assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_001548315.1_ASM154831v1	NZ_AP014950	Klebsiella pneumoniae strain YH43	1	88900-89114	1	CRISPRCasFinder	no	cas3	cas3,csa3,DEDDh,DinG,cas3HD,WYL	Unclear	ACCCGGGGATCCCTGCTTGCGCTACGCTTAGCAGGGCTACAGTTCTGCGCCGT	53	0	0	NA	NA	NA	1	1	Unclear	cas3,csa3,DEDDh,DinG,cas3HD,WYL	NA,NA	NA|773aa|up_9|NZ_AP014950.1_73116_75435_+	PRK10658, PRK10658, putative alpha-glucosidase; Provisional	NA|241aa|up_8|NZ_AP014950.1_75594_76317_+	COG1737, RpiR, Transcriptional regulators [Transcription]	NA|460aa|up_7|NZ_AP014950.1_76653_78033_-	cd05296, GH4_P_beta_glucosidase, Glycoside Hydrolases Family 4; Phospho-beta-glucosidase	NA|520aa|up_6|NZ_AP014950.1_78045_79605_-	TIGR02005, PTS-IIBC-alpha, PTS system, alpha-glucoside-specific IIBC component	NA|566aa|up_5|NZ_AP014950.1_79859_81557_-	pfam05170, AsmA, AsmA family	NA|464aa|up_4|NZ_AP014950.1_81697_83089_-	COG2233, UraA, Xanthine/uracil permeases [Nucleotide transport and metabolism]	NA|401aa|up_3|NZ_AP014950.1_83373_84576_+	TIGR00210, Sodium/glutamate_symport_carrier_protein, sodium--glutamate symport carrier (gltS)	NA|504aa|up_2|NZ_AP014950.1_84686_86198_-	PRK00047, glpK, glycerol kinase GlpK	NA|284aa|up_1|NZ_AP014950.1_86219_87071_-	cd00333, MIP, Major intrinsic protein (MIP) superfamily	NA|82aa|up_0|NZ_AP014950.1_87513_87759_+	PRK15422, PRK15422, septal ring assembly protein ZapB; Provisional	NA|255aa|down_0|NZ_AP014950.1_89230_89995_+	PRK05471, PRK05471, CDP-diacylglycerol pyrophosphatase; Provisional	NA|435aa|down_1|NZ_AP014950.1_90059_91364_+	TIGR00785, Uncharacterized_transporter_HI_0020, anion transporter	NA|256aa|down_2|NZ_AP014950.1_91456_92224_-	PRK00042, tpiA, triosephosphate isomerase; Provisional	NA|200aa|down_3|NZ_AP014950.1_92333_92933_-	pfam07305, DUF1454, Protein of unknown function (DUF1454)	NA|143aa|down_4|NZ_AP014950.1_93045_93474_+	COG3152, COG3152, Predicted membrane protein [Function unknown]	NA|249aa|down_5|NZ_AP014950.1_93474_94221_-	PRK10926, PRK10926, ferredoxin-NADP reductase; Provisional	NA|337aa|down_6|NZ_AP014950.1_94371_95382_-	COG1494, GlpX, Fructose-1,6-bisphosphatase/sedoheptulose 1,7-bisphosphatase and related proteins [Carbohydrate transport and metabolism]	cas3|694aa|down_7|NZ_AP014950.1_95432_97514_-	PRK10917, PRK10917, ATP-dependent DNA helicase RecG; Provisional	NA|230aa|down_8|NZ_AP014950.1_97519_98209_-	PRK11081, PRK11081, tRNA guanosine-2'-O-methyltransferase; Provisional	NA|707aa|down_9|NZ_AP014950.1_98213_100334_-	PRK11092, PRK11092, bifunctional GTP diphosphokinase/guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase
GCF_001548315.1_ASM154831v1	NZ_AP014950	Klebsiella pneumoniae strain YH43	2	298591-298723	2	CRISPRCasFinder	no		cas3,csa3,DEDDh,DinG,cas3HD,WYL	Orphan	CTTATCCGGGCTACCCGACGGTCCGGAACCGTAGCCCTGCTAAGCG	46	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,DEDDh,DinG,cas3HD,WYL	NA,NA	NA|662aa|up_9|NZ_AP014950.1_289158_291144_+	PRK08125, PRK08125, bifunctional UDP-4-amino-4-deoxy-L-arabinose formyltransferase/UDP-glucuronic acid oxidase ArnA	NA|301aa|up_8|NZ_AP014950.1_291140_292043_+	PRK15394, PRK15394, 4-deoxy-4-formamido-L-arabinose-phosphoundecaprenol deformylase ArnD; Provisional	NA|552aa|up_7|NZ_AP014950.1_292042_293698_+	PRK13279, arnT, lipid IV(A) 4-amino-4-deoxy-L-arabinosyltransferase	NA|113aa|up_6|NZ_AP014950.1_293694_294033_+	PRK15051, PRK15051, 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE; Provisional	NA|127aa|up_5|NZ_AP014950.1_294032_294413_+	PRK02971, PRK02971, 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnF; Provisional	NA|350aa|up_4|NZ_AP014950.1_294409_295459_-	PRK12287, tqsA, pheromone autoinducer 2 transporter; Reviewed	NA|407aa|up_3|NZ_AP014950.1_295592_296813_+	PRK05122, PRK05122, major facilitator superfamily transporter; Provisional	NA|186aa|up_2|NZ_AP014950.1_296813_297371_-	PRK11615, PRK11615, hypothetical protein; Provisional	NA|222aa|up_1|NZ_AP014950.1_297444_298110_-	PRK11212, PRK11212, 7-cyano-7-deazaguanine/7-aminomethyl-7-deazaguanine transporter	NA|82aa|up_0|NZ_AP014950.1_298316_298562_+	PRK00299, PRK00299, sulfurtransferase TusA	NA|737aa|down_0|NZ_AP014950.1_298752_300963_-	PRK11033, zntA, zinc/cadmium/mercury/lead-transporting ATPase; Provisional	NA|209aa|down_1|NZ_AP014950.1_301041_301668_-	COG3714, COG3714, Predicted membrane protein [Function unknown]	NA|117aa|down_2|NZ_AP014950.1_301818_302169_+	pfam10694, DUF2500, Protein of unknown function (DUF2500)	NA|92aa|down_3|NZ_AP014950.1_302182_302458_-	PRK10910, PRK10910, DUF1145 family protein	NA|199aa|down_4|NZ_AP014950.1_302447_303044_-	PRK10909, rsmD, 16S rRNA m(2)G966-methyltransferase; Provisional	NA|508aa|down_5|NZ_AP014950.1_303227_304751_+	PRK10416, PRK10416, signal recognition particle-docking protein FtsY; Provisional	NA|223aa|down_6|NZ_AP014950.1_304753_305422_+	PRK10908, PRK10908, cell division ATP-binding protein FtsE	NA|352aa|down_7|NZ_AP014950.1_305414_306470_+	PRK11026, ftsX, cell division ABC transporter subunit FtsX; Provisional	NA|285aa|down_8|NZ_AP014950.1_306739_307594_+	PRK06596, PRK06596, RNA polymerase factor sigma-32; Reviewed	NA|508aa|down_9|NZ_AP014950.1_307646_309170_-	COG1167, ARO8, Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs [Transcription / Amino acid transport and metabolism]
GCF_001548315.1_ASM154831v1	NZ_AP014950	Klebsiella pneumoniae strain YH43	3	1032023-1032722	3,1	CRISPRCasFinder,CRT	no		cas3,csa3,DEDDh,DinG,cas3HD,WYL	Orphan	GTGTTCCCCGCGCCAGCGGGGATAAACCG,GTGTTCCCCGCGCCAGCGGGGATAAACCG	29,29	0	0	NA	NA	I-E:I-E	11,11	11	Orphan	cas3,csa3,DEDDh,DinG,cas3HD,WYL	NA,NA|674aa|down_0|NZ_AP014950.1_1032824_1034846_-	NA|450aa|up_9|NZ_AP014950.1_1020065_1021415_+	cd17371, MFS_MucK, Cis,cis-muconate transport protein and similar proteins of the Major Facilitator Superfamily	NA|261aa|up_8|NZ_AP014950.1_1021392_1022175_+	COG2086, FixA, Electron transfer flavoprotein, beta subunit [Energy production and conversion]	NA|285aa|up_7|NZ_AP014950.1_1022171_1023026_+	COG2025, FixB, Electron transfer flavoprotein, alpha subunit [Energy production and conversion]	NA|192aa|up_6|NZ_AP014950.1_1023111_1023687_-	COG1954, GlpP, Glycerol-3-phosphate responsive antiterminator (mRNA-binding) [Transcription]	NA|87aa|up_5|NZ_AP014950.1_1023708_1023969_-	COG2440, FixX, Ferredoxin-like protein [Energy production and conversion]	NA|424aa|up_4|NZ_AP014950.1_1023959_1025231_-	PRK10015, PRK10015, oxidoreductase; Provisional	NA|122aa|up_3|NZ_AP014950.1_1025311_1025677_-	cd00470, PTPS, 6-pyruvoyl tetrahydropterin synthase (PTPS)	NA|600aa|up_2|NZ_AP014950.1_1025993_1027793_+	PRK10953, cysJ, NADPH-dependent assimilatory sulfite reductase flavoprotein subunit	NA|571aa|up_1|NZ_AP014950.1_1027792_1029505_+	PRK13504, PRK13504, NADPH-dependent assimilatory sulfite reductase hemoprotein subunit	NA|245aa|up_0|NZ_AP014950.1_1029602_1030337_+	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase	NA|674aa|down_0|NZ_AP014950.1_1032824_1034846_-	NA	NA|396aa|down_1|NZ_AP014950.1_1034832_1036020_-	pfam11340, DUF3142, Protein of unknown function (DUF3142)	NA|352aa|down_2|NZ_AP014950.1_1036055_1037111_-	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional	NA|469aa|down_3|NZ_AP014950.1_1037357_1038764_+	PRK10637, cysG, siroheme synthase CysG	NA|303aa|down_4|NZ_AP014950.1_1038773_1039682_+	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD	NA|476aa|down_5|NZ_AP014950.1_1039691_1041119_+	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional	NA|202aa|down_6|NZ_AP014950.1_1041118_1041724_+	PRK03846, PRK03846, adenylylsulfate kinase; Provisional	NA|109aa|down_7|NZ_AP014950.1_1041774_1042101_+	pfam12084, DUF3561, Protein of unknown function (DUF3561)	NA|106aa|down_8|NZ_AP014950.1_1042241_1042559_+	PRK00888, ftsB, cell division protein FtsB; Reviewed	NA|237aa|down_9|NZ_AP014950.1_1042578_1043289_+	PRK00155, ispD, D-ribitol-5-phosphate cytidylyltransferase
GCF_001548315.1_ASM154831v1	NZ_AP014950	Klebsiella pneumoniae strain YH43	4	4058755-4058897	4	CRISPRCasFinder	no		cas3,csa3,DEDDh,DinG,cas3HD,WYL	Orphan	CCCTCACCCTAACCCTCTCCCACAGGGAGAGGGGACCGCCCGGCAG	46	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,DEDDh,DinG,cas3HD,WYL	NA,NA	NA|445aa|up_9|NZ_AP014950.1_4046536_4047871_-	COG1167, ARO8, Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs [Transcription / Amino acid transport and metabolism]	NA|303aa|up_8|NZ_AP014950.1_4047994_4048903_+	COG0697, RhaT, Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]	NA|423aa|up_7|NZ_AP014950.1_4049006_4050275_-	PRK12893, PRK12893, Zn-dependent hydrolase	NA|337aa|up_6|NZ_AP014950.1_4050372_4051383_-	COG0444, DppD, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]	NA|346aa|up_5|NZ_AP014950.1_4051372_4052410_-	COG4608, AppF, ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]	NA|298aa|up_4|NZ_AP014950.1_4052413_4053307_-	COG1173, DppC, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism]	NA|318aa|up_3|NZ_AP014950.1_4053309_4054263_-	COG0601, DppB, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism]	NA|556aa|up_2|NZ_AP014950.1_4054281_4055949_-	cd08495, PBP2_NikA_DppA_OppA_like_8, The substrate-binding component of an uncharacterized ABC-type nickel/dipeptide/oligopeptide-like import system contains the type 2 periplasmic binding fold	NA|372aa|up_1|NZ_AP014950.1_4056274_4057390_+	PRK13516, PRK13516, gamma-glutamyl:cysteine ligase; Provisional	NA|240aa|up_0|NZ_AP014950.1_4057437_4058157_+	COG3698, COG3698, Predicted periplasmic protein [Function unknown]	NA|1031aa|down_0|NZ_AP014950.1_4058914_4062007_-	COG0841, AcrB, Cation/multidrug efflux pump [Defense mechanisms]	NA|360aa|down_1|NZ_AP014950.1_4062020_4063100_-	TIGR01730, COG0845:_Membrane-fusion_protein, RND family efflux transporter, MFP subunit	NA|908aa|down_2|NZ_AP014950.1_4063153_4065877_-	cd02080, P-type_ATPase_cation, P-type cation-transporting ATPase similar to Exiguobacterium aurantiacum Mna, an Na(+)-ATPase, and Synechocystis sp	NA|83aa|down_3|NZ_AP014950.1_4066378_4066627_+	pfam06643, DUF1158, Protein of unknown function (DUF1158)	NA|114aa|down_4|NZ_AP014950.1_4066643_4066985_-	PRK10219, PRK10219, superoxide response transcriptional regulator SoxS	NA|372aa|down_5|NZ_AP014950.1_4067015_4068131_-	cd16283, RomA-like_MBL-fold, Enterobacter cloacae RomA and related proteins; MBL-fold metallo hydrolase domain	NA|195aa|down_6|NZ_AP014950.1_4068310_4068895_+	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|123aa|down_7|NZ_AP014950.1_4068891_4069260_+	PRK10250, PRK10250, MmcQ/YjbR family DNA-binding protein	NA|218aa|down_8|NZ_AP014950.1_4069379_4070033_+	PRK11053, PRK11053, oxygen-insensitive NAD(P)H nitroreductase	NA|96aa|down_9|NZ_AP014950.1_4070473_4070761_-	smart00530, HTH_XRE, Helix-turn-helix XRE-family like proteins
GCF_001548315.1_ASM154831v1	NZ_AP014950	Klebsiella pneumoniae strain YH43	5	4512700-4512830	5	CRISPRCasFinder	no		cas3,csa3,DEDDh,DinG,cas3HD,WYL	Orphan	TTTCCCGGATGCGGCGCATTGCGCCTTATCCGGGCTACCAAATC	44	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,DEDDh,DinG,cas3HD,WYL	NA,NA|46aa|down_8|NZ_AP014950.1_4526907_4527045_+	NA|129aa|up_9|NZ_AP014950.1_4502131_4502518_+	PRK13677, PRK13677, DUF3461 family protein	NA|386aa|up_8|NZ_AP014950.1_4502635_4503793_-	PRK11477, PRK11477, CdaR family transcriptional regulator	NA|478aa|up_7|NZ_AP014950.1_4503961_4505395_-	PRK10942, PRK10942, serine endoprotease DegP	NA|505aa|up_6|NZ_AP014950.1_4505529_4507044_-	PRK04926, dgt, deoxyguanosinetriphosphate triphosphohydrolase; Provisional	NA|233aa|up_5|NZ_AP014950.1_4507127_4507826_+	PRK05584, PRK05584, 5'-methylthioadenosine/adenosylhomocysteine nucleosidase	NA|267aa|up_4|NZ_AP014950.1_4507818_4508619_+	PRK03379, PRK03379, vitamin B12-transporter protein BtuF; Provisional	NA|208aa|up_3|NZ_AP014950.1_4508655_4509279_+	PRK10578, PRK10578, hypothetical protein; Provisional	NA|115aa|up_2|NZ_AP014950.1_4509364_4509709_-	PRK13623, PRK13623, iron-sulfur cluster insertion protein ErpA; Provisional	NA|473aa|up_1|NZ_AP014950.1_4509790_4511209_-	PRK05277, PRK05277, H(+)/Cl(-) exchange transporter ClcA	NA|427aa|up_0|NZ_AP014950.1_4511389_4512670_+	PRK00062, PRK00062, glutamate-1-semialdehyde 2,1-aminomutase	NA|661aa|down_0|NZ_AP014950.1_4512893_4514876_-	PRK10577, PRK10577, Fe(3+)-hydroxamate ABC transporter permease FhuB	NA|297aa|down_1|NZ_AP014950.1_4514872_4515763_-	PRK10576, PRK10576, Fe(3+)-hydroxamate ABC transporter substrate-binding protein FhuD	NA|266aa|down_2|NZ_AP014950.1_4515762_4516560_-	PRK10575, PRK10575, Fe3+-hydroxamate ABC transporter ATP-binding protein FhuC	NA|736aa|down_3|NZ_AP014950.1_4516605_4518813_-	PRK10044, PRK10044, ferrichrome outer membrane transporter; Provisional	NA|851aa|down_4|NZ_AP014950.1_4519047_4521600_-	PRK09506, mrcB, bifunctional glycosyl transferase/transpeptidase; Reviewed	NA|125aa|down_5|NZ_AP014950.1_4522187_4522562_+	TIGR01004, Pullulanase_secretion_protein_PulS, lipoprotein, PulS/OutS family	NA|186aa|down_6|NZ_AP014950.1_4522601_4523159_-	pfam16537, T2SSB, Type II secretion system protein B	NA|1103aa|down_7|NZ_AP014950.1_4523414_4526723_-	TIGR02103, pullulanase-like_protein_starch, alpha-1,6-glucosidases, pullulanase-type	NA|46aa|down_8|NZ_AP014950.1_4526907_4527045_+	NA	NA|281aa|down_9|NZ_AP014950.1_4527029_4527872_+	TIGR01713, Type_II_secretion_system_protein_C, type II secretion system protein C
