assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_001558775.1_ASM155877v1	NZ_CP014022	Staphylococcus lugdunensis strain FDAARGOS_141 chromosome, complete genome	1	545874-545960	1	CRISPRCasFinder	no		cas3,DinG,DEDDh,csa3,WYL	Orphan	GAAATTCGACAAACAAAGCAAGTTGGGGTG	30	1	1	545904-545930	NZ_CP014022.1_1103299-1103273	NA	1	1	Orphan	cas3,DinG,DEDDh,csa3,WYL	NA,NA	NA|241aa|up_9|NZ_CP014022.1_534256_534979_-	PRK00358, pyrH, uridylate kinase; Provisional	NA|293aa|up_8|NZ_CP014022.1_535115_535994_-	PRK09377, tsf, elongation factor Ts; Provisional	NA|263aa|up_7|NZ_CP014022.1_536177_536966_-	PRK05299, rpsB, 30S ribosomal protein S2; Provisional	NA|258aa|up_6|NZ_CP014022.1_537184_537958_-	PRK04158, PRK04158, GTP-sensing pleiotropic transcriptional regulator CodY	NA|468aa|up_5|NZ_CP014022.1_537979_539383_-	PRK05201, hslU, ATP-dependent protease ATPase subunit HslU	NA|181aa|up_4|NZ_CP014022.1_539429_539972_-	PRK05456, PRK05456, ATP-dependent protease subunit HslV	NA|298aa|up_3|NZ_CP014022.1_539972_540866_-	TIGR02224, Tyrosine_recombinase_XerC, tyrosine recombinase XerC	NA|436aa|up_2|NZ_CP014022.1_540997_542305_-	PRK05335, PRK05335, tRNA (uracil-5-)-methyltransferase Gid; Reviewed	NA|692aa|up_1|NZ_CP014022.1_542356_544432_-	PRK05582, PRK05582, type I DNA topoisomerase	NA|291aa|up_0|NZ_CP014022.1_544597_545470_-	pfam02481, DNA_processg_A, DNA recombination-mediator protein A	NA|412aa|down_0|NZ_CP014022.1_546128_547364_-	pfam02388, FemAB, FemAB family	NA|303aa|down_1|NZ_CP014022.1_547524_548433_-	PRK05678, PRK05678, succinyl-CoA synthetase subunit alpha; Validated	NA|389aa|down_2|NZ_CP014022.1_548454_549621_-	PRK00696, sucC, ADP-forming succinate--CoA ligase subunit beta	NA|256aa|down_3|NZ_CP014022.1_549731_550499_-	cd07182, RNase_HII_bacteria_HII_like, Bacterial Ribonuclease HII-like	NA|295aa|down_4|NZ_CP014022.1_550482_551367_-	PRK09563, rbgA, GTPase YlqF; Reviewed	NA|864aa|down_5|NZ_CP014022.1_551623_554215_+	pfam09586, YfhO, Bacterial membrane protein YfhO	NA|869aa|down_6|NZ_CP014022.1_554219_556826_+	COG4485, COG4485, Predicted membrane protein [Function unknown]	NA|117aa|down_7|NZ_CP014022.1_557072_557423_-	PRK05338, rplS, 50S ribosomal protein L19; Provisional	NA|246aa|down_8|NZ_CP014022.1_557528_558266_-	PRK00026, trmD, tRNA (guanine-N(1)-)-methyltransferase; Reviewed	NA|167aa|down_9|NZ_CP014022.1_558265_558766_-	PRK00122, rimM, 16S rRNA-processing protein RimM; Provisional
GCF_001558775.1_ASM155877v1	NZ_CP014022	Staphylococcus lugdunensis strain FDAARGOS_141 chromosome, complete genome	2	1062105-1062185	2	CRISPRCasFinder	no		cas3,DinG,DEDDh,csa3,WYL	Orphan	GGGGCCCCAGCACAAAGAAATGC	23	0	0	NA	NA	NA	1	1	Orphan	cas3,DinG,DEDDh,csa3,WYL	NA|34aa|up_9|NZ_CP014022.1_1054552_1054654_-,NA|227aa|up_5|NZ_CP014022.1_1057929_1058610_+,NA|99aa|up_1|NZ_CP014022.1_1060330_1060627_-,NA|151aa|up_0|NZ_CP014022.1_1060752_1061205_-,NA	NA|34aa|up_9|NZ_CP014022.1_1054552_1054654_-	NA	NA|311aa|up_8|NZ_CP014022.1_1054761_1055694_-	COG0523, COG0523, Putative GTPases (G3E family) [General function prediction only]	NA|147aa|up_7|NZ_CP014022.1_1055918_1056359_+	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein	NA|291aa|up_6|NZ_CP014022.1_1056740_1057613_+	PRK00281, PRK00281, undecaprenyl-diphosphate phosphatase	NA|227aa|up_5|NZ_CP014022.1_1057929_1058610_+	NA	NA|149aa|up_4|NZ_CP014022.1_1058614_1059061_+	PRK00124, PRK00124, YaiI/YqxD family protein	NA|189aa|up_3|NZ_CP014022.1_1059076_1059643_+	TIGR00730, LOG_family_protein_YJL055W, TIGR00730 family protein	NA|181aa|up_2|NZ_CP014022.1_1059674_1060217_-	pfam13302, Acetyltransf_3, Acetyltransferase (GNAT) domain	NA|99aa|up_1|NZ_CP014022.1_1060330_1060627_-	NA	NA|151aa|up_0|NZ_CP014022.1_1060752_1061205_-	NA	NA|162aa|down_0|NZ_CP014022.1_1062554_1063040_-	COG2839, COG2839, Uncharacterized protein conserved in bacteria [Function unknown]	NA|406aa|down_1|NZ_CP014022.1_1063041_1064259_-	cd17471, MFS_Set, Sugar efflux transporter (Set) family of the Major Facilitator Superfamily of transporters	NA|285aa|down_2|NZ_CP014022.1_1064344_1065199_-	COG0583, LysR, Transcriptional regulator [Transcription]	NA|205aa|down_3|NZ_CP014022.1_1065706_1066321_-	COG2306, COG2306, Predicted RNA-binding protein, associated with RNAses E/G family [General function prediction only]	NA|156aa|down_4|NZ_CP014022.1_1066704_1067172_-	cd06121, cupin_YML079wp, Saccharomyces cerevisiae YML079wp and related proteins, cupin domain	NA|239aa|down_5|NZ_CP014022.1_1067171_1067888_-	PRK12378, PRK12378, YebC/PmpR family DNA-binding transcriptional regulator	NA|120aa|down_6|NZ_CP014022.1_1068121_1068481_-	TIGR01889, Pleiotropic_Regulator_Of_Virulence, staphylococcal accessory regulator family	NA|715aa|down_7|NZ_CP014022.1_1068624_1070769_-	COG2207, AraC, AraC-type DNA-binding domain-containing proteins [Transcription]	NA|218aa|down_8|NZ_CP014022.1_1071077_1071731_-	COG0670, COG0670, Integral membrane protein, interacts with FtsH [General function prediction only]	NA|268aa|down_9|NZ_CP014022.1_1072098_1072902_+	COG3942, COG3942, Surface antigen [General function prediction only]
GCF_001558775.1_ASM155877v1	NZ_CP014022	Staphylococcus lugdunensis strain FDAARGOS_141 chromosome, complete genome	3	1648160-1648250	3	CRISPRCasFinder	no		cas3,DinG,DEDDh,csa3,WYL	Orphan	CCCCAACTTGCTTTGCTTGATGAATTTCTTTTT	33	0	0	NA	NA	NA	1	1	Orphan	cas3,DinG,DEDDh,csa3,WYL	NA|107aa|up_9|NZ_CP014022.1_1638120_1638441_+,NA|90aa|up_8|NZ_CP014022.1_1638504_1638774_+,NA|193aa|up_5|NZ_CP014022.1_1640941_1641520_-,NA|101aa|down_5|NZ_CP014022.1_1656761_1657064_+	NA|107aa|up_9|NZ_CP014022.1_1638120_1638441_+	NA	NA|90aa|up_8|NZ_CP014022.1_1638504_1638774_+	NA	NA|266aa|up_7|NZ_CP014022.1_1639147_1639945_-	pfam00797, Acetyltransf_2, N-acetyltransferase	NA|252aa|up_6|NZ_CP014022.1_1640082_1640838_-	PRK12826, PRK12826, SDR family oxidoreductase	NA|193aa|up_5|NZ_CP014022.1_1640941_1641520_-	NA	NA|512aa|up_4|NZ_CP014022.1_1641767_1643303_+	TIGR02002, PTS_system_glucose-specific_IIABC_component, PTS system, glucose-specific IIBC component	NA|257aa|up_3|NZ_CP014022.1_1643508_1644279_-	cd05349, BKR_2_SDR_c, putative beta-ketoacyl acyl carrier protein [ACP]reductase (BKR), subgroup 2, classical (c) SDR	NA|478aa|up_2|NZ_CP014022.1_1644299_1645733_-	cd07080, ALDH_Acyl-CoA-Red_LuxC, Acyl-CoA reductase LuxC	NA|356aa|up_1|NZ_CP014022.1_1645745_1646813_-	pfam04443, LuxE, Acyl-protein synthetase, LuxE	NA|191aa|up_0|NZ_CP014022.1_1647314_1647887_+	COG4721, COG4721, ABC-type cobalt transport system, predicted permease component [Inorganic ion transport and metabolism]	NA|459aa|down_0|NZ_CP014022.1_1648316_1649693_-	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily	NA|1011aa|down_1|NZ_CP014022.1_1649705_1652738_-	cd04735, OYE_like_4_FMN, Old yellow enzyme (OYE)-related FMN binding domain, group 4	NA|299aa|down_2|NZ_CP014022.1_1652815_1653712_-	COG1477, ApbE, Membrane-associated lipoprotein involved in thiamine biosynthesis [Coenzyme metabolism]	NA|171aa|down_3|NZ_CP014022.1_1654031_1654544_+	COG3247, HdeD, Uncharacterized conserved protein [Function unknown]	NA|400aa|down_4|NZ_CP014022.1_1655056_1656256_+	COG1168, MalY, Bifunctional PLP-dependent enzyme with beta-cystathionase and maltose regulon repressor activities [Amino acid transport and metabolism]	NA|101aa|down_5|NZ_CP014022.1_1656761_1657064_+	NA	NA|451aa|down_6|NZ_CP014022.1_1657568_1658921_+	TIGR01350, Dihydrolipoyl_dehydrogenase, dihydrolipoamide dehydrogenase	NA|316aa|down_7|NZ_CP014022.1_1659009_1659957_+	cd02000, TPP_E1_PDC_ADC_BCADC, Thiamine pyrophosphate (TPP) family, E1 of PDC_ADC_BCADC subfamily, TPP-binding module; composed of proteins similar to the E1 components of the human pyruvate dehydrogenase complex (PDC), the acetoin dehydrogenase complex (ADC) and the branched chain alpha-keto acid dehydrogenase/2-oxoisovalerate dehydrogenase complex (BCADC)	NA|347aa|down_8|NZ_CP014022.1_1659972_1661013_+	COG0022, AcoB, Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, beta subunit [Energy production and conversion]	NA|431aa|down_9|NZ_CP014022.1_1661030_1662323_+	PRK11856, PRK11856, branched-chain alpha-keto acid dehydrogenase subunit E2; Reviewed
GCF_001558775.1_ASM155877v1	NZ_CP014022	Staphylococcus lugdunensis strain FDAARGOS_141 chromosome, complete genome	4	2450823-2450912	4	CRISPRCasFinder	no		cas3,DinG,DEDDh,csa3,WYL	Orphan	TGATTGAGAAGTCAGTCGAAAAAC	24	0	0	NA	NA	NA	1	1	Orphan	cas3,DinG,DEDDh,csa3,WYL	NA,NA|49aa|down_2|NZ_CP014022.1_2451465_2451612_+,NA|70aa|down_3|NZ_CP014022.1_2451604_2451814_+,NA|115aa|down_9|NZ_CP014022.1_2456451_2456796_+	NA|48aa|up_9|NZ_CP014022.1_2440935_2441079_-	smart00794, AgrD, Staphylococcal AgrD protein	NA|189aa|up_8|NZ_CP014022.1_2441081_2441648_-	smart00793, AgrB, Accessory gene regulator B	NA|262aa|up_7|NZ_CP014022.1_2442275_2443061_-	cd07583, nitrilase_5, Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases)	NA|208aa|up_6|NZ_CP014022.1_2443195_2443819_-	COG3560, FMR2, Predicted oxidoreductase related to nitroreductase [General function prediction only]	NA|503aa|up_5|NZ_CP014022.1_2444012_2445521_+	pfam05297, Herpes_LMP1, Herpesvirus latent membrane protein 1 (LMP1)	NA|247aa|up_4|NZ_CP014022.1_2445939_2446680_-	pfam02517, Abi, CAAX protease self-immunity	NA|95aa|up_3|NZ_CP014022.1_2446860_2447145_+	PRK00364, groES, co-chaperonin GroES; Reviewed	NA|541aa|up_2|NZ_CP014022.1_2447204_2448827_+	PRK00013, groEL, chaperonin GroEL; Reviewed	NA|391aa|up_1|NZ_CP014022.1_2448895_2450068_-	cd01189, INT_ICEBs1_C_like, C-terminal catalytic domain of integrases from bacterial phages and conjugate transposons	NA|225aa|up_0|NZ_CP014022.1_2450081_2450756_-	pfam13443, HTH_26, Cro/C1-type HTH DNA-binding domain	NA|73aa|down_0|NZ_CP014022.1_2450928_2451147_+	smart00530, HTH_XRE, Helix-turn-helix XRE-family like proteins	NA|106aa|down_1|NZ_CP014022.1_2451151_2451469_+	TIGR01764, Probable_excisionase, DNA binding domain, excisionase family	NA|49aa|down_2|NZ_CP014022.1_2451465_2451612_+	NA	NA|70aa|down_3|NZ_CP014022.1_2451604_2451814_+	NA	NA|108aa|down_4|NZ_CP014022.1_2451816_2452140_+	pfam07342, DUF1474, Protein of unknown function (DUF1474)	NA|290aa|down_5|NZ_CP014022.1_2452203_2453073_+	smart00942, PriCT_1, Primase C terminal 1 (PriCT-1)	NA|570aa|down_6|NZ_CP014022.1_2453086_2454796_+	COG5519, COG5519, Superfamily II helicase and inactivated derivatives [DNA replication, recombination, and repair]	NA|122aa|down_7|NZ_CP014022.1_2455143_2455509_+	cd03313, enolase, Enolase: Enolases are homodimeric enzymes that catalyse the reversible dehydration of 2-phospho-D-glycerate to phosphoenolpyruvate as part of the glycolytic and gluconeogenesis pathways	NA|214aa|down_8|NZ_CP014022.1_2455522_2456164_+	pfam16560, SAPI, Putative mobile pathogenicity island	NA|115aa|down_9|NZ_CP014022.1_2456451_2456796_+	NA
