assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_001580455.1_ASM158045v1	NZ_CP010951	Ramlibacter tataouinensis strain 5-10 chromosome, complete genome	1	894885-895008	1	CRISPRCasFinder	no		csa3,Cas9_archaeal,cas3,DEDDh,DinG	Orphan	GAAAGCGCACCACGTGCGCTGGATTCCGGCCTCCGGCACCAGC	43	0	0	NA	NA	NA	1	1	Orphan	csa3,Cas9_archaeal,cas3,DEDDh,DinG	NA,NA|125aa|down_9|NZ_CP010951.1_904238_904613_+	NA|355aa|up_9|NZ_CP010951.1_884653_885718_+	COG1088, RfbB, dTDP-D-glucose 4,6-dehydratase [Cell envelope biogenesis, outer membrane]	NA|306aa|up_8|NZ_CP010951.1_885717_886635_+	pfam04321, RmlD_sub_bind, RmlD substrate binding domain	NA|327aa|up_7|NZ_CP010951.1_886579_887560_+	TIGR01207, Glucose-1-phosphate_thymidylyltransferase_1, glucose-1-phosphate thymidylyltransferase, short form	NA|185aa|up_6|NZ_CP010951.1_887556_888111_+	pfam00908, dTDP_sugar_isom, dTDP-4-dehydrorhamnose 3,5-epimerase	NA|945aa|up_5|NZ_CP010951.1_888178_891013_+	PRK05729, valS, valyl-tRNA synthetase; Reviewed	NA|332aa|up_4|NZ_CP010951.1_891037_892033_-	cd12173, PGDH_4, Phosphoglycerate dehydrogenases, NAD-binding and catalytic domains	NA|299aa|up_3|NZ_CP010951.1_892142_893039_+	COG1210, GalU, UDP-glucose pyrophosphorylase [Cell envelope biogenesis, outer membrane]	NA|76aa|up_2|NZ_CP010951.1_893052_893280_-	cd00291, SirA_YedF_YeeD, SirA, YedF, and YeeD	NA|176aa|up_1|NZ_CP010951.1_893276_893804_-	COG2816, NPY1, NTP pyrophosphohydrolases containing a Zn-finger, probably nucleic-acid-binding [DNA replication, recombination, and repair]	NA|304aa|up_0|NZ_CP010951.1_893803_894715_-	PRK11761, cysM, cysteine synthase CysM	NA|311aa|down_0|NZ_CP010951.1_895092_896025_-	cd05266, SDR_a4, atypical (a) SDRs, subgroup 4	NA|361aa|down_1|NZ_CP010951.1_896064_897147_+	PRK07609, PRK07609, CDP-6-deoxy-delta-3,4-glucoseen reductase; Validated	NA|324aa|down_2|NZ_CP010951.1_897336_898308_+	cd13578, PBP2_Bug27, Aromatic solutes transporter of Bug (Bordetella uptake gene) protein family;  contains the type 2 periplasmic binding fold	NA|202aa|down_3|NZ_CP010951.1_898408_899014_+	pfam01389, OmpA_membrane, OmpA-like transmembrane domain	NA|239aa|down_4|NZ_CP010951.1_899041_899758_-	COG0410, LivF, ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]	NA|272aa|down_5|NZ_CP010951.1_899816_900632_-	COG0411, LivG, ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]	NA|369aa|down_6|NZ_CP010951.1_900643_901750_-	PRK11301, livM, leucine/isoleucine/valine transporter permease subunit; Provisional	NA|310aa|down_7|NZ_CP010951.1_901760_902690_-	COG0559, LivH, Branched-chain amino acid ABC-type transport system, permease components [Amino acid transport and metabolism]	NA|442aa|down_8|NZ_CP010951.1_902871_904197_-	PRK13342, PRK13342, recombination factor protein RarA; Reviewed	NA|125aa|down_9|NZ_CP010951.1_904238_904613_+	NA
GCF_001580455.1_ASM158045v1	NZ_CP010951	Ramlibacter tataouinensis strain 5-10 chromosome, complete genome	2	1780876-1780971	2	CRISPRCasFinder	no		csa3,Cas9_archaeal,cas3,DEDDh,DinG	Orphan	CGGGCTGCGGTGCTACGAGCCTTCGGAGCGGCCG	34	1	3	1780910-1780937|1780910-1780937|1780910-1780937	NZ_CP010951.1_1038521-1038548|NZ_CP010951.1_1332949-1332976|NZ_CP010951.1_1333011-1333038	NA	1	1	Orphan	csa3,Cas9_archaeal,cas3,DEDDh,DinG	NA|83aa|up_6|NZ_CP010951.1_1774780_1775029_-,NA|142aa|up_1|NZ_CP010951.1_1779999_1780425_-,NA|135aa|down_5|NZ_CP010951.1_1786366_1786771_+,NA|220aa|down_8|NZ_CP010951.1_1788312_1788972_+	NA|191aa|up_9|NZ_CP010951.1_1771094_1771667_-	PRK11789, PRK11789, 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD	NA|470aa|up_8|NZ_CP010951.1_1771659_1773069_-	COG2204, AtoC, Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]	NA|605aa|up_7|NZ_CP010951.1_1773068_1774883_-	PRK11360, PRK11360, two-component system sensor histidine kinase AtoS	NA|83aa|up_6|NZ_CP010951.1_1774780_1775029_-	NA	NA|266aa|up_5|NZ_CP010951.1_1775028_1775826_-	COG4137, COG4137, ABC-type uncharacterized transport system, permease component [General function prediction only]	NA|461aa|up_4|NZ_CP010951.1_1775909_1777292_+	PRK10867, PRK10867, signal recognition particle protein; Provisional	NA|426aa|up_3|NZ_CP010951.1_1777359_1778637_+	TIGR02037, Probable_periplasmic_serine_protease_do/HhoA-like, periplasmic serine protease, Do/DeqQ family	NA|447aa|up_2|NZ_CP010951.1_1778647_1779988_-	PRK14325, PRK14325, (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional	NA|142aa|up_1|NZ_CP010951.1_1779999_1780425_-	NA	NA|88aa|up_0|NZ_CP010951.1_1780570_1780834_+	COG2261, COG2261, Predicted membrane protein [Function unknown]	NA|335aa|down_0|NZ_CP010951.1_1780977_1781982_-	pfam06089, Asparaginase_II, L-asparaginase II	NA|164aa|down_1|NZ_CP010951.1_1781990_1782482_-	pfam01927, Mut7-C, Mut7-C RNAse domain	NA|241aa|down_2|NZ_CP010951.1_1782499_1783222_-	pfam02586, SRAP, SOS response associated peptidase (SRAP)	NA|322aa|down_3|NZ_CP010951.1_1783245_1784211_-	COG0679, COG0679, Predicted permeases [General function prediction only]	NA|691aa|down_4|NZ_CP010951.1_1784297_1786370_+	TIGR01074, ATP-dependent_DNA_helicase_Rep, ATP-dependent DNA helicase Rep	NA|135aa|down_5|NZ_CP010951.1_1786366_1786771_+	NA	NA|264aa|down_6|NZ_CP010951.1_1786816_1787608_-	cd10281, Nape_like_AP-endo, Neisseria meningitides Nape-like subfamily of the ExoIII family purinic/apyrimidinic (AP) endonucleases	NA|228aa|down_7|NZ_CP010951.1_1787618_1788302_+	PRK00455, pyrE, orotate phosphoribosyltransferase; Validated	NA|220aa|down_8|NZ_CP010951.1_1788312_1788972_+	NA	NA|388aa|down_9|NZ_CP010951.1_1789100_1790264_+	pfam12625, Arabinose_bd, Arabinose-binding domain of AraC transcription regulator, N-term
GCF_001580455.1_ASM158045v1	NZ_CP010951	Ramlibacter tataouinensis strain 5-10 chromosome, complete genome	3	3085653-3085751	3	CRISPRCasFinder	no		csa3,Cas9_archaeal,cas3,DEDDh,DinG	Orphan	CGCCCTGCGGGCTGCGGTGCTATGAGCCTTCGGAGCG	37	1	6	3085690-3085714|3085690-3085714|3085690-3085714|3085690-3085714|3085690-3085714|3085690-3085714	NZ_CP010951.1_1038517-1038541|NZ_CP010951.1_1332945-1332969|NZ_CP010951.1_1333007-1333031|NZ_CP010951.1_115221-115245|NZ_CP010951.1_744703-744679|NZ_CP010951.1_1959355-1959379	NA	1	1	Orphan	csa3,Cas9_archaeal,cas3,DEDDh,DinG	NA,NA	NA|355aa|up_9|NZ_CP010951.1_3075971_3077036_-	PRK00742, PRK00742, chemotaxis-specific protein-glutamate methyltransferase CheB	NA|201aa|up_8|NZ_CP010951.1_3077032_3077635_-	PRK13487, PRK13487, chemoreceptor glutamine deamidase CheD; Provisional	NA|276aa|up_7|NZ_CP010951.1_3077647_3078475_-	PRK10611, PRK10611, protein-glutamate O-methyltransferase CheR	NA|413aa|up_6|NZ_CP010951.1_3078486_3079725_-	PRK15041, PRK15041, methyl-accepting chemotaxis protein	NA|446aa|up_5|NZ_CP010951.1_3079752_3081090_-	PRK15041, PRK15041, methyl-accepting chemotaxis protein	NA|165aa|up_4|NZ_CP010951.1_3081101_3081596_-	PRK10612, PRK10612, chemotaxis protein CheW	NA|641aa|up_3|NZ_CP010951.1_3081620_3083543_-	COG0643, CheA, Chemotaxis protein histidine kinase and related kinases [Cell motility and secretion / Signal transduction mechanisms]	NA|121aa|up_2|NZ_CP010951.1_3083623_3083986_-	cd17562, REC_CheY4-like, phosphoacceptor receiver (REC) domain of chemotaxis response regulator CheY4 and similar CheY family proteins	NA|297aa|up_1|NZ_CP010951.1_3084001_3084892_-	cd17546, REC_hyHK_CKI1_RcsC-like, phosphoacceptor receiver (REC) domain of hybrid sensor histidine kinases/response regulators similar to Arabidopsis thaliana CKI1 and Escherichia coli RcsC	NA|251aa|up_0|NZ_CP010951.1_3084888_3085641_-	cd14014, STKc_PknB_like, Catalytic domain of bacterial Serine/Threonine kinases, PknB and similar proteins	NA|533aa|down_0|NZ_CP010951.1_3085761_3087360_-	cd14014, STKc_PknB_like, Catalytic domain of bacterial Serine/Threonine kinases, PknB and similar proteins	NA|505aa|down_1|NZ_CP010951.1_3087642_3089157_-	pfam04295, GD_AH_C, D-galactarate dehydratase / Altronate hydrolase, C-terminus	NA|465aa|down_2|NZ_CP010951.1_3089173_3090568_-	COG1593, DctQ, TRAP-type C4-dicarboxylate transport system, large permease component [Carbohydrate transport and metabolism]	NA|192aa|down_3|NZ_CP010951.1_3090593_3091169_-	COG3090, DctM, TRAP-type C4-dicarboxylate transport system, small permease component [Carbohydrate transport and metabolism]	NA|328aa|down_4|NZ_CP010951.1_3091173_3092157_-	cd13672, PBP2_TRAP_Siap, Substrate-binding domain of a sialic acid binding Tripartite ATP-independent  Periplasmic transport system (SiaP); the type 2 periplasmic-binding protein fold	NA|237aa|down_5|NZ_CP010951.1_3092187_3092898_-	COG2186, FadR, Transcriptional regulators [Transcription]	NA|374aa|down_6|NZ_CP010951.1_3092984_3094106_+	cd03316, MR_like, Mandelate racemase (MR)-like subfamily of the enolase superfamily	NA|249aa|down_7|NZ_CP010951.1_3094108_3094855_+	cd05368, DHRS6_like_SDR_c, human DHRS6-like, classical (c) SDRs	NA|249aa|down_8|NZ_CP010951.1_3094851_3095598_+	PRK05653, fabG, 3-oxoacyl-ACP reductase FabG	NA|283aa|down_9|NZ_CP010951.1_3095619_3096468_+	COG0179, MhpD, 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway) [Secondary metabolites biosynthesis, transport, and catabolism]
GCF_001580455.1_ASM158045v1	NZ_CP010951	Ramlibacter tataouinensis strain 5-10 chromosome, complete genome	4	3131341-3131466	4	CRISPRCasFinder	no		csa3,Cas9_archaeal,cas3,DEDDh,DinG	Orphan	GGGGGGCAGCGAGTACACAAAGTGACGAGCGTGGGGGTGCAT	42	0	0	NA	NA	NA	1	1	Orphan	csa3,Cas9_archaeal,cas3,DEDDh,DinG	NA,NA|127aa|down_4|NZ_CP010951.1_3135692_3136073_+	NA|381aa|up_9|NZ_CP010951.1_3119409_3120552_+	pfam11737, DUF3300, Protein of unknown function (DUF3300)	NA|323aa|up_8|NZ_CP010951.1_3120554_3121523_+	pfam11453, DUF2950, Protein of unknown function (DUF2950)	NA|481aa|up_7|NZ_CP010951.1_3121656_3123099_+	pfam11737, DUF3300, Protein of unknown function (DUF3300)	NA|314aa|up_6|NZ_CP010951.1_3123151_3124093_+	pfam11453, DUF2950, Protein of unknown function (DUF2950)	NA|388aa|up_5|NZ_CP010951.1_3124040_3125204_-	COG0628, yhhT, Predicted permease, member of the PurR regulon [General function prediction only]	NA|391aa|up_4|NZ_CP010951.1_3125328_3126501_-	cd06343, PBP1_ABC_ligand_binding-like, type 1 periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems predicted to be involved in uptake of amino acids, peptides, or inorganic ions	NA|619aa|up_3|NZ_CP010951.1_3126631_3128488_-	COG1022, FAA1, Long-chain acyl-CoA synthetases (AMP-forming) [Lipid metabolism]	NA|266aa|up_2|NZ_CP010951.1_3128597_3129395_-	COG0410, LivF, ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]	NA|268aa|up_1|NZ_CP010951.1_3129414_3130218_-	cd03219, ABC_Mj1267_LivG_branched, ATP-binding cassette component of branched chain amino acids transport system	NA|359aa|up_0|NZ_CP010951.1_3130220_3131297_-	cd06581, TM_PBP1_LivM_like, Transmembrane subunit (TM) of Escherichia coli LivM and related proteins	NA|292aa|down_0|NZ_CP010951.1_3131480_3132356_-	cd06582, TM_PBP1_LivH_like, Transmembrane subunit (TM) of Escherichia coli LivH and related proteins	NA|265aa|down_1|NZ_CP010951.1_3132481_3133276_+	PRK08259, PRK08259, crotonase/enoyl-CoA hydratase family protein	NA|138aa|down_2|NZ_CP010951.1_3133346_3133760_-	COG1607, COG1607, Acyl-CoA hydrolase [Lipid metabolism]	NA|626aa|down_3|NZ_CP010951.1_3133795_3135673_+	COG5265, ATM1, ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones]	NA|127aa|down_4|NZ_CP010951.1_3135692_3136073_+	NA	NA|171aa|down_5|NZ_CP010951.1_3136047_3136560_+	COG5649, COG5649, Uncharacterized conserved protein [Function unknown]	NA|172aa|down_6|NZ_CP010951.1_3136611_3137127_+	pfam08002, DUF1697, Protein of unknown function (DUF1697)	NA|163aa|down_7|NZ_CP010951.1_3137138_3137627_+	pfam13673, Acetyltransf_10, Acetyltransferase (GNAT) domain	NA|148aa|down_8|NZ_CP010951.1_3137685_3138129_+	cd08895, SRPBCC_CalC_Aha1-like_2, Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins	NA|150aa|down_9|NZ_CP010951.1_3138282_3138732_+	COG5615, COG5615, Predicted integral membrane protein [Function unknown]
GCF_001580455.1_ASM158045v1	NZ_CP010951	Ramlibacter tataouinensis strain 5-10 chromosome, complete genome	5	4316419-4316517	5	CRISPRCasFinder	no		csa3,Cas9_archaeal,cas3,DEDDh,DinG	Orphan	GGGGCGCAAATAAAAAAGCCCCGATGCAAGCATCG	35	0	0	NA	NA	NA	1	1	Orphan	csa3,Cas9_archaeal,cas3,DEDDh,DinG	NA|98aa|up_6|NZ_CP010951.1_4306103_4306397_-,NA|210aa|down_9|NZ_CP010951.1_4325436_4326066_+	NA|273aa|up_9|NZ_CP010951.1_4303190_4304009_+	cd03224, ABC_TM1139_LivF_branched, ATP-binding cassette domain of branched-chain amino acid transporter	NA|485aa|up_8|NZ_CP010951.1_4304054_4305509_+	cd07105, ALDH_SaliADH, Salicylaldehyde dehydrogenase, DoxF-like	NA|167aa|up_7|NZ_CP010951.1_4305515_4306016_-	COG4244, COG4244, Predicted membrane protein [Function unknown]	NA|98aa|up_6|NZ_CP010951.1_4306103_4306397_-	NA	NA|794aa|up_5|NZ_CP010951.1_4306540_4308922_-	PRK05658, PRK05658, RNA polymerase sigma factor RpoD; Validated	NA|593aa|up_4|NZ_CP010951.1_4309178_4310957_-	PRK05667, dnaG, DNA primase; Validated	NA|549aa|up_3|NZ_CP010951.1_4311037_4312684_+	PRK08162, PRK08162, acyl-CoA synthetase; Validated	NA|298aa|up_2|NZ_CP010951.1_4312703_4313597_+	pfam03631, Virul_fac_BrkB, Virulence factor BrkB	NA|619aa|up_1|NZ_CP010951.1_4313603_4315460_-	COG0405, Ggt, Gamma-glutamyltransferase [Amino acid transport and metabolism]	NA|253aa|up_0|NZ_CP010951.1_4315517_4316276_-	cd05371, HSD10-like_SDR_c, 17hydroxysteroid dehydrogenase type 10 (HSD10)-like, classical (c) SDRs	NA|181aa|down_0|NZ_CP010951.1_4316674_4317217_-	pfam09361, Phasin_2, Phasin protein	NA|310aa|down_1|NZ_CP010951.1_4317404_4318334_+	cd09993, HDAC_classIV, Histone deacetylase class IV also known as histone deacetylase 11	NA|156aa|down_2|NZ_CP010951.1_4318330_4318798_+	COG0824, FcbC, Predicted thioesterase [General function prediction only]	NA|241aa|down_3|NZ_CP010951.1_4318773_4319496_+	cd02136, PnbA_NfnB-like, nitroreductase similar to Mycobacterium smegmatis NfnB	NA|480aa|down_4|NZ_CP010951.1_4319492_4320932_+	pfam16980, CitMHS_2, Putative citrate transport	NA|327aa|down_5|NZ_CP010951.1_4320943_4321924_+	cd05301, GDH, D-glycerate dehydrogenase/hydroxypyruvate reductase (GDH)	NA|445aa|down_6|NZ_CP010951.1_4321965_4323300_+	COG1322, COG1322, Predicted nuclease of restriction endonuclease-like fold, RmuC family [General function prediction only]	NA|384aa|down_7|NZ_CP010951.1_4323296_4324448_+	cd17325, MFS_MdtG_SLC18_like, bacterial MdtG-like and eukaryotic solute carrier 18 (SLC18) family of the Major Facilitator Superfamily of transporters	NA|288aa|down_8|NZ_CP010951.1_4324457_4325321_-	COG1611, COG1611, Predicted Rossmann fold nucleotide-binding protein [General function prediction only]	NA|210aa|down_9|NZ_CP010951.1_4325436_4326066_+	NA
