assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_001553545.1_ASM155354v1	NZ_CP014227	Capnocytophaga haemolytica strain CCUG 32990 chromosome, complete genome	1	62054-62175	1	CRISPRCasFinder	no		DEDDh,WYL,cas3	Orphan	GTTGTGAATTGCTTTCAAATTTTGTAGTTTTGTGATTGATAACAAC	46	0	0	NA	NA	NA	1	1	Orphan	DEDDh,WYL,cas3	NA|129aa|up_4|NZ_CP014227.1_58736_59123_+,NA|136aa|up_3|NZ_CP014227.1_59197_59605_-,NA|124aa|up_1|NZ_CP014227.1_60390_60762_-,NA|307aa|up_0|NZ_CP014227.1_60833_61754_-,NA|353aa|down_1|NZ_CP014227.1_62912_63971_+,NA|140aa|down_2|NZ_CP014227.1_64173_64593_+,NA|57aa|down_5|NZ_CP014227.1_66354_66525_+	NA|775aa|up_9|NZ_CP014227.1_49868_52193_-	TIGR02073, Includes:_Penicillin-insensitive_transglycosylase, penicillin-binding protein 1C	NA|442aa|up_8|NZ_CP014227.1_52649_53975_+	cd16894, MltD-like, Membrane-bound lytic murein transglycosylase D and similar proteins	NA|292aa|up_7|NZ_CP014227.1_54128_55004_+	cd13961, PT_UbiA_DGGGPS, Geranylgeranylglycerol-phosphate geranylgeranyltransferase	NA|831aa|up_6|NZ_CP014227.1_55078_57571_-	sd00010, SLR, Sel1-like repeat	NA|268aa|up_5|NZ_CP014227.1_57646_58450_-	pfam11306, DUF3108, Protein of unknown function (DUF3108)	NA|129aa|up_4|NZ_CP014227.1_58736_59123_+	NA	NA|136aa|up_3|NZ_CP014227.1_59197_59605_-	NA	NA|83aa|up_2|NZ_CP014227.1_59690_59939_-	COG2261, COG2261, Predicted membrane protein [Function unknown]	NA|124aa|up_1|NZ_CP014227.1_60390_60762_-	NA	NA|307aa|up_0|NZ_CP014227.1_60833_61754_-	NA	NA|146aa|down_0|NZ_CP014227.1_62345_62783_+	PRK00733, hppA, membrane-bound proton-translocating pyrophosphatase; Validated	NA|353aa|down_1|NZ_CP014227.1_62912_63971_+	NA	NA|140aa|down_2|NZ_CP014227.1_64173_64593_+	NA	NA|286aa|down_3|NZ_CP014227.1_64799_65657_+	PRK05654, PRK05654, acetyl-CoA carboxylase carboxyltransferase subunit beta	NA|204aa|down_4|NZ_CP014227.1_65738_66350_+	cd03140, GATase1_PfpI_3, Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus	NA|57aa|down_5|NZ_CP014227.1_66354_66525_+	NA	NA|334aa|down_6|NZ_CP014227.1_66542_67544_+	COG3407, MVD1, Mevalonate pyrophosphate decarboxylase [Lipid metabolism]	NA|69aa|down_7|NZ_CP014227.1_67633_67840_+	pfam13644, DKNYY, DKNYY family	NA|94aa|down_8|NZ_CP014227.1_67764_68046_+	pfam13644, DKNYY, DKNYY family	NA|108aa|down_9|NZ_CP014227.1_68088_68412_+	pfam13644, DKNYY, DKNYY family
GCF_001553545.1_ASM155354v1	NZ_CP014227	Capnocytophaga haemolytica strain CCUG 32990 chromosome, complete genome	2	1479737-1479857	2	CRISPRCasFinder	no		DEDDh,WYL,cas3	Orphan	CTCCAAATGCACTATCTCCACCTCAGCTTTGC	32	0	0	NA	NA	NA	1	1	Orphan	DEDDh,WYL,cas3	NA|46aa|up_8|NZ_CP014227.1_1469903_1470041_-,NA	NA|268aa|up_9|NZ_CP014227.1_1469018_1469822_-	pfam09509, Hypoth_Ymh, Protein of unknown function (Hypoth_ymh)	NA|46aa|up_8|NZ_CP014227.1_1469903_1470041_-	NA	NA|631aa|up_7|NZ_CP014227.1_1470059_1471952_-	PRK00290, dnaK, molecular chaperone DnaK; Provisional	NA|805aa|up_6|NZ_CP014227.1_1472133_1474548_-	cd02094, P-type_ATPase_Cu-like, P-type heavy metal-transporting ATPase, similar to human copper-transporting ATPases, ATP7A and ATP7B	NA|67aa|up_5|NZ_CP014227.1_1474553_1474754_-	cd00371, HMA, Heavy-metal-associated domain (HMA) is a conserved domain of approximately 30 amino acid residues found in a number of proteins that transport or detoxify heavy metals, for example, the CPx-type heavy metal ATPases and copper chaperones	NA|278aa|up_4|NZ_CP014227.1_1474860_1475694_-	sd00036, LRR_3, leucine-rich repeats	NA|190aa|up_3|NZ_CP014227.1_1476126_1476696_+	cd00446, GrpE, nucleotide exchange factor GrpE	NA|370aa|up_2|NZ_CP014227.1_1476706_1477816_+	PRK14289, PRK14289, molecular chaperone DnaJ	NA|243aa|up_1|NZ_CP014227.1_1477969_1478698_+	cd00413, Glyco_hydrolase_16, glycosyl hydrolase family 16	NA|223aa|up_0|NZ_CP014227.1_1478885_1479554_+	pfam13505, OMP_b-brl, Outer membrane protein beta-barrel domain	NA|310aa|down_0|NZ_CP014227.1_1480210_1481140_-	PRK05627, PRK05627, bifunctional riboflavin kinase/FAD synthetase	NA|597aa|down_1|NZ_CP014227.1_1481114_1482905_-	COG1022, FAA1, Long-chain acyl-CoA synthetases (AMP-forming) [Lipid metabolism]	NA|746aa|down_2|NZ_CP014227.1_1483183_1485421_-	pfam07971, Glyco_hydro_92, Glycosyl hydrolase family 92	NA|396aa|down_3|NZ_CP014227.1_1485428_1486616_-	PRK05579, PRK05579, bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Validated	NA|105aa|down_4|NZ_CP014227.1_1486705_1487020_-	pfam01192, RNA_pol_Rpb6, RNA polymerase Rpb6	NA|266aa|down_5|NZ_CP014227.1_1487032_1487830_-	TIGR03302, OM_YfiO, outer membrane assembly lipoprotein YfiO	NA|249aa|down_6|NZ_CP014227.1_1488151_1488898_-	cd05333, BKR_SDR_c, beta-Keto acyl carrier protein reductase (BKR), involved in Type II FAS, classical (c) SDRs	NA|107aa|down_7|NZ_CP014227.1_1488941_1489262_-	cd11567, YciH_like, Homologs of eIF1/SUI1 including Escherichia coli YciH	NA|508aa|down_8|NZ_CP014227.1_1489272_1490796_-	pfam14092, DUF4270, Domain of unknown function (DUF4270)	NA|270aa|down_9|NZ_CP014227.1_1490798_1491608_-	pfam08323, Glyco_transf_5, Starch synthase catalytic domain
GCF_001553545.1_ASM155354v1	NZ_CP014227	Capnocytophaga haemolytica strain CCUG 32990 chromosome, complete genome	3	2046156-2046259	3	CRISPRCasFinder	no		DEDDh,WYL,cas3	Orphan	CGACAGCCAATTAGTTGTGCACTGCTA	27	0	0	NA	NA	NA	1	1	Orphan	DEDDh,WYL,cas3	NA|102aa|up_8|NZ_CP014227.1_2035265_2035571_-,NA|81aa|up_7|NZ_CP014227.1_2035533_2035776_-,NA|481aa|up_6|NZ_CP014227.1_2035854_2037297_-,NA|69aa|up_3|NZ_CP014227.1_2041290_2041497_-,NA|144aa|up_2|NZ_CP014227.1_2041498_2041930_-,NA|114aa|down_8|NZ_CP014227.1_2054804_2055146_-,NA|282aa|down_9|NZ_CP014227.1_2055243_2056089_-	NA|604aa|up_9|NZ_CP014227.1_2033448_2035260_-	pfam13646, HEAT_2, HEAT repeats	NA|102aa|up_8|NZ_CP014227.1_2035265_2035571_-	NA	NA|81aa|up_7|NZ_CP014227.1_2035533_2035776_-	NA	NA|481aa|up_6|NZ_CP014227.1_2035854_2037297_-	NA	NA|493aa|up_5|NZ_CP014227.1_2037624_2039103_+	COG1233, COG1233, Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]	NA|697aa|up_4|NZ_CP014227.1_2039178_2041269_-	cd08662, M13, Peptidase family M13 includes neprilysin and endothelin-converting enzyme I	NA|69aa|up_3|NZ_CP014227.1_2041290_2041497_-	NA	NA|144aa|up_2|NZ_CP014227.1_2041498_2041930_-	NA	NA|193aa|up_1|NZ_CP014227.1_2041926_2042505_-	COG1853, COG1853, Conserved protein/domain typically associated with flavoprotein oxygenases, DIM6/NTAB family [General function prediction only]	NA|230aa|up_0|NZ_CP014227.1_2045454_2046144_+	pfam16265, DUF4918, Domain of unknown function (DUF4918)	NA|386aa|down_0|NZ_CP014227.1_2046316_2047474_-	COG4591, LolE, ABC-type transport system, involved in lipoprotein release, permease component [Cell envelope biogenesis, outer membrane]	NA|415aa|down_1|NZ_CP014227.1_2047535_2048780_+	pfam07075, DUF1343, Protein of unknown function (DUF1343)	NA|286aa|down_2|NZ_CP014227.1_2048855_2049713_+	cd06524, GH25_YegX-like, YegX is an uncharacterized bacterial protein with a glycosyl hydrolase family 25 (GH25) catalytic domain that is similar in sequence to the CH-type (Chalaropsis-type) lysozymes of the GH25 family of endolysins	NA|195aa|down_3|NZ_CP014227.1_2049731_2050316_+	TIGR02727, Uncharacterized_protein_YqgN, 5,10-methenyltetrahydrofolate synthetase	NA|246aa|down_4|NZ_CP014227.1_2050276_2051014_-	COG0169, AroE, Shikimate 5-dehydrogenase [Amino acid transport and metabolism]	NA|416aa|down_5|NZ_CP014227.1_2051017_2052265_-	PRK10535, PRK10535, macrolide ABC transporter ATP-binding protein/permease MacB	NA|511aa|down_6|NZ_CP014227.1_2052356_2053889_+	PRK00881, purH, bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase; Provisional	NA|246aa|down_7|NZ_CP014227.1_2053986_2054724_+	pfam02405, MlaE, Permease MlaE	NA|114aa|down_8|NZ_CP014227.1_2054804_2055146_-	NA	NA|282aa|down_9|NZ_CP014227.1_2055243_2056089_-	NA
GCF_001553545.1_ASM155354v1	NZ_CP014227	Capnocytophaga haemolytica strain CCUG 32990 chromosome, complete genome	4	2119439-2119654	1	CRT	no		DEDDh,WYL,cas3	Orphan	CAGAATAAAATATTCTGA	18	0	0	NA	NA	NA	5	5	Orphan	DEDDh,WYL,cas3	NA,NA|246aa|down_0|NZ_CP014227.1_2119943_2120681_+,NA|299aa|down_9|NZ_CP014227.1_2132328_2133225_-	NA|325aa|up_9|NZ_CP014227.1_2107822_2108797_-	pfam00348, polyprenyl_synt, Polyprenyl synthetase	NA|213aa|up_8|NZ_CP014227.1_2108793_2109432_-	cd05250, CC3_like_SDR_a, CC3(TIP30)-like, atypical (a) SDRs	NA|350aa|up_7|NZ_CP014227.1_2109886_2110936_+	PRK00147, queA, S-adenosylmethionine:tRNA ribosyltransferase-isomerase; Provisional	NA|164aa|up_6|NZ_CP014227.1_2111053_2111545_+	PRK05205, PRK05205, bifunctional pyr operon transcriptional regulator/uracil phosphoribosyltransferase PyrR	NA|623aa|up_5|NZ_CP014227.1_2111620_2113489_+	cd01115, SLC13_permease, Permease SLC13 (solute carrier 13)	NA|386aa|up_4|NZ_CP014227.1_2113891_2115049_+	COG1104, NifS, Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes [Amino acid transport and metabolism]	NA|605aa|up_3|NZ_CP014227.1_2115209_2117024_+	pfam03993, DUF349, Domain of Unknown Function (DUF349)	NA|197aa|up_2|NZ_CP014227.1_2117116_2117707_+	PRK14823, PRK14823, putative deoxyribonucleoside-triphosphatase; Provisional	NA|232aa|up_1|NZ_CP014227.1_2117758_2118454_+	cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and cell division protein	NA|285aa|up_0|NZ_CP014227.1_2118486_2119341_+	cd06423, CESA_like, CESA_like is  the cellulose synthase superfamily	NA|246aa|down_0|NZ_CP014227.1_2119943_2120681_+	NA	NA|793aa|down_1|NZ_CP014227.1_2120811_2123190_+	cd02000, TPP_E1_PDC_ADC_BCADC, Thiamine pyrophosphate (TPP) family, E1 of PDC_ADC_BCADC subfamily, TPP-binding module; composed of proteins similar to the E1 components of the human pyruvate dehydrogenase complex (PDC), the acetoin dehydrogenase complex (ADC) and the branched chain alpha-keto acid dehydrogenase/2-oxoisovalerate dehydrogenase complex (BCADC)	NA|128aa|down_2|NZ_CP014227.1_2123269_2123653_-	COG1188, COG1188, Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit (S4 paralog) [Translation, ribosomal structure and biogenesis]	NA|278aa|down_3|NZ_CP014227.1_2123740_2124574_+	COG0545, FkpA, FKBP-type peptidyl-prolyl cis-trans isomerases 1 [Posttranslational modification, protein turnover, chaperones]	NA|234aa|down_4|NZ_CP014227.1_2124600_2125302_+	COG1183, PssA, Phosphatidylserine synthase [Lipid metabolism]	NA|647aa|down_5|NZ_CP014227.1_2125269_2127210_-	pfam03772, Competence, Competence protein	NA|288aa|down_6|NZ_CP014227.1_2127206_2128070_-	pfam00877, NLPC_P60, NlpC/P60 family	NA|848aa|down_7|NZ_CP014227.1_2128112_2130656_-	COG0542, clpA, ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]	NA|433aa|down_8|NZ_CP014227.1_2130992_2132291_-	pfam13372, Alginate_exp, Alginate export	NA|299aa|down_9|NZ_CP014227.1_2132328_2133225_-	NA
GCF_001553545.1_ASM155354v1	NZ_CP014227	Capnocytophaga haemolytica strain CCUG 32990 chromosome, complete genome	5	2183187-2183382	4	CRISPRCasFinder	no		DEDDh,WYL,cas3	Orphan	CGTTGATGTGTCGCCAACAAGTTTTA	26	0	0	NA	NA	NA	4	4	Orphan	DEDDh,WYL,cas3	NA,NA|135aa|down_2|NZ_CP014227.1_2185242_2185647_-,NA|216aa|down_3|NZ_CP014227.1_2185691_2186339_-	NA|180aa|up_9|NZ_CP014227.1_2169008_2169548_+	pfam07659, DUF1599, Domain of Unknown Function (DUF1599)	NA|365aa|up_8|NZ_CP014227.1_2169593_2170688_+	COG2259, COG2259, Predicted membrane protein [Function unknown]	NA|308aa|up_7|NZ_CP014227.1_2170687_2171611_+	TIGR02225, Tyrosine_recombinase_XerD, tyrosine recombinase XerD	NA|124aa|up_6|NZ_CP014227.1_2171669_2172041_-	pfam11680, DUF3276, Protein of unknown function (DUF3276)	NA|769aa|up_5|NZ_CP014227.1_2172218_2174525_-	COG5009, MrcA, Membrane carboxypeptidase/penicillin-binding protein [Cell envelope biogenesis, outer membrane]	NA|163aa|up_4|NZ_CP014227.1_2174533_2175022_-	pfam14109, GldH_lipo, GldH lipoprotein	NA|465aa|up_3|NZ_CP014227.1_2175008_2176403_-	COG1774, COG1774, Uncharacterized homolog of PSP1 [Function unknown]	NA|1052aa|up_2|NZ_CP014227.1_2176733_2179889_-	COG0841, AcrB, Cation/multidrug efflux pump [Defense mechanisms]	NA|483aa|up_1|NZ_CP014227.1_2180938_2182387_-	TIGR01845, Outer_membrane_protein_OprM, efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family	NA|187aa|up_0|NZ_CP014227.1_2182536_2183097_-	TIGR04056, OMP_RagA_SusC, TonB-linked outer membrane protein, SusC/RagA family	NA|182aa|down_0|NZ_CP014227.1_2183396_2183942_-	pfam02525, Flavodoxin_2, Flavodoxin-like fold	NA|366aa|down_1|NZ_CP014227.1_2184006_2185104_-	TIGR01730, COG0845:_Membrane-fusion_protein, RND family efflux transporter, MFP subunit	NA|135aa|down_2|NZ_CP014227.1_2185242_2185647_-	NA	NA|216aa|down_3|NZ_CP014227.1_2185691_2186339_-	NA	NA|395aa|down_4|NZ_CP014227.1_2186438_2187623_+	cd00585, Peptidase_C1B, Peptidase C1B subfamily (MEROPS database nomenclature); composed of eukaryotic bleomycin hydrolases (BH) and bacterial aminopeptidases C (pepC)	NA|126aa|down_5|NZ_CP014227.1_2187713_2188091_-	TIGR00004, RutC_family_protein, reactive intermediate/imine deaminase	NA|566aa|down_6|NZ_CP014227.1_2188104_2189802_-	pfam01551, Peptidase_M23, Peptidase family M23	NA|233aa|down_7|NZ_CP014227.1_2190177_2190876_+	pfam08447, PAS_3, PAS fold	NA|226aa|down_8|NZ_CP014227.1_2190916_2191594_+	pfam08447, PAS_3, PAS fold	NA|599aa|down_9|NZ_CP014227.1_2191713_2193510_+	COG1022, FAA1, Long-chain acyl-CoA synthetases (AMP-forming) [Lipid metabolism]
