assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_001579765.1_ASM157976v1	NZ_CP010993	Clostridium perfringens strain JP55 chromosome, complete genome	1	333192-333280	1	CRISPRCasFinder	no		csx1,cas14j,DEDDh,cas2,csa3,cas3,c2c9_V-U4,DinG	Orphan	AGTTTTATATAAATCAATATAAA	23	0	0	NA	NA	NA	1	1	Orphan	csx1,cas14j,DEDDh,cas2,csa3,cas3,c2c9_V-U4,DinG	NA|71aa|up_2|NZ_CP010993.1_330949_331162_+,NA|99aa|up_0|NZ_CP010993.1_332813_333110_-,NA	NA|83aa|up_9|NZ_CP010993.1_324194_324443_+	pfam07875, Coat_F, Coat F domain	NA|244aa|up_8|NZ_CP010993.1_324978_325710_-	PRK00481, PRK00481, NAD-dependent deacetylase; Provisional	NA|381aa|up_7|NZ_CP010993.1_325910_327053_+	COG4748, COG4748, Uncharacterized conserved protein [Function unknown]	NA|205aa|up_6|NZ_CP010993.1_327313_327928_+	cd03357, LbH_MAT_GAT, Maltose O-acetyltransferase (MAT) and Galactoside O-acetyltransferase (GAT): MAT and GAT catalyze the CoA-dependent acetylation of the 6-hydroxyl group of their respective sugar substrates	NA|169aa|up_5|NZ_CP010993.1_328148_328655_+	COG1329, COG1329, Transcriptional regulators, similar to M	NA|379aa|up_4|NZ_CP010993.1_328831_329968_+	pfam00924, MS_channel, Mechanosensitive ion channel	NA|208aa|up_3|NZ_CP010993.1_329964_330588_+	COG3142, CutC, Uncharacterized protein involved in copper resistance [Inorganic ion transport and metabolism]	NA|71aa|up_2|NZ_CP010993.1_330949_331162_+	NA	NA|437aa|up_1|NZ_CP010993.1_331282_332593_-	pfam07613, DUF1576, Protein of unknown function (DUF1576)	NA|99aa|up_0|NZ_CP010993.1_332813_333110_-	NA	NA|226aa|down_0|NZ_CP010993.1_333317_333995_-	PRK05254, PRK05254, uracil-DNA glycosylase; Provisional	NA|156aa|down_1|NZ_CP010993.1_340849_341317_-	COG1225, Bcp, Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]	NA|249aa|down_2|NZ_CP010993.1_341984_342731_+	PRK00059, prsA, peptidylprolyl isomerase; Provisional	NA|271aa|down_3|NZ_CP010993.1_343194_344007_+	COG1682, TagG, ABC-type polysaccharide/polyol phosphate export systems, permease component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]	NA|391aa|down_4|NZ_CP010993.1_344024_345197_+	cd03220, ABC_KpsT_Wzt, ATP-binding cassette component of polysaccharide transport system	NA|428aa|down_5|NZ_CP010993.1_345210_346494_+	cd04950, GT4_TuaH-like, teichuronic acid biosynthesis glycosyltransferase TuaH and similar proteins	NA|412aa|down_6|NZ_CP010993.1_346512_347748_+	cd04950, GT4_TuaH-like, teichuronic acid biosynthesis glycosyltransferase TuaH and similar proteins	NA|394aa|down_7|NZ_CP010993.1_347761_348943_+	cd03220, ABC_KpsT_Wzt, ATP-binding cassette component of polysaccharide transport system	NA|478aa|down_8|NZ_CP010993.1_349057_350491_+	cd04950, GT4_TuaH-like, teichuronic acid biosynthesis glycosyltransferase TuaH and similar proteins	NA|218aa|down_9|NZ_CP010993.1_350627_351281_-	COG0637, COG0637, Predicted phosphatase/phosphohexomutase [General function prediction only]
GCF_001579765.1_ASM157976v1	NZ_CP010993	Clostridium perfringens strain JP55 chromosome, complete genome	2	1285211-1285296	2	CRISPRCasFinder	no	c2c9_V-U4	csx1,cas14j,DEDDh,cas2,csa3,cas3,c2c9_V-U4,DinG	Type V-U4	TTTTAACTTTTGTATGCAGAAGAGG	25	0	0	NA	NA	NA	1	1	TypeV-U4	csx1,cas14j,DEDDh,cas2,csa3,cas3,c2c9_V-U4,DinG	NA|270aa|up_8|NZ_CP010993.1_1276101_1276911_+,NA|124aa|up_5|NZ_CP010993.1_1279376_1279748_-,NA|362aa|down_2|NZ_CP010993.1_1289198_1290284_+,NA|276aa|down_7|NZ_CP010993.1_1296222_1297050_+	NA|180aa|up_9|NZ_CP010993.1_1275526_1276066_+	pfam14317, YcxB, YcxB-like protein	NA|270aa|up_8|NZ_CP010993.1_1276101_1276911_+	NA	NA|318aa|up_7|NZ_CP010993.1_1277321_1278275_-	PRK00005, fmt, methionyl-tRNA formyltransferase; Reviewed	NA|265aa|up_6|NZ_CP010993.1_1278487_1279282_-	cd06259, YdcF-like, YdcF-like	NA|124aa|up_5|NZ_CP010993.1_1279376_1279748_-	NA	NA|105aa|up_4|NZ_CP010993.1_1280106_1280421_+	TIGR03433, padR_acidobact, transcriptional regulator, Acidobacterial, PadR-family	NA|219aa|up_3|NZ_CP010993.1_1280433_1281090_+	COG4008, COG4008, Predicted metal-binding transcription factor [Transcription]	NA|111aa|up_2|NZ_CP010993.1_1281441_1281774_-	pfam12650, DUF3784, Domain of unknown function (DUF3784)	NA|708aa|up_1|NZ_CP010993.1_1282290_1284414_-	COG0370, FeoB, Fe2+ transport system protein B [Inorganic ion transport and metabolism]	NA|73aa|up_0|NZ_CP010993.1_1284431_1284650_-	pfam04023, FeoA, FeoA domain	NA|179aa|down_0|NZ_CP010993.1_1285535_1286072_+	pfam18406, DUF1281_C, Ferredoxin-like domain in Api92-like protein	NA|967aa|down_1|NZ_CP010993.1_1286258_1289159_+	COG1061, SSL2, DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair]	NA|362aa|down_2|NZ_CP010993.1_1289198_1290284_+	NA	NA|682aa|down_3|NZ_CP010993.1_1290679_1292725_+	COG3593, COG3593, Predicted ATP-dependent endonuclease of the OLD family [DNA replication, recombination, and repair]	NA|633aa|down_4|NZ_CP010993.1_1292744_1294643_+	COG0210, UvrD, Superfamily I DNA and RNA helicases [DNA replication, recombination, and repair]	NA|142aa|down_5|NZ_CP010993.1_1294721_1295147_-	COG2856, COG2856, Predicted Zn peptidase [Amino acid transport and metabolism]	NA|181aa|down_6|NZ_CP010993.1_1295281_1295824_-	smart00530, HTH_XRE, Helix-turn-helix XRE-family like proteins	NA|276aa|down_7|NZ_CP010993.1_1296222_1297050_+	NA	NA|77aa|down_8|NZ_CP010993.1_1297227_1297458_+	pfam14201, DUF4318, Domain of unknown function (DUF4318)	NA|77aa|down_9|NZ_CP010993.1_1297818_1298049_+	pfam14201, DUF4318, Domain of unknown function (DUF4318)
GCF_001579765.1_ASM157976v1	NZ_CP010993	Clostridium perfringens strain JP55 chromosome, complete genome	3	2403007-2403119	3	CRISPRCasFinder	no		csx1,cas14j,DEDDh,cas2,csa3,cas3,c2c9_V-U4,DinG	Orphan	TTCTATTTAAATCTATTACTTTACATAA	28	0	0	NA	NA	NA	1	1	Orphan	csx1,cas14j,DEDDh,cas2,csa3,cas3,c2c9_V-U4,DinG	NA,NA|121aa|down_0|NZ_CP010993.1_2403188_2403551_-,NA|116aa|down_2|NZ_CP010993.1_2404392_2404740_-,NA|147aa|down_3|NZ_CP010993.1_2404736_2405177_-,NA|204aa|down_4|NZ_CP010993.1_2405136_2405748_-,NA|137aa|down_5|NZ_CP010993.1_2405722_2406133_-,NA|99aa|down_6|NZ_CP010993.1_2406119_2406416_-	NA|136aa|up_9|NZ_CP010993.1_2396806_2397214_-	PRK00202, nusB, transcription antitermination factor NusB	NA|130aa|up_8|NZ_CP010993.1_2397332_2397722_-	pfam03780, Asp23, Asp23 family, cell envelope-related function	NA|166aa|up_7|NZ_CP010993.1_2397806_2398304_-	pfam12685, SpoIIIAH, SpoIIIAH-like protein	NA|202aa|up_6|NZ_CP010993.1_2398329_2398935_-	TIGR02830, Stage_III_sporulation_protein_AG, stage III sporulation protein AG	NA|186aa|up_5|NZ_CP010993.1_2398949_2399507_-	TIGR02896, Stage_III_sporulation_protein_AF, stage III sporulation protein AF	NA|391aa|up_4|NZ_CP010993.1_2399514_2400687_-	TIGR02829, Stage_III_sporulation_protein_AE, stage III sporulation protein AE	NA|129aa|up_3|NZ_CP010993.1_2400697_2401084_-	TIGR02849, Stage_III_sporulation_protein_AD, stage III sporulation protein AD	NA|66aa|up_2|NZ_CP010993.1_2401171_2401369_-	TIGR02848, Stage_III_sporulation_protein_AC, stage III sporulation protein AC	NA|172aa|up_1|NZ_CP010993.1_2401444_2401960_-	TIGR02833, Stage_III_sporulation_protein_AB, stage III sporulation protein AB	NA|295aa|up_0|NZ_CP010993.1_2402106_2402991_-	TIGR02858, Stage_III_sporulation_protein_AA, stage III sporulation protein AA	NA|121aa|down_0|NZ_CP010993.1_2403188_2403551_-	NA	NA|186aa|down_1|NZ_CP010993.1_2403664_2404222_-	PRK00529, PRK00529, elongation factor P; Validated	NA|116aa|down_2|NZ_CP010993.1_2404392_2404740_-	NA	NA|147aa|down_3|NZ_CP010993.1_2404736_2405177_-	NA	NA|204aa|down_4|NZ_CP010993.1_2405136_2405748_-	NA	NA|137aa|down_5|NZ_CP010993.1_2405722_2406133_-	NA	NA|99aa|down_6|NZ_CP010993.1_2406119_2406416_-	NA	NA|171aa|down_7|NZ_CP010993.1_2406550_2407063_-	COG2165, PulG, Type II secretory pathway, pseudopilin PulG [Cell motility and secretion / Intracellular trafficking and secretion]	NA|143aa|down_8|NZ_CP010993.1_2407082_2407511_-	PRK10557, PRK10557, prepilin peptidase-dependent protein	NA|340aa|down_9|NZ_CP010993.1_2407503_2408523_-	COG1459, PulF, Type II secretory pathway, component PulF [Cell motility and secretion / Intracellular trafficking and secretion]
GCF_001579765.1_ASM157976v1	NZ_CP013044	Clostridium perfringens strain JP55 plasmid pJFP55J, complete sequence	1	12123-12216	1	CRISPRCasFinder	no			Orphan	CTGTCATTTTGACTGTTCTCAGAAA	25	0	0	NA	NA	NA	1	1	Orphan	csx1,cas14j,DEDDh,cas2,csa3,cas3,c2c9_V-U4,DinG	NA|73aa|up_9|NZ_CP013044.1_436_655_-,NA|137aa|down_7|NZ_CP013044.1_25864_26275_+	NA|73aa|up_9|NZ_CP013044.1_436_655_-	NA	NA|440aa|up_8|NZ_CP013044.1_936_2256_-	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms]	NA|218aa|up_7|NZ_CP013044.1_2252_2906_-	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|459aa|up_6|NZ_CP013044.1_3045_4422_-	COG0577, SalY, ABC-type antimicrobial peptide transport system, permease component [Defense mechanisms]	NA|219aa|up_5|NZ_CP013044.1_4421_5078_-	COG1136, SalX, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]	NA|426aa|up_4|NZ_CP013044.1_5087_6365_-	COG0577, SalY, ABC-type antimicrobial peptide transport system, permease component [Defense mechanisms]	NA|121aa|up_3|NZ_CP013044.1_7959_8322_-	pfam02452, PemK_toxin, PemK-like, MazF-like toxin of type II toxin-antitoxin system	NA|348aa|up_2|NZ_CP013044.1_8432_9476_-	cd05379, CAP_bacterial, Bacterial CAP (cysteine-rich secretory proteins, antigen 5, and pathogenesis-related 1 proteins) domain proteins	NA|162aa|up_1|NZ_CP013044.1_9521_10007_-	smart00421, HTH_LUXR, helix_turn_helix, Lux Regulon	NA|369aa|up_0|NZ_CP013044.1_10320_11427_+	PRK00215, PRK00215, transcriptional repressor LexA	NA|251aa|down_0|NZ_CP013044.1_13386_14139_+	pfam13614, AAA_31, AAA domain	NA|411aa|down_1|NZ_CP013044.1_14197_15430_+	cd16406, ParB_N_like, ParB N-terminal, parA-binding, -like domain of bacterial and plasmid parABS partitioning systems	NA|325aa|down_2|NZ_CP013044.1_16586_17561_+	cd00542, Ntn_PVA, Penicillin V acylase (PVA), also known as conjugated bile salt acid hydrolase (CBAH), catalyzes the hydrolysis of penicillin V to yield 6-amino penicillanic acid (6-APA), an important key intermediate of semisynthetic penicillins	NA|486aa|down_3|NZ_CP013044.1_18760_20218_-	pfam05043, Mga, Mga helix-turn-helix domain	NA|758aa|down_4|NZ_CP013044.1_20858_23132_+	COG4932, COG4932, Predicted outer membrane protein [Cell envelope biogenesis, outer membrane]	NA|520aa|down_5|NZ_CP013044.1_23131_24691_+	pfam16569, GramPos_pilinBB, Gram-positive pilin backbone subunit 2, Cna-B-like domain	NA|266aa|down_6|NZ_CP013044.1_24832_25630_+	cd05827, Sortase_C, Sortase domain found in class C sortases	NA|137aa|down_7|NZ_CP013044.1_25864_26275_+	NA	NA|419aa|down_8|NZ_CP013044.1_26769_28026_+	TIGR04463, Radical_SAM_domain_protein, radical SAM/SPASM domain protein maturase	NA|190aa|down_9|NZ_CP013044.1_28476_29046_+	cd03768, SR_ResInv, Serine Recombinase (SR) family, Resolvase and Invertase subfamily, catalytic domain; members contain a C-terminal DNA binding domain
