The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP014269	Escherichia coli B strain C3029 chromosome, complete genome	4569185	597047	669795	4569185	transposase,holin,tRNA,protease	Vibrio_phage(12.5%)	57	NA	NA
WP_001162160.1|597047_598400_+|protease	metalloprotease PmbA	protease	NA	NA	NA	NA
WP_001232240.1|598582_598969_+	cytochrome b562	NA	NA	NA	NA	NA
WP_001106238.1|599013_599478_-	anaerobic ribonucleoside-triphosphate reductase-activating protein	NA	K4F9T1	Cronobacter_phage	57.1	1.1e-52
WP_000187778.1|599636_601775_-	anaerobic ribonucleoside-triphosphate reductase	NA	A0A2I7QNQ7	Vibrio_phage	64.5	1.5e-266
WP_001320168.1|602168_603824_-	alpha,alpha-phosphotrehalase	NA	NA	NA	NA	NA
WP_001297258.1|603873_605295_-	PTS trehalose transporter subunit IIBC	NA	NA	NA	NA	NA
WP_001181324.1|605413_606361_-	HTH-type transcriptional regulator TreR	NA	C6ZCU4	Enterobacteria_phage	21.8	7.9e-13
WP_001387276.1|606545_606599_+	mgtA regulatory leader peptide MgtL	NA	NA	NA	NA	NA
WP_000471889.1|606739_609436_+	magnesium-translocating P-type ATPase	NA	M1HLC0	Paramecium_bursaria_Chlorella_virus	27.4	9.0e-46
WP_000047539.1|609641_610028_-	2-iminobutanoate/2-iminopropanoate deaminase	NA	NA	NA	NA	NA
WP_000148581.1|610100_610562_-	aspartate carbamoyltransferase regulatory subunit	NA	NA	NA	NA	NA
WP_000013046.1|610574_611510_-	aspartate carbamoyltransferase	NA	M1HWF9	Paramecium_bursaria_Chlorella_virus	40.2	2.9e-52
WP_001296693.1|611513_611648_-	pyr operon leader peptide	NA	NA	NA	NA	NA
WP_000230274.1|611928_612324_-	RidA family protein	NA	NA	NA	NA	NA
WP_000500685.1|612454_613168_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_001319729.1|613238_613832_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_001319730.1|613976_614429_+	toxin-antitoxin biofilm protein TabA	NA	NA	NA	NA	NA
WP_000036440.1|614551_616204_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000012907.1|616276_617281_-	ornithine carbamoyltransferase	NA	NA	NA	NA	NA
WP_000002953.1|617442_617859_+	ribonuclease E inhibitor RraB	NA	NA	NA	NA	NA
WP_001059397.1|617904_618408_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_000079628.1|618600_619797_+	DUF898 domain-containing protein	NA	NA	NA	NA	NA
WP_000416403.1|619852_622708_-|tRNA	valine--tRNA ligase	tRNA	A0A1V0SK04	Klosneuvirus	36.7	1.3e-140
WP_000786393.1|622707_623151_-	DNA polymerase III subunit chi	NA	NA	NA	NA	NA
WP_000397144.1|623504_625016_-	leucyl aminopeptidase	NA	Q6GYZ8	Mycoplasma_phage	38.0	6.0e-47
WP_000584114.1|625282_626383_+	LPS export ABC transporter permease LptF	NA	NA	NA	NA	NA
WP_001295681.1|626382_627465_+	LPS export ABC transporter permease LptG	NA	NA	NA	NA	NA
WP_001294573.1|627625_629128_-	DUF853 domain-containing protein	NA	A0A248XCZ8	Klebsiella_phage	44.2	4.6e-84
WP_001309159.1|629205_630204_-	DNA-binding transcriptional regulator IdnR	NA	NA	NA	NA	NA
WP_001128347.1|630270_631590_-	gnt-II system L-idonate transporter	NA	NA	NA	NA	NA
WP_000998695.1|631652_632417_-	gluconate 5-dehydrogenase	NA	NA	NA	NA	NA
WP_001197411.1|632440_633472_-	L-idonate 5-dehydrogenase	NA	NA	NA	NA	NA
WP_000896738.1|633688_634252_+	gluconokinase	NA	NA	NA	NA	NA
WP_001318460.1|634255_635275_-	NADPH-dependent aldehyde reductase Ahr	NA	A0A0G2Y405	Acanthamoeba_polyphaga_mimivirus	30.7	1.4e-44
WP_000483767.1|639832_641179_-|transposase	IS4-like element IS4 family transposase	transposase	NA	NA	NA	NA
WP_000179691.1|641787_643005_+	MFS transporter	NA	NA	NA	NA	NA
WP_000611568.1|643016_644135_+	Gfo/Idh/MocA family oxidoreductase	NA	NA	NA	NA	NA
WP_000594405.1|644177_644303_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000254999.1|644355_644613_-	hypothetical protein	NA	NA	NA	NA	NA
WP_085948656.1|644926_646093_+|transposase	IS3-like element IS911 family transposase	transposase	Q716C2	Shigella_phage	99.3	1.8e-184
WP_000625671.1|646028_646442_-	DUF2254 domain-containing protein	NA	NA	NA	NA	NA
WP_001293436.1|646504_648502_-|holin	choline BCCT transporter BetT	holin	A0A2I7QNT1	Vibrio_phage	25.9	7.4e-21
WP_085947616.1|648655_649812_-|transposase	IS3 family transposase	transposase	A0A0P0I4A4	Acinetobacter_phage	45.1	3.6e-68
WP_000177057.1|650745_651003_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000175457.1|651559_652327_-	Fe(3+) dicitrate ABC transporter ATP-binding protein FecE	NA	G3M9Y6	Bacillus_virus	24.8	6.4e-13
WP_000684856.1|652327_653284_-	Fe(3+) dicitrate ABC transporter permease subunit FecD	NA	A0A2H4IY97	uncultured_Caudovirales_phage	26.1	1.1e-17
WP_000125187.1|653280_654279_-	iron-dicitrate ABC transporter permease FecC	NA	NA	NA	NA	NA
WP_000879164.1|654275_655178_-	Fe(3+) dicitrate ABC transporter substrate-binding protein FecB	NA	NA	NA	NA	NA
WP_000188262.1|655222_657547_-	Fe(3+) dicitrate transport protein FecA	NA	NA	NA	NA	NA
WP_001068910.1|657633_658587_-	fec operon regulator FecR	NA	NA	NA	NA	NA
WP_001283626.1|658583_659105_-	RNA polymerase sigma factor FecI	NA	NA	NA	NA	NA
WP_000555341.1|660854_661112_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000871665.1|664620_665580_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001300855.1|665618_666518_-	transcriptional activator NhaR	NA	NA	NA	NA	NA
WP_000681360.1|666583_667750_-	Na+/H+ antiporter NhaA	NA	A0A2H4J5W3	uncultured_Caudovirales_phage	50.3	7.5e-90
WP_000935262.1|668279_668489_+	type I toxin-antitoxin system toxin MokC	NA	A0A0P0ZAX5	Stx2-converting_phage	73.9	8.0e-19
WP_001300563.1|668682_669795_-|transposase	IS4-like element IS421 family transposase	transposase	NA	NA	NA	NA
>prophage 2
NZ_CP014269	Escherichia coli B strain C3029 chromosome, complete genome	4569185	1294122	1307837	4569185	integrase,lysis	Enterobacteria_phage(62.5%)	21	1292890:1292903	1300207:1300220
1292890:1292903	attL	GTTGCGATTTTATT	NA	NA	NA	NA
WP_001318654.1|1294122_1295286_-|integrase	site-specific integrase	integrase	A0A088CD23	Shigella_phage	86.0	1.3e-198
WP_000488419.1|1295484_1295763_-	DUF4222 domain-containing protein	NA	M1FPC8	Enterobacteria_phage	98.9	1.7e-48
WP_000763373.1|1295810_1296029_-	TraR/DksA family transcriptional regulator	NA	M1FQT7	Enterobacteria_phage	95.8	1.8e-34
WP_000188870.1|1296127_1296343_-	hypothetical protein	NA	A0A1I9LJM7	Stx_converting_phage	100.0	1.0e-32
WP_001070454.1|1297124_1297457_+	SMR family multidrug efflux protein EmrE	NA	NA	NA	NA	NA
WP_001299444.1|1297504_1297654_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000709082.1|1297711_1299238_+	recombinase family protein	NA	Q3HQV4	Burkholderia_phage	27.8	7.9e-31
WP_001306955.1|1299702_1300254_+	Raf kinase inhibitor-like protein YbcL	NA	NA	NA	NA	NA
1300207:1300220	attR	AATAAAATCGCAAC	NA	NA	NA	NA
WP_000881075.1|1300263_1301061_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_001303586.1|1301177_1301279_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001054340.1|1301275_1301731_+	DNA base-flipping protein YbcN	NA	I6PD71	Cronobacter_phage	66.9	4.1e-60
WP_000224907.1|1301730_1301901_+	hypothetical protein	NA	K7P7K0	Enterobacteria_phage	67.9	5.3e-13
WP_000774479.1|1301893_1302184_+	DUF1364 domain-containing protein	NA	K7PGZ6	Enterobacteria_phage	95.8	2.3e-48
WP_001099655.1|1302180_1302543_+	RusA family crossover junction endodeoxyribonuclease	NA	K7PM48	Enterobacteria_phage	97.4	7.3e-60
WP_000971071.1|1302539_1302680_+	YlcG family protein	NA	K7PHH3	Enterobacteria_phage	69.8	2.5e-08
WP_001204780.1|1302765_1303149_+	antitermination protein QuuD	NA	A0A088CD47	Shigella_phage	84.2	4.0e-56
WP_000839596.1|1305786_1306002_+|lysis	phage lysis protein EssD	lysis	A5LH82	Enterobacteria_phage	100.0	9.0e-34
WP_001135280.1|1306001_1306499_+	lysozyme RrrD	NA	M1FJA0	Enterobacteria_phage	97.6	1.1e-90
WP_001228695.1|1306715_1306898_+|lysis	prophage lysis lipoprotein RzoD	lysis	K7PHU6	Enterobacteria_phage	98.3	2.9e-17
WP_000738423.1|1306988_1307282_-	increased serum survival lipoprotein Iss	NA	K7PL54	Enterobacteria_phage	91.8	2.0e-44
WP_001415975.1|1307642_1307837_-	YlcI/YnfO family protein	NA	A0A0K2FIR8	Escherichia_phage	96.9	4.3e-27
>prophage 3
NZ_CP014269	Escherichia coli B strain C3029 chromosome, complete genome	4569185	1508695	1596759	4569185	capsid,lysis,protease,portal,integrase,head,tail,terminase	Enterobacteria_phage(74.58%)	120	1552384:1552401	1600684:1600701
WP_000533640.1|1508695_1509766_-|integrase	tyrosine-type recombinase/integrase	integrase	K7PMH8	Enterobacteria_phage	100.0	3.9e-202
WP_002414258.1|1509743_1509962_-	excisionase	NA	C6ZCU6	Enterobacteria_phage	100.0	1.3e-35
WP_000545733.1|1510001_1510169_-	hypothetical protein	NA	A0A0K2FJ46	Enterobacteria_phage	100.0	1.3e-27
WP_000026224.1|1510257_1510539_-	hypothetical protein	NA	A0A0K2FIU9	Enterobacteria_phage	100.0	2.8e-51
WP_001289873.1|1510730_1511279_-	ead/Ea22-like family protein	NA	A0A0K2FJF6	Enterobacteria_phage	100.0	2.2e-100
WP_000763367.1|1511275_1511497_-	TraR/DksA family transcriptional regulator	NA	A0A0K2FI84	Escherichia_phage	100.0	2.9e-35
WP_015979260.1|1511888_1512080_-	DUF1382 family protein	NA	Q38267	Escherichia_phage	100.0	2.1e-26
WP_000149542.1|1512052_1512235_-	DUF1317 domain-containing protein	NA	A0A1U8QQC1	Enterobacteria_phage	100.0	1.6e-28
WP_000186853.1|1512231_1512912_-	YqaJ viral recombinase family protein	NA	A0A0K2FIU4	Escherichia_phage	100.0	2.7e-132
WP_000100844.1|1512908_1513694_-	phage recombination protein Bet	NA	A0A0K2FJF1	Enterobacteria_phage	100.0	1.4e-148
WP_000995451.1|1513699_1513996_-	host-nuclease inhibitor protein Gam	NA	C6ZCV5	Enterobacteria_phage	100.0	2.1e-49
WP_000372937.1|1514070_1514214_-	host cell division inhibitory peptide Kil	NA	A0A0N7C2U2	Escherichia_phage	100.0	1.2e-18
WP_001198861.1|1514182_1514347_-|protease	protease FtsH-inhibitory lysogeny factor CIII	protease	Q776Q5	Enterobacteria_phage	100.0	1.1e-26
WP_000065374.1|1514419_1514788_-	DUF2528 family protein	NA	M1FPD2	Enterobacteria_phage	100.0	2.0e-65
WP_000213975.1|1514970_1515171_-	antirestriction Ral family protein	NA	A0A0K2FJE6	Enterobacteria_phage	100.0	1.4e-33
WP_000281856.1|1515437_1515920_+	superinfection exclusion B family protein	NA	A4KWR7	Enterobacteria_phage	100.0	1.1e-87
WP_001564525.1|1515920_1516244_-	antitermination protein	NA	A0A0K2FII1	Escherichia_phage	100.0	4.5e-53
WP_000788349.1|1517159_1517999_-	protein rexA	NA	M1FPD4	Enterobacteria_phage	100.0	3.7e-155
WP_000104864.1|1518111_1518825_-	LexA family transcriptional regulator	NA	A4KWV9	Enterobacteria_phage	98.3	1.3e-129
WP_000437875.1|1518925_1519126_+	hypothetical protein	NA	A4KWT7	Enterobacteria_phage	100.0	4.3e-30
WP_000251069.1|1519244_1519538_+	lambda phage CII family protein	NA	A2SY75	Escherichia_phage	100.0	3.7e-46
WP_000185505.1|1519570_1520470_+	replication protein	NA	A0A0K2FJ31	Enterobacteria_phage	100.0	3.8e-174
WP_000788910.1|1520466_1521168_+	hypothetical protein	NA	A0A0K2FIT1	Enterobacteria_phage	100.0	7.6e-130
WP_000145933.1|1521164_1521455_+	protein ren	NA	K7P7K7	Enterobacteria_phage	100.0	9.6e-47
WP_000736903.1|1521528_1521969_+	recombination protein NinB	NA	A0A220NRM1	Escherichia_phage	100.0	7.0e-81
WP_000611491.1|1521965_1522838_+	phosphoadenosine phosphosulfate reductase family protein	NA	A0A0K2FIH3	Escherichia_phage	100.0	9.3e-178
WP_000984218.1|1522834_1523008_+	hypothetical protein	NA	I6S1V2	Salmonella_phage	100.0	5.8e-31
WP_000113775.1|1522974_1523157_+	NinE family protein	NA	C6ZR57	Salmonella_phage	96.7	8.2e-28
WP_000566997.1|1523153_1523324_+	protein ninF	NA	Q716C4	Shigella_phage	100.0	3.2e-26
WP_001108044.1|1523316_1523928_+	recombination protein NinG	NA	K7P8B1	Enterobacteria_phage	100.0	3.5e-99
WP_002901791.1|1523924_1524131_+	phage NinH family protein	NA	Q716C0	Shigella_phage	98.5	2.8e-32
WP_001271136.1|1524108_1524774_+	serine/threonine protein phosphatase	NA	K7P7V3	Enterobacteria_phage	100.0	1.7e-131
WP_001235459.1|1524770_1525394_+	antitermination protein	NA	K7P6X1	Enterobacteria_phage	100.0	3.0e-114
WP_000229403.1|1526377_1526854_+	glycoside hydrolase family protein	NA	A0A0K2FIS2	Enterobacteria_phage	100.0	4.4e-89
WP_012738274.1|1527070_1527253_+|lysis	prophage lysis lipoprotein RzoD	lysis	K7PHU6	Enterobacteria_phage	100.0	1.7e-17
WP_000738492.1|1527343_1527637_-	serum resistance lipoprotein Bor	NA	K7PL54	Enterobacteria_phage	100.0	4.0e-48
WP_012775990.1|1527926_1528337_-	DUF1398 domain-containing protein	NA	C6ZCX4	Enterobacteria_phage	100.0	2.5e-72
WP_001031427.1|1528622_1528829_+	hypothetical protein	NA	A0A0K2FJ18	Enterobacteria_phage	100.0	5.8e-30
WP_001421937.1|1528993_1529188_-	YlcI/YnfO family protein	NA	A0A0K2FIR8	Escherichia_phage	100.0	8.7e-28
WP_000453580.1|1529576_1530122_+	DNA-packaging protein	NA	A0A0K2FIG2	Enterobacteria_phage	100.0	2.8e-95
WP_001027292.1|1530096_1532022_+|terminase	phage terminase large subunit family protein	terminase	A0A0K2FJ14	Enterobacteria_phage	100.0	0.0e+00
WP_000198149.1|1532018_1532225_+	gpW family protein	NA	A0A2R9YJL2	Escherichia_phage	100.0	5.8e-30
WP_001359455.1|1532221_1533823_+|portal	phage portal protein	portal	A0A0K2FJC0	Enterobacteria_phage	100.0	5.9e-312
WP_000123343.1|1533803_1535123_+	S49 family peptidase	NA	A0A0K2FI53	Enterobacteria_phage	100.0	7.9e-237
WP_001297109.1|1535132_1535465_+|head	head decoration protein	head	C6ZCY1	Enterobacteria_phage	100.0	2.2e-55
WP_000063280.1|1535520_1536546_+|capsid	major capsid protein	capsid	C6ZCY2	Enterobacteria_phage	100.0	7.1e-193
WP_000158919.1|1536587_1536986_+	DNA-packaging protein FI	NA	A0A0K2FIR1	Enterobacteria_phage	100.0	3.1e-64
WP_000752979.1|1536997_1537351_+|head,tail	head-tail joining protein	head,tail	A0A0K2FJB7	Enterobacteria_phage	100.0	2.0e-62
WP_000975070.1|1537362_1537941_+|tail	phage tail protein	tail	A0A2R9YJK4	Escherichia_phage	100.0	2.7e-80
WP_000683105.1|1537937_1538333_+|tail	tail protein	tail	A0A0K2FIF4	Enterobacteria_phage	100.0	1.0e-70
WP_001349920.1|1538340_1539081_+|tail	phage tail protein	tail	A0A0K2FJ05	Enterobacteria_phage	100.0	7.8e-133
WP_000479153.1|1539096_1539519_+|tail	phage minor tail protein G	tail	A0A0K2FIQ8	Enterobacteria_phage	100.0	6.7e-73
WP_000459457.1|1539500_1539935_+|tail	phage tail assembly protein T	tail	A0A0K2FJB3	Enterobacteria_phage	100.0	6.9e-65
WP_000840207.1|1539927_1542489_+|tail	phage tail tape measure protein	tail	A0A0K2FI43	Enterobacteria_phage	100.0	0.0e+00
WP_000847379.1|1542485_1542815_+|tail	phage tail protein	tail	A0A0K2FIE9	Enterobacteria_phage	100.0	9.6e-59
WP_000194780.1|1543519_1544263_+|tail	phage tail protein	tail	K7PLW1	Enterobacteria_phage	96.8	2.5e-147
WP_000090889.1|1544199_1544832_+|tail	tail assembly protein	tail	C6ZCZ4	Enterobacteria_phage	100.0	5.9e-97
WP_000515495.1|1544892_1548291_+	host specificity protein J	NA	C6ZCZ5	Enterobacteria_phage	100.0	0.0e+00
WP_001206316.1|1550653_1551445_-	ANT(3'')-Ia family aminoglycoside nucleotidyltransferase AadA1	NA	NA	NA	NA	NA
WP_071888726.1|1551745_1552072_-	serine hydrolase	NA	Q38212	Enterobacteria_phage	99.1	5.4e-54
1552384:1552401	attL	ATTTGATGCCTGGCAGTT	NA	NA	NA	NA
WP_061057650.1|1552641_1553328_-	bifunctional protein-disulfide isomerase/oxidoreductase DsbC	NA	NA	NA	NA	NA
WP_000805902.1|1553616_1554699_-	DNA-binding transcriptional repressor LacI	NA	C6ZCU4	Enterobacteria_phage	100.0	7.5e-193
WP_000533640.1|1557162_1558233_-|integrase	tyrosine-type recombinase/integrase	integrase	K7PMH8	Enterobacteria_phage	100.0	3.9e-202
WP_002414258.1|1558210_1558429_-	excisionase	NA	C6ZCU6	Enterobacteria_phage	100.0	1.3e-35
WP_000545733.1|1558468_1558636_-	hypothetical protein	NA	A0A0K2FJ46	Enterobacteria_phage	100.0	1.3e-27
WP_000026224.1|1558724_1559006_-	hypothetical protein	NA	A0A0K2FIU9	Enterobacteria_phage	100.0	2.8e-51
WP_001289873.1|1559197_1559746_-	ead/Ea22-like family protein	NA	A0A0K2FJF6	Enterobacteria_phage	100.0	2.2e-100
WP_000763367.1|1559742_1559964_-	TraR/DksA family transcriptional regulator	NA	A0A0K2FI84	Escherichia_phage	100.0	2.9e-35
WP_015979260.1|1560355_1560547_-	DUF1382 family protein	NA	Q38267	Escherichia_phage	100.0	2.1e-26
WP_000149542.1|1560519_1560702_-	DUF1317 domain-containing protein	NA	A0A1U8QQC1	Enterobacteria_phage	100.0	1.6e-28
WP_000186853.1|1560698_1561379_-	YqaJ viral recombinase family protein	NA	A0A0K2FIU4	Escherichia_phage	100.0	2.7e-132
WP_000100844.1|1561375_1562161_-	phage recombination protein Bet	NA	A0A0K2FJF1	Enterobacteria_phage	100.0	1.4e-148
WP_000995451.1|1562166_1562463_-	host-nuclease inhibitor protein Gam	NA	C6ZCV5	Enterobacteria_phage	100.0	2.1e-49
WP_000372937.1|1562537_1562681_-	host cell division inhibitory peptide Kil	NA	A0A0N7C2U2	Escherichia_phage	100.0	1.2e-18
WP_001198861.1|1562649_1562814_-|protease	protease FtsH-inhibitory lysogeny factor CIII	protease	Q776Q5	Enterobacteria_phage	100.0	1.1e-26
WP_000065374.1|1562886_1563255_-	DUF2528 family protein	NA	M1FPD2	Enterobacteria_phage	100.0	2.0e-65
WP_000213975.1|1563437_1563638_-	antirestriction Ral family protein	NA	A0A0K2FJE6	Enterobacteria_phage	100.0	1.4e-33
WP_000281856.1|1563904_1564387_+	superinfection exclusion B family protein	NA	A4KWR7	Enterobacteria_phage	100.0	1.1e-87
WP_001564525.1|1564387_1564711_-	antitermination protein	NA	A0A0K2FII1	Escherichia_phage	100.0	4.5e-53
WP_001245922.1|1565175_1565610_-	protein rexB	NA	M1FPN8	Enterobacteria_phage	100.0	1.9e-70
WP_000104864.1|1566579_1567293_-	LexA family transcriptional regulator	NA	A4KWV9	Enterobacteria_phage	98.3	1.3e-129
WP_000437875.1|1567393_1567594_+	hypothetical protein	NA	A4KWT7	Enterobacteria_phage	100.0	4.3e-30
WP_000251069.1|1567712_1568006_+	lambda phage CII family protein	NA	A2SY75	Escherichia_phage	100.0	3.7e-46
WP_000185505.1|1568038_1568938_+	replication protein	NA	A0A0K2FJ31	Enterobacteria_phage	100.0	3.8e-174
WP_000788910.1|1568934_1569636_+	hypothetical protein	NA	A0A0K2FIT1	Enterobacteria_phage	100.0	7.6e-130
WP_000145933.1|1569632_1569923_+	protein ren	NA	K7P7K7	Enterobacteria_phage	100.0	9.6e-47
WP_000736903.1|1569996_1570437_+	recombination protein NinB	NA	A0A220NRM1	Escherichia_phage	100.0	7.0e-81
WP_000611491.1|1570433_1571306_+	phosphoadenosine phosphosulfate reductase family protein	NA	A0A0K2FIH3	Escherichia_phage	100.0	9.3e-178
WP_000984218.1|1571302_1571476_+	hypothetical protein	NA	I6S1V2	Salmonella_phage	100.0	5.8e-31
WP_000113775.1|1571442_1571625_+	NinE family protein	NA	C6ZR57	Salmonella_phage	96.7	8.2e-28
WP_000566997.1|1571621_1571792_+	protein ninF	NA	Q716C4	Shigella_phage	100.0	3.2e-26
WP_001108044.1|1571784_1572396_+	recombination protein NinG	NA	K7P8B1	Enterobacteria_phage	100.0	3.5e-99
WP_002901791.1|1572392_1572599_+	phage NinH family protein	NA	Q716C0	Shigella_phage	98.5	2.8e-32
WP_001271136.1|1572576_1573242_+	serine/threonine protein phosphatase	NA	K7P7V3	Enterobacteria_phage	100.0	1.7e-131
WP_001235459.1|1573238_1573862_+	antitermination protein	NA	K7P6X1	Enterobacteria_phage	100.0	3.0e-114
WP_000229403.1|1574845_1575322_+	glycoside hydrolase family protein	NA	A0A0K2FIS2	Enterobacteria_phage	100.0	4.4e-89
WP_012738274.1|1575538_1575721_+|lysis	prophage lysis lipoprotein RzoD	lysis	K7PHU6	Enterobacteria_phage	100.0	1.7e-17
WP_000738492.1|1575811_1576105_-	serum resistance lipoprotein Bor	NA	K7PL54	Enterobacteria_phage	100.0	4.0e-48
WP_012775990.1|1576394_1576805_-	DUF1398 domain-containing protein	NA	C6ZCX4	Enterobacteria_phage	100.0	2.5e-72
WP_001031427.1|1577090_1577297_+	hypothetical protein	NA	A0A0K2FJ18	Enterobacteria_phage	100.0	5.8e-30
WP_001421937.1|1577461_1577656_-	YlcI/YnfO family protein	NA	A0A0K2FIR8	Escherichia_phage	100.0	8.7e-28
WP_000453580.1|1578044_1578590_+	DNA-packaging protein	NA	A0A0K2FIG2	Enterobacteria_phage	100.0	2.8e-95
WP_001027292.1|1578564_1580490_+|terminase	phage terminase large subunit family protein	terminase	A0A0K2FJ14	Enterobacteria_phage	100.0	0.0e+00
WP_000198149.1|1580486_1580693_+	gpW family protein	NA	A0A2R9YJL2	Escherichia_phage	100.0	5.8e-30
WP_001359455.1|1580689_1582291_+|portal	phage portal protein	portal	A0A0K2FJC0	Enterobacteria_phage	100.0	5.9e-312
WP_000123343.1|1582271_1583591_+	S49 family peptidase	NA	A0A0K2FI53	Enterobacteria_phage	100.0	7.9e-237
WP_001297109.1|1583600_1583933_+|head	head decoration protein	head	C6ZCY1	Enterobacteria_phage	100.0	2.2e-55
WP_000063280.1|1583988_1585014_+|capsid	major capsid protein	capsid	C6ZCY2	Enterobacteria_phage	100.0	7.1e-193
WP_000158919.1|1585055_1585454_+	DNA-packaging protein FI	NA	A0A0K2FIR1	Enterobacteria_phage	100.0	3.1e-64
WP_000752979.1|1585465_1585819_+|head,tail	head-tail joining protein	head,tail	A0A0K2FJB7	Enterobacteria_phage	100.0	2.0e-62
WP_000975070.1|1585830_1586409_+|tail	phage tail protein	tail	A0A2R9YJK4	Escherichia_phage	100.0	2.7e-80
WP_000683105.1|1586405_1586801_+|tail	tail protein	tail	A0A0K2FIF4	Enterobacteria_phage	100.0	1.0e-70
WP_001349920.1|1586808_1587549_+|tail	phage tail protein	tail	A0A0K2FJ05	Enterobacteria_phage	100.0	7.8e-133
WP_000479153.1|1587564_1587987_+|tail	phage minor tail protein G	tail	A0A0K2FIQ8	Enterobacteria_phage	100.0	6.7e-73
WP_000459457.1|1587968_1588403_+|tail	phage tail assembly protein T	tail	A0A0K2FJB3	Enterobacteria_phage	100.0	6.9e-65
WP_000840207.1|1588395_1590957_+|tail	phage tail tape measure protein	tail	A0A0K2FI43	Enterobacteria_phage	100.0	0.0e+00
WP_000847379.1|1590953_1591283_+|tail	phage tail protein	tail	A0A0K2FIE9	Enterobacteria_phage	100.0	9.6e-59
WP_000194780.1|1591987_1592731_+|tail	phage tail protein	tail	K7PLW1	Enterobacteria_phage	96.8	2.5e-147
WP_000090889.1|1592667_1593300_+|tail	tail assembly protein	tail	C6ZCZ4	Enterobacteria_phage	100.0	5.9e-97
WP_000515495.1|1593360_1596759_+	host specificity protein J	NA	C6ZCZ5	Enterobacteria_phage	100.0	0.0e+00
1600684:1600701	attR	ATTTGATGCCTGGCAGTT	NA	NA	NA	NA
>prophage 4
NZ_CP014269	Escherichia coli B strain C3029 chromosome, complete genome	4569185	1686720	1709679	4569185	capsid,lysis,portal,integrase,plate,tail,terminase	Salmonella_phage(63.64%)	29	1682986:1683000	1690353:1690367
1682986:1683000	attL	GCTGTCGCTGATGGT	NA	NA	NA	NA
WP_000290930.1|1686720_1687737_-|integrase	tyrosine-type recombinase/integrase	integrase	A0A218M4I3	Erwinia_phage	56.7	3.2e-105
WP_001321204.1|1687923_1688115_-	hypothetical protein	NA	A0A0R6PIH8	Moraxella_phage	68.2	4.0e-09
WP_001047321.1|1688130_1688700_-	phage repressor protein CI	NA	A0A1S6KZZ7	Salmonella_phage	43.4	3.8e-39
WP_001247707.1|1688825_1689047_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000460887.1|1689079_1690525_+	phage regulatory CII family protein	NA	E5G6L9	Salmonella_phage	97.0	4.5e-209
1690353:1690367	attR	ACCATCAGCGACAGC	NA	NA	NA	NA
WP_001154431.1|1690677_1690866_+	hypothetical protein	NA	E5G6M0	Salmonella_phage	96.8	1.6e-26
WP_001217575.1|1690876_1691110_+	DinI family protein	NA	E5G6M1	Salmonella_phage	100.0	4.7e-36
WP_001059831.1|1691302_1691638_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001034589.1|1692110_1693034_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001320043.1|1693196_1694159_+	RNA-directed DNA polymerase	NA	NA	NA	NA	NA
WP_000520360.1|1694176_1695202_-|portal	phage portal protein	portal	A0A1S6KZW5	Salmonella_phage	86.7	7.6e-171
WP_001098413.1|1695201_1696968_-|terminase	terminase ATPase subunit family protein	terminase	A0A1S6KZW3	Salmonella_phage	99.1	0.0e+00
WP_000216259.1|1697110_1697863_+|capsid	GPO family capsid scaffolding protein	capsid	A0A1S6KZW9	Salmonella_phage	94.7	3.1e-113
WP_000196203.1|1697999_1698428_+|lysis	LysB family phage lysis regulatory protein	lysis	E5G6N2	Salmonella_phage	88.7	8.1e-58
WP_001039932.1|1698523_1698955_+|tail	phage tail protein	tail	E5G6N3	Salmonella_phage	93.0	3.8e-71
WP_000829156.1|1698947_1699394_+	phage virion morphogenesis protein	NA	A0A1S6L001	Salmonella_phage	83.7	7.6e-59
WP_000115390.1|1699335_1700142_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000993743.1|1700245_1700824_+|plate	phage baseplate assembly protein V	plate	A0A1S6KZX7	Salmonella_phage	85.9	3.6e-93
WP_000177591.1|1700820_1701180_+	GPW/gp25 family protein	NA	A0A1S6KZZ4	Salmonella_phage	85.7	8.0e-51
WP_000268294.1|1701166_1702075_+|plate	baseplate assembly protein	plate	A0A1S6KZY6	Salmonella_phage	91.1	4.1e-144
WP_001086815.1|1702067_1702673_+|tail	phage tail protein I	tail	A0A1S6L000	Salmonella_phage	93.0	2.3e-111
WP_000104800.1|1702669_1704292_+|tail	phage tail protein	tail	M1TAS6	Escherichia_phage	78.5	6.2e-151
WP_000280166.1|1704293_1704731_+|tail	tail assembly chaperone	tail	A0A0F7LDZ0	Escherichia_phage	75.0	1.7e-55
WP_000368077.1|1704702_1705305_-|tail	tail fiber assembly protein	tail	M1SV83	Escherichia_phage	89.5	2.3e-98
WP_012767713.1|1705304_1705847_-|tail	tail fiber protein	tail	A0A0F7LCR3	Escherichia_phage	62.5	1.9e-56
WP_000972391.1|1706605_1706824_+	ogr/Delta-like zinc finger family protein	NA	Q53ZE7	Salmonella_virus	69.0	7.5e-20
WP_001024876.1|1707059_1708745_-	aspartate:alanine antiporter	NA	NA	NA	NA	NA
WP_000681108.1|1709014_1709392_+	inner membrane protein YbjM	NA	NA	NA	NA	NA
WP_001195240.1|1709421_1709679_-	glutaredoxin 1	NA	A0A2I7SAE2	Vibrio_phage	61.9	8.6e-23
>prophage 5
NZ_CP014269	Escherichia coli B strain C3029 chromosome, complete genome	4569185	2206832	2227554	4569185	integrase,tRNA,lysis	Escherichia_phage(34.78%)	29	2207658:2207672	2229829:2229843
WP_001301114.1|2206832_2208065_-	diguanylate cyclase DgcM	NA	A0A127AWB9	Bacillus_phage	35.0	3.1e-17
2207658:2207672	attL	CAGAAAAAAGCGCGC	NA	NA	NA	NA
WP_000387388.1|2208319_2209303_+	zinc transporter ZntB	NA	NA	NA	NA	NA
WP_000123737.1|2209780_2211154_+	ATP-dependent RNA helicase DbpA	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	33.1	6.6e-53
WP_001157407.1|2211282_2212218_-|tRNA	tRNA 2-thiocytidine(32) synthetase TtcA	tRNA	A0A0U2S5Z2	Escherichia_phage	98.8	5.9e-146
WP_000040858.1|2212269_2213505_-|integrase	site-specific integrase	integrase	A0A0U2JGI6	Escherichia_phage	98.5	1.6e-239
WP_000079604.1|2213506_2213722_-	excisionase XisR	NA	A0A0U2RY08	Escherichia_phage	100.0	1.8e-37
WP_000276809.1|2213800_2214010_-	double-strand break reduction protein RcbA	NA	A0A0U2QL97	Escherichia_phage	98.4	6.1e-27
WP_001317028.1|2214002_2214197_-	type I toxin-antitoxin system endodeoxyribonuclease toxin RalR	NA	A0A0U2QQP4	Escherichia_phage	96.9	5.8e-32
WP_000166319.1|2214253_2215063_-	recombination protein RecT	NA	A0A1P8DTF2	Proteus_phage	71.5	8.8e-106
WP_000632297.1|2216256_2216532_-	protein RacC	NA	A0A0U2QW85	Escherichia_phage	96.7	1.4e-42
WP_001352098.1|2216606_2216777_-	conserved protein, Rac prophage	NA	A0A0U2SHB5	Escherichia_phage	71.4	3.6e-17
WP_000560223.1|2216776_2216998_-	killing protein KilR	NA	A0A0U2RTC4	Escherichia_phage	98.6	2.0e-36
WP_001312793.1|2217439_2217928_+	superinfection exclusion protein B	NA	NA	NA	NA	NA
WP_001169151.1|2217924_2218080_-	YdaF family protein	NA	M4QQ57	Salicola_phage	55.3	6.1e-08
WP_012775985.1|2218223_2218436_+|lysis	phage lysis protein EssD	lysis	A5LH82	Enterobacteria_phage	96.9	3.0e-29
WP_000193293.1|2218440_2218785_+	YdfR family protein	NA	K7PGU6	Enterobacteria_phage	94.0	1.4e-36
WP_000370546.1|2218750_2219023_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000992105.1|2219128_2219662_+	lysozyme	NA	K7PLY1	Enterobacteria_phage	96.0	4.8e-100
WP_001228696.1|2219878_2220064_+|lysis	prophage lysis lipoprotein RzoD	lysis	K7PHU6	Enterobacteria_phage	98.2	2.8e-15
WP_001097897.1|2220260_2221718_+	Trk system potassium transporter TrkG	NA	NA	NA	NA	NA
WP_012775984.1|2221855_2222251_+	ParB N-terminal domain-containing protein	NA	A0A0R6PD10	Moraxella_phage	58.7	3.1e-19
WP_000654171.1|2222932_2223211_+	hypothetical protein	NA	A0A0E3JSQ1	Enterobacteria_phage	55.4	2.9e-24
WP_000355360.1|2223223_2223517_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000078178.1|2223744_2224335_-	recombinase family protein	NA	A0A0A7NPV4	Enterobacteria_phage	38.8	1.6e-24
WP_000836768.1|2224651_2224885_-	cold shock protein YdfK	NA	A0A192Y6D5	Salmonella_phage	88.3	1.1e-32
WP_120795384.1|2224953_2225067_-	hypothetical protein	NA	A0A1C9IHU6	Salmonella_phage	80.6	8.4e-07
WP_001157925.1|2225406_2225580_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001300461.1|2225845_2226280_-	universal stress protein UspF	NA	A0A1W6JNV4	Morganella_phage	52.8	1.8e-28
WP_000837924.1|2226420_2227554_-	porin OmpN	NA	Q1MVN1	Enterobacteria_phage	58.8	8.3e-118
2229829:2229843	attR	GCGCGCTTTTTTCTG	NA	NA	NA	NA
>prophage 6
NZ_CP014269	Escherichia coli B strain C3029 chromosome, complete genome	4569185	2393850	2409473	4569185	transposase	Enterobacteria_phage(18.75%)	22	NA	NA
WP_000527826.1|2393850_2395311_-	mannitol dehydrogenase family protein	NA	G8DCZ3	Micromonas_pusilla_virus	29.3	2.8e-41
WP_120795384.1|2397286_2397400_+	hypothetical protein	NA	A0A1C9IHU6	Salmonella_phage	80.6	8.4e-07
WP_000836768.1|2397468_2397702_+	cold shock protein YdfK	NA	A0A192Y6D5	Salmonella_phage	88.3	1.1e-32
WP_000086527.1|2398017_2398608_+	recombinase family protein	NA	A0A0A7NPV4	Enterobacteria_phage	38.8	1.6e-24
WP_000355603.1|2398835_2399129_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000235975.1|2399139_2399844_-	hypothetical protein	NA	A0A1X7QGH6	Escherichia_phage	62.3	5.4e-59
WP_001205170.1|2399853_2400135_-	hypothetical protein	NA	A0A1X7QHA1	Escherichia_phage	47.8	4.5e-17
WP_000879385.1|2400134_2401388_-	hypothetical protein	NA	A0A0E3M194	Enterobacteria_phage	54.3	3.7e-127
WP_000896277.1|2401707_2401869_+	hypothetical protein	NA	NA	NA	NA	NA
WP_164979075.1|2401896_2402073_+	hypothetical protein	NA	NA	NA	NA	NA
WP_085947598.1|2402096_2403258_+|transposase	IS3-like element IS3 family transposase	transposase	A0A0P0I4A4	Acinetobacter_phage	40.6	4.0e-51
WP_000780584.1|2403628_2404153_+	lipocalin family protein	NA	A0A1W6JNX6	Morganella_phage	52.9	1.0e-46
WP_001204787.1|2404308_2404686_-	antitermination protein	NA	Q777W5	Enterobacteria_phage	82.5	1.8e-53
WP_001265279.1|2404703_2405354_-	DUF968 domain-containing protein	NA	Q8SBE5	Shigella_phage	70.3	2.6e-68
WP_012775982.1|2405355_2405634_-	hypothetical protein	NA	I6PCV7	Cronobacter_phage	48.4	5.7e-12
WP_000981003.1|2405700_2405952_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000887491.1|2406168_2406381_-	type I toxin-antitoxin system Hok family toxin	NA	A0A0U2QV81	Escherichia_phage	97.1	1.7e-29
WP_000054497.1|2406985_2407951_-	hypothetical protein	NA	U5P0A0	Shigella_phage	60.2	5.0e-55
WP_000705360.1|2407931_2408453_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000921596.1|2408436_2408664_-	transcriptional regulator	NA	NA	NA	NA	NA
WP_000381212.1|2408744_2409152_+	helix-turn-helix domain-containing protein	NA	I6PD69	Cronobacter_phage	51.9	7.2e-32
WP_000379591.1|2409320_2409473_+	DUF1391 family protein	NA	M4QQ57	Salicola_phage	53.2	6.6e-07
>prophage 7
NZ_CP014269	Escherichia coli B strain C3029 chromosome, complete genome	4569185	2822510	2831367	4569185		Enterobacteria_phage(42.86%)	8	NA	NA
WP_000998544.1|2822510_2823623_-	dTDP-4-amino-4,6-dideoxy-D-glucose aminotransferase VioA	NA	A0A0P0YLZ6	Yellowstone_lake_phycodnavirus	25.7	1.3e-14
WP_001060532.1|2823632_2825057_-	O7 family O-antigen flippase	NA	NA	NA	NA	NA
WP_001100801.1|2825060_2825606_-	dTDP-4-dehydrorhamnose 3,5-epimerase	NA	I7HJC4	Enterobacteria_phage	53.9	1.6e-47
WP_000857508.1|2825610_2826489_-	glucose-1-phosphate thymidylyltransferase RfbA	NA	I7I009	Enterobacteria_phage	64.1	8.7e-107
WP_001023616.1|2826547_2827447_-	dTDP-4-dehydrorhamnose reductase	NA	A0A291LA50	Escherichia_phage	34.5	8.2e-28
WP_000699450.1|2827446_2828532_-	dTDP-glucose 4,6-dehydratase	NA	I7HTA3	Enterobacteria_phage	53.9	3.9e-101
WP_000183060.1|2828904_2829798_-	UTP--glucose-1-phosphate uridylyltransferase GalF	NA	A0A127AW70	Bacillus_phage	42.0	1.0e-46
WP_001115981.1|2829972_2831367_-	colanic acid biosynthesis protein WcaM	NA	A0A291LBB9	Klebsiella_phage	33.5	1.3e-19
>prophage 8
NZ_CP014269	Escherichia coli B strain C3029 chromosome, complete genome	4569185	2923551	2932993	4569185		Enterobacteria_phage(85.71%)	10	NA	NA
WP_001300968.1|2923551_2924688_+	VWA domain-containing protein	NA	Q9EYF7	Enterobacteria_phage	97.4	3.2e-162
WP_001300967.1|2924684_2926685_+	SWIM zinc finger family protein	NA	Q9EYF6	Enterobacteria_phage	96.6	0.0e+00
WP_001296231.1|2926809_2927271_+	YehR family lipoprotein	NA	Q9EYF5	Enterobacteria_phage	99.3	3.2e-76
WP_001295430.1|2927311_2927782_-	DUF1456 family protein	NA	Q9EYF4	Enterobacteria_phage	100.0	1.8e-82
WP_000598641.1|2927828_2928548_-	two-component system response regulator BtsR	NA	NA	NA	NA	NA
WP_001295431.1|2928544_2930230_-	two-component regulatory system sensor histidine kinase BtsS	NA	Q9EYF3	Enterobacteria_phage	99.6	2.5e-304
WP_001240403.1|2930451_2931183_+	HTH-type transcriptional regulator MlrA	NA	Q9EYF2	Enterobacteria_phage	99.5	9.7e-112
WP_001216966.1|2931242_2931350_+	protein YohO	NA	NA	NA	NA	NA
WP_000783120.1|2931330_2932062_-	glycine betaine ABC transporter permease YehW	NA	NA	NA	NA	NA
WP_000569344.1|2932066_2932993_-	glycine betaine ABC transporter ATP binding protein YehX	NA	G3M9Y6	Bacillus_virus	30.8	1.3e-23
>prophage 9
NZ_CP014269	Escherichia coli B strain C3029 chromosome, complete genome	4569185	3517782	3530965	4569185		Escherichia_phage(50.0%)	12	NA	NA
WP_001272928.1|3517782_3520344_+	DNA mismatch repair protein MutS	NA	E3T5Q7	Cafeteria_roenbergensis_virus	20.6	3.0e-30
WP_001141307.1|3520449_3521106_+	protein-serine/threonine phosphatase	NA	A0A077SLQ6	Escherichia_phage	46.6	8.6e-51
WP_001295181.1|3521156_3521924_-	DeoR/GlpR transcriptional regulator	NA	A0A077SK06	Escherichia_phage	56.7	2.5e-70
WP_000847971.1|3522119_3523028_+	NAD(P)-dependent oxidoreductase	NA	A0A077SLF7	Escherichia_phage	76.5	5.1e-118
WP_000590371.1|3523024_3524287_+	four-carbon acid sugar kinase family protein	NA	A0A077SLJ7	Escherichia_phage	61.4	4.9e-135
WP_001278994.1|3524283_3524922_+	aldolase	NA	A0A077SK32	Escherichia_phage	75.0	1.4e-82
WP_001136925.1|3524926_3525703_+	HPr family phosphocarrier protein	NA	NA	NA	NA	NA
WP_000104459.1|3525791_3527156_+	GntP family transporter	NA	NA	NA	NA	NA
WP_000081550.1|3527249_3528242_-	RNA polymerase sigma factor RpoS	NA	G8CLC7	Synechococcus_phage	37.6	6.1e-32
WP_001272590.1|3528304_3529444_-	murein hydrolase activator NlpD	NA	D7RWE0	Brochothrix_phage	35.6	1.7e-06
WP_000254708.1|3529583_3530210_-	protein-L-isoaspartate O-methyltransferase	NA	A0A1B1IU40	uncultured_Mediterranean_phage	49.7	5.7e-36
WP_001295182.1|3530203_3530965_-	5'/3'-nucleotidase SurE	NA	A0A1B1ITZ2	uncultured_Mediterranean_phage	48.0	3.4e-59
