The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP010888	Clostridioides difficile strain 08ACD0030 chromosome, complete genome	4167076	153588	175605	4167076	transposase	Streptococcus_phage(78.57%)	23	NA	NA
WP_009898603.1|153588_156354_-	magnesium-translocating P-type ATPase	NA	M1HJQ2	Paramecium_bursaria_Chlorella_virus	25.6	5.8e-48
WP_009898605.1|156519_156831_-	DUF3784 domain-containing protein	NA	NA	NA	NA	NA
WP_009898609.1|157077_157755_-	MgtC/SapB family protein	NA	G3MA03	Bacillus_virus	36.0	3.3e-13
WP_009898610.1|157892_158396_-	winged helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_016729346.1|158411_161075_-	magnesium-translocating P-type ATPase	NA	M1HBF8	Paramecium_bursaria_Chlorella_virus	24.8	1.8e-38
WP_022617708.1|161167_161377_-|transposase	transposase	transposase	NA	NA	NA	NA
WP_021395533.1|161326_161662_+	hypothetical protein	NA	NA	NA	NA	NA
WP_018112598.1|161860_162763_-	conjugal transfer protein	NA	A0A1S5SF22	Streptococcus_phage	52.3	5.8e-82
WP_021381751.1|162779_163787_-	bifunctional lysozyme/C40 family peptidase	NA	A0A1S5SEZ8	Streptococcus_phage	69.0	5.2e-132
WP_021372810.1|163783_165988_-	MFS transporter	NA	A0A1S5SF30	Streptococcus_phage	51.4	1.1e-182
WP_021403921.1|165987_168438_-	ATP-binding protein	NA	A0A1S5SF64	Streptococcus_phage	76.1	0.0e+00
WP_008393094.1|168415_168814_-	conjugal transfer protein	NA	A0A1S5SEX7	Streptococcus_phage	73.0	3.2e-48
WP_009898623.1|168931_169435_-	antirestriction protein ArdA	NA	A0A1S5SF25	Streptococcus_phage	60.2	4.4e-55
WP_021361564.1|169452_169956_-	antirestriction protein ArdA	NA	NA	NA	NA	NA
WP_022620525.1|169874_170171_-	hypothetical protein	NA	NA	NA	NA	NA
WP_021401231.1|170269_171064_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002323342.1|171102_171324_-	hypothetical protein	NA	A0A1S5SEY0	Streptococcus_phage	87.7	9.0e-29
WP_021381637.1|171324_171459_-	DUF3789 domain-containing protein	NA	NA	NA	NA	NA
WP_021361566.1|171471_172668_-	XRE family transcriptional regulator	NA	A0A1S5SEX3	Streptococcus_phage	61.8	1.4e-147
WP_021403925.1|172852_174247_-	cell division protein FtsK	NA	A0A1S5SFB5	Streptococcus_phage	65.1	5.0e-173
WP_021361568.1|174340_174778_-	hypothetical protein	NA	NA	NA	NA	NA
WP_021361569.1|174879_175263_-	YdcP family protein	NA	A0A1S5SF96	Streptococcus_phage	57.0	6.8e-32
WP_021373079.1|175278_175605_-	YdcP family protein	NA	A0A1S5SF38	Streptococcus_phage	52.4	1.8e-25
>prophage 2
NZ_CP010888	Clostridioides difficile strain 08ACD0030 chromosome, complete genome	4167076	782739	800858	4167076	transposase	Synechococcus_phage(20.0%)	16	NA	NA
WP_003435056.1|782739_783138_+|transposase	IS200/IS605 family transposase	transposase	A0A0A8WIU6	Clostridium_phage	96.2	2.5e-69
WP_003435058.1|783134_784298_+|transposase	IS200/IS605 family element transposase accessory protein TnpB	transposase	A0A0A8WI33	Clostridium_phage	99.0	1.7e-219
WP_009895309.1|784681_785194_-	nitroreductase family protein	NA	A0A1V0E011	Clostridioides_phage	87.6	3.5e-84
WP_003425290.1|785643_786120_+	5-(carboxyamino)imidazole ribonucleotide mutase	NA	A0A2P0VNU7	Tetraselmis_virus	45.8	6.9e-26
WP_003420966.1|786125_786824_+	phosphoribosylaminoimidazolesuccinocarboxamide synthase	NA	A0A0E3F9V5	Synechococcus_phage	43.9	1.5e-45
WP_003425288.1|786835_788203_+	amidophosphoribosyltransferase	NA	A0A0M3SGR2	Mollivirus	31.0	2.6e-49
WP_003425286.1|788196_789273_+	phosphoribosylformylglycinamidine cyclo-ligase	NA	R9TMC7	Synechococcus_phage	42.2	1.7e-64
WP_003436064.1|789266_789860_+	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	40.4	4.3e-25
WP_021362141.1|789852_791385_+	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase	NA	E3SNU8	Prochlorococcus_phage	49.7	2.3e-38
WP_021367500.1|791395_792646_+	phosphoribosylamine--glycine ligase	NA	NA	NA	NA	NA
WP_021364154.1|792670_796477_+	phosphoribosylformylglycinamidine synthase	NA	A6N228	Microbacterium_phage	24.5	1.0e-31
WP_009895318.1|796682_797555_+	dTDP-4-dehydrorhamnose reductase	NA	H9NCE8	Sphingomonas_phage	30.0	2.3e-14
WP_003436059.1|797663_798533_+	glucose-1-phosphate thymidylyltransferase RfbA	NA	I7I009	Enterobacteria_phage	61.1	8.1e-97
WP_003436058.1|798581_799139_+	dTDP-4-dehydrorhamnose 3,5-epimerase	NA	I7HJC4	Enterobacteria_phage	53.6	1.3e-47
WP_021358779.1|799176_800160_+	dTDP-glucose 4,6-dehydratase	NA	A0A291LAD7	Escherichia_phage	47.0	1.1e-78
WP_009895321.1|800189_800858_+	lytic transglycosylase domain-containing protein	NA	A0A0H3V0Q1	Geobacillus_virus	46.9	4.1e-24
>prophage 3
NZ_CP010888	Clostridioides difficile strain 08ACD0030 chromosome, complete genome	4167076	1630076	1687301	4167076	capsid,holin,plate,integrase,terminase,tail,portal	Clostridium_phage(94.32%)	90	1625532:1625549	1631367:1631384
1625532:1625549	attL	ATTTAGATACATATTTAA	NA	NA	NA	NA
WP_021361295.1|1630076_1631243_-|integrase	site-specific integrase	integrase	A0A0A8WIF9	Clostridium_phage	100.0	2.8e-222
WP_021361292.1|1631380_1631587_-	hypothetical protein	NA	A0A0A8WJ70	Clostridium_phage	100.0	1.5e-30
1631367:1631384	attR	ATTTAGATACATATTTAA	NA	NA	NA	NA
WP_021361293.1|1631645_1631867_-	helix-turn-helix transcriptional regulator	NA	A0A0A8WFX6	Clostridium_phage	97.3	5.6e-31
WP_021362425.1|1632150_1632288_+	hypothetical protein	NA	A0A0A8WJU2	Clostridium_phage	100.0	3.5e-15
WP_015984871.1|1632324_1632720_-	helix-turn-helix transcriptional regulator	NA	A0A0A8WFG2	Clostridium_phage	100.0	1.7e-65
WP_021371966.1|1632898_1633162_+	transcriptional regulator	NA	A0A0A8WIG0	Clostridium_phage	100.0	9.4e-41
WP_021371957.1|1633130_1633919_+	phage antirepressor KilAC domain-containing protein	NA	A0A0A8WJ71	Clostridium_phage	100.0	7.2e-137
WP_021371961.1|1633973_1634111_+	ribbon-helix-helix domain-containing protein	NA	A0A0A8WFX8	Clostridium_phage	100.0	1.3e-17
WP_021419500.1|1634096_1634408_-	hypothetical protein	NA	A0A0A8WJU4	Clostridium_phage	100.0	3.8e-49
WP_021364195.1|1634528_1634699_+	hypothetical protein	NA	A0A0A8WFG5	Clostridium_phage	100.0	5.1e-24
WP_021381619.1|1634701_1635340_+	hypothetical protein	NA	A0A0A8WJ11	Clostridium_phage	99.5	2.1e-118
WP_021364156.1|1635398_1635569_+	hypothetical protein	NA	A0A0A8WFJ6	Clostridium_phage	100.0	1.7e-27
WP_021364181.1|1635571_1635805_-	hypothetical protein	NA	A0A0A8WJQ0	Clostridium_phage	100.0	7.0e-40
WP_021364149.1|1635873_1636071_+	helix-turn-helix transcriptional regulator	NA	A0A0A8WF20	Clostridium_phage	100.0	7.3e-30
WP_021364191.1|1636109_1636319_+	hypothetical protein	NA	A0A0A8WI91	Clostridium_phage	100.0	6.3e-32
WP_021364179.1|1636476_1636689_+	hypothetical protein	NA	A0A0A8WJ12	Clostridium_phage	100.0	8.9e-34
WP_021362433.1|1636787_1637030_+	hypothetical protein	NA	A0A0A8WFK1	Clostridium_phage	100.0	9.9e-37
WP_021377375.1|1637113_1637623_+	siphovirus Gp157 family protein	NA	A0A0A8WFY3	Clostridium_phage	100.0	3.5e-84
WP_021362890.1|1637632_1638247_+	ERF family protein	NA	A0A0A8WF23	Clostridium_phage	100.0	1.4e-108
WP_021362889.1|1638261_1639122_+	hypothetical protein	NA	A0A0A8WI94	Clostridium_phage	100.0	6.9e-149
WP_021362888.1|1639191_1639443_+	hypothetical protein	NA	A0A0A8WJ15	Clostridium_phage	100.0	5.8e-40
WP_021381618.1|1639459_1639807_+	hypothetical protein	NA	J9QEC6	Clostridium_phage	80.7	8.3e-45
WP_021366325.1|1639775_1639925_+	hypothetical protein	NA	A0A0A8WJQ3	Clostridium_phage	81.6	7.2e-14
WP_021362885.1|1639911_1640361_+	yopX family protein	NA	A0A0A8WF29	Clostridium_phage	100.0	1.1e-84
WP_021360988.1|1640463_1640640_+	hypothetical protein	NA	A0A0A8WJ18	Clostridium_phage	100.0	5.9e-23
WP_021364147.1|1640749_1641823_+	DNA cytosine methyltransferase	NA	A0A0A8WFL3	Clostridium_phage	100.0	7.9e-211
WP_021364161.1|1641901_1642123_+	hypothetical protein	NA	A0A0A8WJQ5	Clostridium_phage	100.0	3.2e-34
WP_021364183.1|1642119_1643124_+	nucleoid-associated protein	NA	A0A0A8WF33	Clostridium_phage	100.0	5.7e-187
WP_015994378.1|1643205_1643535_+	hypothetical protein	NA	A0A0A8WI99	Clostridium_phage	100.0	6.2e-58
WP_015994379.1|1643571_1643943_+	hypothetical protein	NA	A0A0A8WJ20	Clostridium_phage	100.0	8.2e-67
WP_021372966.1|1643945_1644086_+	hypothetical protein	NA	A0A0A8WFL9	Clostridium_phage	100.0	4.8e-20
WP_021364188.1|1644200_1644542_+	RF-1 domain protein	NA	A0A0A8WJQ7	Clostridium_phage	100.0	9.0e-60
WP_015994383.1|1644667_1645075_+	RusA family crossover junction endodeoxyribonuclease	NA	A0A0A8WIA1	Clostridium_phage	100.0	1.5e-69
WP_015994384.1|1645176_1646025_+	ORF6C domain-containing protein	NA	A0A0A8WJ22	Clostridium_phage	100.0	6.3e-155
WP_009894737.1|1646167_1646656_+	hypothetical protein	NA	A0A0A8WIL5	Clostridium_phage	100.0	4.7e-86
WP_009894739.1|1647402_1647576_+	hypothetical protein	NA	A0A0A8WJV0	Clostridium_phage	100.0	5.8e-23
WP_009894741.1|1647575_1648187_+	hypothetical protein	NA	A0A0A8WFI2	Clostridium_phage	100.0	6.9e-111
WP_009894742.1|1648263_1648452_+	hypothetical protein	NA	A0A0A8WIH0	Clostridium_phage	100.0	3.2e-27
WP_009894743.1|1648431_1648749_-	hypothetical protein	NA	A0A0A8WJ81	Clostridium_phage	100.0	5.2e-54
WP_009894744.1|1648872_1649100_+	hypothetical protein	NA	A0A0A8WFZ2	Clostridium_phage	100.0	2.1e-36
WP_009894745.1|1649169_1649862_+	helix-turn-helix domain-containing protein	NA	A0A0A8WFS6	Clostridium_phage	100.0	1.0e-123
WP_021368519.1|1649839_1651093_+|terminase	PBSX family phage terminase large subunit	terminase	A0A0A8WJS9	Clostridium_phage	100.0	5.2e-246
WP_021369362.1|1651098_1652538_+|portal	phage portal protein	portal	A0A0A8WIH2	Clostridium_phage	100.0	1.4e-279
WP_021372967.1|1652527_1653925_+|capsid	minor capsid protein	capsid	A0A0A8WIE7	Clostridium_phage	100.0	9.4e-273
WP_009896618.1|1653939_1654140_+	hypothetical protein	NA	A0A0A8WJ56	Clostridium_phage	100.0	2.3e-31
WP_015984841.1|1654205_1654769_+	phage scaffolding protein	NA	A0A0A8WFU8	Clostridium_phage	100.0	4.9e-87
WP_003429841.1|1654780_1655680_+|capsid	phage capsid protein	capsid	A0A0A8WFI8	Clostridium_phage	100.0	2.8e-169
WP_003429842.1|1655679_1655913_+	hypothetical protein	NA	A0A0A8WFD0	Clostridium_phage	100.0	2.2e-33
WP_015984842.1|1655922_1656324_+	hypothetical protein	NA	A0A0A8WIE8	Clostridium_phage	100.0	2.3e-70
WP_015984843.1|1656317_1656665_+	hypothetical protein	NA	A0A0A8WFZ7	Clostridium_phage	100.0	3.8e-58
WP_009896626.1|1656664_1657090_+	HK97 gp10 family phage protein	NA	A0A0A8WFV8	Clostridium_phage	100.0	1.7e-76
WP_009901457.1|1657082_1657520_+	hypothetical protein	NA	A0A0A8WJT3	Clostridium_phage	100.0	2.9e-79
WP_021368348.1|1657512_1657689_+	hypothetical protein	NA	A0A0A8WFD8	Clostridium_phage	100.0	4.1e-24
WP_015984844.1|1657689_1659000_+|tail	phage tail sheath family protein	tail	A0A0A8WIF0	Clostridium_phage	100.0	6.4e-247
WP_015984845.1|1659021_1659492_+|tail	phage tail tube protein	tail	A0A0A8WJ62	Clostridium_phage	100.0	2.1e-83
WP_015984846.1|1659544_1659802_+	hypothetical protein	NA	A0A0A8WFW0	Clostridium_phage	100.0	2.9e-39
WP_015984847.1|1659806_1660247_+	hypothetical protein	NA	A0A0A8WJT4	Clostridium_phage	100.0	1.2e-77
WP_009901465.1|1660567_1660729_+	hypothetical protein	NA	A0A0A8WFE0	Clostridium_phage	100.0	5.9e-22
WP_003429858.1|1661991_1662180_+	hypothetical protein	NA	X5JAJ2	Clostridium_phage	96.8	2.2e-23
WP_021378510.1|1662298_1663165_+	hypothetical protein	NA	X5JAW1	Clostridium_phage	65.8	1.2e-105
WP_021378513.1|1663217_1663373_+	hypothetical protein	NA	NA	NA	NA	NA
WP_016728883.1|1663791_1664004_-	helix-turn-helix transcriptional regulator	NA	A0A2K5B261	Erysipelothrix_phage	44.1	4.2e-07
WP_095206559.1|1664704_1665058_+	hypothetical protein	NA	X5JAW1	Clostridium_phage	57.0	3.0e-34
WP_021378619.1|1665090_1665243_+	hypothetical protein	NA	NA	NA	NA	NA
WP_009888847.1|1666219_1666747_+	DUF4352 domain-containing protein	NA	A0A0A8WJ63	Clostridium_phage	97.1	8.7e-62
WP_021378618.1|1666885_1667653_+	DUF4428 domain-containing protein	NA	X5JB37	Clostridium_phage	44.8	7.5e-46
WP_021395207.1|1667718_1670091_+	tape measure protein	NA	X5JAB7	Clostridium_phage	43.0	1.3e-157
WP_021391314.1|1670106_1670802_+	LysM peptidoglycan-binding domain-containing protein	NA	X5J9Z8	Clostridium_phage	94.8	8.6e-118
WP_021378424.1|1670794_1672765_+	C40 family peptidase	NA	A0A0A8WIF2	Clostridium_phage	98.2	0.0e+00
WP_009901352.1|1672778_1673039_+	DUF2577 domain-containing protein	NA	A3QSB4	Clostridium_virus	100.0	1.7e-39
WP_009896659.1|1673043_1673463_+	DUF2634 domain-containing protein	NA	A0A0A8WJV8	Clostridium_phage	100.0	7.9e-74
WP_009896661.1|1673463_1674513_+|plate	baseplate J/gp47 family protein	plate	A0A0A8WFK0	Clostridium_phage	100.0	4.5e-195
WP_009896663.1|1674505_1675123_+	YmfQ family protein	NA	A0A0A8WII4	Clostridium_phage	100.0	3.2e-116
WP_021392947.1|1675134_1676160_+|tail	phage tail protein	tail	A3QSB7	Clostridium_virus	98.2	3.4e-163
WP_016056337.1|1676174_1677857_+	hypothetical protein	NA	J9QD15	Clostridium_phage	100.0	4.2e-291
WP_016056338.1|1677873_1678167_+	hypothetical protein	NA	J9QEB9	Clostridium_phage	100.0	3.4e-47
WP_016056339.1|1678166_1678349_+	hypothetical protein	NA	J9QE73	Clostridium_phage	100.0	2.9e-25
WP_021427043.1|1678381_1679617_+	hypothetical protein	NA	A0A0A8WI81	Clostridium_phage	99.5	4.2e-232
WP_021381672.1|1679613_1679913_+	hypothetical protein	NA	B6SBV4	Clostridium_virus	98.0	4.0e-48
WP_021372184.1|1679914_1680052_+	XkdX family protein	NA	A0A090DBT8	Clostridium_phage	100.0	6.8e-19
WP_021372187.1|1680113_1680545_+|holin	phage holin family protein	holin	A0A090D848	Clostridium_phage	100.0	3.4e-72
WP_015984863.1|1680544_1681357_+	N-acetylmuramoyl-L-alanine amidase	NA	A0A090D823	Clostridium_phage	100.0	7.2e-156
WP_015984864.1|1681437_1681800_+	hypothetical protein	NA	A0A090DCS4	Clostridium_phage	100.0	6.0e-62
WP_009898407.1|1681965_1682484_+	hypothetical protein	NA	A0A090EUG6	Clostridium_phage	100.0	3.2e-85
WP_015984865.1|1682547_1684134_-	hypothetical protein	NA	A0A090DBU6	Clostridium_phage	100.0	2.6e-303
WP_009898403.1|1684109_1684631_-	ImmA/IrrE family metallo-endopeptidase	NA	A0A090D850	Clostridium_phage	100.0	1.6e-95
WP_009898401.1|1685332_1685521_-	hypothetical protein	NA	A0A0A8WJ69	Clostridium_phage	100.0	3.1e-30
WP_011861731.1|1685780_1685924_+	hypothetical protein	NA	A0A0A8WJ06	Clostridium_phage	100.0	3.9e-17
WP_021391346.1|1686430_1686808_+	BlaI/MecI/CopY family transcriptional regulator	NA	A0A0A8WJU1	Clostridium_phage	88.0	4.3e-55
WP_015984867.1|1686917_1687301_+	BlaI/MecI/CopY family transcriptional regulator	NA	A3QSD4	Clostridium_virus	100.0	1.7e-62
>prophage 4
NZ_CP010888	Clostridioides difficile strain 08ACD0030 chromosome, complete genome	4167076	1911116	1985351	4167076	transposase,protease,plate,integrase,tRNA,tail,portal	Clostridium_phage(42.86%)	70	1910348:1910366	1986828:1986846
1910348:1910366	attL	TGAAATGGCAAAAAATTTA	NA	NA	NA	NA
WP_032548186.1|1911116_1912235_+|transposase	IS200/IS605 family element transposase accessory protein TnpB	transposase	A0A0H3UZC2	Geobacillus_virus	53.5	1.8e-109
WP_003428232.1|1912670_1913576_+|tRNA	tRNA pseudouridine(55) synthase TruB	tRNA	NA	NA	NA	NA
WP_003438310.1|1913706_1914636_+	bifunctional riboflavin kinase/FAD synthetase	NA	NA	NA	NA	NA
WP_003419491.1|1914739_1914997_+	30S ribosomal protein S15	NA	NA	NA	NA	NA
WP_009889099.1|1915236_1916082_+	DegV family protein	NA	NA	NA	NA	NA
WP_003438316.1|1916206_1918318_+	polyribonucleotide nucleotidyltransferase	NA	NA	NA	NA	NA
WP_003438319.1|1918583_1919327_+	polysaccharide deacetylase family protein	NA	NA	NA	NA	NA
WP_009902409.1|1919484_1920732_+	insulinase family protein	NA	G3MBJ8	Bacillus_virus	35.4	1.0e-52
WP_021364423.1|1920766_1921012_+	YlmC/YmxH family sporulation protein	NA	NA	NA	NA	NA
WP_003438324.1|1921021_1922245_+	aspartate kinase	NA	NA	NA	NA	NA
WP_021364422.1|1922357_1923092_+|protease	ATP-dependent Clp protease proteolytic subunit	protease	NA	NA	NA	NA
WP_003438328.1|1923214_1925626_+	DNA translocase FtsK	NA	A0A218M9A2	Mycobacterium_phage	50.4	3.3e-92
WP_003433322.1|1925628_1926687_+|tRNA	tRNA 2-selenouridine(34) synthase MnmH	tRNA	NA	NA	NA	NA
WP_061364317.1|1926680_1928015_+	30S ribosomal protein S12 methylthiotransferase RimO	NA	NA	NA	NA	NA
WP_009889106.1|1928001_1928544_+	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	NA	NA	NA	NA	NA
WP_021364420.1|1928831_1929878_+	recombinase RecA	NA	A0A0S2MVG1	Bacillus_phage	63.5	1.2e-123
WP_003428216.1|1930053_1931595_+	ribonuclease Y	NA	NA	NA	NA	NA
WP_003438344.1|1932229_1934011_+	UvrD-helicase domain-containing protein	NA	NA	NA	NA	NA
WP_009902411.1|1934092_1934623_-	signal peptidase I	NA	NA	NA	NA	NA
WP_003438350.1|1934662_1935487_-	undecaprenyl-diphosphate phosphatase	NA	NA	NA	NA	NA
WP_009889110.1|1935743_1936652_+|integrase	tyrosine-type recombinase/integrase	integrase	NA	NA	NA	NA
WP_003438353.1|1936795_1938241_+	adenylosuccinate lyase	NA	NA	NA	NA	NA
WP_003419561.1|1938551_1939004_+	MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_021364419.1|1939415_1940993_+	PTS transporter subunit EIIC	NA	NA	NA	NA	NA
WP_009892977.1|1941140_1941893_+	MurR/RpiR family transcriptional regulator	NA	NA	NA	NA	NA
WP_021359123.1|1942031_1943372_+	6-phospho-alpha-glucosidase	NA	NA	NA	NA	NA
WP_003438357.1|1943483_1944680_-	pyridoxal phosphate-dependent aminotransferase	NA	NA	NA	NA	NA
WP_009889113.1|1945064_1946015_+	galactose-1-phosphate uridylyltransferase	NA	NA	NA	NA	NA
WP_003438367.1|1946175_1946928_+	exodeoxyribonuclease III	NA	E3T4M6	Cafeteria_roenbergensis_virus	45.6	1.9e-57
WP_009896237.1|1947019_1947796_-	exonuclease domain-containing protein	NA	NA	NA	NA	NA
WP_003428202.1|1948110_1950009_+	glutamine synthetase	NA	NA	NA	NA	NA
WP_003438374.1|1950136_1951258_-	galactosyldiacylglycerol synthase	NA	NA	NA	NA	NA
WP_009889116.1|1951456_1951789_+	PadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_021367719.1|1951775_1952834_+	DUF1700 domain-containing protein	NA	NA	NA	NA	NA
WP_021364425.1|1952826_1953897_+	DUF4097 family beta strand repeat protein	NA	NA	NA	NA	NA
WP_003428196.1|1953998_1954535_+	lipoprotein	NA	NA	NA	NA	NA
WP_009902422.1|1954650_1955358_+	lantibiotic protection ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	48.5	1.2e-55
WP_009896246.1|1955359_1956076_+	lantibiotic immunity ABC transporter MutE/EpiE family permease subunit	NA	NA	NA	NA	NA
WP_009902423.1|1956077_1956836_+	lantibiotic immunity ABC transporter MutG family permease subunit	NA	NA	NA	NA	NA
WP_021364432.1|1956970_1958359_+	two-component system sensor histidine kinase	NA	NA	NA	NA	NA
WP_021364435.1|1958434_1959256_-	pyridoxamine kinase	NA	NA	NA	NA	NA
WP_003438399.1|1959491_1960661_+	amidase domain-containing protein	NA	NA	NA	NA	NA
WP_003419624.1|1960842_1961043_+	cold-shock protein	NA	A0A1W6JNX5	Morganella_phage	66.2	2.7e-16
WP_009889129.1|1961463_1961892_+	CBS domain-containing protein	NA	NA	NA	NA	NA
WP_009889131.1|1962034_1962790_-	peptidylprolyl isomerase	NA	NA	NA	NA	NA
WP_003428186.1|1963490_1963997_-	hypothetical protein	NA	A0A0A8WEK1	Clostridium_phage	67.1	4.0e-56
WP_003428185.1|1964078_1964399_-	XRE family transcriptional regulator	NA	A0A0A8WE28	Clostridium_phage	54.5	3.7e-23
WP_003419641.1|1964567_1964765_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003428183.1|1964869_1965310_+	hypothetical protein	NA	A0A090EUN5	Clostridium_phage	51.4	6.0e-32
WP_003438413.1|1965558_1966002_+	hypothetical protein	NA	A0A1V0DZX9	Clostridioides_phage	35.4	3.8e-18
WP_003438414.1|1966006_1967071_+|tail	phage tail sheath subtilisin-like domain-containing protein	tail	A0A1V0DZX4	Clostridioides_phage	52.8	7.6e-97
WP_003419646.1|1967084_1967513_+|tail	phage tail tube protein	tail	A0A1V0DZX1	Clostridioides_phage	51.8	2.8e-34
WP_003419647.1|1967626_1968073_+|portal	phage portal protein	portal	A0A090EUD0	Clostridium_phage	36.0	8.2e-13
WP_003419648.1|1968099_1968267_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003438437.1|1968266_1970720_+	hypothetical protein	NA	A0A1V0DZX3	Clostridioides_phage	55.7	6.1e-17
WP_003428168.1|1970719_1971142_+	hypothetical protein	NA	A0A090DBR9	Clostridium_phage	71.1	1.7e-52
WP_003438440.1|1971423_1972953_+	C40 family peptidase	NA	A0A1V0DZX6	Clostridioides_phage	81.1	2.2e-243
WP_003438447.1|1972968_1973295_+	DUF2577 family protein	NA	J9QE86	Clostridium_phage	94.4	1.0e-52
WP_003438449.1|1973294_1973723_+	DUF2634 domain-containing protein	NA	A0A0A8WJ32	Clostridium_phage	82.4	4.4e-64
WP_003438450.1|1973715_1974768_+|plate	baseplate J/gp47 family protein	plate	A0A0A8WFP3	Clostridium_phage	71.0	2.7e-139
WP_003438451.1|1974764_1975463_+	DUF2313 domain-containing protein	NA	A0A090D815	Clostridium_phage	56.9	5.5e-48
WP_003438452.1|1975463_1976447_+|tail	phage tail protein	tail	A0A2H4J039	uncultured_Caudovirales_phage	47.8	6.4e-58
WP_021364429.1|1976463_1981785_+	regulator of chromosome condensation (RCC1) repeat family protein	NA	A0A0A8WEY5	Clostridium_phage	30.8	2.5e-108
WP_021364427.1|1981801_1982155_+	hypothetical protein	NA	A0A0A8WJF2	Clostridium_phage	41.2	2.7e-11
WP_003419670.1|1982417_1982678_+	hypothetical protein	NA	E2ELK7	Clostridium_phage	90.6	9.9e-35
WP_003419674.1|1982884_1983340_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003438466.1|1983567_1983987_-	helix-turn-helix transcriptional regulator	NA	S5MUV6	Brevibacillus_phage	37.2	5.4e-06
WP_003428146.1|1984285_1984495_+	helix-turn-helix transcriptional regulator	NA	Q5YAA3	Bacillus_phage	47.2	5.9e-06
WP_009889160.1|1984526_1984736_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003428144.1|1984952_1985351_-	helix-turn-helix domain-containing protein	NA	A0A1L2JY18	Aeribacillus_phage	29.7	2.7e-07
1986828:1986846	attR	TAAATTTTTTGCCATTTCA	NA	NA	NA	NA
>prophage 5
NZ_CP010888	Clostridioides difficile strain 08ACD0030 chromosome, complete genome	4167076	2067031	2076758	4167076		Pandoravirus(37.5%)	11	NA	NA
WP_003438628.1|2067031_2067616_+	aminodeoxychorismate/anthranilate synthase component II	NA	A0A0P0IKJ1	Acinetobacter_phage	52.6	1.1e-57
WP_003438631.1|2067617_2068967_+	aminodeoxychorismate synthase component I	NA	S4VNU7	Pandoravirus	41.2	2.2e-37
WP_003438634.1|2068956_2069700_+	aminotransferase class IV	NA	NA	NA	NA	NA
WP_003438637.1|2069733_2070435_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003429416.1|2070460_2071033_+	GTP cyclohydrolase I FolE	NA	E7DN69	Pneumococcus_phage	51.6	3.0e-44
WP_003438639.1|2071096_2071888_+	dihydropteroate synthase	NA	A0A0B5J4J5	Pandoravirus	28.8	1.1e-23
WP_009889257.1|2071898_2072264_+	dihydroneopterin aldolase	NA	NA	NA	NA	NA
WP_003438641.1|2072256_2072763_+	2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase	NA	S4VNV0	Pandoravirus	35.2	1.2e-12
WP_003419887.1|2072743_2073529_+	3-deoxy-7-phosphoheptulonate synthase	NA	E3T537	Cafeteria_roenbergensis_virus	27.9	1.7e-13
WP_009896376.1|2073783_2075574_+	DNA primase	NA	A0A0K1LMQ9	Caulobacter_phage	32.6	1.2e-51
WP_003429425.1|2075591_2076758_+	RNA polymerase sigma factor RpoD	NA	M4SMP8	Cyanophage	36.8	9.6e-37
>prophage 6
NZ_CP010888	Clostridioides difficile strain 08ACD0030 chromosome, complete genome	4167076	2087986	2100212	4167076		Streptococcus_phage(100.0%)	13	NA	NA
WP_061364319.1|2087986_2089381_+	cell division protein FtsK	NA	A0A1S5SFB5	Streptococcus_phage	66.2	3.9e-178
WP_022620534.1|2089564_2090761_+	XRE family transcriptional regulator	NA	A0A1S5SEX3	Streptococcus_phage	62.8	7.3e-149
WP_005340705.1|2090773_2090908_+	DUF3789 domain-containing protein	NA	NA	NA	NA	NA
WP_002323342.1|2090908_2091130_+	hypothetical protein	NA	A0A1S5SEY0	Streptococcus_phage	87.7	9.0e-29
WP_022620533.1|2091200_2091827_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_044298020.1|2091915_2092212_+	hypothetical protein	NA	NA	NA	NA	NA
WP_022620531.1|2092130_2092634_+	antirestriction protein ArdA	NA	NA	NA	NA	NA
WP_044298016.1|2092651_2093155_+	antirestriction protein ArdA	NA	A0A1S5SF25	Streptococcus_phage	61.4	2.6e-55
WP_004843362.1|2093264_2093663_+	conjugal transfer protein	NA	A0A1S5SEX7	Streptococcus_phage	73.0	3.2e-48
WP_021379648.1|2093640_2096091_+	ATP-binding protein	NA	A0A1S5SF64	Streptococcus_phage	74.8	0.0e+00
WP_061364320.1|2096090_2098280_+	MFS transporter	NA	A0A1S5SF30	Streptococcus_phage	59.8	2.0e-184
WP_022620523.1|2098276_2099284_+	bifunctional lysozyme/C40 family peptidase	NA	A0A1S5SEZ8	Streptococcus_phage	69.9	8.6e-135
WP_061364321.1|2099300_2100212_+	conjugal transfer protein	NA	A0A1S5SF22	Streptococcus_phage	50.8	2.5e-80
>prophage 7
NZ_CP010888	Clostridioides difficile strain 08ACD0030 chromosome, complete genome	4167076	2969169	2983655	4167076		Streptococcus_phage(90.0%)	15	NA	NA
WP_010776653.1|2969169_2969496_+	YdcP family protein	NA	A0A1S5SF38	Streptococcus_phage	71.6	1.2e-37
WP_010776654.1|2969510_2969894_+	YdcP family protein	NA	A0A1S5SF96	Streptococcus_phage	63.8	2.4e-37
WP_010776655.1|2969991_2970477_+	hypothetical protein	NA	NA	NA	NA	NA
WP_021367531.1|2970593_2971988_+	cell division protein FtsK	NA	A0A1S5SFB5	Streptococcus_phage	65.5	8.2e-176
WP_071608763.1|2972189_2973389_+	XRE family transcriptional regulator	NA	A0A1S5SEX3	Streptococcus_phage	61.6	2.5e-141
WP_021364856.1|2973396_2973531_+	DUF3789 domain-containing protein	NA	NA	NA	NA	NA
WP_021381640.1|2974272_2976183_+	group II intron reverse transcriptase/maturase	NA	A0A0U4J920	Pseudomonas_phage	29.8	5.4e-37
WP_003436839.1|2976349_2976511_+	hypothetical protein	NA	A0A1S5SEY0	Streptococcus_phage	83.0	4.4e-17
WP_003437218.1|2976595_2977198_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_022620436.1|2977294_2977591_+	hypothetical protein	NA	NA	NA	NA	NA
WP_021364852.1|2977509_2978013_+	antirestriction protein ArdA	NA	NA	NA	NA	NA
WP_021362179.1|2978015_2978519_+	antirestriction protein ArdA	NA	A0A1S5SF25	Streptococcus_phage	60.8	1.3e-54
WP_022620433.1|2978636_2979026_+	conjugal transfer protein	NA	A0A1S5SEX7	Streptococcus_phage	72.2	2.6e-47
WP_021377542.1|2979012_2981463_+	ATP-binding protein	NA	A0A1S5SF64	Streptococcus_phage	76.2	0.0e+00
WP_021381636.1|2981462_2983655_+	MFS transporter	NA	A0A1S5SF30	Streptococcus_phage	58.6	1.5e-176
>prophage 8
NZ_CP010888	Clostridioides difficile strain 08ACD0030 chromosome, complete genome	4167076	2992996	3000305	4167076	integrase	Streptococcus_phage(83.33%)	10	2991868:2991882	3006436:3006450
2991868:2991882	attL	TTTATCTATTTTATT	NA	NA	NA	NA
WP_022620514.1|2992996_2993185_+	cysteine-rich KTR domain-containing protein	NA	D0R0F6	Streptococcus_phage	59.6	1.4e-14
WP_021367896.1|2993303_2993663_-	helix-turn-helix transcriptional regulator	NA	A0A1S5SFA6	Streptococcus_phage	44.1	1.5e-20
WP_021364210.1|2994083_2994503_+	sigma-70 family RNA polymerase sigma factor	NA	A0A1S5SEW0	Streptococcus_phage	37.2	1.0e-20
WP_021364212.1|2994506_2994755_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_004613735.1|2995136_2995340_+	excisionase	NA	A0A1S5SF07	Streptococcus_phage	82.1	2.5e-25
WP_021367898.1|2995417_2996608_+|integrase	site-specific integrase	integrase	A0A1S5SEW7	Streptococcus_phage	67.0	4.7e-156
WP_003433829.1|2996937_2997627_-	Crp/Fnr family transcriptional regulator	NA	NA	NA	NA	NA
WP_003423346.1|2997689_2998538_-	MurR/RpiR family transcriptional regulator	NA	NA	NA	NA	NA
WP_021362704.1|2998556_2999444_-	ROK family protein	NA	NA	NA	NA	NA
WP_003433827.1|2999501_3000305_-	hypothetical protein	NA	A0A2I7QV58	Vibrio_phage	23.6	9.3e-07
3006436:3006450	attR	TTTATCTATTTTATT	NA	NA	NA	NA
>prophage 9
NZ_CP010888	Clostridioides difficile strain 08ACD0030 chromosome, complete genome	4167076	3634179	3643132	4167076		Catovirus(50.0%)	8	NA	NA
WP_009897930.1|3634179_3636093_-	polysaccharide biosynthesis protein	NA	A0A1V0SAI8	Catovirus	29.8	1.1e-26
WP_003431768.1|3636176_3637268_-	glycosyltransferase	NA	A0A1V0SL50	Klosneuvirus	26.2	1.8e-16
WP_169460753.1|3637273_3638617_-	nucleotide sugar dehydrogenase	NA	A0A127AXI2	Bacillus_phage	43.6	2.3e-90
WP_003426498.1|3638594_3639347_-	glycosyltransferase family 2 protein	NA	A0A1V0SAH6	Catovirus	40.5	4.6e-16
WP_004454111.1|3639394_3640303_-	glycosyltransferase family 2 protein	NA	NA	NA	NA	NA
WP_003422862.1|3640324_3641074_-	glycosyltransferase family 2 protein	NA	A0A1V0SAH6	Catovirus	38.8	1.2e-16
WP_009891031.1|3641102_3642278_-	CDP-glycerol glycerophosphotransferase family protein	NA	NA	NA	NA	NA
WP_009897935.1|3642292_3643132_-	glycosyltransferase family 2 protein	NA	A0A2P1ELT8	Moumouvirus	26.3	7.0e-05
