The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP014274	Stenotrophomonas sp. KCTC 12332, complete genome	4541594	1916812	1923749	4541594		uncultured_Caudovirales_phage(83.33%)	8	NA	NA
WP_062167456.1|1916812_1918291_-	SulP family inorganic anion transporter	NA	A0A2H4J153	uncultured_Caudovirales_phage	67.1	4.3e-167
WP_054658164.1|1918558_1918978_-	arsenate reductase (glutaredoxin)	NA	A0A2H4J8T1	uncultured_Caudovirales_phage	63.7	2.5e-43
WP_057506595.1|1918974_1919715_-	arsenical resistance protein ArsH	NA	A0A2H4J5V6	uncultured_Caudovirales_phage	68.9	1.3e-84
WP_054658162.1|1919755_1920070_+	winged helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_057506594.1|1920096_1920588_+	arsenate reductase ArsC	NA	A0A2H4J8A6	uncultured_Caudovirales_phage	40.3	1.6e-25
WP_054658160.1|1920608_1921667_+	ACR3 family arsenite efflux transporter	NA	NA	NA	NA	NA
WP_054658158.1|1921670_1922654_+	thioredoxin-disulfide reductase	NA	A0A2I2L5E1	Orpheovirus	44.1	1.7e-63
WP_062171532.1|1922678_1923749_+	FAD-dependent oxidoreductase	NA	A0A2H4J2Q2	uncultured_Caudovirales_phage	57.6	1.3e-91
>prophage 2
NZ_CP014274	Stenotrophomonas sp. KCTC 12332, complete genome	4541594	1949443	1998620	4541594	integrase,protease,tRNA,transposase	Xanthomonas_phage(25.0%)	38	1966244:1966259	1978763:1978778
WP_082746536.1|1949443_1950715_+|integrase	tyrosine-type recombinase/integrase	integrase	NA	NA	NA	NA
WP_062167475.1|1954442_1955708_+	ferredoxin reductase family protein	NA	NA	NA	NA	NA
WP_156455959.1|1957226_1958747_+|transposase	IS91 family transposase	transposase	NA	NA	NA	NA
WP_062167478.1|1959071_1959794_-	VIT family protein	NA	NA	NA	NA	NA
WP_136007218.1|1961181_1961454_-	hypothetical protein	NA	NA	NA	NA	NA
WP_062171537.1|1961706_1963179_+|transposase	IS91 family transposase	transposase	NA	NA	NA	NA
WP_016448223.1|1963493_1964423_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_065868187.1|1965124_1965751_-	2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase	NA	NA	NA	NA	NA
WP_062167482.1|1965836_1967117_-	mechanosensitive ion channel family protein	NA	NA	NA	NA	NA
1966244:1966259	attL	CGATCAGGGCGAAGCG	NA	NA	NA	NA
WP_062167484.1|1967117_1967486_-	dihydroneopterin aldolase	NA	NA	NA	NA	NA
WP_082746537.1|1967552_1968440_-|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD	tRNA	A0A0R6PI74	Moraxella_phage	54.4	1.5e-77
WP_082746538.1|1970799_1972140_-	transcriptional regulator	NA	NA	NA	NA	NA
WP_062167488.1|1972383_1973472_-|integrase	site-specific integrase	integrase	NA	NA	NA	NA
WP_062167490.1|1973576_1974467_+	DNA-binding protein	NA	NA	NA	NA	NA
WP_062167492.1|1975228_1975600_-	hypothetical protein	NA	NA	NA	NA	NA
WP_156455794.1|1975733_1975871_+	hypothetical protein	NA	NA	NA	NA	NA
WP_156455795.1|1976092_1976290_+	hypothetical protein	NA	NA	NA	NA	NA
WP_156455796.1|1976503_1977781_+	replication protein	NA	S0F3I3	Stenotrophomonas_phage	44.6	1.4e-68
WP_062167499.1|1977794_1978085_+	single-stranded DNA-binding protein	NA	B1NI78	Stenotrophomonas_phage	60.7	2.2e-22
WP_062167501.1|1978288_1978546_+	hypothetical protein	NA	NA	NA	NA	NA
WP_065868184.1|1978658_1980164_+	hypothetical protein	NA	A0A077JDC5	Xanthomonas_phage	44.1	6.8e-67
1978763:1978778	attR	CGATCAGGGCGAAGCG	NA	NA	NA	NA
WP_062167505.1|1980165_1980480_+	DUF2523 domain-containing protein	NA	A0A077JCZ2	Xanthomonas_phage	57.6	1.7e-25
WP_062167507.1|1980476_1981640_+	zonular occludens toxin	NA	A0A077JGB2	Xanthomonas_phage	62.0	6.5e-126
WP_156455797.1|1981641_1982046_-	hypothetical protein	NA	NA	NA	NA	NA
WP_062167511.1|1983200_1983938_-	copper homeostasis protein CutC	NA	NA	NA	NA	NA
WP_062167513.1|1983934_1984942_-	N(4)-(beta-N-acetylglucosaminyl)-L-asparaginase	NA	NA	NA	NA	NA
WP_062167515.1|1984973_1986014_-	glucokinase	NA	NA	NA	NA	NA
WP_062167517.1|1986103_1986490_-	fluoride efflux transporter CrcB	NA	A0A2H4J148	uncultured_Caudovirales_phage	54.2	9.6e-26
WP_082746541.1|1986527_1987823_-	replication-associated recombination protein A	NA	G3MBE0	Bacillus_virus	36.5	5.4e-73
WP_062167520.1|1987949_1988588_-	outer membrane lipoprotein chaperone LolA	NA	NA	NA	NA	NA
WP_062167522.1|1988681_1991048_-	DNA translocase FtsK	NA	G1D482	Mycobacterium_virus	45.9	3.0e-85
WP_062167524.1|1991336_1992305_+	thioredoxin-disulfide reductase	NA	A0A2I2L5E1	Orpheovirus	42.9	6.9e-65
WP_156455798.1|1992337_1993189_+	hypothetical protein	NA	NA	NA	NA	NA
WP_062167529.1|1993221_1994355_+	N-acetyltransferase	NA	NA	NA	NA	NA
WP_062167531.1|1994351_1995086_+|tRNA	leucyl/phenylalanyl-tRNA--protein transferase	tRNA	NA	NA	NA	NA
WP_005409596.1|1995184_1995403_+	translation initiation factor IF-1	NA	NA	NA	NA	NA
WP_062167532.1|1995709_1997989_-|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	protease	A0A223W0B1	Agrobacterium_phage	43.8	1.2e-171
WP_062167534.1|1998299_1998620_-|protease	ATP-dependent Clp protease adapter ClpS	protease	A0A1B1IT64	uncultured_Mediterranean_phage	46.2	1.7e-12
>prophage 3
NZ_CP014274	Stenotrophomonas sp. KCTC 12332, complete genome	4541594	2070850	2138701	4541594	tRNA,transposase,plate	uncultured_Caudovirales_phage(22.22%)	52	NA	NA
WP_156455802.1|2070850_2071408_-|tRNA	tRNA adenosine(34) deaminase TadA	tRNA	S4VYZ2	Pandoravirus	38.2	1.6e-05
WP_156455803.1|2071575_2072241_-	hypothetical protein	NA	NA	NA	NA	NA
WP_062167636.1|2072412_2073975_-	GGDEF domain-containing protein	NA	A0A127AWB9	Bacillus_phage	36.8	6.0e-18
WP_062167637.1|2074335_2075328_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_062167638.1|2075825_2077103_-|tRNA	serine--tRNA ligase	tRNA	A0A1B1IVT2	uncultured_Mediterranean_phage	53.9	4.1e-97
WP_062167639.1|2077216_2077867_+	energy transducer TonB	NA	NA	NA	NA	NA
WP_082746546.1|2077975_2078476_+	TonB family protein	NA	NA	NA	NA	NA
WP_062167641.1|2078459_2079773_-	3-phosphoshikimate 1-carboxyvinyltransferase	NA	NA	NA	NA	NA
WP_062167643.1|2079914_2081153_-	prephenate dehydratase	NA	NA	NA	NA	NA
WP_062167644.1|2081203_2082289_-	3-phosphoserine/phosphohydroxythreonine transaminase	NA	M1Q1P2	Streptococcus_phage	45.9	7.0e-82
WP_062167645.1|2082430_2083243_-	FHA domain-containing protein	NA	NA	NA	NA	NA
WP_062167647.1|2083360_2083636_+	polyhydroxyalkanoic acid synthase	NA	NA	NA	NA	NA
WP_062167648.1|2083715_2084180_+	phasin family protein	NA	NA	NA	NA	NA
WP_062167650.1|2084404_2085223_+	YggS family pyridoxal phosphate-dependent enzyme	NA	NA	NA	NA	NA
WP_062171555.1|2085320_2086325_+	hypothetical protein	NA	NA	NA	NA	NA
WP_062167651.1|2086416_2087145_-	histidine utilization repressor	NA	NA	NA	NA	NA
WP_156455960.1|2087185_2088574_-	formimidoylglutamate deiminase	NA	NA	NA	NA	NA
WP_062167652.1|2088616_2089822_+	imidazolonepropionase	NA	NA	NA	NA	NA
WP_062167653.1|2089844_2091392_+	histidine ammonia-lyase	NA	A0A1V0S940	Catovirus	40.9	3.4e-82
WP_156455804.1|2091473_2092037_-	hypothetical protein	NA	NA	NA	NA	NA
WP_062167656.1|2093004_2094672_+	urocanate hydratase	NA	NA	NA	NA	NA
WP_082746712.1|2094765_2095182_-	DoxX family protein	NA	NA	NA	NA	NA
WP_156455805.1|2095415_2095697_+	hypothetical protein	NA	NA	NA	NA	NA
WP_062167657.1|2096220_2097282_+	type VI secretion system protein TssA	NA	NA	NA	NA	NA
WP_062167658.1|2097318_2098110_-	OmpA family protein	NA	NA	NA	NA	NA
WP_062167659.1|2098112_2099096_-	type VI secretion system-associated protein TagF	NA	NA	NA	NA	NA
WP_082746713.1|2099092_2102764_-	type VI secretion system membrane subunit TssM	NA	NA	NA	NA	NA
WP_065868177.1|2102827_2104216_-	hypothetical protein	NA	NA	NA	NA	NA
WP_082746547.1|2104295_2104556_-	PAAR domain-containing protein	NA	NA	NA	NA	NA
WP_062167663.1|2104657_2105542_-	M15 family metallopeptidase	NA	A0A2H4J4U2	uncultured_Caudovirales_phage	31.5	9.3e-08
WP_062167664.1|2105998_2106484_+	hypothetical protein	NA	NA	NA	NA	NA
WP_082746548.1|2107680_2107950_-|transposase	transposase	transposase	NA	NA	NA	NA
WP_156455806.1|2108155_2108818_-	hypothetical protein	NA	NA	NA	NA	NA
WP_062167665.1|2109293_2110388_-	hypothetical protein	NA	NA	NA	NA	NA
WP_156455807.1|2110533_2111502_-	hypothetical protein	NA	NA	NA	NA	NA
WP_156455808.1|2111554_2115055_-	hypothetical protein	NA	NA	NA	NA	NA
WP_156455809.1|2115047_2116019_-	DUF4123 domain-containing protein	NA	NA	NA	NA	NA
WP_062167670.1|2116015_2118742_-	type VI secretion system tip protein VgrG	NA	A0A2H4JCD4	uncultured_Caudovirales_phage	25.6	2.0e-37
WP_062167671.1|2118867_2119218_-	hypothetical protein	NA	NA	NA	NA	NA
WP_062167672.1|2119239_2121990_-	type VI secretion system ATPase TssH	NA	A0A223W0B1	Agrobacterium_phage	30.2	7.0e-86
WP_062167674.1|2122056_2123142_-|plate	type VI secretion system baseplate subunit TssG	plate	NA	NA	NA	NA
WP_062167675.1|2123105_2124941_-|plate	type VI secretion system baseplate subunit TssF	plate	NA	NA	NA	NA
WP_057628615.1|2124940_2125432_-|plate	type VI secretion system baseplate subunit TssE	plate	NA	NA	NA	NA
WP_057628616.1|2125552_2126050_-	type VI secretion system tube protein Hcp	NA	NA	NA	NA	NA
WP_062167676.1|2126196_2127687_-	type VI secretion system contractile sheath large subunit	NA	NA	NA	NA	NA
WP_057628618.1|2127690_2128191_-	type VI secretion system contractile sheath small subunit	NA	NA	NA	NA	NA
WP_065868174.1|2128223_2128853_-	hypothetical protein	NA	NA	NA	NA	NA
WP_062171562.1|2129093_2129705_+	type VI secretion system lipoprotein TssJ	NA	NA	NA	NA	NA
WP_062167677.1|2129925_2131260_+|plate	type VI secretion system baseplate subunit TssK	plate	NA	NA	NA	NA
WP_062167678.1|2131259_2132051_+	DotU family type IV/VI secretion system protein	NA	NA	NA	NA	NA
WP_156455810.1|2136647_2137292_+	hypothetical protein	NA	NA	NA	NA	NA
WP_156455811.1|2137593_2138701_-|transposase	IS3 family transposase	transposase	S5WIU1	Leptospira_phage	37.4	1.6e-41
>prophage 4
NZ_CP014274	Stenotrophomonas sp. KCTC 12332, complete genome	4541594	3036162	3050040	4541594	integrase	Bacillus_virus(12.5%)	12	3027543:3027559	3050389:3050405
3027543:3027559	attL	TCGCCGCCGGACAGTTC	NA	NA	NA	NA
WP_049440237.1|3036162_3037152_-	endonuclease	NA	A6XMH8	Bacillus_virus	36.2	7.1e-49
WP_065868228.1|3037274_3037763_-	JAB domain-containing protein	NA	NA	NA	NA	NA
WP_062168911.1|3037783_3038740_-	DUF932 domain-containing protein	NA	A0A0H4INH5	Stenotrophomonas_phage	44.4	3.8e-63
WP_065868137.1|3039062_3039812_-	M48 family metallopeptidase	NA	NA	NA	NA	NA
WP_062168913.1|3039814_3043126_-	type I restriction endonuclease subunit R	NA	A0A220A398	Liberibacter_phage	27.5	2.4e-56
WP_062168915.1|3043122_3044352_-	restriction endonuclease subunit S	NA	A0A1V0SLK8	Klosneuvirus	24.0	1.3e-07
WP_082746592.1|3044341_3045460_-	virulence RhuM family protein	NA	Q9JMN3	Wolbachia_phage	44.1	8.9e-64
WP_049440247.1|3045491_3047018_-	type I restriction-modification system subunit M	NA	A0A2H4PQP4	Staphylococcus_phage	39.4	1.3e-89
WP_065868136.1|3047040_3047646_-	restriction endonuclease subunit S	NA	NA	NA	NA	NA
WP_049440251.1|3047762_3048056_-|integrase	tyrosine-type recombinase/integrase	integrase	A7X7X0	Dichelobacter_phage	56.5	8.3e-22
WP_062168919.1|3048556_3049261_+	serine/threonine-protein phosphatase	NA	NA	NA	NA	NA
WP_062168922.1|3049311_3050040_-	DNA polymerase III subunit epsilon	NA	A0A1X9SH08	Bradyrhizobium_phage	40.4	1.4e-38
3050389:3050405	attR	TCGCCGCCGGACAGTTC	NA	NA	NA	NA
>prophage 5
NZ_CP014274	Stenotrophomonas sp. KCTC 12332, complete genome	4541594	3464135	3474055	4541594		Escherichia_phage(28.57%)	9	NA	NA
WP_062169465.1|3464135_3465482_+	phosphomannomutase/phosphoglucomutase	NA	A0A127AWJ1	Bacillus_phage	27.3	2.0e-30
WP_062169467.1|3465490_3466894_+	mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase	NA	A0A1V0SH58	Hokovirus	30.1	3.5e-49
WP_062169469.1|3466994_3467894_-	dTDP-4-dehydrorhamnose reductase	NA	A0A291LA50	Escherichia_phage	38.2	4.8e-28
WP_062169471.1|3467890_3468448_-	dTDP-4-dehydrorhamnose 3,5-epimerase	NA	I7HJC4	Enterobacteria_phage	52.2	7.1e-46
WP_062169473.1|3468444_3469332_-	glucose-1-phosphate thymidylyltransferase RfbA	NA	A0A291LA53	Escherichia_phage	58.9	2.4e-96
WP_062169475.1|3469383_3470439_-	dTDP-glucose 4,6-dehydratase	NA	I7HTA3	Enterobacteria_phage	48.9	7.0e-87
WP_062169477.1|3470685_3471432_+	electron transfer flavoprotein subunit beta/FixA family protein	NA	NA	NA	NA	NA
WP_062169479.1|3471431_3472367_+	electron transfer flavoprotein subunit alpha/FixB family protein	NA	NA	NA	NA	NA
WP_062171800.1|3472951_3474055_+	DegT/DnrJ/EryC1/StrS family aminotransferase	NA	A0A2P1ELT3	Moumouvirus	34.6	1.9e-26
