assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_001587135.1_ASM158713v1	NZ_CP012939	Ralstonia solanacearum strain UW163 chromosome, complete genome	1	2010416-2011358	1,1,1	PILER-CR,CRISPRCasFinder,CRT	no	cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	csa3,DEDDh,cas3,WYL,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,RT,DinG	Type I-E	GTGTTCCCCGCGTGGGCGGGGATGAACCG,GTGTTCCCCGCGTGGGCGGGGATGAACCG,GTGTTCCCCGCGTGGGCGGGGATGAACCG	29,29,29	0	0	NA	NA	I-E:I-E:I-E	12,15,14	15	TypeI-E	csa3,DEDDh,cas3,WYL,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,RT,DinG	NA|83aa|up_6|NZ_CP012939.1_2003864_2004113_+,NA|108aa|up_4|NZ_CP012939.1_2005323_2005647_+,NA	NA|77aa|up_9|NZ_CP012939.1_1999878_2000109_+	TIGR02811, formate_dehydrogenase_accessory_protein_FdhX, formate dehydrogenase region TAT target	NA|999aa|up_8|NZ_CP012939.1_2000163_2003160_+	cd02752, MopB_Formate-Dh-Na-like, Formate dehydrogenase N, alpha subunit (Formate-Dh-Na) is a major component of nitrate respiration in bacteria such as in the E	NA|229aa|up_7|NZ_CP012939.1_2003175_2003862_+	cd16371, DMSOR_beta_like, uncharacterized subfamily of DMSO Reductase beta subunit family	NA|83aa|up_6|NZ_CP012939.1_2003864_2004113_+	NA	NA|388aa|up_5|NZ_CP012939.1_2004134_2005298_+	COG2864, FdnI, Cytochrome b subunit of formate dehydrogenase [Energy production and conversion]	NA|108aa|up_4|NZ_CP012939.1_2005323_2005647_+	NA	NA|179aa|up_3|NZ_CP012939.1_2005725_2006262_+	pfam00080, Sod_Cu, Copper/zinc superoxide dismutase (SODC)	NA|292aa|up_2|NZ_CP012939.1_2006356_2007232_+	pfam02634, FdhD-NarQ, FdhD/NarQ family	NA|189aa|up_1|NZ_CP012939.1_2007399_2007966_+	PRK00416, dcd, deoxycytidine triphosphate deaminase; Reviewed	NA|760aa|up_0|NZ_CP012939.1_2008047_2010327_+	COG1982, LdcC, Arginine/lysine/ornithine decarboxylases [Amino acid transport and metabolism]	cas8e|523aa|down_0|NZ_CP012939.1_2014335_2015904_+	cd09729, Cse1_I-E, CRISPR/Cas system-associated protein Cse1	cse2gr11|200aa|down_1|NZ_CP012939.1_2015900_2016500_+	cd09731, Cse2_I-E, CRISPR/Cas system-associated protein Cse2	cas7|345aa|down_2|NZ_CP012939.1_2016519_2017554_+	pfam09344, Cas_CT1975, CT1975-like protein	cas5|258aa|down_3|NZ_CP012939.1_2017558_2018332_+	cd09645, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5	cas6e|223aa|down_4|NZ_CP012939.1_2018328_2018997_+	smart01101, CRISPR_assoc, This domain forms an anti-parallel beta strand structure with flanking alpha helical regions	cas1|297aa|down_5|NZ_CP012939.1_2019028_2019919_+	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI	cas2|100aa|down_6|NZ_CP012939.1_2019915_2020215_+	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional	NA|472aa|down_7|NZ_CP012939.1_2021230_2022646_-	PRK00855, PRK00855, argininosuccinate lyase; Provisional	NA|240aa|down_8|NZ_CP012939.1_2022755_2023475_-	COG5343, COG5343, Uncharacterized protein conserved in bacteria [Function unknown]	NA|216aa|down_9|NZ_CP012939.1_2023474_2024122_-	PRK12514, PRK12514, RNA polymerase sigma factor; Provisional
GCF_001587135.1_ASM158713v1	NZ_CP012939	Ralstonia solanacearum strain UW163 chromosome, complete genome	2	2020284-2021106	2,2,2	PILER-CR,CRISPRCasFinder,CRT	no	cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	csa3,DEDDh,cas3,WYL,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,RT,DinG	Type I-E	GTGTTCCCCGCGCCTGCGGGGATGAACCG,GTGTTCCCCGCGCCTGCGGGGATGAACCG,GTGTTCCCCGCGCCTGCGGGGATGAACCG	29,29,29	2	2	2020313-2020344|2020863-2020894	NZ_CP012939.1_3052725-3052756|NZ_CP012941.1_51406-51375	I-E:I-E:I-E	8,13,13	13	TypeI-E	csa3,DEDDh,cas3,WYL,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,RT,DinG	NA,NA	NA|292aa|up_9|NZ_CP012939.1_2006356_2007232_+	pfam02634, FdhD-NarQ, FdhD/NarQ family	NA|189aa|up_8|NZ_CP012939.1_2007399_2007966_+	PRK00416, dcd, deoxycytidine triphosphate deaminase; Reviewed	NA|760aa|up_7|NZ_CP012939.1_2008047_2010327_+	COG1982, LdcC, Arginine/lysine/ornithine decarboxylases [Amino acid transport and metabolism]	cas8e|523aa|up_6|NZ_CP012939.1_2014335_2015904_+	cd09729, Cse1_I-E, CRISPR/Cas system-associated protein Cse1	cse2gr11|200aa|up_5|NZ_CP012939.1_2015900_2016500_+	cd09731, Cse2_I-E, CRISPR/Cas system-associated protein Cse2	cas7|345aa|up_4|NZ_CP012939.1_2016519_2017554_+	pfam09344, Cas_CT1975, CT1975-like protein	cas5|258aa|up_3|NZ_CP012939.1_2017558_2018332_+	cd09645, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5	cas6e|223aa|up_2|NZ_CP012939.1_2018328_2018997_+	smart01101, CRISPR_assoc, This domain forms an anti-parallel beta strand structure with flanking alpha helical regions	cas1|297aa|up_1|NZ_CP012939.1_2019028_2019919_+	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI	cas2|100aa|up_0|NZ_CP012939.1_2019915_2020215_+	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional	NA|472aa|down_0|NZ_CP012939.1_2021230_2022646_-	PRK00855, PRK00855, argininosuccinate lyase; Provisional	NA|240aa|down_1|NZ_CP012939.1_2022755_2023475_-	COG5343, COG5343, Uncharacterized protein conserved in bacteria [Function unknown]	NA|216aa|down_2|NZ_CP012939.1_2023474_2024122_-	PRK12514, PRK12514, RNA polymerase sigma factor; Provisional	NA|206aa|down_3|NZ_CP012939.1_2024316_2024934_+	pfam13668, Ferritin_2, Ferritin-like domain	NA|295aa|down_4|NZ_CP012939.1_2025004_2025889_-	COG0583, LysR, Transcriptional regulator [Transcription]	NA|473aa|down_5|NZ_CP012939.1_2026014_2027433_+	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily	NA|979aa|down_6|NZ_CP012939.1_2027491_2030428_-	PRK00009, PRK00009, phosphoenolpyruvate carboxylase; Reviewed	NA|335aa|down_7|NZ_CP012939.1_2030536_2031541_+	PRK00072, hemC, porphobilinogen deaminase; Reviewed	NA|696aa|down_8|NZ_CP012939.1_2031555_2033643_+	PRK06975, PRK06975, bifunctional uroporphyrinogen-III synthetase/uroporphyrin-III C-methyltransferase; Reviewed	NA|398aa|down_9|NZ_CP012939.1_2033645_2034839_+	COG3071, HemY, Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
GCF_001587135.1_ASM158713v1	NZ_CP012940	Ralstonia solanacearum strain UW163 plasmid unnamed, complete sequence	1	442369-442431	1	CRISPRCasFinder	no		csa3	Orphan	TCGTCGATGTCGATGTCGATGTCG	24	0	0	NA	NA	NA	1	1	Orphan	csa3,DEDDh,cas3,WYL,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,RT,DinG	NA|78aa|up_4|NZ_CP012940.1_438412_438646_-,NA	NA|324aa|up_9|NZ_CP012940.1_434764_435736_+	PRK07048, PRK07048, threo-3-hydroxy-L-aspartate ammonia-lyase	NA|131aa|up_8|NZ_CP012940.1_435732_436125_+	COG0251, TdcF, Putative translation initiation inhibitor, yjgF family [Translation, ribosomal structure and biogenesis]	NA|295aa|up_7|NZ_CP012940.1_436182_437067_-	COG0583, LysR, Transcriptional regulator [Transcription]	NA|146aa|up_6|NZ_CP012940.1_437177_437615_+	COG4125, COG4125, Predicted membrane protein [Function unknown]	NA|219aa|up_5|NZ_CP012940.1_437733_438390_+	COG2771, CsgD, DNA-binding HTH domain-containing proteins [Transcription]	NA|78aa|up_4|NZ_CP012940.1_438412_438646_-	NA	NA|73aa|up_3|NZ_CP012940.1_438697_438916_-	pfam06348, DUF1059, Protein of unknown function (DUF1059)	NA|468aa|up_2|NZ_CP012940.1_439270_440674_-	cd01949, GGDEF, Diguanylate-cyclase (DGC) or GGDEF domain	NA|133aa|up_1|NZ_CP012940.1_440878_441277_-	COG3189, COG3189, Uncharacterized conserved protein [Function unknown]	NA|347aa|up_0|NZ_CP012940.1_441321_442362_-	COG0715, TauA, ABC-type nitrate/sulfonate/bicarbonate transport systems, periplasmic components [Inorganic ion transport and metabolism]	NA|299aa|down_0|NZ_CP012940.1_442481_443378_-	COG0600, TauC, ABC-type nitrate/sulfonate/bicarbonate transport system, permease component [Inorganic ion transport and metabolism]	NA|262aa|down_1|NZ_CP012940.1_443367_444153_-	COG1116, TauB, ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]	NA|241aa|down_2|NZ_CP012940.1_444210_444933_-	COG2188, PhnF, Transcriptional regulators [Transcription]	NA|339aa|down_3|NZ_CP012940.1_445190_446207_+	COG0826, COG0826, Collagenase and related proteases [Posttranslational modification, protein turnover, chaperones]	NA|295aa|down_4|NZ_CP012940.1_446234_447119_+	PRK15447, PRK15447, putative protease; Provisional	NA|142aa|down_5|NZ_CP012940.1_447115_447541_+	COG3154, COG3154, Putative lipid carrier protein [Lipid metabolism]	NA|137aa|down_6|NZ_CP012940.1_447569_447980_+	COG4273, COG4273, Uncharacterized conserved protein [Function unknown]	NA|226aa|down_7|NZ_CP012940.1_448050_448728_-	COG0664, Crp, cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases [Signal transduction mechanisms]	NA|249aa|down_8|NZ_CP012940.1_448732_449479_-	TIGR02495, RADICAL-ACTIVATING_ENZYME, anaerobic ribonucleoside-triphosphate reductase activating protein	NA|59aa|down_9|NZ_CP012940.1_449441_449618_-	pfam13597, NRDD, Anaerobic ribonucleoside-triphosphate reductase
