assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_001548435.1_ASM154843v1	NZ_AP017308	Leptolyngbya sp. NIES-3755 DNA, complete genome	1	165914-166004	1	CRISPRCasFinder	no		PD-DExK,csa3,Cas14u_CAS-V,cas14j,cas3,DEDDh,cmr5gr11,cmr4gr7,cmr3gr5,cas10,WYL,cas10d,csc2gr7,csc1gr5,cas6,cas4,cas1,cas2,c2c5_V-U5,cas14k,c2c9_V-U4,Cas9_archaeal,DinG	Orphan	GGACAGAAACAGGTACAGGAACTAG	25	0	0	NA	NA	NA	1	1	Orphan	PD-DExK,csa3,Cas14u_CAS-V,cas14j,cas3,DEDDh,cmr5gr11,cmr4gr7,cmr3gr5,cas10,WYL,cas10d,csc2gr7,csc1gr5,cas6,cas4,cas1,cas2,c2c5_V-U5,cas14k,c2c9_V-U4,Cas9_archaeal,DinG,RT	NA|76aa|up_9|NZ_AP017308.1_159834_160062_-,NA|118aa|up_8|NZ_AP017308.1_160103_160457_-,NA|107aa|up_7|NZ_AP017308.1_161206_161527_+,NA|161aa|up_6|NZ_AP017308.1_161583_162066_+,NA|90aa|up_5|NZ_AP017308.1_162086_162356_+,NA|223aa|up_4|NZ_AP017308.1_162340_163009_+,NA|64aa|up_3|NZ_AP017308.1_163191_163383_+,NA|66aa|up_2|NZ_AP017308.1_163366_163564_+,NA|101aa|up_0|NZ_AP017308.1_164412_164715_+,NA|273aa|down_0|NZ_AP017308.1_167111_167930_+,NA|182aa|down_1|NZ_AP017308.1_168033_168579_+,NA|78aa|down_2|NZ_AP017308.1_168578_168812_+,NA|169aa|down_3|NZ_AP017308.1_168793_169300_+,NA|113aa|down_4|NZ_AP017308.1_169296_169635_+,NA|151aa|down_6|NZ_AP017308.1_170731_171184_+,NA|61aa|down_7|NZ_AP017308.1_171155_171338_+	NA|76aa|up_9|NZ_AP017308.1_159834_160062_-	NA	NA|118aa|up_8|NZ_AP017308.1_160103_160457_-	NA	NA|107aa|up_7|NZ_AP017308.1_161206_161527_+	NA	NA|161aa|up_6|NZ_AP017308.1_161583_162066_+	NA	NA|90aa|up_5|NZ_AP017308.1_162086_162356_+	NA	NA|223aa|up_4|NZ_AP017308.1_162340_163009_+	NA	NA|64aa|up_3|NZ_AP017308.1_163191_163383_+	NA	NA|66aa|up_2|NZ_AP017308.1_163366_163564_+	NA	NA|197aa|up_1|NZ_AP017308.1_163710_164301_-	PHA03247, PHA03247, large tegument protein UL36; Provisional	NA|101aa|up_0|NZ_AP017308.1_164412_164715_+	NA	NA|273aa|down_0|NZ_AP017308.1_167111_167930_+	NA	NA|182aa|down_1|NZ_AP017308.1_168033_168579_+	NA	NA|78aa|down_2|NZ_AP017308.1_168578_168812_+	NA	NA|169aa|down_3|NZ_AP017308.1_168793_169300_+	NA	NA|113aa|down_4|NZ_AP017308.1_169296_169635_+	NA	NA|366aa|down_5|NZ_AP017308.1_169631_170729_+	cd00057, FA58C, Coagulation factor 5/8 C-terminal domain, discoidin domain; Cell surface-attached carbohydrate-binding domain, present in eukaryotes and assumed to have horizontally transferred to eubacterial genomes	NA|151aa|down_6|NZ_AP017308.1_170731_171184_+	NA	NA|61aa|down_7|NZ_AP017308.1_171155_171338_+	NA	NA|158aa|down_8|NZ_AP017308.1_171606_172080_-	cd00796, INT_Rci_Hp1_C, Shufflon-specific DNA recombinase Rci and Bacteriophage Hp1_like integrase, C-terminal catalytic domain	NA|497aa|down_9|NZ_AP017308.1_172557_174048_-	cd01171, YXKO-related, B
GCF_001548435.1_ASM154843v1	NZ_AP017308	Leptolyngbya sp. NIES-3755 DNA, complete genome	2	769038-769144	2	CRISPRCasFinder	no		PD-DExK,csa3,Cas14u_CAS-V,cas14j,cas3,DEDDh,cmr5gr11,cmr4gr7,cmr3gr5,cas10,WYL,cas10d,csc2gr7,csc1gr5,cas6,cas4,cas1,cas2,c2c5_V-U5,cas14k,c2c9_V-U4,Cas9_archaeal,DinG	Orphan	GCTTGAGCAATTTCTTGAGGACGATTGCC	29	0	0	NA	NA	NA	1	1	Orphan	PD-DExK,csa3,Cas14u_CAS-V,cas14j,cas3,DEDDh,cmr5gr11,cmr4gr7,cmr3gr5,cas10,WYL,cas10d,csc2gr7,csc1gr5,cas6,cas4,cas1,cas2,c2c5_V-U5,cas14k,c2c9_V-U4,Cas9_archaeal,DinG,RT	NA|74aa|up_3|NZ_AP017308.1_762759_762981_-,NA|69aa|down_0|NZ_AP017308.1_769922_770129_+	NA|464aa|up_9|NZ_AP017308.1_755291_756683_-	PRK00485, fumC, fumarate hydratase; Reviewed	NA|683aa|up_8|NZ_AP017308.1_756790_758839_+	COG0286, HsdM, Type I restriction-modification system methyltransferase subunit [Defense mechanisms]	NA|452aa|up_7|NZ_AP017308.1_758838_760194_+	cd17521, RMtype1_S_Sau13435ORF2165P_TRD2-CR2_like, Type I restriction-modification system specificity (S) subunit TRD-CR, similar to Staphylococcus aureus NCTC 13435 S subunit (S	NA|426aa|up_6|NZ_AP017308.1_760202_761480_+	COG3950, COG3950, Predicted ATP-binding protein involved in virulence [General function prediction only]	NA|234aa|up_5|NZ_AP017308.1_761454_762156_+	TIGR02646, Hypothetical_protein_SMc04429, TIGR02646 family protein	NA|136aa|up_4|NZ_AP017308.1_762351_762759_-	pfam13470, PIN_3, PIN domain	NA|74aa|up_3|NZ_AP017308.1_762759_762981_-	NA	NA|1004aa|up_2|NZ_AP017308.1_763088_766100_+	COG0610, COG0610, Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]	NA|222aa|up_1|NZ_AP017308.1_766089_766755_-	COG1136, SalX, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]	NA|420aa|up_0|NZ_AP017308.1_766767_768027_-	PRK10535, PRK10535, macrolide ABC transporter ATP-binding protein/permease MacB	NA|69aa|down_0|NZ_AP017308.1_769922_770129_+	NA	NA|480aa|down_1|NZ_AP017308.1_770541_771981_+	TIGR03025, EPS_sugtrans, exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase	NA|135aa|down_2|NZ_AP017308.1_772174_772579_+	cd02994, PDI_a_TMX, PDIa family, TMX subfamily; composed of proteins similar to the TRX-related human transmembrane protein, TMX	NA|762aa|down_3|NZ_AP017308.1_772658_774944_+	cd05387, BY-kinase, bacterial tyrosine-kinase	NA|337aa|down_4|NZ_AP017308.1_774958_775969_+	COG1596, Wza, Periplasmic protein involved in polysaccharide export, contains    SLBB domain of b-grasp fold [Cell wall/membrane/envelope biogenesis]	NA|466aa|down_5|NZ_AP017308.1_776002_777400_+	cd13127, MATE_tuaB_like, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins	NA|435aa|down_6|NZ_AP017308.1_777404_778709_+	COG3307, RfaL, Lipid A core - O-antigen ligase and related enzymes [Cell envelope biogenesis, outer membrane]	NA|309aa|down_7|NZ_AP017308.1_778713_779640_+	cd06433, GT_2_WfgS_like, WfgS and WfeV are involved in O-antigen biosynthesis	NA|375aa|down_8|NZ_AP017308.1_779636_780761_+	cd05844, GT4-like, glycosyltransferase family 4 proteins	NA|311aa|down_9|NZ_AP017308.1_780788_781721_+	pfam00535, Glycos_transf_2, Glycosyl transferase family 2
GCF_001548435.1_ASM154843v1	NZ_AP017308	Leptolyngbya sp. NIES-3755 DNA, complete genome	3	1544646-1544773	3	CRISPRCasFinder	no		PD-DExK,csa3,Cas14u_CAS-V,cas14j,cas3,DEDDh,cmr5gr11,cmr4gr7,cmr3gr5,cas10,WYL,cas10d,csc2gr7,csc1gr5,cas6,cas4,cas1,cas2,c2c5_V-U5,cas14k,c2c9_V-U4,Cas9_archaeal,DinG	Orphan	TCTGCCCCTCGTAAATCTGCTCC	23	1	1	1544669-1544690	NZ_AP017308.1_1544759-1544780	NA	2	2	Orphan	PD-DExK,csa3,Cas14u_CAS-V,cas14j,cas3,DEDDh,cmr5gr11,cmr4gr7,cmr3gr5,cas10,WYL,cas10d,csc2gr7,csc1gr5,cas6,cas4,cas1,cas2,c2c5_V-U5,cas14k,c2c9_V-U4,Cas9_archaeal,DinG,RT	NA|139aa|up_3|NZ_AP017308.1_1540397_1540814_-,NA|72aa|up_2|NZ_AP017308.1_1540806_1541022_-,NA|323aa|down_0|NZ_AP017308.1_1545065_1546034_-	NA|358aa|up_9|NZ_AP017308.1_1533146_1534220_-	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|489aa|up_8|NZ_AP017308.1_1534549_1536016_-	cd11347, AmyAc_1, Alpha amylase catalytic domain found in an uncharacterized protein family	NA|43aa|up_7|NZ_AP017308.1_1537215_1537344_-	PRK13686, PRK13686, photosystem II reaction center protein Ycf12	NA|235aa|up_6|NZ_AP017308.1_1537567_1538272_+	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|375aa|up_5|NZ_AP017308.1_1538268_1539393_+	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms]	NA|269aa|up_4|NZ_AP017308.1_1539601_1540408_+	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]	NA|139aa|up_3|NZ_AP017308.1_1540397_1540814_-	NA	NA|72aa|up_2|NZ_AP017308.1_1540806_1541022_-	NA	NA|602aa|up_1|NZ_AP017308.1_1541275_1543081_+	COG1538, TolC, Outer membrane protein [Cell envelope biogenesis, outer membrane / Intracellular trafficking and secretion]	NA|302aa|up_0|NZ_AP017308.1_1543154_1544060_+	pfam01551, Peptidase_M23, Peptidase family M23	NA|323aa|down_0|NZ_AP017308.1_1545065_1546034_-	NA	NA|108aa|down_1|NZ_AP017308.1_1546172_1546496_+	TIGR02008, Ferredoxin_root_R-B1, ferredoxin [2Fe-2S]	NA|352aa|down_2|NZ_AP017308.1_1546652_1547708_+	pfam11805, DUF3326, Protein of unknown function (DUF3326)	NA|195aa|down_3|NZ_AP017308.1_1547784_1548369_+	pfam02517, Abi, CAAX protease self-immunity	NA|764aa|down_4|NZ_AP017308.1_1548439_1550731_-	COG1061, SSL2, DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair]	NA|94aa|down_5|NZ_AP017308.1_1550870_1551152_-	pfam11645, PDDEXK_5, PD-(D/E)XK endonuclease	NA|117aa|down_6|NZ_AP017308.1_1551558_1551909_+	COG0727, COG0727, Predicted Fe-S-cluster oxidoreductase [General function prediction only]	NA|120aa|down_7|NZ_AP017308.1_1551968_1552328_+	COG2119, COG2119, Predicted membrane protein [Function unknown]	NA|99aa|down_8|NZ_AP017308.1_1552331_1552628_+	COG2119, COG2119, Predicted membrane protein [Function unknown]	NA|157aa|down_9|NZ_AP017308.1_1552686_1553157_-	pfam13664, DUF4149, Domain of unknown function (DUF4149)
GCF_001548435.1_ASM154843v1	NZ_AP017308	Leptolyngbya sp. NIES-3755 DNA, complete genome	4	2221361-2222417	1,4,1	PILER-CR,CRISPRCasFinder,CRT	no		PD-DExK,csa3,Cas14u_CAS-V,cas14j,cas3,DEDDh,cmr5gr11,cmr4gr7,cmr3gr5,cas10,WYL,cas10d,csc2gr7,csc1gr5,cas6,cas4,cas1,cas2,c2c5_V-U5,cas14k,c2c9_V-U4,Cas9_archaeal,DinG	Orphan	CTTTCGCGCCTGCTAATCCCGGCAACGGGACTGAAAC,CTTTCGCGCCTGCTAATCCCGGCAACGGGACTGAAAC,CTTTCGCGCCTGCTAATCCCGGCAACGGGACTGAAAC	37,37,37	0	0	NA	NA	NA:NA:NA	14,14,14	14	Orphan	PD-DExK,csa3,Cas14u_CAS-V,cas14j,cas3,DEDDh,cmr5gr11,cmr4gr7,cmr3gr5,cas10,WYL,cas10d,csc2gr7,csc1gr5,cas6,cas4,cas1,cas2,c2c5_V-U5,cas14k,c2c9_V-U4,Cas9_archaeal,DinG,RT	NA|116aa|up_1|NZ_AP017308.1_2220229_2220577_+,NA|125aa|down_3|NZ_AP017308.1_2225146_2225521_-	NA|712aa|up_9|NZ_AP017308.1_2208283_2210419_+	COG1596, Wza, Periplasmic protein involved in polysaccharide export, contains    SLBB domain of b-grasp fold [Cell wall/membrane/envelope biogenesis]	NA|715aa|up_8|NZ_AP017308.1_2210522_2212667_+	cd05387, BY-kinase, bacterial tyrosine-kinase	NA|493aa|up_7|NZ_AP017308.1_2212883_2214362_+	PRK09441, PRK09441, cytoplasmic alpha-amylase; Reviewed	NA|631aa|up_6|NZ_AP017308.1_2214414_2216307_-	pfam04966, OprB, Carbohydrate-selective porin, OprB family	NA|321aa|up_5|NZ_AP017308.1_2216383_2217346_-	cd07325, M48_Ste24p_like, M48 Ste24 endopeptidase-like, integral membrane metallopeptidase	NA|232aa|up_4|NZ_AP017308.1_2217468_2218164_-	cd03141, GATase1_Hsp31_like, Type 1 glutamine amidotransferase (GATase1)-like domain found in proteins similar to Escherichia coli Hsp31 protein	NA|276aa|up_3|NZ_AP017308.1_2218252_2219080_+	COG0583, LysR, Transcriptional regulator [Transcription]	NA|311aa|up_2|NZ_AP017308.1_2219101_2220034_+	COG3491, PcbC, Isopenicillin N synthase and related dioxygenases [General function prediction only]	NA|116aa|up_1|NZ_AP017308.1_2220229_2220577_+	NA	NA|188aa|up_0|NZ_AP017308.1_2220573_2221137_+	pfam08819, DUF1802, Domain of unknown function (DUF1802)	NA|290aa|down_0|NZ_AP017308.1_2222756_2223626_+	PRK05481, PRK05481, lipoyl synthase; Provisional	NA|307aa|down_1|NZ_AP017308.1_2223622_2224543_+	PRK14619, PRK14619, NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional	NA|132aa|down_2|NZ_AP017308.1_2224758_2225154_-	pfam01844, HNH, HNH endonuclease	NA|125aa|down_3|NZ_AP017308.1_2225146_2225521_-	NA	NA|704aa|down_4|NZ_AP017308.1_2225712_2227824_+	sd00006, TPR, Tetratricopeptide repeat	NA|182aa|down_5|NZ_AP017308.1_2228036_2228582_+	PRK00819, PRK00819, RNA 2'-phosphotransferase; Reviewed	NA|375aa|down_6|NZ_AP017308.1_2228573_2229698_-	pfam12698, ABC2_membrane_3, ABC-2 family transporter protein	NA|369aa|down_7|NZ_AP017308.1_2229703_2230810_-	pfam12698, ABC2_membrane_3, ABC-2 family transporter protein	NA|646aa|down_8|NZ_AP017308.1_2230806_2232744_-	COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms]	NA|430aa|down_9|NZ_AP017308.1_2232746_2234036_-	PRK03598, PRK03598, putative efflux pump membrane fusion protein; Provisional
GCF_001548435.1_ASM154843v1	NZ_AP017308	Leptolyngbya sp. NIES-3755 DNA, complete genome	5	2276712-2276905	5,2	CRISPRCasFinder,PILER-CR	no		PD-DExK,csa3,Cas14u_CAS-V,cas14j,cas3,DEDDh,cmr5gr11,cmr4gr7,cmr3gr5,cas10,WYL,cas10d,csc2gr7,csc1gr5,cas6,cas4,cas1,cas2,c2c5_V-U5,cas14k,c2c9_V-U4,Cas9_archaeal,DinG	Orphan	CGATCGGACGATTCCCATCGACT,CGATCGGACGATTCCCATCGA	23,21	0	0	NA	NA	NA:NA	3,3	3	Orphan	PD-DExK,csa3,Cas14u_CAS-V,cas14j,cas3,DEDDh,cmr5gr11,cmr4gr7,cmr3gr5,cas10,WYL,cas10d,csc2gr7,csc1gr5,cas6,cas4,cas1,cas2,c2c5_V-U5,cas14k,c2c9_V-U4,Cas9_archaeal,DinG,RT	NA|231aa|up_9|NZ_AP017308.1_2267626_2268319_+,NA|203aa|up_8|NZ_AP017308.1_2269060_2269669_+,NA|91aa|down_0|NZ_AP017308.1_2277107_2277380_+,NA|211aa|down_4|NZ_AP017308.1_2279976_2280609_+,NA|112aa|down_5|NZ_AP017308.1_2280973_2281309_+	NA|231aa|up_9|NZ_AP017308.1_2267626_2268319_+	NA	NA|203aa|up_8|NZ_AP017308.1_2269060_2269669_+	NA	NA|239aa|up_7|NZ_AP017308.1_2269728_2270445_+	COG0571, Rnc, dsRNA-specific ribonuclease [Transcription]	NA|328aa|up_6|NZ_AP017308.1_2270483_2271467_+	COG0673, MviM, Predicted dehydrogenases and related proteins [General function prediction only]	NA|144aa|up_5|NZ_AP017308.1_2271535_2271967_+	PRK13261, ureE, urease accessory protein UreE; Provisional	NA|223aa|up_4|NZ_AP017308.1_2271950_2272619_+	COG0830, UreF, Urease accessory protein UreF [Posttranslational modification, protein turnover, chaperones]	NA|80aa|up_3|NZ_AP017308.1_2272647_2272887_+	pfam10047, DUF2281, Protein of unknown function (DUF2281)	NA|131aa|up_2|NZ_AP017308.1_2272887_2273280_+	cd18745, PIN_VapC4-5_FitB-like, uncharacterized subgroup of the PIN_VapC4-5_FitB-like subfamily of the PIN domain superfamily	NA|241aa|up_1|NZ_AP017308.1_2273474_2274197_-	pfam01609, DDE_Tnp_1, Transposase DDE domain	NA|116aa|up_0|NZ_AP017308.1_2276098_2276446_+	PRK10039, PRK10039, hypothetical protein; Provisional	NA|91aa|down_0|NZ_AP017308.1_2277107_2277380_+	NA	NA|122aa|down_1|NZ_AP017308.1_2277376_2277742_+	TIGR03698, clan_AA_DTGF, clan AA aspartic protease, AF_0612 family	NA|486aa|down_2|NZ_AP017308.1_2277893_2279351_+	CHL00060, atpB, ATP synthase CF1 beta subunit	NA|137aa|down_3|NZ_AP017308.1_2279412_2279823_+	CHL00063, atpE, ATP synthase CF1 epsilon subunit	NA|211aa|down_4|NZ_AP017308.1_2279976_2280609_+	NA	NA|112aa|down_5|NZ_AP017308.1_2280973_2281309_+	NA	NA|81aa|down_6|NZ_AP017308.1_2281321_2281564_+	pfam16277, DUF4926, Domain of unknown function (DUF4926)	NA|79aa|down_7|NZ_AP017308.1_2281728_2281965_-	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins	NA|487aa|down_8|NZ_AP017308.1_2282279_2283740_-	COG2208, RsbU, Serine phosphatase RsbU, regulator of sigma subunit [Signal transduction mechanisms / Transcription]	NA|225aa|down_9|NZ_AP017308.1_2284056_2284731_-	cd01038, Endonuclease_DUF559, Domain of unknown function, appears to be related to a diverse group of endonucleases
GCF_001548435.1_ASM154843v1	NZ_AP017308	Leptolyngbya sp. NIES-3755 DNA, complete genome	6	2341404-2342462	3,6,2	PILER-CR,CRISPRCasFinder,CRT	no		PD-DExK,csa3,Cas14u_CAS-V,cas14j,cas3,DEDDh,cmr5gr11,cmr4gr7,cmr3gr5,cas10,WYL,cas10d,csc2gr7,csc1gr5,cas6,cas4,cas1,cas2,c2c5_V-U5,cas14k,c2c9_V-U4,Cas9_archaeal,DinG	Orphan	CTTTCGCACCTACTAATCCCGGCAACGGGACTGAAAC,CTTTCGCACCTACTAATCCCGGCAACGGGACTGAAAC,CTTTCGCACCTACTAATCCCGGCAACGGGACTGAAAC	37,37,37	0	0	NA	NA	NA:NA:NA	12,13,14	14	Orphan	PD-DExK,csa3,Cas14u_CAS-V,cas14j,cas3,DEDDh,cmr5gr11,cmr4gr7,cmr3gr5,cas10,WYL,cas10d,csc2gr7,csc1gr5,cas6,cas4,cas1,cas2,c2c5_V-U5,cas14k,c2c9_V-U4,Cas9_archaeal,DinG,RT	NA|84aa|up_9|NZ_AP017308.1_2327464_2327716_+,NA|292aa|up_7|NZ_AP017308.1_2330348_2331224_-,NA	NA|84aa|up_9|NZ_AP017308.1_2327464_2327716_+	NA	NA|824aa|up_8|NZ_AP017308.1_2327785_2330257_-	COG4796, HofQ, Type II secretory pathway, component HofQ [Intracellular trafficking and secretion]	NA|292aa|up_7|NZ_AP017308.1_2330348_2331224_-	NA	NA|293aa|up_6|NZ_AP017308.1_2331220_2332099_-	COG3166, PilN, Tfp pilus assembly protein PilN [Cell motility and secretion / Intracellular trafficking and secretion]	NA|363aa|up_5|NZ_AP017308.1_2332099_2333188_-	COG4972, PilM, Tfp pilus assembly protein, ATPase PilM [Cell motility and secretion / Intracellular trafficking and secretion]	NA|288aa|up_4|NZ_AP017308.1_2333957_2334821_-	PRK00513, minC, septum formation inhibitor; Reviewed	NA|800aa|up_3|NZ_AP017308.1_2334973_2337373_+	TIGR02470, Sucrose_synthase_1, sucrose synthase	NA|276aa|up_2|NZ_AP017308.1_2337413_2338241_-	pfam05685, Uma2, Putative restriction endonuclease	NA|402aa|up_1|NZ_AP017308.1_2338346_2339552_-	PTZ00395, PTZ00395, Sec24-related protein; Provisional	NA|385aa|up_0|NZ_AP017308.1_2339989_2341144_+	pfam01551, Peptidase_M23, Peptidase family M23	NA|128aa|down_0|NZ_AP017308.1_2342489_2342873_+	COG1463, Ttg2C, ABC-type transport system involved in resistance to organic solvents, periplasmic component [Secondary metabolites biosynthesis, transport, and catabolism]	NA|633aa|down_1|NZ_AP017308.1_2342947_2344846_-	PRK05192, PRK05192, tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG	NA|211aa|down_2|NZ_AP017308.1_2344983_2345616_+	TIGR00498, LexA_repressor	NA|299aa|down_3|NZ_AP017308.1_2345684_2346581_+	pfam01972, SDH_sah, Serine dehydrogenase proteinase	NA|312aa|down_4|NZ_AP017308.1_2346664_2347600_-	PLN02632, PLN02632, phytoene synthase	NA|473aa|down_5|NZ_AP017308.1_2347631_2349050_-	TIGR02731, Phytoene_dehydrogenase_chloroplastic/chromoplastic, phytoene desaturase	NA|697aa|down_6|NZ_AP017308.1_2349630_2351721_+	smart00758, PA14, domain in bacterial beta-glucosidases other glycosidases, glycosyltransferases, proteases, amidases, yeast adhesins, and bacterial toxins	NA|502aa|down_7|NZ_AP017308.1_2351751_2353257_-	COG1233, COG1233, Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]	NA|268aa|down_8|NZ_AP017308.1_2353713_2354517_+	COG2894, MinD, Septum formation inhibitor-activating ATPase [Cell division and chromosome partitioning]	NA|129aa|down_9|NZ_AP017308.1_2354544_2354931_+	PRK13988, PRK13988, cell division topological specificity factor MinE; Provisional
GCF_001548435.1_ASM154843v1	NZ_AP017308	Leptolyngbya sp. NIES-3755 DNA, complete genome	7	3147145-3147234	7	CRISPRCasFinder	no	cmr5gr11,cmr4gr7,cmr3gr5,cas10,cas14j	PD-DExK,csa3,Cas14u_CAS-V,cas14j,cas3,DEDDh,cmr5gr11,cmr4gr7,cmr3gr5,cas10,WYL,cas10d,csc2gr7,csc1gr5,cas6,cas4,cas1,cas2,c2c5_V-U5,cas14k,c2c9_V-U4,Cas9_archaeal,DinG	Type III-B,Type III-D,Type III-A,Type III-C	CCTGTTACCACCTGTTACCACCT	23	0	0	NA	NA	NA	1	1	TypeV,TypeIII-B,TypeIII-D,TypeIII-A,TypeIII-C	PD-DExK,csa3,Cas14u_CAS-V,cas14j,cas3,DEDDh,cmr5gr11,cmr4gr7,cmr3gr5,cas10,WYL,cas10d,csc2gr7,csc1gr5,cas6,cas4,cas1,cas2,c2c5_V-U5,cas14k,c2c9_V-U4,Cas9_archaeal,DinG,RT	NA|246aa|up_9|NZ_AP017308.1_3138967_3139705_+,NA|470aa|up_8|NZ_AP017308.1_3139778_3141188_+,NA|90aa|up_6|NZ_AP017308.1_3142638_3142908_+,NA|72aa|up_5|NZ_AP017308.1_3143178_3143394_+,NA|209aa|up_4|NZ_AP017308.1_3143471_3144098_-,NA|202aa|up_3|NZ_AP017308.1_3145246_3145852_-,NA|119aa|up_2|NZ_AP017308.1_3145844_3146201_-,NA|71aa|up_1|NZ_AP017308.1_3146206_3146419_-,NA|154aa|up_0|NZ_AP017308.1_3146476_3146938_-,NA|64aa|down_0|NZ_AP017308.1_3147856_3148048_-,NA|84aa|down_3|NZ_AP017308.1_3148940_3149192_-,cmr5gr11|141aa|down_4|NZ_AP017308.1_3151320_3151743_-,NA|108aa|down_8|NZ_AP017308.1_3155355_3155679_-,NA|145aa|down_9|NZ_AP017308.1_3155731_3156166_+	NA|246aa|up_9|NZ_AP017308.1_3138967_3139705_+	NA	NA|470aa|up_8|NZ_AP017308.1_3139778_3141188_+	NA	NA|349aa|up_7|NZ_AP017308.1_3141592_3142639_+	cd10227, ParM_like, Plasmid segregation protein ParM and similar proteins	NA|90aa|up_6|NZ_AP017308.1_3142638_3142908_+	NA	NA|72aa|up_5|NZ_AP017308.1_3143178_3143394_+	NA	NA|209aa|up_4|NZ_AP017308.1_3143471_3144098_-	NA	NA|202aa|up_3|NZ_AP017308.1_3145246_3145852_-	NA	NA|119aa|up_2|NZ_AP017308.1_3145844_3146201_-	NA	NA|71aa|up_1|NZ_AP017308.1_3146206_3146419_-	NA	NA|154aa|up_0|NZ_AP017308.1_3146476_3146938_-	NA	NA|64aa|down_0|NZ_AP017308.1_3147856_3148048_-	NA	NA|80aa|down_1|NZ_AP017308.1_3148242_3148482_-	pfam11103, DUF2887, Protein of unknown function (DUF2887)	NA|133aa|down_2|NZ_AP017308.1_3148545_3148944_-	cd09874, PIN_MT3492-like, VapC-like PIN domain of the hypothetical protein MT3492 of Mycobacterium tuberculosis CDC1551 and other uncharacterized, annotated PilT protein domain proteins	NA|84aa|down_3|NZ_AP017308.1_3148940_3149192_-	NA	cmr5gr11|141aa|down_4|NZ_AP017308.1_3151320_3151743_-	NA	cmr4gr7|271aa|down_5|NZ_AP017308.1_3151745_3152558_-	COG1336, COG1336, CRISPR system related protein, RAMP superfamily [Defense mechanisms]	cmr3gr5|354aa|down_6|NZ_AP017308.1_3152589_3153651_-	pfam09700, Cas_Cmr3, CRISPR-associated protein (Cas_Cmr3)	cas10|562aa|down_7|NZ_AP017308.1_3153643_3155329_-	cd09679, Cas10_III, CRISPR/Cas system-associated protein Cas10	NA|108aa|down_8|NZ_AP017308.1_3155355_3155679_-	NA	NA|145aa|down_9|NZ_AP017308.1_3155731_3156166_+	NA
GCF_001548435.1_ASM154843v1	NZ_AP017308	Leptolyngbya sp. NIES-3755 DNA, complete genome	8	3147939-3148195	3,4	CRT,PILER-CR	no	cmr5gr11,cmr4gr7,cmr3gr5,cas10,cas14j	PD-DExK,csa3,Cas14u_CAS-V,cas14j,cas3,DEDDh,cmr5gr11,cmr4gr7,cmr3gr5,cas10,WYL,cas10d,csc2gr7,csc1gr5,cas6,cas4,cas1,cas2,c2c5_V-U5,cas14k,c2c9_V-U4,Cas9_archaeal,DinG	Type III-B,Type III-D,Type III-A,Type III-C	GTTTCCAACTAATCCGATCGCAAAGGATCG,AGTTTCCAACTAATCCGATCGCAAAGGATCGACGTAAG	30,38	0	0	NA	NA	NA:NA	3,2	3	TypeV,TypeIII-B,TypeIII-D,TypeIII-A,TypeIII-C	PD-DExK,csa3,Cas14u_CAS-V,cas14j,cas3,DEDDh,cmr5gr11,cmr4gr7,cmr3gr5,cas10,WYL,cas10d,csc2gr7,csc1gr5,cas6,cas4,cas1,cas2,c2c5_V-U5,cas14k,c2c9_V-U4,Cas9_archaeal,DinG,RT	NA|246aa|up_9|NZ_AP017308.1_3138967_3139705_+,NA|470aa|up_8|NZ_AP017308.1_3139778_3141188_+,NA|90aa|up_6|NZ_AP017308.1_3142638_3142908_+,NA|72aa|up_5|NZ_AP017308.1_3143178_3143394_+,NA|209aa|up_4|NZ_AP017308.1_3143471_3144098_-,NA|202aa|up_3|NZ_AP017308.1_3145246_3145852_-,NA|119aa|up_2|NZ_AP017308.1_3145844_3146201_-,NA|71aa|up_1|NZ_AP017308.1_3146206_3146419_-,NA|154aa|up_0|NZ_AP017308.1_3146476_3146938_-,NA|84aa|down_2|NZ_AP017308.1_3148940_3149192_-,cmr5gr11|141aa|down_3|NZ_AP017308.1_3151320_3151743_-,NA|108aa|down_7|NZ_AP017308.1_3155355_3155679_-,NA|145aa|down_8|NZ_AP017308.1_3155731_3156166_+	NA|246aa|up_9|NZ_AP017308.1_3138967_3139705_+	NA	NA|470aa|up_8|NZ_AP017308.1_3139778_3141188_+	NA	NA|349aa|up_7|NZ_AP017308.1_3141592_3142639_+	cd10227, ParM_like, Plasmid segregation protein ParM and similar proteins	NA|90aa|up_6|NZ_AP017308.1_3142638_3142908_+	NA	NA|72aa|up_5|NZ_AP017308.1_3143178_3143394_+	NA	NA|209aa|up_4|NZ_AP017308.1_3143471_3144098_-	NA	NA|202aa|up_3|NZ_AP017308.1_3145246_3145852_-	NA	NA|119aa|up_2|NZ_AP017308.1_3145844_3146201_-	NA	NA|71aa|up_1|NZ_AP017308.1_3146206_3146419_-	NA	NA|154aa|up_0|NZ_AP017308.1_3146476_3146938_-	NA	NA|80aa|down_0|NZ_AP017308.1_3148242_3148482_-	pfam11103, DUF2887, Protein of unknown function (DUF2887)	NA|133aa|down_1|NZ_AP017308.1_3148545_3148944_-	cd09874, PIN_MT3492-like, VapC-like PIN domain of the hypothetical protein MT3492 of Mycobacterium tuberculosis CDC1551 and other uncharacterized, annotated PilT protein domain proteins	NA|84aa|down_2|NZ_AP017308.1_3148940_3149192_-	NA	cmr5gr11|141aa|down_3|NZ_AP017308.1_3151320_3151743_-	NA	cmr4gr7|271aa|down_4|NZ_AP017308.1_3151745_3152558_-	COG1336, COG1336, CRISPR system related protein, RAMP superfamily [Defense mechanisms]	cmr3gr5|354aa|down_5|NZ_AP017308.1_3152589_3153651_-	pfam09700, Cas_Cmr3, CRISPR-associated protein (Cas_Cmr3)	cas10|562aa|down_6|NZ_AP017308.1_3153643_3155329_-	cd09679, Cas10_III, CRISPR/Cas system-associated protein Cas10	NA|108aa|down_7|NZ_AP017308.1_3155355_3155679_-	NA	NA|145aa|down_8|NZ_AP017308.1_3155731_3156166_+	NA	NA|148aa|down_9|NZ_AP017308.1_3156174_3156618_+	cd09881, PIN_VapC4-5_FitB-like, VapC-like PIN domain of Mycobacterium tuberculosis VapC4 and VapC5, and Neisseria gonorrhoeae FitB and related proteins
GCF_001548435.1_ASM154843v1	NZ_AP017308	Leptolyngbya sp. NIES-3755 DNA, complete genome	9	3149255-3149652	4,5	CRT,PILER-CR	no	cmr5gr11,cmr4gr7,cmr3gr5,cas10,cas14j	PD-DExK,csa3,Cas14u_CAS-V,cas14j,cas3,DEDDh,cmr5gr11,cmr4gr7,cmr3gr5,cas10,WYL,cas10d,csc2gr7,csc1gr5,cas6,cas4,cas1,cas2,c2c5_V-U5,cas14k,c2c9_V-U4,Cas9_archaeal,DinG	Type III-B,Type III-D,Type III-A,Type III-C	GTTTCCAACTAATCCGATCGCAAANGATCGGNGCAAG,GTTTCCAACTAATCCGATCGCAAAGGATCGGCGCAAG	37,37	0	0	NA	NA	NA:NA	5,3	5	TypeV,TypeIII-B,TypeIII-D,TypeIII-A,TypeIII-C	PD-DExK,csa3,Cas14u_CAS-V,cas14j,cas3,DEDDh,cmr5gr11,cmr4gr7,cmr3gr5,cas10,WYL,cas10d,csc2gr7,csc1gr5,cas6,cas4,cas1,cas2,c2c5_V-U5,cas14k,c2c9_V-U4,Cas9_archaeal,DinG,RT	NA|72aa|up_9|NZ_AP017308.1_3143178_3143394_+,NA|209aa|up_8|NZ_AP017308.1_3143471_3144098_-,NA|202aa|up_7|NZ_AP017308.1_3145246_3145852_-,NA|119aa|up_6|NZ_AP017308.1_3145844_3146201_-,NA|71aa|up_5|NZ_AP017308.1_3146206_3146419_-,NA|154aa|up_4|NZ_AP017308.1_3146476_3146938_-,NA|64aa|up_3|NZ_AP017308.1_3147856_3148048_-,NA|84aa|up_0|NZ_AP017308.1_3148940_3149192_-,cmr5gr11|141aa|down_0|NZ_AP017308.1_3151320_3151743_-,NA|108aa|down_4|NZ_AP017308.1_3155355_3155679_-,NA|145aa|down_5|NZ_AP017308.1_3155731_3156166_+,NA|153aa|down_7|NZ_AP017308.1_3156725_3157184_-,NA|43aa|down_9|NZ_AP017308.1_3159642_3159771_+	NA|72aa|up_9|NZ_AP017308.1_3143178_3143394_+	NA	NA|209aa|up_8|NZ_AP017308.1_3143471_3144098_-	NA	NA|202aa|up_7|NZ_AP017308.1_3145246_3145852_-	NA	NA|119aa|up_6|NZ_AP017308.1_3145844_3146201_-	NA	NA|71aa|up_5|NZ_AP017308.1_3146206_3146419_-	NA	NA|154aa|up_4|NZ_AP017308.1_3146476_3146938_-	NA	NA|64aa|up_3|NZ_AP017308.1_3147856_3148048_-	NA	NA|80aa|up_2|NZ_AP017308.1_3148242_3148482_-	pfam11103, DUF2887, Protein of unknown function (DUF2887)	NA|133aa|up_1|NZ_AP017308.1_3148545_3148944_-	cd09874, PIN_MT3492-like, VapC-like PIN domain of the hypothetical protein MT3492 of Mycobacterium tuberculosis CDC1551 and other uncharacterized, annotated PilT protein domain proteins	NA|84aa|up_0|NZ_AP017308.1_3148940_3149192_-	NA	cmr5gr11|141aa|down_0|NZ_AP017308.1_3151320_3151743_-	NA	cmr4gr7|271aa|down_1|NZ_AP017308.1_3151745_3152558_-	COG1336, COG1336, CRISPR system related protein, RAMP superfamily [Defense mechanisms]	cmr3gr5|354aa|down_2|NZ_AP017308.1_3152589_3153651_-	pfam09700, Cas_Cmr3, CRISPR-associated protein (Cas_Cmr3)	cas10|562aa|down_3|NZ_AP017308.1_3153643_3155329_-	cd09679, Cas10_III, CRISPR/Cas system-associated protein Cas10	NA|108aa|down_4|NZ_AP017308.1_3155355_3155679_-	NA	NA|145aa|down_5|NZ_AP017308.1_3155731_3156166_+	NA	NA|148aa|down_6|NZ_AP017308.1_3156174_3156618_+	cd09881, PIN_VapC4-5_FitB-like, VapC-like PIN domain of Mycobacterium tuberculosis VapC4 and VapC5, and Neisseria gonorrhoeae FitB and related proteins	NA|153aa|down_7|NZ_AP017308.1_3156725_3157184_-	NA	cas14j|375aa|down_8|NZ_AP017308.1_3158481_3159606_-	COG0675, COG0675, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|43aa|down_9|NZ_AP017308.1_3159642_3159771_+	NA
GCF_001548435.1_ASM154843v1	NZ_AP017308	Leptolyngbya sp. NIES-3755 DNA, complete genome	10	3155436-3155691	8,6	CRISPRCasFinder,PILER-CR	no	cmr5gr11,cmr4gr7,cmr3gr5,cas10,cas14j	PD-DExK,csa3,Cas14u_CAS-V,cas14j,cas3,DEDDh,cmr5gr11,cmr4gr7,cmr3gr5,cas10,WYL,cas10d,csc2gr7,csc1gr5,cas6,cas4,cas1,cas2,c2c5_V-U5,cas14k,c2c9_V-U4,Cas9_archaeal,DinG	Type III-B,Type III-D,Type III-A,Type III-C	AGCTTGCGCCGATCCTTTGAGATCGGATTAGTTGGAAACG,CGTTTCCAACTAATCCGATCTCAAAGGATCGGCGCAA	40,37	0	0	NA	NA	NA:NA	3,2	3	TypeV,TypeIII-B,TypeIII-D,TypeIII-A,TypeIII-C	PD-DExK,csa3,Cas14u_CAS-V,cas14j,cas3,DEDDh,cmr5gr11,cmr4gr7,cmr3gr5,cas10,WYL,cas10d,csc2gr7,csc1gr5,cas6,cas4,cas1,cas2,c2c5_V-U5,cas14k,c2c9_V-U4,Cas9_archaeal,DinG,RT	NA|71aa|up_9|NZ_AP017308.1_3146206_3146419_-,NA|154aa|up_8|NZ_AP017308.1_3146476_3146938_-,NA|64aa|up_7|NZ_AP017308.1_3147856_3148048_-,NA|84aa|up_4|NZ_AP017308.1_3148940_3149192_-,cmr5gr11|141aa|up_3|NZ_AP017308.1_3151320_3151743_-,NA|145aa|down_0|NZ_AP017308.1_3155731_3156166_+,NA|153aa|down_2|NZ_AP017308.1_3156725_3157184_-,NA|43aa|down_4|NZ_AP017308.1_3159642_3159771_+,NA|142aa|down_6|NZ_AP017308.1_3161434_3161860_-,NA|967aa|down_8|NZ_AP017308.1_3163227_3166128_+,NA|125aa|down_9|NZ_AP017308.1_3166218_3166593_+	NA|71aa|up_9|NZ_AP017308.1_3146206_3146419_-	NA	NA|154aa|up_8|NZ_AP017308.1_3146476_3146938_-	NA	NA|64aa|up_7|NZ_AP017308.1_3147856_3148048_-	NA	NA|80aa|up_6|NZ_AP017308.1_3148242_3148482_-	pfam11103, DUF2887, Protein of unknown function (DUF2887)	NA|133aa|up_5|NZ_AP017308.1_3148545_3148944_-	cd09874, PIN_MT3492-like, VapC-like PIN domain of the hypothetical protein MT3492 of Mycobacterium tuberculosis CDC1551 and other uncharacterized, annotated PilT protein domain proteins	NA|84aa|up_4|NZ_AP017308.1_3148940_3149192_-	NA	cmr5gr11|141aa|up_3|NZ_AP017308.1_3151320_3151743_-	NA	cmr4gr7|271aa|up_2|NZ_AP017308.1_3151745_3152558_-	COG1336, COG1336, CRISPR system related protein, RAMP superfamily [Defense mechanisms]	cmr3gr5|354aa|up_1|NZ_AP017308.1_3152589_3153651_-	pfam09700, Cas_Cmr3, CRISPR-associated protein (Cas_Cmr3)	cas10|562aa|up_0|NZ_AP017308.1_3153643_3155329_-	cd09679, Cas10_III, CRISPR/Cas system-associated protein Cas10	NA|145aa|down_0|NZ_AP017308.1_3155731_3156166_+	NA	NA|148aa|down_1|NZ_AP017308.1_3156174_3156618_+	cd09881, PIN_VapC4-5_FitB-like, VapC-like PIN domain of Mycobacterium tuberculosis VapC4 and VapC5, and Neisseria gonorrhoeae FitB and related proteins	NA|153aa|down_2|NZ_AP017308.1_3156725_3157184_-	NA	cas14j|375aa|down_3|NZ_AP017308.1_3158481_3159606_-	COG0675, COG0675, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|43aa|down_4|NZ_AP017308.1_3159642_3159771_+	NA	NA|160aa|down_5|NZ_AP017308.1_3160927_3161407_-	cd00397, DNA_BRE_C, DNA breaking-rejoining enzymes, C-terminal catalytic domain	NA|142aa|down_6|NZ_AP017308.1_3161434_3161860_-	NA	NA|374aa|down_7|NZ_AP017308.1_3162121_3163243_+	pfam01609, DDE_Tnp_1, Transposase DDE domain	NA|967aa|down_8|NZ_AP017308.1_3163227_3166128_+	NA	NA|125aa|down_9|NZ_AP017308.1_3166218_3166593_+	NA
GCF_001548435.1_ASM154843v1	NZ_AP017308	Leptolyngbya sp. NIES-3755 DNA, complete genome	11	3479425-3479608	9	CRISPRCasFinder	no	WYL,cas3,cas10d,csc2gr7,csc1gr5,cas6,cas4,cas1,cas2	PD-DExK,csa3,Cas14u_CAS-V,cas14j,cas3,DEDDh,cmr5gr11,cmr4gr7,cmr3gr5,cas10,WYL,cas10d,csc2gr7,csc1gr5,cas6,cas4,cas1,cas2,c2c5_V-U5,cas14k,c2c9_V-U4,Cas9_archaeal,DinG	Type I-D	CTTTCGCGACTGCTAATCCCGGCAACGGGACTGAAAC	37	0	0	NA	NA	NA	2	2	TypeI-D	PD-DExK,csa3,Cas14u_CAS-V,cas14j,cas3,DEDDh,cmr5gr11,cmr4gr7,cmr3gr5,cas10,WYL,cas10d,csc2gr7,csc1gr5,cas6,cas4,cas1,cas2,c2c5_V-U5,cas14k,c2c9_V-U4,Cas9_archaeal,DinG,RT	NA,NA|73aa|down_1|NZ_AP017308.1_3480403_3480622_-,NA|149aa|down_3|NZ_AP017308.1_3482022_3482469_-,NA|114aa|down_6|NZ_AP017308.1_3485373_3485715_+,NA|94aa|down_9|NZ_AP017308.1_3488344_3488626_-	NA|231aa|up_9|NZ_AP017308.1_3469840_3470533_+	pfam18765, Polbeta, Polymerase beta, Nucleotidyltransferase	NA|154aa|up_8|NZ_AP017308.1_3470529_3470991_+	pfam01934, DUF86, Protein of unknown function DUF86	cas10d|1115aa|up_7|NZ_AP017308.1_3470974_3474319_+	TIGR03174, cas_Csc3, CRISPR type I-D/CYANO-associated protein Csc3/Cas10d	csc2gr7|336aa|up_6|NZ_AP017308.1_3474329_3475337_+	pfam18320, Csc2, Csc2 Crispr	csc1gr5|236aa|up_5|NZ_AP017308.1_3475343_3476051_+	cd09711, Csc1_I-D, CRISPR/Cas system-associated protein Csc1	cas6|267aa|up_4|NZ_AP017308.1_3476054_3476855_+	COG5551, COG5551, CRISPR system related protein, RAMP superfamily [Defense    mechanisms]	cas4|193aa|up_3|NZ_AP017308.1_3476851_3477430_+	TIGR00372, conserved_hypothetical_protein, CRISPR-associated protein Cas4	cas1|326aa|up_2|NZ_AP017308.1_3477431_3478409_+	TIGR04093, hypothetical_protein_L8106_25395, CRISPR-associated endonuclease Cas1, subtype CYANO	NA|125aa|up_1|NZ_AP017308.1_3478478_3478853_+	cd16377, 23S_rRNA_IVP_like, 23S rRNA-intervening sequence protein and similar proteins	cas2|116aa|up_0|NZ_AP017308.1_3478874_3479222_+	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2	NA|202aa|down_0|NZ_AP017308.1_3479697_3480303_-	NF033183, colliding_TM, low-complexity tail membrane protein	NA|73aa|down_1|NZ_AP017308.1_3480403_3480622_-	NA	NA|356aa|down_2|NZ_AP017308.1_3480901_3481969_+	PRK07409, PRK07409, threonine synthase; Validated	NA|149aa|down_3|NZ_AP017308.1_3482022_3482469_-	NA	NA|372aa|down_4|NZ_AP017308.1_3482515_3483631_-	PRK09585, anmK, anhydro-N-acetylmuramic acid kinase; Reviewed	NA|332aa|down_5|NZ_AP017308.1_3483635_3484631_-	PRK00856, pyrB, aspartate carbamoyltransferase catalytic subunit	NA|114aa|down_6|NZ_AP017308.1_3485373_3485715_+	NA	NA|186aa|down_7|NZ_AP017308.1_3486445_3487003_-	pfam05685, Uma2, Putative restriction endonuclease	NA|284aa|down_8|NZ_AP017308.1_3487177_3488029_+	COG2852, COG2852, Very-short-patch-repair endonuclease [Replication, recombination,    and repair]	NA|94aa|down_9|NZ_AP017308.1_3488344_3488626_-	NA
GCF_001548435.1_ASM154843v1	NZ_AP017308	Leptolyngbya sp. NIES-3755 DNA, complete genome	12	3530172-3530276	10	CRISPRCasFinder	no	cas14j,csa3	PD-DExK,csa3,Cas14u_CAS-V,cas14j,cas3,DEDDh,cmr5gr11,cmr4gr7,cmr3gr5,cas10,WYL,cas10d,csc2gr7,csc1gr5,cas6,cas4,cas1,cas2,c2c5_V-U5,cas14k,c2c9_V-U4,Cas9_archaeal,DinG	Type I-A	GGTGGAAAGGGGAAAGACTCGAACT	25	0	0	NA	NA	NA	1	1	TypeV,TypeI-A	PD-DExK,csa3,Cas14u_CAS-V,cas14j,cas3,DEDDh,cmr5gr11,cmr4gr7,cmr3gr5,cas10,WYL,cas10d,csc2gr7,csc1gr5,cas6,cas4,cas1,cas2,c2c5_V-U5,cas14k,c2c9_V-U4,Cas9_archaeal,DinG,RT	NA|149aa|up_9|NZ_AP017308.1_3520757_3521204_+,NA|179aa|up_8|NZ_AP017308.1_3521196_3521733_+,NA|69aa|down_5|NZ_AP017308.1_3537912_3538119_+,NA|106aa|down_9|NZ_AP017308.1_3543145_3543463_+	NA|149aa|up_9|NZ_AP017308.1_3520757_3521204_+	NA	NA|179aa|up_8|NZ_AP017308.1_3521196_3521733_+	NA	cas14j|415aa|up_7|NZ_AP017308.1_3521960_3523205_+	COG0675, COG0675, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|250aa|up_6|NZ_AP017308.1_3523821_3524571_-	COG3645, COG3645, Uncharacterized phage-encoded protein [Function unknown]	NA|54aa|up_5|NZ_AP017308.1_3524632_3524794_-	COG3905, COG3905, Predicted transcriptional regulator [Transcription]	NA|401aa|up_4|NZ_AP017308.1_3524922_3526125_-	cd01189, INT_ICEBs1_C_like, C-terminal catalytic domain of integrases from bacterial phages and conjugate transposons	NA|210aa|up_3|NZ_AP017308.1_3526420_3527050_-	pfam05857, TraX, TraX protein	NA|192aa|up_2|NZ_AP017308.1_3527073_3527649_-	pfam03358, FMN_red, NADPH-dependent FMN reductase	NA|386aa|up_1|NZ_AP017308.1_3527683_3528841_-	cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily	NA|432aa|up_0|NZ_AP017308.1_3528847_3530143_-	COG1028, FabG, Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]	NA|837aa|down_0|NZ_AP017308.1_3530372_3532883_-	TIGR04075, Ser/Thr_phosphatase_family_protein, polynucleotide kinase-phosphatase	NA|454aa|down_1|NZ_AP017308.1_3532879_3534241_-	TIGR04074, Methyltransferase_type_12, 3' terminal RNA ribose 2'-O-methyltransferase Hen1	NA|351aa|down_2|NZ_AP017308.1_3534410_3535463_-	COG1611, COG1611, Predicted Rossmann fold nucleotide-binding protein [General function prediction only]	NA|117aa|down_3|NZ_AP017308.1_3535669_3536020_-	TIGR01068, Thioredoxin-like_protein_slr0233, thioredoxin	NA|388aa|down_4|NZ_AP017308.1_3536446_3537610_-	PRK08649, PRK08649, GuaB3 family IMP dehydrogenase-related protein	NA|69aa|down_5|NZ_AP017308.1_3537912_3538119_+	NA	NA|237aa|down_6|NZ_AP017308.1_3538139_3538850_-	pfam13649, Methyltransf_25, Methyltransferase domain	NA|326aa|down_7|NZ_AP017308.1_3539129_3540107_+	cd04187, DPM1_like_bac, Bacterial DPM1_like enzymes are related to eukaryotic DPM1	csa3|197aa|down_8|NZ_AP017308.1_3542453_3543044_-	COG3860, COG3860, Uncharacterized protein conserved in bacteria [Function unknown]	NA|106aa|down_9|NZ_AP017308.1_3543145_3543463_+	NA
GCF_001548435.1_ASM154843v1	NZ_AP017308	Leptolyngbya sp. NIES-3755 DNA, complete genome	13	4241978-4242117	11	CRISPRCasFinder	no		PD-DExK,csa3,Cas14u_CAS-V,cas14j,cas3,DEDDh,cmr5gr11,cmr4gr7,cmr3gr5,cas10,WYL,cas10d,csc2gr7,csc1gr5,cas6,cas4,cas1,cas2,c2c5_V-U5,cas14k,c2c9_V-U4,Cas9_archaeal,DinG	Orphan	TGCTTGAATTGATGAATGCTTGAACTGTGGTTCTAAGCCAC	41	0	0	NA	NA	NA	1	1	Orphan	PD-DExK,csa3,Cas14u_CAS-V,cas14j,cas3,DEDDh,cmr5gr11,cmr4gr7,cmr3gr5,cas10,WYL,cas10d,csc2gr7,csc1gr5,cas6,cas4,cas1,cas2,c2c5_V-U5,cas14k,c2c9_V-U4,Cas9_archaeal,DinG,RT	NA|137aa|up_0|NZ_AP017308.1_4241528_4241939_+,NA|220aa|down_0|NZ_AP017308.1_4242376_4243036_+,NA|113aa|down_6|NZ_AP017308.1_4247586_4247925_+,NA|65aa|down_9|NZ_AP017308.1_4250436_4250631_+	NA|329aa|up_9|NZ_AP017308.1_4234304_4235291_+	cd01172, RfaE_like, RfaE encodes a bifunctional ADP-heptose synthase involved in the biosynthesis of the lipopolysaccharide (LPS) core precursor ADP-L-glycero-D-manno-heptose	NA|362aa|up_8|NZ_AP017308.1_4235268_4236354_+	COG0859, RfaF, ADP-heptose:LPS heptosyltransferase [Cell envelope biogenesis, outer membrane]	NA|90aa|up_7|NZ_AP017308.1_4236479_4236749_+	COG2261, COG2261, Predicted membrane protein [Function unknown]	NA|83aa|up_6|NZ_AP017308.1_4236848_4237097_-	cd12399, RRM_HP0827_like, RNA recognition motif in Helicobacter pylori HP0827 protein and similar proteins	NA|490aa|up_5|NZ_AP017308.1_4237404_4238874_-	TIGR02732, Zeta-carotene_desaturase, 9,9'-di-cis-zeta-carotene desaturase	NA|223aa|up_4|NZ_AP017308.1_4238924_4239593_+	NF033186, internalin_K, class 1 internalin InlK	NA|181aa|up_3|NZ_AP017308.1_4239770_4240313_-	pfam01243, Putative_PNPOx, Pyridoxamine 5'-phosphate oxidase	NA|67aa|up_2|NZ_AP017308.1_4240389_4240590_-	COG2608, CopZ, Copper chaperone [Inorganic ion transport and metabolism]	NA|207aa|up_1|NZ_AP017308.1_4240698_4241319_-	PRK00455, pyrE, orotate phosphoribosyltransferase; Validated	NA|137aa|up_0|NZ_AP017308.1_4241528_4241939_+	NA	NA|220aa|down_0|NZ_AP017308.1_4242376_4243036_+	NA	NA|469aa|down_1|NZ_AP017308.1_4243081_4244488_+	COG1253, TlyC, Hemolysins and related proteins containing CBS domains [General function prediction only]	NA|156aa|down_2|NZ_AP017308.1_4244474_4244942_-	PRK06302, PRK06302, acetyl-CoA carboxylase biotin carboxyl carrier protein	NA|188aa|down_3|NZ_AP017308.1_4245010_4245574_-	PRK00529, PRK00529, elongation factor P; Validated	NA|364aa|down_4|NZ_AP017308.1_4245699_4246791_+	cd01924, cyclophilin_TLP40_like, cyclophilin_TLP40_like: cyclophilin-type peptidylprolyl cis- trans isomerases (cyclophilins) similar ot the Spinach thylakoid lumen protein TLP40	NA|207aa|down_5|NZ_AP017308.1_4246831_4247452_-	pfam04313, HSDR_N, Type I restriction enzyme R protein N-terminus (HSDR_N)	NA|113aa|down_6|NZ_AP017308.1_4247586_4247925_+	NA	NA|140aa|down_7|NZ_AP017308.1_4247921_4248341_+	cd09881, PIN_VapC4-5_FitB-like, VapC-like PIN domain of Mycobacterium tuberculosis VapC4 and VapC5, and Neisseria gonorrhoeae FitB and related proteins	NA|603aa|down_8|NZ_AP017308.1_4248486_4250295_+	pfam13676, TIR_2, TIR domain	NA|65aa|down_9|NZ_AP017308.1_4250436_4250631_+	NA
GCF_001548435.1_ASM154843v1	NZ_AP017308	Leptolyngbya sp. NIES-3755 DNA, complete genome	14	4661158-4661265	12	CRISPRCasFinder	no	cas14j	PD-DExK,csa3,Cas14u_CAS-V,cas14j,cas3,DEDDh,cmr5gr11,cmr4gr7,cmr3gr5,cas10,WYL,cas10d,csc2gr7,csc1gr5,cas6,cas4,cas1,cas2,c2c5_V-U5,cas14k,c2c9_V-U4,Cas9_archaeal,DinG	Unclear	GATCTAACCTGGTTTGTTATAAAA	24	0	0	NA	NA	NA	1	1	TypeV	PD-DExK,csa3,Cas14u_CAS-V,cas14j,cas3,DEDDh,cmr5gr11,cmr4gr7,cmr3gr5,cas10,WYL,cas10d,csc2gr7,csc1gr5,cas6,cas4,cas1,cas2,c2c5_V-U5,cas14k,c2c9_V-U4,Cas9_archaeal,DinG,RT	NA|71aa|up_3|NZ_AP017308.1_4657068_4657281_+,NA	NA|694aa|up_9|NZ_AP017308.1_4650674_4652756_+	PRK07376, PRK07376, NADH-quinone oxidoreductase subunit L	NA|526aa|up_8|NZ_AP017308.1_4652905_4654483_+	PRK02546, PRK02546, NAD(P)H-quinone oxidoreductase subunit 4; Provisional	NA|67aa|up_7|NZ_AP017308.1_4654644_4654845_+	pfam02604, PhdYeFM_antitox, Antitoxin Phd_YefM, type II toxin-antitoxin system	NA|228aa|up_6|NZ_AP017308.1_4654895_4655579_-	pfam04298, Zn_peptidase_2, Putative neutral zinc metallopeptidase	NA|240aa|up_5|NZ_AP017308.1_4655803_4656523_+	COG1713, COG1713, Predicted HD superfamily hydrolase involved in NAD metabolism [Coenzyme metabolism]	NA|135aa|up_4|NZ_AP017308.1_4656523_4656928_+	pfam02410, RsfS, Ribosomal silencing factor during starvation	NA|71aa|up_3|NZ_AP017308.1_4657068_4657281_+	NA	NA|108aa|up_2|NZ_AP017308.1_4657252_4657576_+	COG2337, MazF, Growth inhibitor [Signal transduction mechanisms]	NA|465aa|up_1|NZ_AP017308.1_4657890_4659285_-	cd16943, HATPase_AtoS-like, Histidine kinase-like ATPase domain of two-component sensor histidine kinases similar to Escherichia coli K-12 AtoS	NA|552aa|up_0|NZ_AP017308.1_4659378_4661034_+	cd17595, REC_TrxB, phosphoacceptor receiver (REC) domain a fused response regulator with a thioredoxin reductase output domain	NA|386aa|down_0|NZ_AP017308.1_4661346_4662504_+	COG0665, DadA, Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]	NA|188aa|down_1|NZ_AP017308.1_4662500_4663064_-	pfam05685, Uma2, Putative restriction endonuclease	NA|300aa|down_2|NZ_AP017308.1_4663106_4664006_-	pfam12146, Hydrolase_4, Serine aminopeptidase, S33	NA|83aa|down_3|NZ_AP017308.1_4664095_4664344_-	pfam03683, UPF0175, Uncharacterized protein family (UPF0175)	NA|341aa|down_4|NZ_AP017308.1_4664518_4665541_-	COG4127, COG4127, Uncharacterized conserved protein [Function unknown]	NA|362aa|down_5|NZ_AP017308.1_4665678_4666764_-	PRK09354, recA, recombinase A; Provisional	NA|417aa|down_6|NZ_AP017308.1_4666925_4668176_+	TIGR00237, exodeoxyribonuclease_VII_large_subunit, exodeoxyribonuclease VII, large subunit	NA|85aa|down_7|NZ_AP017308.1_4668201_4668456_+	pfam02609, Exonuc_VII_S, Exonuclease VII small subunit	NA|386aa|down_8|NZ_AP017308.1_4668492_4669650_-	cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment	NA|327aa|down_9|NZ_AP017308.1_4669780_4670761_-	COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms]
GCF_001548435.1_ASM154843v1	NZ_AP017311	Leptolyngbya sp. NIES-3755 plasmid plasmid3 DNA, complete sequence	1	78011-78084	1	CRISPRCasFinder	no	PD-DExK	PD-DExK	Unclear	GAAGCGTGAATACTGGTATTCGC	23	0	0	NA	NA	NA	1	1	Orphan	PD-DExK,csa3,Cas14u_CAS-V,cas14j,cas3,DEDDh,cmr5gr11,cmr4gr7,cmr3gr5,cas10,WYL,cas10d,csc2gr7,csc1gr5,cas6,cas4,cas1,cas2,c2c5_V-U5,cas14k,c2c9_V-U4,Cas9_archaeal,DinG,RT	NA|208aa|up_6|NZ_AP017311.1_69345_69969_-,NA|116aa|up_5|NZ_AP017311.1_70134_70482_-,NA|558aa|up_4|NZ_AP017311.1_70486_72160_-,NA|412aa|up_2|NZ_AP017311.1_74768_76004_+,NA|174aa|down_0|NZ_AP017311.1_78210_78732_+,NA|74aa|down_1|NZ_AP017311.1_78805_79027_+,NA|81aa|down_5|NZ_AP017311.1_82271_82514_-,NA|65aa|down_6|NZ_AP017311.1_82909_83104_-	PD-DExK|348aa|up_9|NZ_AP017311.1_64131_65175_-	pfam06250, DUF1016, Protein of unknown function (DUF1016)	NA|280aa|up_8|NZ_AP017311.1_65238_66078_-	COG4279, COG4279, Uncharacterized conserved protein [Function unknown]	NA|1044aa|up_7|NZ_AP017311.1_66083_69215_-	COG0553, HepA, Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair]	NA|208aa|up_6|NZ_AP017311.1_69345_69969_-	NA	NA|116aa|up_5|NZ_AP017311.1_70134_70482_-	NA	NA|558aa|up_4|NZ_AP017311.1_70486_72160_-	NA	NA|480aa|up_3|NZ_AP017311.1_72982_74422_-	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins	NA|412aa|up_2|NZ_AP017311.1_74768_76004_+	NA	NA|329aa|up_1|NZ_AP017311.1_76142_77129_-	cd16393, SPO0J_N, Thermus thermophilus stage 0 sporulation protein J-like N-terminal domain, ParB family member	NA|230aa|up_0|NZ_AP017311.1_77121_77811_-	cd02042, ParAB_family, partition proteins ParAB family	NA|174aa|down_0|NZ_AP017311.1_78210_78732_+	NA	NA|74aa|down_1|NZ_AP017311.1_78805_79027_+	NA	NA|66aa|down_2|NZ_AP017311.1_78989_79187_+	pfam01863, DUF45, Protein of unknown function DUF45	NA|326aa|down_3|NZ_AP017311.1_79234_80212_-	PRK00236, xerC, site-specific tyrosine recombinase XerC; Reviewed	NA|271aa|down_4|NZ_AP017311.1_80236_81049_-	smart00475, 53EXOc, 5'-3' exonuclease	NA|81aa|down_5|NZ_AP017311.1_82271_82514_-	NA	NA|65aa|down_6|NZ_AP017311.1_82909_83104_-	NA	NA|89aa|down_7|NZ_AP017311.1_83516_83783_+	COG4974, XerD, Site-specific recombinase XerD [DNA replication, recombination, and repair]	NA|180aa|down_8|NZ_AP017311.1_83837_84377_+	pfam13808, DDE_Tnp_1_assoc, DDE_Tnp_1-associated	NA|189aa|down_9|NZ_AP017311.1_84348_84915_+	COG5433, COG5433, Transposase [DNA replication, recombination, and repair]
