assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_001572685.1_ASM157268v1	NZ_CP012911	Streptococcus suis strain NSUI060 chromosome, complete genome	1	1371281-1371645	1,1,1	CRISPRCasFinder,CRT,PILER-CR	no	csn2,cas2,cas1,cas9	cas3,DEDDh,RT,csn2,cas2,cas1,cas9,csa3,DinG	Type II-C,Type II-A,Type II-B	GTTTTACTGTTACTTAAATCTTGAGAGTACAAAAA,GTTTTACTGTTACTTAAATCTTGAGAGTACAAAAAC,GTTTTACTGTTACTTAAATCTTGAGAGTACAAAAAC	35,36,36	0	0	NA	NA	NA:NA:NA	5,5,4	5	TypeII-C,TypeII-A,TypeII-B	cas3,DEDDh,RT,csn2,cas2,cas1,cas9,csa3,DinG	NA,NA|359aa|down_7|NZ_CP012911.1_1382689_1383766_+,NA|103aa|down_8|NZ_CP012911.1_1383887_1384196_-	NA|206aa|up_9|NZ_CP012911.1_1361088_1361706_-	cd04672, Nudix_Hydrolase_14, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X	NA|247aa|up_8|NZ_CP012911.1_1361692_1362433_-	pfam01643, Acyl-ACP_TE, Acyl-ACP thioesterase	NA|376aa|up_7|NZ_CP012911.1_1362663_1363791_-	PRK08599, PRK08599, oxygen-independent coproporphyrinogen III oxidase	NA|193aa|up_6|NZ_CP012911.1_1363885_1364464_+	pfam04892, VanZ, VanZ like family	NA|756aa|up_5|NZ_CP012911.1_1364598_1366866_-	cd04300, GT35_Glycogen_Phosphorylase, glycogen phosphorylase and similar proteins	NA|238aa|up_4|NZ_CP012911.1_1367041_1367755_-	PRK05819, deoD, DeoD-type purine-nucleoside phosphorylase	NA|270aa|up_3|NZ_CP012911.1_1367787_1368597_-	PRK08202, PRK08202, purine nucleoside phosphorylase; Provisional	NA|119aa|up_2|NZ_CP012911.1_1368608_1368965_-	cd03034, ArsC_ArsC, Arsenate Reductase (ArsC) family, ArsC subfamily; arsenic reductases similar to that encoded by arsC on the R733 plasmid of Escherichia coli	NA|404aa|up_1|NZ_CP012911.1_1368964_1370176_-	PRK05362, PRK05362, phosphopentomutase; Provisional	NA|225aa|up_0|NZ_CP012911.1_1370504_1371179_-	PRK00702, PRK00702, ribose-5-phosphate isomerase RpiA	NA|430aa|down_0|NZ_CP012911.1_1371792_1373082_-	pfam01609, DDE_Tnp_1, Transposase DDE domain	csn2|349aa|down_1|NZ_CP012911.1_1373285_1374332_-	cd12217, Stu0660_Csn2, Stu0660-like CRISPR/Cas system-associated protein Csn2	cas2|108aa|down_2|NZ_CP012911.1_1374328_1374652_-	COG3512, COG3512, CRISPR-associated protein, Cas2 homolog [Defense mechanisms]	cas1|305aa|down_3|NZ_CP012911.1_1374648_1375563_-	TIGR03639, cas1_NMENI, CRISPR-associated endonuclease Cas1, subtype II/NMENI	NA|419aa|down_4|NZ_CP012911.1_1375783_1377040_+	COG3464, COG3464, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	cas9|1123aa|down_5|NZ_CP012911.1_1377152_1380521_-	TIGR01865, conserved_hypothetical_protein, CRISPR subtype II/NMENI RNA-guided endonuclease Cas9/Csn1	NA|458aa|down_6|NZ_CP012911.1_1381204_1382578_+	PRK05291, trmE, tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE	NA|359aa|down_7|NZ_CP012911.1_1382689_1383766_+	NA	NA|103aa|down_8|NZ_CP012911.1_1383887_1384196_-	NA	NA|488aa|down_9|NZ_CP012911.1_1384284_1385748_-	cd03399, SPFH_flotillin, Flotillin or reggie family; SPFH (stomatin, prohibitin, flotillin, and HflK/C) superfamily
GCF_001572685.1_ASM157268v1	NZ_CP012911	Streptococcus suis strain NSUI060 chromosome, complete genome	2	1423547-1423662	2	CRISPRCasFinder	no		cas3,DEDDh,RT,csn2,cas2,cas1,cas9,csa3,DinG	Orphan	CTAGCTCGGGGATAAAACAGTCTCCCAGAC	30	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,RT,csn2,cas2,cas1,cas9,csa3,DinG	NA|62aa|up_1|NZ_CP012911.1_1422555_1422741_+,NA|76aa|down_2|NZ_CP012911.1_1425585_1425813_-	NA|475aa|up_9|NZ_CP012911.1_1412126_1413551_-	COG2723, BglB, Beta-glucosidase/6-phospho-beta-glucosidase/beta-galactosidase [Carbohydrate transport and metabolism]	NA|614aa|up_8|NZ_CP012911.1_1413565_1415407_-	TIGR01995, beta-glucosides_PTS_EIIBCA, PTS system, beta-glucoside-specific IIABC component	NA|280aa|up_7|NZ_CP012911.1_1415417_1416257_-	PRK09772, PRK09772, transcriptional antiterminator BglG; Provisional	NA|553aa|up_6|NZ_CP012911.1_1416562_1418221_+	pfam05833, FbpA, Fibronectin-binding protein A N-terminus (FbpA)	NA|239aa|up_5|NZ_CP012911.1_1418246_1418963_-	COG3527, AlsD, Alpha-acetolactate decarboxylase [Secondary metabolites biosynthesis, transport, and catabolism]	NA|410aa|up_4|NZ_CP012911.1_1418966_1420196_-	TIGR02917, TPR_domain_protein, putative PEP-CTERM system TPR-repeat lipoprotein	NA|389aa|up_3|NZ_CP012911.1_1420185_1421352_-	COG0628, yhhT, Predicted permease, member of the PurR regulon [General function prediction only]	NA|335aa|up_2|NZ_CP012911.1_1421487_1422492_+	pfam10282, Lactonase, Lactonase, 7-bladed beta-propeller	NA|62aa|up_1|NZ_CP012911.1_1422555_1422741_+	NA	NA|214aa|up_0|NZ_CP012911.1_1422773_1423415_-	COG1011, COG1011, Predicted hydrolase (HAD superfamily) [General function prediction only]	NA|436aa|down_0|NZ_CP012911.1_1423666_1424974_-	PRK00077, eno, enolase; Provisional	NA|151aa|down_1|NZ_CP012911.1_1425123_1425576_+	pfam07997, DUF1694, Protein of unknown function (DUF1694)	NA|76aa|down_2|NZ_CP012911.1_1425585_1425813_-	NA	NA|376aa|down_3|NZ_CP012911.1_1425803_1426931_-	pfam02595, Gly_kinase, Glycerate kinase family	NA|217aa|down_4|NZ_CP012911.1_1427038_1427689_+	cd04302, HAD_5NT, haloacid dehalogenase (HAD)-like 5'-nucleotidases similar to the Pseudomonas aeruginosa PA0065	NA|212aa|down_5|NZ_CP012911.1_1427719_1428355_-	cd07500, HAD_PSP, phosphoserine phosphatase (PSP), similar to Methanococcus Jannaschii PSP and Saccharomyces cerevisiae SER2p	NA|575aa|down_6|NZ_CP012911.1_1428406_1430131_-	PRK04778, PRK04778, septation ring formation regulator EzrA; Provisional	NA|651aa|down_7|NZ_CP012911.1_1430219_1432172_-	PRK05644, gyrB, DNA gyrase subunit B; Validated	NA|180aa|down_8|NZ_CP012911.1_1432353_1432893_-	cd03135, GATase1_DJ-1, Type 1 glutamine amidotransferase (GATase1)-like domain found in Human DJ-1	NA|410aa|down_9|NZ_CP012911.1_1432906_1434136_-	COG0772, FtsW, Bacterial cell division membrane protein [Cell division and chromosome partitioning]
GCF_001572685.1_ASM157268v1	NZ_CP012911	Streptococcus suis strain NSUI060 chromosome, complete genome	3	1989190-1989299	3	CRISPRCasFinder	no		cas3,DEDDh,RT,csn2,cas2,cas1,cas9,csa3,DinG	Orphan	ACTTGATTGGTTGTTAGGTCAACAGT	26	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,RT,csn2,cas2,cas1,cas9,csa3,DinG	NA|86aa|up_8|NZ_CP012911.1_1978140_1978398_-,NA|104aa|up_3|NZ_CP012911.1_1983090_1983402_-,NA	NA|130aa|up_9|NZ_CP012911.1_1977656_1978046_-	pfam07006, DUF1310, Protein of unknown function (DUF1310)	NA|86aa|up_8|NZ_CP012911.1_1978140_1978398_-	NA	NA|126aa|up_7|NZ_CP012911.1_1978444_1978822_-	pfam07006, DUF1310, Protein of unknown function (DUF1310)	NA|131aa|up_6|NZ_CP012911.1_1979103_1979496_-	pfam07006, DUF1310, Protein of unknown function (DUF1310)	NA|778aa|up_5|NZ_CP012911.1_1979661_1981995_-	PRK00409, PRK00409, recombination and DNA strand exchange inhibitor protein; Reviewed	NA|183aa|up_4|NZ_CP012911.1_1982545_1983094_-	COG1286, CvpA, Uncharacterized membrane protein, required for colicin V production [General function prediction only]	NA|104aa|up_3|NZ_CP012911.1_1983090_1983402_-	NA	NA|238aa|up_2|NZ_CP012911.1_1983459_1984173_-	TIGR02404, Trehalose_operon_transcriptional_repressor, trehalose operon repressor, B	NA|665aa|up_1|NZ_CP012911.1_1984405_1986400_+	TIGR01992, phosphotransferase_system_trehalose_permease, PTS system, trehalose-specific IIBC component	NA|542aa|up_0|NZ_CP012911.1_1986480_1988106_+	TIGR02403, Trehalose-6-phosphate_hydrolase, alpha,alpha-phosphotrehalase	NA|328aa|down_0|NZ_CP012911.1_1989986_1990970_-	COG0673, MviM, Predicted dehydrogenases and related proteins [General function prediction only]	NA|297aa|down_1|NZ_CP012911.1_1991054_1991945_+	PRK00996, PRK00996, ribonuclease HIII; Provisional	NA|210aa|down_2|NZ_CP012911.1_1991954_1992584_+	TIGR02227, Inactive_signal_peptidase_IA	NA|830aa|down_3|NZ_CP012911.1_1992647_1995137_+	TIGR01448, recD_rel, helicase, putative, RecD/TraA family	NA|314aa|down_4|NZ_CP012911.1_1995175_1996117_-	cd02094, P-type_ATPase_Cu-like, P-type heavy metal-transporting ATPase, similar to human copper-transporting ATPases, ATP7A and ATP7B	NA|60aa|down_5|NZ_CP012911.1_1997069_1997249_-	COG2217, ZntA, Cation transport ATPase [Inorganic ion transport and metabolism]	NA|270aa|down_6|NZ_CP012911.1_1997409_1998219_-	cd01399, GlcN6P_deaminase, GlcN6P_deaminase: Glucosamine-6-phosphate (GlcN6P) deaminase subfamily; GlcN6P deaminase catalyzes the reversible conversion of GlcN6P to D-fructose-6-phosphate (Fru6P) and ammonium	NA|343aa|down_7|NZ_CP012911.1_1998312_1999341_-	cd13561, PBP2_SsuA_like_4, Putative substrate binding domain of sulfonate binding protein-like, the type 2 periplasmic binding protein fold	NA|264aa|down_8|NZ_CP012911.1_1999371_2000163_-	COG1116, TauB, ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]	NA|253aa|down_9|NZ_CP012911.1_2000147_2000906_-	COG0600, TauC, ABC-type nitrate/sulfonate/bicarbonate transport system, permease component [Inorganic ion transport and metabolism]
