The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_AP017320	Staphylococcus aureus strain MI	2860370	750130	757950	2860370		Hokovirus(16.67%)	10	NA	NA
WP_000244415.1|750130_751186_-	two-component system sensor histidine kinase SaeS	NA	A0A1V0SGX0	Hokovirus	29.8	3.6e-14
WP_000149344.1|751185_751872_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_001037807.1|751846_752320_-	DoxX family protein	NA	NA	NA	NA	NA
WP_001093562.1|752661_753102_-	DM13 domain-containing protein	NA	NA	NA	NA	NA
WP_000604990.1|753381_753966_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001062972.1|754064_754778_-	7-carboxy-7-deazaguanine synthase QueE	NA	A0A1U9WRB6	Streptococcus_virus	43.5	6.5e-52
WP_000941336.1|754781_755201_-	6-carboxytetrahydropterin synthase QueD	NA	S4U060	uncultured_phage	28.7	6.3e-07
WP_000446724.1|755202_755871_-	7-cyano-7-deazaguanine synthase QueC	NA	A0A2H4J8Q7	uncultured_Caudovirales_phage	57.5	9.6e-66
WP_000604514.1|756221_756815_+	aminodeoxychorismate/anthranilate synthase component II	NA	A0A0P0IKJ1	Acinetobacter_phage	42.9	4.4e-38
WP_001217796.1|756798_757950_+	anthranilate synthase component I family protein	NA	S4VNU7	Pandoravirus	35.7	6.0e-23
>prophage 2
NZ_AP017320	Staphylococcus aureus strain MI	2860370	769921	784562	2860370		uncultured_Caudovirales_phage(50.0%)	14	NA	NA
WP_000663030.1|769921_770980_+	histidinol-phosphate transaminase	NA	A0A1X6WGT4	Pacmanvirus	26.7	7.9e-22
WP_000197262.1|771318_771861_+	5'-3'-deoxyribonucleotidase	NA	NA	NA	NA	NA
WP_000429006.1|772739_773657_-	diacylglycerol kinase family lipid kinase	NA	A0A1V0SBJ0	Catovirus	22.0	2.1e-07
WP_031760357.1|773747_773849_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000193751.1|773926_775432_-	peptide MFS transporter	NA	A0A0P0IY73	Acinetobacter_phage	32.2	2.0e-58
WP_000930014.1|775772_776273_-	NADPH-dependent 7-cyano-7-deazaguanine reductase QueF	NA	E7DN65	Pneumococcus_phage	71.5	5.9e-52
WP_001068501.1|776292_777159_-	DMT family transporter	NA	NA	NA	NA	NA
WP_000692521.1|777959_778358_+	class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI	NA	A0A2H4J545	uncultured_Caudovirales_phage	72.0	1.2e-52
WP_000855514.1|778320_780426_+	class 1b ribonucleoside-diphosphate reductase subunit alpha	NA	A0A2H4J2N6	uncultured_Caudovirales_phage	91.7	0.0e+00
WP_000562498.1|780543_781515_+	class 1b ribonucleoside-diphosphate reductase subunit beta	NA	A0A2H4J4P3	uncultured_Caudovirales_phage	91.3	4.2e-171
WP_000499195.1|781695_781851_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000876318.1|781889_782861_+	ABC transporter permease	NA	A0A2H4IY97	uncultured_Caudovirales_phage	78.9	4.3e-139
WP_001245577.1|782847_783804_+	iron chelate uptake ABC transporter family permease subunit	NA	A0A2H4J116	uncultured_Caudovirales_phage	57.8	1.2e-05
WP_000616840.1|783800_784562_+	ABC transporter ATP-binding protein	NA	Q9EMR9	Amsacta_moorei_entomopoxvirus	31.6	6.5e-18
>prophage 3
NZ_AP017320	Staphylococcus aureus strain MI	2860370	870097	927028	2860370	capsid,portal,plate,holin,integrase,head,terminase,tail,transposase	Staphylococcus_phage(75.34%)	85	868194:868210	902848:902864
868194:868210	attL	GAAATTAGATAAAAACA	NA	NA	NA	NA
WP_001006450.1|870097_871348_+	cysteine desulfurase	NA	Q2XUY6	environmental_halophage	44.8	1.1e-110
WP_001010508.1|871337_871802_+	SUF system NifU family Fe-S cluster assembly protein	NA	NA	NA	NA	NA
WP_001074405.1|871952_873350_+	Fe-S cluster assembly protein SufB	NA	NA	NA	NA	NA
WP_001145727.1|873417_874467_-|integrase	site-specific integrase	integrase	A1KWY3	Staphylococcus_virus	99.4	1.7e-202
WP_000337826.1|874579_874759_+	hypothetical protein	NA	A0EWN7	Staphylococcus_virus	100.0	8.3e-25
WP_000392186.1|874738_875671_-	hypothetical protein	NA	A0EWN8	Staphylococcus_virus	100.0	3.9e-174
WP_000661437.1|875702_876428_-	PH domain-containing protein	NA	A0A0F6N4L7	Staphylococcus_phage	100.0	9.9e-125
WP_000775187.1|876455_877130_-	ImmA/IrrE family metallo-endopeptidase	NA	A0A0F6N3H6	Staphylococcus_phage	100.0	4.9e-126
WP_001055143.1|877146_877479_-	helix-turn-helix transcriptional regulator	NA	R4IH08	Staphylococcus_phage	100.0	4.1e-57
WP_000108122.1|877741_877936_+	helix-turn-helix transcriptional regulator	NA	A0A0F6N3M9	Staphylococcus_phage	100.0	1.1e-25
WP_001002753.1|877935_878703_+	phage antirepressor Ant	NA	A0A0F6N3N8	Staphylococcus_phage	99.6	4.3e-142
WP_000187184.1|878703_878928_+	hypothetical protein	NA	A0A0F6N4M2	Staphylococcus_phage	100.0	3.2e-34
WP_001094943.1|878967_879417_+	hypothetical protein	NA	A1KWZ2	Staphylococcus_virus	100.0	3.0e-79
WP_000977381.1|879430_879652_+	hypothetical protein	NA	A0A0F6N3I2	Staphylococcus_phage	100.0	1.5e-31
WP_000066011.1|879644_879806_+	DUF1270 domain-containing protein	NA	Q4ZAZ7	Staphylococcus_virus	100.0	2.5e-20
WP_000165363.1|879899_880202_+	DUF2482 family protein	NA	A0A0F6N3N3	Staphylococcus_phage	100.0	1.4e-48
WP_000291090.1|880206_880467_+	DUF1108 family protein	NA	Q4ZDA1	Staphylococcus_virus	100.0	1.2e-43
WP_000815401.1|880476_880698_+	DUF2483 family protein	NA	A7TWM6	Staphylococcus_phage	100.0	3.2e-34
WP_000139720.1|880690_881314_+	DUF1071 domain-containing protein	NA	A0A2H4PQQ6	Staphylococcus_phage	100.0	1.4e-114
WP_000934385.1|881313_881742_+	single-stranded DNA-binding protein	NA	B2ZYV4	Staphylococcus_phage	100.0	3.9e-60
WP_001124438.1|881755_882430_+	hypothetical protein	NA	R4IH15	Staphylococcus_phage	96.9	1.4e-125
WP_001081076.1|882426_882576_+	hypothetical protein	NA	A7TWN0	Staphylococcus_phage	100.0	2.4e-17
WP_000414755.1|882568_882850_-	hypothetical protein	NA	A0A1W6JPU7	Staphylococcus_phage	100.0	2.6e-49
WP_000190254.1|882915_883686_+	conserved phage C-terminal domain-containing protein	NA	G4KNP0	Staphylococcus_phage	100.0	6.4e-122
WP_000803062.1|883695_884475_+	ATP-binding protein	NA	G4KNP1	Staphylococcus_phage	100.0	3.8e-146
WP_000256589.1|884468_884627_+	hypothetical protein	NA	A0A2H4PQI7	Staphylococcus_phage	100.0	4.5e-22
WP_001123695.1|884639_884861_+	DUF3269 family protein	NA	A0A0H3U2V4	Staphylococcus_phage	100.0	2.2e-35
WP_000049794.1|884870_885275_+	DUF1064 domain-containing protein	NA	A1KX76	Staphylococcus_virus	100.0	9.6e-69
WP_001187243.1|885279_885465_+	DUF3113 family protein	NA	A0A0F6N3K7	Staphylococcus_phage	100.0	1.1e-27
WP_000101252.1|885465_885771_+	hypothetical protein	NA	A0A0F6N4H9	Staphylococcus_phage	100.0	1.7e-49
WP_000029376.1|885898_886255_+	hypothetical protein	NA	A0A0F6N3E3	Staphylococcus_phage	100.0	6.5e-61
WP_000131376.1|886258_886501_+	hypothetical protein	NA	A0A0F6N3E1	Staphylococcus_phage	98.8	1.9e-40
WP_001557190.1|886509_886881_+	hypothetical protein	NA	A0A0F6N3K4	Staphylococcus_phage	100.0	3.6e-54
WP_001065060.1|886873_887128_+	DUF1024 family protein	NA	A1KX15	Staphylococcus_virus	97.6	2.5e-38
WP_000714412.1|887114_887285_+	hypothetical protein	NA	A7TWH6	Staphylococcus_phage	91.1	1.5e-20
WP_000185647.1|887277_887811_+	dUTP pyrophosphatase	NA	A1KX16	Staphylococcus_virus	99.4	2.4e-96
WP_000617154.1|887847_888054_+	DUF1381 domain-containing protein	NA	A0A0H3U2R7	Staphylococcus_phage	72.1	1.0e-18
WP_000132921.1|888050_888245_+	hypothetical protein	NA	A0A2I6PEC2	Staphylococcus_phage	100.0	6.0e-29
WP_001072795.1|888241_888445_+	hypothetical protein	NA	A0A0N9BAX5	Staphylococcus_phage	100.0	5.2e-31
WP_000608278.1|888437_888674_+	hypothetical protein	NA	Q4ZDP0	Staphylococcus_virus	100.0	2.8e-36
WP_000595257.1|888666_888840_+	transcriptional activator RinB	NA	Q4ZBK0	Staphylococcus_phage	100.0	6.4e-22
WP_000990004.1|888840_888945_+	hypothetical protein	NA	B2ZYX7	Staphylococcus_phage	100.0	7.0e-08
WP_000162701.1|889010_889433_+	RinA family phage transcriptional activator	NA	A0A0F6N3E5	Staphylococcus_phage	100.0	1.2e-74
WP_001038244.1|889620_890115_+|terminase	terminase small subunit	terminase	A0A0F6N3K6	Staphylococcus_phage	100.0	7.8e-89
WP_000273011.1|890117_891413_+|terminase	PBSX family phage terminase large subunit	terminase	A0A0F6N3L3	Staphylococcus_phage	100.0	3.0e-257
WP_000909970.1|891423_892962_+|portal	phage portal protein	portal	A0A0F6N4I8	Staphylococcus_phage	100.0	2.4e-293
WP_001133044.1|892968_893964_+|capsid	minor capsid protein	capsid	A0A0F6N3F1	Staphylococcus_phage	100.0	2.0e-184
WP_000072208.1|894036_894207_+	hypothetical protein	NA	A0A0F6N3E9	Staphylococcus_phage	100.0	1.5e-23
WP_000392151.1|894315_894936_+	DUF4355 domain-containing protein	NA	S4V984	Staphylococcus_phage	98.5	1.7e-69
WP_000438511.1|894949_895924_+|capsid	phage major capsid protein	capsid	E0Y3L0	Staphylococcus_virus	100.0	2.2e-183
WP_001114086.1|895945_896233_+	hypothetical protein	NA	S4V6D9	Staphylococcus_phage	98.9	1.4e-45
WP_000208960.1|896241_896574_+|head,tail	phage head-tail connector protein	head,tail	A0A0F6N3F4	Staphylococcus_phage	100.0	5.5e-54
WP_001268312.1|896570_896873_+	hypothetical protein	NA	A4ZFB6	Staphylococcus_virus	100.0	1.1e-50
WP_001017815.1|896872_897220_+	HK97 gp10 family phage protein	NA	A0A0F6N3F5	Staphylococcus_phage	100.0	4.1e-60
WP_000188643.1|897231_897615_+	hypothetical protein	NA	E0Y3L5	Staphylococcus_virus	98.4	3.8e-67
WP_000002577.1|897633_898215_+|tail	phage major tail protein, TP901-1 family	tail	A0A0F6N3L8	Staphylococcus_phage	100.0	4.9e-106
WP_001100161.1|898276_898642_+	hypothetical protein	NA	A0A0F6N4J9	Staphylococcus_phage	100.0	3.6e-59
WP_000105584.1|898671_899016_+	hypothetical protein	NA	A0A0F6N3F7	Staphylococcus_phage	100.0	2.5e-57
WP_000141480.1|899032_902500_+	hypothetical protein	NA	A0A0F6N3F9	Staphylococcus_phage	100.0	4.2e-245
WP_000350675.1|902512_903460_+|tail	phage tail family protein	tail	A0A0F6N3L4	Staphylococcus_phage	100.0	2.8e-183
902848:902864	attR	GAAATTAGATAAAAACA	NA	NA	NA	NA
WP_000152714.1|903468_905370_+|tail	phage tail protein	tail	I1W634	Staphylococcus_phage	99.8	0.0e+00
WP_000369017.1|905384_907295_+	hypothetical protein	NA	Q4ZDD6	Staphylococcus_virus	98.9	0.0e+00
WP_000259620.1|907294_909118_+|plate	BppU family phage baseplate upper protein	plate	A1KX42	Staphylococcus_virus	99.0	2.0e-294
WP_000705896.1|909117_909495_+	DUF2977 domain-containing protein	NA	A0A0F6N3G4	Staphylococcus_phage	100.0	1.5e-60
WP_000782200.1|909498_909672_+	XkdX family protein	NA	A0A0F6N3L7	Staphylococcus_phage	100.0	6.6e-27
WP_000466778.1|909711_910011_+	DUF2951 domain-containing protein	NA	A0A0H4ITZ0	Staphylococcus_phage	100.0	7.6e-47
WP_000524022.1|910147_912046_+	glucosaminidase domain-containing protein	NA	A0EX80	Staphylococcus_virus	99.7	0.0e+00
WP_000276662.1|912058_913297_+|plate	BppU family phage baseplate upper protein	plate	A0A0F6N3G7	Staphylococcus_phage	100.0	1.6e-210
WP_000398868.1|913302_913698_+	hypothetical protein	NA	A1KXB6	Staphylococcus_virus	100.0	1.6e-68
WP_000351119.1|913753_914029_+|holin	phage holin	holin	A0A0F6N3M0	Staphylococcus_phage	100.0	8.6e-45
WP_001141517.1|914015_915428_+	N-acetylmuramoyl-L-alanine amidase	NA	A0A0F6N3N1	Staphylococcus_phage	100.0	5.8e-286
WP_001035620.1|915487_916045_-	DUF4888 domain-containing protein	NA	A0A0F6N4L1	Staphylococcus_phage	100.0	7.4e-96
WP_001788502.1|916419_916572_+	hypothetical protein	NA	A0A0F6N3H2	Staphylococcus_phage	100.0	3.1e-20
WP_000139423.1|916642_916753_+	hypothetical protein	NA	W5R8J7	Staphylococcus_phage	100.0	1.7e-12
WP_001286805.1|916754_916940_+	hypothetical protein	NA	A0A0F6N3H3	Staphylococcus_phage	100.0	2.7e-26
WP_000274029.1|917769_918084_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000582326.1|918448_919489_+	HlyC/CorC family transporter	NA	NA	NA	NA	NA
WP_000267236.1|919502_920570_+	nitronate monooxygenase	NA	NA	NA	NA	NA
WP_016170465.1|920823_920907_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000608129.1|920954_921803_+	DUF72 domain-containing protein	NA	NA	NA	NA	NA
WP_000927632.1|921815_922643_+	sulfite exporter TauE/SafE family protein	NA	NA	NA	NA	NA
WP_001241246.1|922669_923989_+	bifunctional metallophosphatase/5'-nucleotidase	NA	NA	NA	NA	NA
WP_000201875.1|924072_924990_+	lipoyl synthase	NA	NA	NA	NA	NA
WP_000598444.1|925119_925503_+	YutD family protein	NA	NA	NA	NA	NA
WP_001557163.1|925708_927028_+|transposase	ISL3-like element IS1181 family transposase	transposase	NA	NA	NA	NA
>prophage 4
NZ_AP017320	Staphylococcus aureus strain MI	2860370	1073597	1082070	2860370		Synechococcus_phage(33.33%)	9	NA	NA
WP_000861573.1|1073597_1074080_+	5-(carboxyamino)imidazole ribonucleotide mutase	NA	A0A2P0VNU7	Tetraselmis_virus	44.7	8.0e-22
WP_001010413.1|1074066_1075191_+	5-(carboxyamino)imidazole ribonucleotide synthase	NA	NA	NA	NA	NA
WP_000174053.1|1075194_1075899_+	phosphoribosylaminoimidazolesuccinocarboxamide synthase	NA	M4R1E8	Synechococcus_phage	42.1	7.3e-48
WP_000848350.1|1075898_1076162_+	phosphoribosylformylglycinamidine synthase subunit PurS	NA	NA	NA	NA	NA
WP_000666806.1|1076163_1076835_+	phosphoribosylformylglycinamidine synthase I	NA	NA	NA	NA	NA
WP_000032740.1|1076827_1079017_+	phosphoribosylformylglycinamidine synthase subunit PurL	NA	A6N228	Microbacterium_phage	39.8	3.5e-141
WP_000483720.1|1078995_1080480_+	amidophosphoribosyltransferase	NA	A0A0M3SGR2	Mollivirus	31.7	1.9e-45
WP_000030811.1|1080472_1081501_+	phosphoribosylformylglycinamidine cyclo-ligase	NA	Q58MH8	Prochlorococcus_phage	41.7	3.4e-62
WP_000238669.1|1081503_1082070_+	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	40.1	6.1e-29
>prophage 5
NZ_AP017320	Staphylococcus aureus strain MI	2860370	1523436	1610869	2860370	protease,tRNA,capsid,portal,plate,holin,integrase,head,terminase,tail	Staphylococcus_phage(72.15%)	108	1559713:1559741	1605263:1605291
WP_000858779.1|1523436_1524729_-|tRNA	asparagine--tRNA ligase	tRNA	M1PB22	Moumouvirus	31.3	8.7e-55
WP_000525078.1|1525050_1527744_-	ATP-dependent helicase DinG	NA	A0A1X9I5C8	Streptococcus_phage	34.4	8.2e-47
WP_000049921.1|1527767_1528739_-	biotin--[acetyl-CoA-carboxylase] ligase	NA	NA	NA	NA	NA
WP_000361540.1|1528725_1529928_-|tRNA	CCA tRNA nucleotidyltransferase	tRNA	H7BUW3	unidentified_phage	43.3	4.2e-35
WP_000690025.1|1529932_1531075_-	N-acetyl-alpha-D-glucosaminyl L-malate synthase BshA	NA	NA	NA	NA	NA
WP_031771730.1|1531318_1531636_-	nucleotide pyrophosphohydrolase	NA	NA	NA	NA	NA
WP_001827022.1|1531971_1532652_-	zinc metallopeptidase	NA	NA	NA	NA	NA
WP_000154683.1|1532723_1533311_-	DUF1405 domain-containing protein	NA	NA	NA	NA	NA
WP_000005212.1|1533300_1533876_-	YpiB family protein	NA	G3MAV7	Bacillus_virus	27.2	2.1e-08
WP_000389524.1|1533889_1535134_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000253231.1|1535140_1536439_-	3-phosphoshikimate 1-carboxyvinyltransferase	NA	NA	NA	NA	NA
WP_000776312.1|1536448_1537513_-	3-dehydroquinate synthase	NA	NA	NA	NA	NA
WP_001269921.1|1537538_1538705_-	chorismate synthase	NA	A0A291AU41	Pandoravirus	31.8	5.8e-34
WP_000789522.1|1539090_1539291_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000442480.1|1539499_1539949_-	nucleoside-diphosphate kinase	NA	D2E8E1	Anguillid_herpesvirus	43.8	2.4e-28
WP_001096471.1|1540040_1541000_-	polyprenyl synthetase family protein	NA	A0A1V0SE37	Indivirus	24.4	1.3e-10
WP_000774684.1|1541001_1541727_-	demethylmenaquinone methyltransferase	NA	NA	NA	NA	NA
WP_000450555.1|1541729_1542302_-	heptaprenyl diphosphate synthase component 1	NA	NA	NA	NA	NA
WP_001043863.1|1542732_1543005_-	HU family DNA-binding protein	NA	A7KV42	Bacillus_phage	73.3	4.2e-28
WP_000161745.1|1543175_1544174_-	NAD(P)H-dependent glycerol-3-phosphate dehydrogenase	NA	NA	NA	NA	NA
WP_000165530.1|1544190_1545501_-	ribosome biogenesis GTPase Der	NA	NA	NA	NA	NA
WP_000133961.1|1545722_1546898_-	30S ribosomal protein S1	NA	NA	NA	NA	NA
WP_001800578.1|1547154_1547346_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001795818.1|1547426_1547579_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000644391.1|1547609_1548269_-	(d)CMP kinase	NA	NA	NA	NA	NA
WP_000681757.1|1548345_1549314_+	asparaginase	NA	NA	NA	NA	NA
WP_001174258.1|1549428_1550415_-	YpdA family putative bacillithiol disulfide reductase	NA	NA	NA	NA	NA
WP_001792205.1|1550575_1550692_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000069291.1|1550816_1552277_-	elastin-binding protein EbpS	NA	NA	NA	NA	NA
WP_000902099.1|1552429_1553809_-	ATP-dependent DNA helicase RecQ	NA	A0A2P1EM61	Moumouvirus	33.6	1.4e-55
WP_001163801.1|1553798_1554752_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_001151997.1|1554859_1555108_+	ferredoxin	NA	A0A127AYY7	Bacillus_phage	48.0	8.3e-15
WP_001186912.1|1555213_1555759_-	ECF transporter S component	NA	NA	NA	NA	NA
WP_000913227.1|1556160_1557117_-	DUF1672 domain-containing protein	NA	NA	NA	NA	NA
WP_001557351.1|1557257_1557512_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000476354.1|1557587_1558484_-	DUF1672 domain-containing protein	NA	NA	NA	NA	NA
WP_000476865.1|1558541_1559447_-	DUF1672 domain-containing protein	NA	NA	NA	NA	NA
WP_000209712.1|1559536_1559752_-	hypothetical protein	NA	A0ZS61	Staphylococcus_virus	100.0	2.0e-25
1559713:1559741	attL	AAATAAACATATCATCATAATGTGATGGT	NA	NA	NA	NA
WP_000930258.1|1560473_1561928_-	N-acetylmuramoyl-L-alanine amidase	NA	A0A0N6WMR3	Staphylococcus_phage	100.0	3.0e-290
WP_000339146.1|1561939_1562242_-|holin	phage holin	holin	A0A2I6PET6	Staphylococcus_phage	100.0	7.0e-48
WP_000466784.1|1562377_1562677_-	DUF2951 domain-containing protein	NA	A0A2I6PER2	Staphylococcus_phage	100.0	2.0e-31
WP_000916020.1|1562722_1562887_-	XkdX family protein	NA	A0A2I6PES4	Staphylococcus_phage	100.0	4.9e-24
WP_001166599.1|1562879_1563269_-	DUF2977 domain-containing protein	NA	A0A2I6PER1	Staphylococcus_phage	100.0	2.2e-62
WP_000067122.1|1563268_1564735_-|plate	phage baseplate upper protein	plate	A0A2I6PES7	Staphylococcus_phage	99.4	2.9e-272
WP_000429558.1|1564734_1566645_-	minor structural protein	NA	A0A2I6PEQ9	Staphylococcus_phage	100.0	0.0e+00
WP_000179858.1|1566660_1566951_-	hypothetical protein	NA	U5U457	Staphylococcus_phage	100.0	2.1e-49
WP_000384474.1|1566950_1568534_-|tail	phage tail protein	tail	A0A2I6PEQ5	Staphylococcus_phage	100.0	9.3e-309
WP_001190530.1|1568542_1569367_-|tail	phage tail family protein	tail	A0A2I6PER3	Staphylococcus_phage	99.3	1.6e-158
WP_001003417.1|1569366_1575576_-|tail	phage tail tape measure protein	tail	A0A2I6PDS2	Staphylococcus_phage	98.4	0.0e+00
WP_000438833.1|1575589_1575748_-	hypothetical protein	NA	A0A2I6PES8	Staphylococcus_phage	100.0	1.2e-19
WP_000589167.1|1575789_1576140_-	hypothetical protein	NA	A0A2I6PEQ2	Staphylococcus_phage	100.0	1.1e-55
WP_000169127.1|1576197_1576653_-	Ig domain-containing protein	NA	A0A2I6PER6	Staphylococcus_phage	100.0	5.7e-78
WP_000807536.1|1576744_1577386_-|tail	tail protein	tail	A0A2I6PEP6	Staphylococcus_phage	100.0	5.9e-121
WP_001023806.1|1577420_1577816_-	DUF3168 domain-containing protein	NA	A0A2I6PEQ4	Staphylococcus_phage	100.0	8.8e-67
WP_000110023.1|1577816_1578218_-	hypothetical protein	NA	A0A2I6PF54	Staphylococcus_phage	100.0	8.1e-68
WP_000395498.1|1578214_1578547_-	hypothetical protein	NA	A0A2I6PES3	Staphylococcus_phage	100.0	4.1e-57
WP_000050973.1|1578558_1578837_-|head,tail	phage gp6-like head-tail connector protein	head,tail	A0A2I6PEQ1	Staphylococcus_phage	100.0	2.1e-46
WP_001142734.1|1578905_1580069_-|capsid	phage major capsid protein	capsid	A0A2I6PEQ3	Staphylococcus_phage	100.0	1.2e-217
WP_000061866.1|1580080_1580854_-|protease	Clp protease ClpP	protease	A0A2I6PEQ7	Staphylococcus_phage	100.0	2.4e-137
WP_001100669.1|1580837_1582076_-|portal	phage portal protein	portal	A0A2K9VBP0	Staphylococcus_phage	100.0	6.9e-235
WP_000153555.1|1582080_1583772_-|terminase	terminase large subunit	terminase	A0A2I6PE44	Staphylococcus_phage	100.0	0.0e+00
WP_000778932.1|1583761_1584067_-|terminase	P27 family phage terminase small subunit	terminase	A0A2I6PE27	Staphylococcus_phage	100.0	2.9e-49
WP_000160689.1|1584195_1584510_-	HNH endonuclease	NA	A0A2I6PDC4	Staphylococcus_phage	100.0	2.5e-56
WP_001802078.1|1585116_1586484_-	DEAD/DEAH box helicase	NA	A0A2I6PE95	Staphylococcus_phage	99.8	2.3e-263
WP_000665203.1|1586464_1586755_-	VRR-NUC domain-containing protein	NA	A0A2I6PEN7	Staphylococcus_phage	100.0	6.5e-51
WP_001802079.1|1586888_1586993_+	hypothetical protein	NA	Q4ZCF8	Staphylococcus_virus	94.1	1.0e-11
WP_000265258.1|1589594_1589795_-	DUF1514 family protein	NA	A0A2I6PF41	Staphylococcus_phage	100.0	2.9e-26
WP_000595272.1|1589862_1590015_-	transcriptional activator RinB	NA	Q9B0E9	Staphylococcus_virus	100.0	2.6e-19
WP_000483477.1|1590007_1590244_-	hypothetical protein	NA	A7TWB3	Staphylococcus_phage	100.0	1.9e-37
WP_001199737.1|1590268_1590502_-	DUF1381 domain-containing protein	NA	Q9B0F0	Staphylococcus_virus	100.0	3.1e-35
WP_001034430.1|1590501_1590702_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001106583.1|1590698_1590944_-	hypothetical protein	NA	Q9B0F1	Staphylococcus_virus	100.0	1.6e-31
WP_000185643.1|1590980_1591514_-	dUTP pyrophosphatase	NA	A0A059T5A7	Staphylococcus_phage	96.6	1.1e-91
WP_001065070.1|1591506_1591755_-	DUF1024 family protein	NA	Q9B0F3	Staphylococcus_virus	96.3	3.5e-37
WP_000144703.1|1591747_1592056_-	hypothetical protein	NA	Q6R826	Staphylococcus_virus	96.1	8.4e-49
WP_000979209.1|1592052_1592400_-	hypothetical protein	NA	D2JGL4	Staphylococcus_phage	100.0	5.9e-59
WP_000695756.1|1592396_1592801_-	hypothetical protein	NA	A0A0E3T8H9	Staphylococcus_phage	100.0	4.2e-72
WP_000693995.1|1592803_1593010_-	hypothetical protein	NA	A0A2K9VBT9	Staphylococcus_phage	98.5	8.7e-34
WP_073546265.1|1593023_1593272_-	hypothetical protein	NA	A0A2I6PDB4	Staphylococcus_phage	93.9	2.8e-39
WP_000022738.1|1593271_1593526_-	DUF3310 domain-containing protein	NA	Q6R831	Staphylococcus_virus	97.6	8.2e-42
WP_000029382.1|1593525_1593885_-	hypothetical protein	NA	Q4ZBU0	Staphylococcus_virus	95.8	1.2e-59
WP_001187249.1|1593885_1594071_-	DUF3113 family protein	NA	A0A0N9BBI1	Staphylococcus_phage	95.1	6.0e-26
WP_000152769.1|1594070_1594226_-	hypothetical protein	NA	A0A2I6PDP0	Staphylococcus_phage	94.1	3.5e-19
WP_075345100.1|1594237_1596190_-	DNA polymerase	NA	A0A2K9VBT3	Staphylococcus_phage	99.4	0.0e+00
WP_000645045.1|1596258_1596816_-	DUF2815 family protein	NA	A0A2K9VBT2	Staphylococcus_phage	100.0	1.8e-97
WP_000762546.1|1596841_1598008_-	DUF2800 domain-containing protein	NA	A0A0K1LKE3	Staphylococcus_phage	99.5	9.1e-221
WP_000985976.1|1598004_1598367_-	hypothetical protein	NA	A0A2I6PF03	Staphylococcus_phage	100.0	4.9e-56
WP_000174994.1|1598381_1598705_-	hypothetical protein	NA	A0A2I6PF12	Staphylococcus_phage	100.0	5.9e-53
WP_001285948.1|1598783_1598945_-	DUF1270 domain-containing protein	NA	A9CR58	Staphylococcus_phage	98.1	1.1e-20
WP_001124198.1|1598957_1599221_-	helix-turn-helix domain-containing protein	NA	A0A2I6PEL8	Staphylococcus_phage	100.0	2.5e-46
WP_001097552.1|1599247_1599463_-	hypothetical protein	NA	A0A2I6PF01	Staphylococcus_phage	100.0	1.9e-31
WP_001128433.1|1599517_1599883_+	hypothetical protein	NA	A0A2I6PF07	Staphylococcus_phage	100.0	2.4e-63
WP_001025401.1|1599851_1600097_-	DUF2829 domain-containing protein	NA	A0A2I6PF15	Staphylococcus_phage	100.0	5.1e-41
WP_000773059.1|1600163_1600544_+	DUF2513 domain-containing protein	NA	Q4ZCQ5	Staphylococcus_virus	100.0	5.8e-68
WP_001148860.1|1600530_1600728_-	hypothetical protein	NA	A7TWF5	Staphylococcus_phage	100.0	4.6e-24
WP_000362643.1|1600797_1601010_+	hypothetical protein	NA	D2JGJ1	Staphylococcus_phage	98.6	9.9e-33
WP_000771849.1|1601050_1601200_-	hypothetical protein	NA	D2JGJ0	Staphylococcus_phage	100.0	1.4e-20
WP_000435357.1|1601214_1601658_-	hypothetical protein	NA	A7TWF2	Staphylococcus_phage	100.0	8.9e-76
WP_000213811.1|1601705_1601918_-	helix-turn-helix transcriptional regulator	NA	A7TWF1	Staphylococcus_phage	100.0	1.6e-30
WP_000511090.1|1602069_1602801_+	helix-turn-helix transcriptional regulator	NA	S4SVC5	Staphylococcus_phage	99.2	1.3e-132
WP_000705240.1|1602871_1603054_+	hypothetical protein	NA	A0A2I6PDR4	Staphylococcus_phage	100.0	5.3e-27
WP_001794606.1|1603090_1603237_+	hypothetical protein	NA	A0A2I6PEK8	Staphylococcus_phage	97.9	2.6e-16
WP_000191459.1|1603233_1603848_-	hypothetical protein	NA	A7TW88	Staphylococcus_phage	100.0	7.9e-107
WP_000264751.1|1603973_1605179_+|integrase	site-specific integrase	integrase	A0A2I6PEN0	Staphylococcus_phage	100.0	7.7e-223
WP_001558502.1|1605221_1607249_-	hypothetical protein	NA	B5WZK7	Staphylococcus_phage	100.0	1.6e-116
1605263:1605291	attR	AAATAAACATATCATCATAATGTGATGGT	NA	NA	NA	NA
WP_001557355.1|1607241_1608168_-	DUF1672 domain-containing protein	NA	NA	NA	NA	NA
WP_000987774.1|1608411_1610163_-	two-component system sensor histidine kinase SrrB	NA	A0A1V0SGX0	Hokovirus	33.2	2.2e-21
WP_000064078.1|1610143_1610869_-	two-component system response regulator SrrA	NA	W8CYM9	Bacillus_phage	43.0	3.5e-45
>prophage 6
NZ_AP017320	Staphylococcus aureus strain MI	2860370	1745827	1754870	2860370	tRNA	uncultured_Mediterranean_phage(50.0%)	7	NA	NA
WP_000364542.1|1745827_1746346_-	adenine phosphoribosyltransferase	NA	A0A1V0SKE5	Klosneuvirus	46.5	5.6e-29
WP_060829107.1|1746367_1748641_-	single-stranded-DNA-specific exonuclease RecJ	NA	A7KV88	Bacillus_phage	29.3	1.4e-63
WP_000749795.1|1748843_1751123_-	protein translocase subunit SecDF	NA	A0A1B1IVP7	uncultured_Mediterranean_phage	35.8	1.8e-31
WP_001160682.1|1751397_1751658_-	preprotein translocase subunit YajC	NA	A0A1B1IVR5	uncultured_Mediterranean_phage	35.3	8.2e-05
WP_001112045.1|1751676_1752816_-|tRNA	tRNA guanosine(34) transglycosylase Tgt	tRNA	A0A1B1IVQ4	uncultured_Mediterranean_phage	44.7	5.4e-85
WP_001019178.1|1752838_1753864_-|tRNA	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	tRNA	NA	NA	NA	NA
WP_001005768.1|1753865_1754870_-	Holliday junction branch migration DNA helicase RuvB	NA	B3GAM6	uncultured_virus	29.1	1.7e-05
>prophage 7
NZ_AP017320	Staphylococcus aureus strain MI	2860370	1885013	1942702	2860370	protease,tRNA	Staphylococcus_phage(95.35%)	54	NA	NA
WP_001050568.1|1885013_1891574_-	LPXTG-anchored repetitive surface protein SasC	NA	A0A2H4PQU6	Staphylococcus_phage	98.3	6.1e-306
WP_000836461.1|1891899_1892211_-	rhodanese-like domain-containing protein	NA	A0A2H4PQR9	Staphylococcus_phage	99.0	4.8e-52
WP_001557386.1|1892232_1894650_-|tRNA	leucine--tRNA ligase	tRNA	A0A2H4PQS0	Staphylococcus_phage	99.5	0.0e+00
WP_001025067.1|1894937_1896119_-	MFS transporter	NA	A0A2H4PQR6	Staphylococcus_phage	99.7	7.3e-218
WP_000526539.1|1896228_1897182_+	TIGR01212 family radical SAM protein	NA	A0A2H4PQV5	Staphylococcus_phage	100.0	2.2e-79
WP_000764419.1|1897178_1897742_+	class I SAM-dependent methyltransferase	NA	A0A2H4PQV0	Staphylococcus_phage	99.5	8.3e-103
WP_000757543.1|1897864_1898266_-	MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_000266096.1|1898837_1899665_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_001790712.1|1899667_1899787_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001196362.1|1899897_1900899_+	proline dehydrogenase	NA	A0A2H4PQT6	Staphylococcus_phage	99.4	2.6e-184
WP_060829109.1|1901020_1901485_-	6,7-dimethyl-8-ribityllumazine synthase	NA	A0A2H4PQS3	Staphylococcus_phage	98.1	2.9e-69
WP_001159037.1|1901497_1902679_-	3,4-dihydroxy-2-butanone-4-phosphate synthase	NA	A0A2H4PQS2	Staphylococcus_phage	99.5	5.6e-226
WP_000493887.1|1902689_1903322_-	riboflavin synthase	NA	A0A2H4PQS5	Staphylococcus_phage	98.6	5.5e-111
WP_000077358.1|1903328_1904372_-	bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD	NA	A0A2H4PQS8	Staphylococcus_phage	98.8	5.3e-196
WP_001261668.1|1904852_1906355_-	FAD/NAD(P)-binding protein	NA	A0A2H4PQX2	Staphylococcus_phage	98.6	1.9e-29
WP_000221177.1|1906877_1907192_+	winged helix-turn-helix transcriptional regulator	NA	A0A2H4PQT4	Staphylococcus_phage	98.1	9.8e-53
WP_000989121.1|1907191_1908484_+	arsenite efflux transporter membrane subunit ArsB	NA	A0A2H4PQU3	Staphylococcus_phage	99.5	5.0e-228
WP_001032833.1|1908570_1909425_-	glucosaminidase domain-containing protein	NA	Q4ZCC7	Staphylococcus_virus	38.6	9.8e-39
WP_000384171.1|1909700_1909925_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000671057.1|1910123_1910594_+	RNA polymerase sigma factor	NA	A0A2H4PQT5	Staphylococcus_phage	98.1	8.8e-82
WP_001153742.1|1910706_1911150_+	competence protein ComK	NA	NA	NA	NA	NA
WP_001030469.1|1911136_1911580_-	hypothetical protein	NA	A0A2H4PQT8	Staphylococcus_phage	98.6	2.4e-57
WP_001168903.1|1911875_1912511_+|protease	CPBP family intramembrane metalloprotease SdpA	protease	NA	NA	NA	NA
WP_001096494.1|1912950_1913664_-	transaldolase	NA	M1PR54	Cyanophage	35.3	5.5e-19
WP_000091442.1|1913923_1914226_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001200542.1|1914481_1914847_+	fluoride efflux transporter CrcB	NA	A0A2H4PQR0	Staphylococcus_phage	100.0	3.6e-59
WP_000623470.1|1914843_1915197_+	CrcB family protein	NA	A0A2H4PQQ7	Staphylococcus_phage	94.0	3.8e-21
WP_000453306.1|1917193_1918027_-	aldo/keto reductase	NA	A0A2H4PQR8	Staphylococcus_phage	99.3	7.8e-158
WP_000366163.1|1918238_1919147_-	NERD domain-containing protein	NA	A0A2H4PQQ8	Staphylococcus_phage	100.0	3.4e-138
WP_000933820.1|1919268_1920465_-	methionine adenosyltransferase	NA	A0A2H4PQS6	Staphylococcus_phage	99.5	4.3e-218
WP_000109906.1|1920836_1922429_+	phosphoenolpyruvate carboxykinase (ATP)	NA	A0A2H4PQN1	Staphylococcus_phage	100.0	0.0e+00
WP_001822900.1|1922806_1923553_-	S9 family peptidase	NA	A0A2H4PQM6	Staphylococcus_phage	98.8	1.4e-142
WP_000672013.1|1923557_1924031_-	nucleoside triphosphatase YtkD	NA	A0A2H4PQM4	Staphylococcus_phage	98.7	7.2e-84
WP_000718107.1|1924096_1924354_+	membrane protein insertion efficiency factor YidD	NA	A0A2H4PQM5	Staphylococcus_phage	100.0	7.2e-46
WP_000778528.1|1924350_1925352_-	o-succinylbenzoate synthase	NA	A0A2H4PQM0	Staphylococcus_phage	97.3	5.3e-185
WP_000348364.1|1925356_1926835_-	o-succinylbenzoate--CoA ligase	NA	A0A2H4PQM9	Staphylococcus_phage	97.6	2.8e-283
WP_012840523.1|1926993_1927449_-	DUF4909 domain-containing protein	NA	A0A2H4PQN7	Staphylococcus_phage	99.3	3.6e-80
WP_001795210.1|1927751_1928402_+	excalibur calcium-binding domain-containing protein	NA	A0A2H4PQM8	Staphylococcus_phage	94.0	2.9e-51
WP_000070642.1|1928482_1929478_+	DUF4352 domain-containing protein	NA	A0A2H4PQN2	Staphylococcus_phage	97.9	2.6e-67
WP_000669024.1|1929552_1930179_+	hypothetical protein	NA	A0A2H4PQM7	Staphylococcus_phage	79.8	3.1e-74
WP_000627540.1|1930219_1930561_+	DUF3969 family protein	NA	A0A2H4PQN6	Staphylococcus_phage	94.7	1.1e-54
WP_000414216.1|1930661_1931234_+	hypothetical protein	NA	A0A2H4PQN4	Staphylococcus_phage	93.1	2.3e-23
WP_001801861.1|1932588_1932684_+	type I toxin-antitoxin system Fst family toxin PepA1	NA	NA	NA	NA	NA
WP_001792025.1|1932806_1932908_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000072627.1|1933983_1935213_-	restriction endonuclease subunit S	NA	A0A2H4PQP5	Staphylococcus_phage	64.7	4.0e-134
WP_000028669.1|1935205_1936762_-	type I restriction-modification system subunit M	NA	A0A2H4PQP4	Staphylococcus_phage	100.0	1.6e-289
WP_001791797.1|1936911_1937046_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001038752.1|1937108_1937828_-|protease	serine protease SplF	protease	A0A2H4PQP1	Staphylococcus_phage	99.6	1.9e-131
WP_011447030.1|1937929_1938037_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001038704.1|1937985_1938705_-|protease	serine protease SplD	protease	A0A2H4PQP9	Staphylococcus_phage	99.6	4.6e-130
WP_001038872.1|1938825_1939545_-|protease	serine protease SplC	protease	A0A2H4PQP7	Staphylococcus_phage	98.7	1.3e-129
WP_001039454.1|1939602_1940325_-|protease	serine protease SplB	protease	A0A2H4PQN0	Staphylococcus_phage	98.3	3.5e-130
WP_001039427.1|1940449_1941157_-|protease	serine protease SplA	protease	A0A2H4PQN3	Staphylococcus_phage	97.0	7.9e-127
WP_001092780.1|1942120_1942702_+	DUF4888 domain-containing protein	NA	A0A2H4PQH6	Staphylococcus_phage	64.8	9.6e-54
>prophage 8
NZ_AP017320	Staphylococcus aureus strain MI	2860370	2040955	2134680	2860370	protease,tRNA,capsid,portal,holin,integrase,head,terminase,tail	Staphylococcus_phage(88.46%)	113	2037392:2037416	2136966:2136990
2037392:2037416	attL	ACCCCAACTTGCATTGTCTGTAGAA	NA	NA	NA	NA
WP_000170162.1|2040955_2041258_-|tRNA	Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatC	tRNA	NA	NA	NA	NA
WP_000957020.1|2041624_2043163_+	sodium/proline symporter PutP	NA	NA	NA	NA	NA
WP_000831700.1|2043251_2044451_-	CamS family sex pheromone protein	NA	NA	NA	NA	NA
WP_000774556.1|2044463_2046467_-	NAD-dependent DNA ligase LigA	NA	A0A0K2QQN8	Ralstonia_phage	36.2	1.2e-114
WP_000992924.1|2046470_2048663_-	DNA helicase PcrA	NA	A7KV33	Bacillus_phage	42.2	1.0e-135
WP_000272056.1|2048659_2049352_-	heptaprenylglyceryl phosphate synthase	NA	NA	NA	NA	NA
WP_001165363.1|2049523_2049826_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000572878.1|2049934_2051230_-	adenylosuccinate lyase	NA	A0A1B3B081	Gordonia_phage	32.9	1.6e-16
WP_000827746.1|2052089_2053256_+|protease	cysteine protease staphopain A	protease	NA	NA	NA	NA
WP_000434933.1|2053286_2053613_+	staphostatin A	NA	NA	NA	NA	NA
WP_000669862.1|2053904_2054078_-	NETI motif-containing protein	NA	NA	NA	NA	NA
WP_000011542.1|2054058_2054661_-	DUF2179 domain-containing protein	NA	NA	NA	NA	NA
WP_000040866.1|2054931_2055753_-	ammonia-dependent NAD(+) synthetase	NA	G3MA24	Bacillus_virus	52.7	2.3e-69
WP_000284436.1|2055745_2057215_-	nicotinate phosphoribosyltransferase	NA	G3MA18	Bacillus_virus	45.1	5.9e-108
WP_000897635.1|2057398_2058475_+	nitric oxide synthase oxygenase	NA	NA	NA	NA	NA
WP_001177828.1|2058494_2059289_+	prephenate dehydratase	NA	NA	NA	NA	NA
WP_001802312.1|2059360_2059468_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000323161.1|2059478_2061041_-	SLC13 family permease	NA	NA	NA	NA	NA
WP_000275727.1|2061245_2062343_-	pectate lyase	NA	U5PWM6	Bacillus_phage	34.6	3.3e-47
WP_000149686.1|2062711_2063272_+	cysteine hydrolase	NA	G3MA16	Bacillus_virus	41.2	2.0e-32
WP_001140871.1|2063324_2064254_+	manganese-dependent inorganic pyrophosphatase	NA	NA	NA	NA	NA
WP_001792184.1|2064446_2064620_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001021211.1|2064671_2066051_+	aldehyde dehydrogenase	NA	NA	NA	NA	NA
WP_000181315.1|2066170_2067199_-	lactonase family protein	NA	NA	NA	NA	NA
WP_000205106.1|2067468_2067870_+	YolD-like family protein	NA	U3PG23	Staphylococcus_phage	42.9	6.0e-23
WP_000267034.1|2068442_2068616_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001188043.1|2069066_2070107_+	linear amide C-N hydrolase	NA	NA	NA	NA	NA
WP_000713072.1|2070163_2071006_-	DUF4097 family beta strand repeat protein	NA	NA	NA	NA	NA
WP_001033971.1|2071002_2071560_-	DUF1700 domain-containing protein	NA	NA	NA	NA	NA
WP_000966288.1|2071619_2072144_-	membrane protein	NA	NA	NA	NA	NA
WP_000182842.1|2072264_2072828_+	thioredoxin family protein	NA	NA	NA	NA	NA
WP_001221651.1|2072893_2073634_-	phenol-soluble modulin export ABC transporter permease subunit PmtD	NA	NA	NA	NA	NA
WP_000763043.1|2073633_2074506_-	phenol-soluble modulin export ABC transporter ATP-binding protein PmtC	NA	A0A2H4PQG7	Staphylococcus_phage	36.0	1.0e-27
WP_000645727.1|2074502_2075183_-	phenol-soluble modulin export ABC transporter permease subunit PmtB	NA	NA	NA	NA	NA
WP_000991306.1|2075183_2076080_-	phenol-soluble modulin export ABC transporter ATP-binding protein PmtA	NA	A0A2H4PQG7	Staphylococcus_phage	30.2	5.0e-17
WP_000691584.1|2076076_2076457_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_000681968.1|2076714_2076891_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000990056.1|2077133_2077232_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001068542.1|2077431_2078718_+	aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme	NA	NA	NA	NA	NA
WP_000671712.1|2078996_2079287_-	MAP domain-containing protein	NA	NA	NA	NA	NA
WP_001810293.1|2079301_2080732_-	MAP domain-containing protein	NA	NA	NA	NA	NA
WP_000669789.1|2081689_2081869_+	hypothetical protein	NA	A0A1W6JQ29	Staphylococcus_phage	100.0	2.2e-25
WP_001791826.1|2082179_2082440_+	hypothetical protein	NA	M9NS66	Staphylococcus_phage	100.0	2.3e-23
WP_000702263.1|2082492_2082843_-	complement inhibitor SCIN-A	NA	A0A1P8L6B0	Staphylococcus_phage	100.0	7.5e-54
WP_000727649.1|2083526_2083976_+	chemotaxis-inhibiting protein CHIPS	NA	A0A1P8L6A8	Staphylococcus_phage	100.0	1.1e-78
WP_000919350.1|2085055_2085547_-	staphylokinase	NA	A0A1X9H028	Staphylococcus_phage	100.0	9.5e-87
WP_000861038.1|2085737_2086493_-	CHAP domain-containing protein	NA	D2JLG5	Staphylococcus_phage	100.0	3.4e-152
WP_000611512.1|2086504_2086759_-|holin	phage holin	holin	D2JLG4	Staphylococcus_phage	100.0	4.1e-41
WP_001791821.1|2086810_2086918_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011447039.1|2086970_2087147_-|holin	putative holin-like toxin	holin	D2JLG3	Staphylococcus_phage	98.3	2.2e-22
WP_000539688.1|2087296_2087593_-	DUF2951 domain-containing protein	NA	D2JLG2	Staphylococcus_phage	100.0	2.9e-46
WP_001040254.1|2087650_2087938_-	hypothetical protein	NA	D2JLG1	Staphylococcus_phage	98.9	4.9e-43
WP_001153681.1|2087984_2088137_-	hypothetical protein	NA	D2JLG0	Staphylococcus_phage	100.0	5.2e-20
WP_000582180.1|2088126_2091912_-	hypothetical protein	NA	D2JLF9	Staphylococcus_phage	99.6	0.0e+00
WP_000567410.1|2091927_2093412_-|tail	phage tail family protein	tail	A0A2I6PDJ0	Staphylococcus_phage	99.2	1.9e-295
WP_060829111.1|2093408_2097938_-|tail	phage tail tape measure protein	tail	A0A1X9H084	Staphylococcus_phage	99.2	0.0e+00
WP_001549167.1|2097994_2098132_-	hypothetical protein	NA	A0A2I6PDX7	Staphylococcus_phage	100.0	3.4e-18
WP_001096355.1|2098182_2098533_-	hypothetical protein	NA	G4KNQ8	Staphylococcus_phage	100.0	7.8e-59
WP_072050172.1|2098582_2098807_-	Ig-like domain-containing protein	NA	A0A075LYE8	Staphylococcus_phage	98.6	8.8e-32
WP_000268741.1|2098848_2099493_-|tail	phage tail protein	tail	W5R9H4	Staphylococcus_phage	100.0	6.5e-120
WP_000565498.1|2099493_2099901_-	hypothetical protein	NA	G4KNQ6	Staphylococcus_phage	100.0	7.1e-72
WP_000114341.1|2099897_2100302_-	HK97 gp10 family phage protein	NA	A0A1W6JPJ1	Staphylococcus_phage	100.0	2.5e-69
WP_000755150.1|2100298_2100661_-|head,tail	head-tail adaptor protein	head,tail	G4KNQ4	Staphylococcus_phage	100.0	4.4e-65
WP_000150937.1|2100644_2100929_-|head,tail	phage head-tail adapter protein	head,tail	A0A2I6PDJ5	Staphylococcus_phage	98.9	4.0e-45
WP_000238240.1|2100918_2101203_-	hypothetical protein	NA	A0A1W6JPL8	Staphylococcus_phage	100.0	2.3e-45
WP_000154569.1|2101222_2102368_-|capsid	phage major capsid protein	capsid	A0A1W6JPL4	Staphylococcus_phage	99.7	7.3e-215
WP_000861912.1|2102390_2103128_-|protease	Clp protease ClpP	protease	A0A1W6JPK0	Staphylococcus_phage	99.2	5.2e-129
WP_000025266.1|2103111_2104299_-|portal	phage portal protein	portal	A0A2I6PDI1	Staphylococcus_phage	99.7	3.0e-219
WP_000625096.1|2104314_2105976_-|terminase	terminase large subunit	terminase	A0A075M4D3	Staphylococcus_phage	100.0	0.0e+00
WP_000402904.1|2105972_2106317_-	hypothetical protein	NA	G4KNP9	Staphylococcus_phage	100.0	9.4e-57
WP_000988332.1|2106447_2106747_-	HNH endonuclease	NA	A0A2I6PDH9	Staphylococcus_phage	100.0	3.5e-52
WP_000590122.1|2106978_2107395_-	hypothetical protein	NA	G4KNP7	Staphylococcus_phage	100.0	1.3e-76
WP_001622114.1|2107422_2107623_-	DUF1514 family protein	NA	A0A2I6PDV9	Staphylococcus_phage	98.5	4.0e-28
WP_000595265.1|2107622_2107772_-	transcriptional activator RinB	NA	A0A1W6JPZ2	Staphylococcus_phage	100.0	4.8e-18
WP_000592207.1|2107768_2108155_-	hypothetical protein	NA	W5R986	Staphylococcus_phage	100.0	3.0e-64
WP_000195803.1|2108151_2108358_-	DUF1381 domain-containing protein	NA	A0A0H3U2R7	Staphylococcus_phage	100.0	1.3e-29
WP_001282074.1|2108354_2108600_-	hypothetical protein	NA	A0A2I6PDW7	Staphylococcus_phage	100.0	5.0e-36
WP_000714403.1|2109165_2109336_-	hypothetical protein	NA	A0A0H3U4U6	Staphylococcus_phage	100.0	8.2e-22
WP_001065097.1|2109322_2109577_-	DUF1024 family protein	NA	A0A0H3U469	Staphylococcus_phage	100.0	5.0e-39
WP_000178985.1|2109591_2109840_-	hypothetical protein	NA	A0A0K1LL46	Staphylococcus_phage	95.1	2.8e-39
WP_000111491.1|2109836_2110094_-	DUF3310 domain-containing protein	NA	A0A1X9H067	Staphylococcus_phage	98.8	6.3e-42
WP_000101279.1|2110093_2110465_-	hypothetical protein	NA	A0A2I6PDG3	Staphylococcus_phage	91.1	1.4e-50
WP_000401960.1|2110477_2110882_-	RusA family crossover junction endodeoxyribonuclease	NA	A0EWX6	Staphylococcus_phage	100.0	1.9e-72
WP_000338530.1|2110890_2111109_-	hypothetical protein	NA	A0A2I6PDG4	Staphylococcus_phage	100.0	1.0e-37
WP_000148321.1|2111115_2112009_-	DnaD domain-containing protein	NA	A0A2I6PDG7	Staphylococcus_phage	99.3	5.5e-141
WP_000610648.1|2112038_2112509_-	single-stranded DNA-binding protein	NA	A0EWX3	Staphylococcus_phage	98.7	1.3e-80
WP_073394849.1|2112509_2113127_-	MBL fold metallo-hydrolase	NA	A0A2I6PDI9	Staphylococcus_phage	100.0	9.1e-87
WP_000138475.1|2113207_2114128_-	recombinase RecT	NA	A0A2I6PDH5	Staphylococcus_phage	100.0	2.3e-166
WP_000700555.1|2114129_2116073_-	AAA family ATPase	NA	S4V9K6	Staphylococcus_phage	100.0	0.0e+00
WP_001205732.1|2116081_2116345_-	hypothetical protein	NA	A0A2I6PDG2	Staphylococcus_phage	100.0	7.7e-43
WP_000291510.1|2116353_2116614_-	DUF1108 family protein	NA	A0A1P8L6F5	Staphylococcus_phage	100.0	5.2e-44
WP_000165374.1|2116618_2116921_-	DUF2482 family protein	NA	W5RAK4	Staphylococcus_phage	95.0	2.2e-46
WP_000066021.1|2117013_2117175_-	DUF1270 family protein	NA	Q4ZBM9	Staphylococcus_phage	100.0	3.8e-21
WP_001120197.1|2117171_2117492_-	DUF771 domain-containing protein	NA	A0A2I6PDH6	Staphylococcus_phage	100.0	1.5e-56
WP_000762521.1|2117546_2117927_+	DUF2513 domain-containing protein	NA	Q9T1Z5	Staphylococcus_phage	100.0	1.2e-68
WP_001148862.1|2117913_2118111_-	hypothetical protein	NA	O80075	Staphylococcus_phage	87.7	3.5e-24
WP_001148342.1|2118126_2118882_-	phage antirepressor KilAC domain-containing protein	NA	A0A0H4J326	Staphylococcus_phage	99.6	7.4e-139
WP_000435341.1|2119500_2119761_-	transcriptional regulator	NA	A7TW91	Staphylococcus_phage	100.0	2.7e-40
WP_000639926.1|2119773_2120016_-	DUF739 family protein	NA	A0A075LZJ3	Staphylococcus_phage	100.0	2.8e-39
WP_001083975.1|2120179_2120896_+	helix-turn-helix domain-containing protein	NA	A0A1X9H038	Staphylococcus_phage	100.0	5.4e-131
WP_001557601.1|2120907_2121762_+	restriction endonuclease	NA	A0A1X9H037	Staphylococcus_phage	100.0	7.3e-151
WP_000345949.1|2121835_2121982_+	hypothetical protein	NA	A0A1X9H032	Staphylococcus_phage	100.0	3.3e-19
WP_000100503.1|2121978_2122164_+	hypothetical protein	NA	A0A1X9H0K5	Staphylococcus_phage	100.0	1.1e-24
WP_000705240.1|2122363_2122546_+	hypothetical protein	NA	A0A2I6PDR4	Staphylococcus_phage	100.0	5.3e-27
WP_001549185.1|2122623_2123337_+	type II toxin-antitoxin system PemK/MazF family toxin	NA	A0A1X9H026	Staphylococcus_phage	100.0	5.0e-129
WP_000857198.1|2123527_2124565_+|integrase	site-specific integrase	integrase	A0A1X9H022	Staphylococcus_phage	100.0	2.6e-179
WP_000595392.1|2125683_2126700_-	bi-component leukocidin LukGH subunit G	NA	A0A1X9IGW5	Staphylococcus_phage	30.2	6.7e-26
WP_000791411.1|2126721_2127777_-	bi-component leukocidin LukGH subunit H	NA	A0A1X9IGW5	Staphylococcus_phage	34.3	2.8e-35
WP_000206625.1|2128212_2129436_+	ArgE/DapE family deacylase	NA	NA	NA	NA	NA
WP_001045079.1|2129938_2131246_+	TrkH family potassium uptake protein	NA	NA	NA	NA	NA
WP_000240642.1|2131785_2133402_-	chaperonin GroEL	NA	A0A240F779	uncultured_virus	54.7	3.4e-157
WP_031771823.1|2133477_2133762_-	co-chaperone GroES	NA	A0A221S386	uncultured_virus	46.2	1.6e-14
WP_000197635.1|2133936_2134680_+|protease	CPBP family intramembrane metalloprotease	protease	NA	NA	NA	NA
2136966:2136990	attR	ACCCCAACTTGCATTGTCTGTAGAA	NA	NA	NA	NA
>prophage 1
NZ_AP017321	Staphylococcus aureus strain MI plasmid pMI, complete sequence	55980	6	7370	55980	transposase	Staphylococcus_phage(50.0%)	6	NA	NA
WP_001105984.1|6_681_+|transposase	IS6-like element IS257 family transposase	transposase	A0A0N9RU54	Staphylococcus_phage	98.2	3.8e-126
WP_000393259.1|1172_1565_+	GNAT family N-acetyltransferase	NA	A0A0N7GFH7	Staphylococcus_phage	100.0	6.9e-72
WP_001028144.1|1565_3005_+	aminoglycoside O-phosphotransferase APH(2'')-Ia	NA	A0A1X9I6C2	Streptococcus_phage	100.0	3.8e-285
WP_001105984.1|3655_4330_+|transposase	IS6-like element IS257 family transposase	transposase	A0A0N9RU54	Staphylococcus_phage	98.2	3.8e-126
WP_000360133.1|4439_5900_-	glucose-6-phosphate dehydrogenase	NA	M4SIY3	Cyanophage	36.1	1.4e-72
WP_000097595.1|5963_7370_-	NADP-dependent phosphogluconate dehydrogenase	NA	A0A0P0C6S9	Ostreococcus_lucimarinus_virus	29.0	2.0e-41
