assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_001558855.2_ASM155885v2	NZ_CP014024	Providencia stuartii strain FDAARGOS_145 chromosome, complete genome	1	16433-16700	1,1	PILER-CR,CRT	no	csa3	csa3,DEDDh,cas3,DinG,cas6f,cas7f,cas5f,cas8f,cas3-cas2,cas1,WYL,cas14j	Type I-A	GTGTACTGCCGTATAGGCAGCTTAGAAA,GTGTACTGCCGTATAGGCAGCTTAGAAA	28,28	0	0	NA	NA	I-F:I-F	3,4	4	Orphan	csa3,DEDDh,cas3,DinG,cas6f,cas7f,cas5f,cas8f,cas3-cas2,cas1,WYL,cas14j	NA|381aa|up_8|NZ_CP014024.2_8300_9443_+,NA|39aa|up_0|NZ_CP014024.2_15935_16052_-,NA|116aa|down_0|NZ_CP014024.2_16853_17201_+,NA|107aa|down_1|NZ_CP014024.2_17201_17522_+,NA|143aa|down_3|NZ_CP014024.2_18891_19320_-,NA|191aa|down_4|NZ_CP014024.2_20241_20814_+,NA|139aa|down_7|NZ_CP014024.2_27849_28266_-	NA|871aa|up_9|NZ_CP014024.2_5662_8275_+	COG3188, FimD, P pilus assembly protein, porin PapC [Cell motility and secretion / Intracellular trafficking and secretion]	NA|381aa|up_8|NZ_CP014024.2_8300_9443_+	NA	NA|71aa|up_7|NZ_CP014024.2_9907_10120_-	PRK11507, PRK11507, ribosome-associated protein YbcJ	NA|286aa|up_6|NZ_CP014024.2_10137_10995_-	PRK10792, PRK10792, bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD	csa3|112aa|up_5|NZ_CP014024.2_11613_11949_+	PRK10141, PRK10141, DNA-binding transcriptional repressor ArsR; Provisional	NA|122aa|up_4|NZ_CP014024.2_11996_12362_+	pfam06953, ArsD, Arsenical resistance operon trans-acting repressor ArsD	NA|584aa|up_3|NZ_CP014024.2_12375_14127_+	TIGR04291, Arsenical_pump-driving_ATPase, arsenical pump-driving ATPase	NA|430aa|up_2|NZ_CP014024.2_14182_15472_+	PRK15445, PRK15445, arsenical efflux pump membrane protein ArsB	NA|142aa|up_1|NZ_CP014024.2_15482_15908_+	PRK10026, PRK10026, arsenate reductase (glutaredoxin)	NA|39aa|up_0|NZ_CP014024.2_15935_16052_-	NA	NA|116aa|down_0|NZ_CP014024.2_16853_17201_+	NA	NA|107aa|down_1|NZ_CP014024.2_17201_17522_+	NA	NA|308aa|down_2|NZ_CP014024.2_17799_18723_+	PRK08025, PRK08025, kdo(2)-lipid IV(A) palmitoleoyltransferase	NA|143aa|down_3|NZ_CP014024.2_18891_19320_-	NA	NA|191aa|down_4|NZ_CP014024.2_20241_20814_+	NA	NA|472aa|down_5|NZ_CP014024.2_21872_23288_+	COG0665, DadA, Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]	NA|477aa|down_6|NZ_CP014024.2_25631_27062_+	PRK09852, PRK09852, cryptic 6-phospho-beta-glucosidase; Provisional	NA|139aa|down_7|NZ_CP014024.2_27849_28266_-	NA	NA|366aa|down_8|NZ_CP014024.2_28501_29599_-	PRK10370, PRK10370, formate-dependent nitrite reductase complex subunit NrfG; Provisional	NA|627aa|down_9|NZ_CP014024.2_29591_31472_-	PRK10369, PRK10369, heme lyase subunit NrfE; Provisional
GCF_001558855.2_ASM155885v2	NZ_CP014024	Providencia stuartii strain FDAARGOS_145 chromosome, complete genome	2	1446871-1447080	2,1,2	PILER-CR,CRISPRCasFinder,CRT	no		csa3,DEDDh,cas3,DinG,cas6f,cas7f,cas5f,cas8f,cas3-cas2,cas1,WYL,cas14j	Orphan	ATAGTGTACTGCCGCATAGGCAGCTTAGAAA,TTTCTAAGCTGCCTATGCGGCAGTACAC,TTTCTAAGCTGCCTATGCGGCAGTACACTAT	31,28,31	0	0	NA	NA	I-F:I-F:I-F	3,3,3	3	Orphan	csa3,DEDDh,cas3,DinG,cas6f,cas7f,cas5f,cas8f,cas3-cas2,cas1,WYL,cas14j	NA|55aa|up_4|NZ_CP014024.2_1442751_1442916_+,NA|165aa|up_0|NZ_CP014024.2_1446215_1446710_+,NA|113aa|down_3|NZ_CP014024.2_1451682_1452021_+,NA|171aa|down_5|NZ_CP014024.2_1455914_1456427_-,NA|92aa|down_7|NZ_CP014024.2_1457901_1458177_-,NA|74aa|down_8|NZ_CP014024.2_1458248_1458470_+,NA|193aa|down_9|NZ_CP014024.2_1459363_1459942_-	NA|250aa|up_9|NZ_CP014024.2_1437534_1438284_-	pfam01298, TbpB_B_D, C-lobe and N-lobe beta barrels of Tf-binding protein B	NA|122aa|up_8|NZ_CP014024.2_1439644_1440010_+	COG3544, COG3544, Uncharacterized protein conserved in bacteria [Function unknown]	NA|158aa|up_7|NZ_CP014024.2_1440135_1440609_-	pfam11776, RcnB, Nickel/cobalt transporter regulator	NA|99aa|up_6|NZ_CP014024.2_1441388_1441685_-	COG1359, COG1359, Uncharacterized conserved protein [Function unknown]	NA|181aa|up_5|NZ_CP014024.2_1441872_1442415_+	cd16017, LptA, Lipooligosaccharide Phosphoethanolamine Transferase A (LptA) or Lipid A Phosphoethanolamine Transferase	NA|55aa|up_4|NZ_CP014024.2_1442751_1442916_+	NA	NA|216aa|up_3|NZ_CP014024.2_1443204_1443852_+	PRK13211, PRK13211, N-acetylglucosamine-binding protein GbpA	NA|76aa|up_2|NZ_CP014024.2_1444240_1444468_+	pfam13646, HEAT_2, HEAT repeats	NA|260aa|up_1|NZ_CP014024.2_1445041_1445821_-	CHL00071, tufA, elongation factor Tu	NA|165aa|up_0|NZ_CP014024.2_1446215_1446710_+	NA	NA|217aa|down_0|NZ_CP014024.2_1447321_1447972_-	pfam14485, DUF4431, Domain of unknown function (DUF4431)	NA|332aa|down_1|NZ_CP014024.2_1448702_1449698_+	COG3469, COG3469, Chitinase [Carbohydrate transport and metabolism]	NA|201aa|down_2|NZ_CP014024.2_1450484_1451087_-	cd03135, GATase1_DJ-1, Type 1 glutamine amidotransferase (GATase1)-like domain found in Human DJ-1	NA|113aa|down_3|NZ_CP014024.2_1451682_1452021_+	NA	NA|216aa|down_4|NZ_CP014024.2_1453779_1454427_+	pfam02517, Abi, CAAX protease self-immunity	NA|171aa|down_5|NZ_CP014024.2_1455914_1456427_-	NA	NA|130aa|down_6|NZ_CP014024.2_1457266_1457656_-	cd06587, VOC, vicinal oxygen chelate (VOC) family	NA|92aa|down_7|NZ_CP014024.2_1457901_1458177_-	NA	NA|74aa|down_8|NZ_CP014024.2_1458248_1458470_+	NA	NA|193aa|down_9|NZ_CP014024.2_1459363_1459942_-	NA
GCF_001558855.2_ASM155885v2	NZ_CP014024	Providencia stuartii strain FDAARGOS_145 chromosome, complete genome	3	1468011-1468398	3,2,3	PILER-CR,CRISPRCasFinder,CRT	no		csa3,DEDDh,cas3,DinG,cas6f,cas7f,cas5f,cas8f,cas3-cas2,cas1,WYL,cas14j	Orphan	GTTCACTGCCGTATAGGCAGCTTAGAAA,TTTCTAAGCTGCCTATACGGCAGTGAAC,TTTCTAAGCTGCCTATACGGCAGTGAAC	28,28,28	0	0	NA	NA	I-F:I-F:I-F	6,6,6	6	Orphan	csa3,DEDDh,cas3,DinG,cas6f,cas7f,cas5f,cas8f,cas3-cas2,cas1,WYL,cas14j	NA|171aa|up_9|NZ_CP014024.2_1455914_1456427_-,NA|92aa|up_7|NZ_CP014024.2_1457901_1458177_-,NA|74aa|up_6|NZ_CP014024.2_1458248_1458470_+,NA|193aa|up_5|NZ_CP014024.2_1459363_1459942_-,NA|169aa|up_4|NZ_CP014024.2_1460056_1460563_-,NA|57aa|down_0|NZ_CP014024.2_1468959_1469130_-,NA|89aa|down_8|NZ_CP014024.2_1477745_1478012_-	NA|171aa|up_9|NZ_CP014024.2_1455914_1456427_-	NA	NA|130aa|up_8|NZ_CP014024.2_1457266_1457656_-	cd06587, VOC, vicinal oxygen chelate (VOC) family	NA|92aa|up_7|NZ_CP014024.2_1457901_1458177_-	NA	NA|74aa|up_6|NZ_CP014024.2_1458248_1458470_+	NA	NA|193aa|up_5|NZ_CP014024.2_1459363_1459942_-	NA	NA|169aa|up_4|NZ_CP014024.2_1460056_1460563_-	NA	NA|207aa|up_3|NZ_CP014024.2_1460692_1461313_+	sd00010, SLR, Sel1-like repeat	NA|302aa|up_2|NZ_CP014024.2_1461788_1462694_+	pfam13683, rve_3, Integrase core domain	NA|340aa|up_1|NZ_CP014024.2_1463105_1464125_-	COG3547, COG3547, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|144aa|up_0|NZ_CP014024.2_1465980_1466412_-	cd17511, YbjN_AmyR-like, YbjN protein family is structurally similar to type III secretion system chaperones	NA|57aa|down_0|NZ_CP014024.2_1468959_1469130_-	NA	NA|183aa|down_1|NZ_CP014024.2_1470213_1470762_-	PRK10832, PRK10832, CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	NA|611aa|down_2|NZ_CP014024.2_1470819_1472652_-	PRK00558, uvrC, excinuclease ABC subunit UvrC	NA|229aa|down_3|NZ_CP014024.2_1472618_1473305_-	PRK09483, PRK09483, response regulator; Provisional	NA|411aa|down_4|NZ_CP014024.2_1473526_1474759_-	PRK13381, PRK13381, peptidase T; Provisional	NA|518aa|down_5|NZ_CP014024.2_1474794_1476348_-	COG2978, AbgT, Putative p-aminobenzoyl-glutamate transporter [Coenzyme metabolism]	NA|139aa|down_6|NZ_CP014024.2_1476642_1477059_-	PRK02833, PRK02833, phosphate-starvation-inducible protein PsiE; Provisional	NA|135aa|down_7|NZ_CP014024.2_1477267_1477672_-	COG3791, COG3791, Uncharacterized conserved protein [Function unknown]	NA|89aa|down_8|NZ_CP014024.2_1477745_1478012_-	NA	NA|491aa|down_9|NZ_CP014024.2_1478213_1479686_-	pfam13163, DUF3999, Protein of unknown function (DUF3999)
GCF_001558855.2_ASM155885v2	NZ_CP014024	Providencia stuartii strain FDAARGOS_145 chromosome, complete genome	4	1541214-1542142	4,3,4	PILER-CR,CRISPRCasFinder,CRT	no	cas6f,cas7f,cas5f,cas8f,cas3-cas2,cas1	csa3,DEDDh,cas3,DinG,cas6f,cas7f,cas5f,cas8f,cas3-cas2,cas1,WYL,cas14j	Type I-F	GTTCACTGCCGTATAGGCAGCTTAGAAA,TTTCTAAGCTGCCTATACGGCAGTGAAC,TTTCTAAGCTGCCTATNCGGCAGTGAAC	28,28,28	0	0	NA	NA	I-F:I-F:I-F	15,15,15	15	TypeI-F	csa3,DEDDh,cas3,DinG,cas6f,cas7f,cas5f,cas8f,cas3-cas2,cas1,WYL,cas14j	NA,NA	NA|455aa|up_9|NZ_CP014024.2_1532145_1533510_+	PRK07960, fliI, flagellum-specific ATP synthase FliI	NA|148aa|up_8|NZ_CP014024.2_1533520_1533964_+	PRK05689, fliJ, flagella biosynthesis chaperone FliJ	NA|454aa|up_7|NZ_CP014024.2_1533964_1535326_+	PRK10118, PRK10118, flagellar hook length control protein FliK	NA|161aa|up_6|NZ_CP014024.2_1535491_1535974_+	PRK07021, fliL, flagellar basal body-associated protein FliL; Reviewed	NA|336aa|up_5|NZ_CP014024.2_1535979_1536987_+	PRK06666, fliM, flagellar motor switch protein FliM; Validated	NA|139aa|up_4|NZ_CP014024.2_1536979_1537396_+	PRK07963, fliN, flagellar motor switch protein FliN; Validated	NA|143aa|up_3|NZ_CP014024.2_1537420_1537849_+	PRK11486, PRK11486, flagellar type III secretion system protein FliO	NA|248aa|up_2|NZ_CP014024.2_1537861_1538605_+	PRK05699, fliP, flagellar biosynthesis protein FliP; Reviewed	NA|90aa|up_1|NZ_CP014024.2_1538614_1538884_+	PRK05700, fliQ, flagellar type III secretion system protein FliQ	NA|261aa|up_0|NZ_CP014024.2_1538886_1539669_+	PRK05701, fliR, flagellar type III secretion system protein FliR	cas6f|212aa|down_0|NZ_CP014024.2_1542282_1542918_-	cd09739, Cas6_I-F, CRISPR/Cas system-associated RAMP superfamily protein Cas6f	cas7f|342aa|down_1|NZ_CP014024.2_1542926_1543952_-	pfam09615, Cas_Csy3, CRISPR-associated protein (Cas_Csy3)	cas5f|316aa|down_2|NZ_CP014024.2_1543954_1544902_-	pfam09614, Cas_Csy2, CRISPR-associated protein (Cas_Csy2)	cas8f|424aa|down_3|NZ_CP014024.2_1544898_1546170_-	pfam09611, Cas_Csy1, CRISPR-associated protein (Cas_Csy1)	cas3-cas2|1183aa|down_4|NZ_CP014024.2_1546320_1549869_-	TIGR02562, conserved_hypothetical_protein, CRISPR-associated helicase Cas3, subtype I-F/YPEST	cas1|326aa|down_5|NZ_CP014024.2_1549865_1550843_-	TIGR03637, cas1_YPEST, CRISPR-associated endonuclease Cas1, subtype I-F/YPEST	NA|312aa|down_6|NZ_CP014024.2_1551770_1552706_-	PRK08027, flgL, flagellar hook-filament junction protein FlgL	NA|547aa|down_7|NZ_CP014024.2_1552733_1554374_-	PRK08147, flgK, flagellar hook-associated protein FlgK; Validated	NA|327aa|down_8|NZ_CP014024.2_1554618_1555599_-	PRK05684, flgJ, flagellar assembly peptidoglycan hydrolase FlgJ	NA|368aa|down_9|NZ_CP014024.2_1555598_1556702_-	PRK05303, flgI, flagellar basal body P-ring protein FlgI
GCF_001558855.2_ASM155885v2	NZ_CP014024	Providencia stuartii strain FDAARGOS_145 chromosome, complete genome	5	1551109-1551513	4,5,5	CRISPRCasFinder,PILER-CR,CRT	no	cas6f,cas7f,cas5f,cas8f,cas3-cas2,cas1	csa3,DEDDh,cas3,DinG,cas6f,cas7f,cas5f,cas8f,cas3-cas2,cas1,WYL,cas14j	Type I-F	TTTCTAAGCTGCCTATACGGCAGTGAAC,GTTCACTGCCGTATAGGCAGCTTAGAAA,TTTCTAAGCTGCCTATACGGCAGTGAAC	28,28,28	0	0	NA	NA	I-F:I-F:I-F	6,5,5	6	TypeI-F	csa3,DEDDh,cas3,DinG,cas6f,cas7f,cas5f,cas8f,cas3-cas2,cas1,WYL,cas14j	NA,NA	NA|143aa|up_9|NZ_CP014024.2_1537420_1537849_+	PRK11486, PRK11486, flagellar type III secretion system protein FliO	NA|248aa|up_8|NZ_CP014024.2_1537861_1538605_+	PRK05699, fliP, flagellar biosynthesis protein FliP; Reviewed	NA|90aa|up_7|NZ_CP014024.2_1538614_1538884_+	PRK05700, fliQ, flagellar type III secretion system protein FliQ	NA|261aa|up_6|NZ_CP014024.2_1538886_1539669_+	PRK05701, fliR, flagellar type III secretion system protein FliR	cas6f|212aa|up_5|NZ_CP014024.2_1542282_1542918_-	cd09739, Cas6_I-F, CRISPR/Cas system-associated RAMP superfamily protein Cas6f	cas7f|342aa|up_4|NZ_CP014024.2_1542926_1543952_-	pfam09615, Cas_Csy3, CRISPR-associated protein (Cas_Csy3)	cas5f|316aa|up_3|NZ_CP014024.2_1543954_1544902_-	pfam09614, Cas_Csy2, CRISPR-associated protein (Cas_Csy2)	cas8f|424aa|up_2|NZ_CP014024.2_1544898_1546170_-	pfam09611, Cas_Csy1, CRISPR-associated protein (Cas_Csy1)	cas3-cas2|1183aa|up_1|NZ_CP014024.2_1546320_1549869_-	TIGR02562, conserved_hypothetical_protein, CRISPR-associated helicase Cas3, subtype I-F/YPEST	cas1|326aa|up_0|NZ_CP014024.2_1549865_1550843_-	TIGR03637, cas1_YPEST, CRISPR-associated endonuclease Cas1, subtype I-F/YPEST	NA|312aa|down_0|NZ_CP014024.2_1551770_1552706_-	PRK08027, flgL, flagellar hook-filament junction protein FlgL	NA|547aa|down_1|NZ_CP014024.2_1552733_1554374_-	PRK08147, flgK, flagellar hook-associated protein FlgK; Validated	NA|327aa|down_2|NZ_CP014024.2_1554618_1555599_-	PRK05684, flgJ, flagellar assembly peptidoglycan hydrolase FlgJ	NA|368aa|down_3|NZ_CP014024.2_1555598_1556702_-	PRK05303, flgI, flagellar basal body P-ring protein FlgI	NA|244aa|down_4|NZ_CP014024.2_1556743_1557475_-	PRK00249, flgH, flagellar basal body L-ring protein FlgH	NA|261aa|down_5|NZ_CP014024.2_1557600_1558383_-	PRK12693, flgG, flagellar basal body rod protein FlgG; Provisional	NA|252aa|down_6|NZ_CP014024.2_1558402_1559158_-	PRK12640, flgF, flagellar basal body rod protein FlgF; Reviewed	NA|407aa|down_7|NZ_CP014024.2_1559173_1560394_-	PRK05682, flgE, flagellar hook protein FlgE; Validated	NA|280aa|down_8|NZ_CP014024.2_1560424_1561264_-	PRK06655, flgD, flagellar hook assembly protein FlgD	NA|135aa|down_9|NZ_CP014024.2_1561276_1561681_-	PRK05681, flgC, flagellar basal body rod protein FlgC; Reviewed
