1_2019011_2019629_+	TIGR00547, Outer-membrane_lipoprotein_carrier_protein, periplasmic chaperone LolA	NA|447aa|down_8|NZ_CP012959.1_2019641_2020982_+	PRK13342, PRK13342, recombination factor protein RarA; Reviewed	NA|556aa|down_9|NZ_CP012959.1_2021478_2023146_-	PRK12489, PRK12489, anaerobic C4-dicarboxylate transporter; Reviewed
