The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP014259	Agrobacterium tumefaciens strain S33 chromosome circular, complete sequence	2497934	262896	320170	2497934	transposase,integrase	Stx2-converting_phage(22.22%)	45	279083:279097	321880:321894
WP_141226907.1|262896_263995_+|transposase	IS3 family transposase	transposase	S5WIU1	Leptospira_phage	40.4	8.8e-48
WP_060942105.1|264280_265945_-	electron transfer flavoprotein-ubiquinone oxidoreductase	NA	NA	NA	NA	NA
WP_060942106.1|266056_266407_+	hypothetical protein	NA	NA	NA	NA	NA
WP_060942107.1|266505_267435_-	electron transfer flavoprotein subunit alpha/FixB family protein	NA	NA	NA	NA	NA
WP_035209956.1|267512_268262_-	electron transfer flavoprotein subunit beta/FixA family protein	NA	NA	NA	NA	NA
WP_035209892.1|268561_269914_-	MFS transporter	NA	Q6JIH2	Burkholderia_virus	30.9	1.6e-46
WP_035209888.1|270361_271537_+	FAD-dependent monooxygenase	NA	NA	NA	NA	NA
WP_035209885.1|272582_272960_+	nuclear transport factor 2 family protein	NA	NA	NA	NA	NA
WP_024899819.1|273062_275078_+	6-hydroxypseudooxynicotine oxidase	NA	NA	NA	NA	NA
WP_155682121.1|275627_275864_+	hypothetical protein	NA	NA	NA	NA	NA
WP_035209951.1|275939_276302_+|transposase	transposase	transposase	NA	NA	NA	NA
WP_035209882.1|276298_276646_+	IS66 family insertion sequence element accessory protein TnpB	NA	A0A0P0ZBY2	Stx2-converting_phage	53.3	4.6e-27
WP_035209880.1|276718_278284_+|transposase	IS66 family transposase	transposase	A0A0P0ZEB3	Stx2-converting_phage	44.3	5.3e-115
WP_035209878.1|278283_278589_+	hypothetical protein	NA	NA	NA	NA	NA
WP_035209876.1|278635_279988_+|transposase	ISL3 family transposase	transposase	NA	NA	NA	NA
279083:279097	attL	GCGAAGGCCGTCGCA	NA	NA	NA	NA
WP_035209874.1|280263_282474_-	HAMP domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	36.5	5.7e-14
WP_035209873.1|283368_284403_-	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_035209949.1|286310_287825_+	group II intron reverse transcriptase/maturase	NA	A0A0U4J920	Pseudomonas_phage	31.1	1.5e-45
WP_081093240.1|287989_289840_+|transposase	IS630 family transposase	transposase	NA	NA	NA	NA
WP_035209870.1|290233_290914_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_141226908.1|291089_292115_-	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_035209868.1|292155_292956_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_035209866.1|292948_293854_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_024899991.1|293856_294930_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	35.7	1.3e-27
WP_035209864.1|295106_295739_-	isochorismatase family protein	NA	NA	NA	NA	NA
WP_024899993.1|295800_296829_-	leucyl aminopeptidase	NA	NA	NA	NA	NA
WP_035209863.1|296854_297637_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_145926120.1|297649_298351_-	Asp/Glu racemase	NA	NA	NA	NA	NA
WP_035209861.1|298937_299345_+	hypothetical protein	NA	NA	NA	NA	NA
WP_035209857.1|299628_301026_+	aldehyde dehydrogenase family protein	NA	NA	NA	NA	NA
WP_035209855.1|301055_302369_+	FAD-dependent oxidoreductase	NA	A0A2K9L3H9	Tupanvirus	21.8	8.4e-13
WP_081093325.1|302475_302838_-	pseudoazurin	NA	NA	NA	NA	NA
WP_035209853.1|302988_305238_-	nicotine dehydrogenase subunit alpha NdhA	NA	NA	NA	NA	NA
WP_024900002.1|305234_305702_-	(2Fe-2S)-binding protein	NA	NA	NA	NA	NA
WP_155682122.1|305984_306653_+	TetR family transcriptional regulator	NA	NA	NA	NA	NA
WP_035209849.1|306815_307718_-	NADP-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_035209848.1|307797_308196_-	DoxX family protein	NA	NA	NA	NA	NA
WP_024900007.1|308227_308608_-	glutathione S-transferase domain-containing protein	NA	NA	NA	NA	NA
WP_035209847.1|309610_310525_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_081093241.1|311187_312135_+	XdhC family protein	NA	NA	NA	NA	NA
WP_155682147.1|314046_315186_-	DUF1612 domain-containing protein	NA	NA	NA	NA	NA
WP_035209839.1|315707_316625_+	DNA invertase	NA	A0A0F7LA37	Escherichia_phage	52.4	5.1e-33
WP_081093242.1|316611_317676_-	hypothetical protein	NA	NA	NA	NA	NA
WP_035209837.1|317672_318596_-	AAA family ATPase	NA	NA	NA	NA	NA
WP_141226905.1|318586_320170_-|integrase,transposase	DDE-type integrase/transposase/recombinase	integrase,transposase	NA	NA	NA	NA
321880:321894	attR	GCGAAGGCCGTCGCA	NA	NA	NA	NA
>prophage 1
NZ_CP014260	Agrobacterium tumefaciens strain S33 chromosome linear, complete sequence	2983661	440925	449182	2983661	tRNA	uncultured_Mediterranean_phage(66.67%)	8	NA	NA
WP_035211526.1|440925_442458_+	AMP-binding protein	NA	A0A2K9KZV5	Tupanvirus	22.2	4.8e-20
WP_081093508.1|442537_443719_+	type III PLP-dependent enzyme	NA	NA	NA	NA	NA
WP_035211534.1|443719_444877_-	aminodeoxychorismate synthase component I	NA	S4VT78	Pandoravirus	42.7	8.9e-43
WP_004442089.1|445068_446199_-|tRNA	tRNA guanosine(34) transglycosylase Tgt	tRNA	A0A1B1IVQ4	uncultured_Mediterranean_phage	53.0	2.1e-105
WP_022556255.1|446198_447281_-|tRNA	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	tRNA	NA	NA	NA	NA
WP_004442093.1|447543_448053_-	peptidylprolyl isomerase	NA	A0A1B1IVS0	uncultured_Mediterranean_phage	58.8	6.5e-46
WP_004442095.1|448089_448659_-	peptidylprolyl isomerase	NA	A0A1B1IVS0	uncultured_Mediterranean_phage	53.8	8.5e-47
WP_004442098.1|448687_449182_-	pantetheine-phosphate adenylyltransferase	NA	A0A1B1IVQ3	uncultured_Mediterranean_phage	37.7	1.9e-26
>prophage 2
NZ_CP014260	Agrobacterium tumefaciens strain S33 chromosome linear, complete sequence	2983661	465498	473901	2983661	tRNA	uncultured_Mediterranean_phage(75.0%)	9	NA	NA
WP_080822811.1|465498_467109_-	LysM peptidoglycan-binding domain-containing M23 family metallopeptidase	NA	I3PV24	Clostridium_phage	30.4	1.1e-11
WP_080822813.1|467409_468051_-	protein-L-isoaspartate(D-aspartate) O-methyltransferase	NA	A0A1J0MC37	Streptomyces_phage	35.1	1.0e-11
WP_004442133.1|468059_468830_-	5'/3'-nucleotidase SurE	NA	A0A1B1ITZ2	uncultured_Mediterranean_phage	29.8	1.8e-23
WP_004442134.1|469003_470287_-|tRNA	serine--tRNA ligase	tRNA	A0A1B1IVT2	uncultured_Mediterranean_phage	45.8	1.8e-97
WP_022556270.1|470388_471192_-	twin-arginine translocase subunit TatC	NA	A0A1B1IVR7	uncultured_Mediterranean_phage	40.7	2.4e-42
WP_035211999.1|471188_471935_-	twin-arginine translocase subunit TatB	NA	NA	NA	NA	NA
WP_003509722.1|471991_472198_-	twin-arginine translocase TatA/TatE family subunit	NA	A0A1B1IVR9	uncultured_Mediterranean_phage	69.8	2.1e-08
WP_035211997.1|472328_473063_-	SMC-Scp complex subunit ScpB	NA	A0A1B1IVT7	uncultured_Mediterranean_phage	47.1	4.5e-40
WP_034498970.1|473055_473901_-	segregation/condensation protein A	NA	A0A1B1IVW1	uncultured_Mediterranean_phage	34.7	1.5e-34
>prophage 3
NZ_CP014260	Agrobacterium tumefaciens strain S33 chromosome linear, complete sequence	2983661	2355255	2364798	2983661	head,portal,capsid	Sinorhizobium_phage(33.33%)	11	NA	NA
WP_035208999.1|2355255_2355633_-	hypothetical protein	NA	A0A219VHA5	Ochrobactrum_phage	38.0	5.7e-07
WP_035208998.1|2355634_2356285_-	hypothetical protein	NA	NA	NA	NA	NA
WP_035208996.1|2356288_2356621_-	hypothetical protein	NA	NA	NA	NA	NA
WP_035208995.1|2356742_2357012_-	hypothetical protein	NA	NA	NA	NA	NA
WP_035208994.1|2357067_2358114_-|capsid	major capsid protein	capsid	V5Q8G6	Xylella_phage	40.3	8.3e-64
WP_035208993.1|2358135_2358489_-|head	head decoration protein	head	A0A291AUM0	Sinorhizobium_phage	47.2	6.3e-16
WP_051634421.1|2358501_2359902_-	S49 family peptidase	NA	A0A219YA27	Aeromonas_phage	37.8	4.5e-33
WP_051634420.1|2359978_2360788_+	hypothetical protein	NA	NA	NA	NA	NA
WP_060942501.1|2360784_2362365_-|portal	phage portal protein	portal	A0A291AUL8	Sinorhizobium_phage	33.8	2.0e-61
WP_035208991.1|2362372_2362609_-	hypothetical protein	NA	NA	NA	NA	NA
WP_035208989.1|2362608_2364798_-	hypothetical protein	NA	A0A2H4JIC6	uncultured_Caudovirales_phage	34.1	4.7e-85
>prophage 4
NZ_CP014260	Agrobacterium tumefaciens strain S33 chromosome linear, complete sequence	2983661	2715943	2723317	2983661	portal,tail,protease,head,capsid	Geobacillus_phage(33.33%)	11	NA	NA
WP_004440739.1|2715943_2717110_+|portal	phage portal protein	portal	W8ECU7	Geobacillus_phage	38.7	4.6e-63
WP_003509186.1|2717297_2717618_+	hypothetical protein	NA	NA	NA	NA	NA
WP_004440741.1|2717646_2718237_+|head,protease	HK97 family phage prohead protease	head,protease	A0A0U2BX10	Paracoccus_phage	44.1	1.4e-28
WP_006700093.1|2718268_2719537_+|capsid	phage major capsid protein	capsid	Q3HQT0	Burkholderia_phage	42.1	1.1e-75
WP_035210200.1|2719706_2720276_+	hypothetical protein	NA	NA	NA	NA	NA
WP_035210199.1|2720279_2720621_+|head	phage head closure protein	head	NA	NA	NA	NA
WP_004440751.1|2720617_2721013_+	DUF3168 domain-containing protein	NA	NA	NA	NA	NA
WP_081093581.1|2721019_2722129_-	MFS transporter	NA	NA	NA	NA	NA
WP_022555861.1|2722308_2722716_+|tail	phage major tail protein, TP901-1 family	tail	NA	NA	NA	NA
WP_006700098.1|2722715_2723075_+	gene transfer agent family protein	NA	NA	NA	NA	NA
WP_081093487.1|2723071_2723317_+|tail	phage tail assembly chaperone	tail	NA	NA	NA	NA
>prophage 5
NZ_CP014260	Agrobacterium tumefaciens strain S33 chromosome linear, complete sequence	2983661	2949757	2967523	2983661		Rhizobium_phage(26.67%)	22	NA	NA
WP_035207728.1|2949757_2950504_+	hypothetical protein	NA	L7TLT1	Rhizobium_phage	48.2	2.3e-44
WP_035207730.1|2950546_2950996_+	endodeoxyribonuclease	NA	A0A2D2W4Y6	Ralstonia_phage	63.4	3.7e-45
WP_035207731.1|2951049_2951295_+	hypothetical protein	NA	NA	NA	NA	NA
WP_035207733.1|2951422_2951650_+	hypothetical protein	NA	NA	NA	NA	NA
WP_035207734.1|2951651_2952152_+	hypothetical protein	NA	NA	NA	NA	NA
WP_141226877.1|2952334_2953846_+	hypothetical protein	NA	L7TLT7	Rhizobium_phage	57.9	9.5e-162
WP_035207736.1|2953820_2954015_+	hypothetical protein	NA	NA	NA	NA	NA
WP_035207737.1|2954011_2956081_+	hypothetical protein	NA	A0A076YNV1	Mesorhizobium_phage	50.2	9.0e-187
WP_113394540.1|2955989_2956442_+	GIY-YIG nuclease family protein	NA	L7TL71	Escherichia_phage	42.0	5.4e-12
WP_155682182.1|2956450_2956633_+	hypothetical protein	NA	NA	NA	NA	NA
WP_035207746.1|2956614_2957454_+	hypothetical protein	NA	A0A2R2ZGE9	Ralstonia_phage	40.4	1.1e-47
WP_051634348.1|2957450_2957831_+	hypothetical protein	NA	Q0E5Y8	Pseudomonas_phage	42.5	1.3e-11
WP_155682183.1|2957830_2958385_+	adenylate kinase	NA	C7F4A4	Cyanophage	38.6	1.2e-24
WP_051634350.1|2958812_2960384_+	hypothetical protein	NA	A0A2R2ZGG8	Ralstonia_phage	44.5	5.7e-109
WP_035207752.1|2960383_2960572_+	hypothetical protein	NA	NA	NA	NA	NA
WP_035207758.1|2960571_2961342_+	hypothetical protein	NA	L0CNX3	Synechococcus_virus	28.9	3.3e-09
WP_035207759.1|2961399_2961819_+	hypothetical protein	NA	A0A076YNV9	Mesorhizobium_phage	59.4	3.9e-49
WP_035207762.1|2962038_2962425_+	hypothetical protein	NA	NA	NA	NA	NA
WP_081093591.1|2963285_2964014_+	hypothetical protein	NA	L7TJ83	Rhizobium_phage	47.2	2.1e-53
WP_035207768.1|2964072_2964639_+	hypothetical protein	NA	A0A076YQK3	Mesorhizobium_phage	33.3	1.6e-21
WP_155682184.1|2964730_2967034_+	hypothetical protein	NA	L7TLW2	Rhizobium_phage	33.3	1.5e-102
WP_051634352.1|2967049_2967523_+	hypothetical protein	NA	A0A1B1IW17	uncultured_Mediterranean_phage	35.4	2.6e-17
